>input_sequence_78962
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--------------------------ATGGCGGCGAGCAAGGGCGCGAGGAAGAGCCTGGTGTCGAGGACCCTGGAGCGG
TGCCGATCCGGGCTGGCCAGCGGTGGCCGGTCGTCGGCGGCGGTGGCGCCCGGGTGCTTCTCGGTGTACGTTGGGCCGGA
GCGGGAGCGGTTCGTGGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGCCGCCTCCTCGACGACGCAGAGCAGGAGT
ACGGCTACGCGGCGCAGGGGCCGCTCGCGCTGCCCTGCTCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGACCAC
GACGTCCAGGACGACGACGATGGCGAGGCCGCCGTGGCCCCGTCGACGCCCATATGCGGCCTGCAGCGCGCCGGCAGCGG
GAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCTTCCTTCTTCTTCTCGCAGA
CGGCGGCTGGCGGTAGGAGGTGA---------------------------------------------------------
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>chr3B_1_TraesCS3B01G471300
GTTACTATGTTTAGGATGCTTTGTAGTACTTCTTATGAACCTTCATAATATATATGGGTACTTCTTTAAAAAG-------
AAGTGAATTCAGCTTTAACATTGGGGGTAAAAACAGAAGTAGGTGAAAATACAGGTTACAAGAGCACAACTAGGGTGCAG
-AATCTGACAAGATTTTTGAAATGTGATAA--AAAGATGTCACAAAGTCACAACACGAGAGTTGAAAGTGGAATAT--AC
TCCTAATAATGTAATCCCCACTGAAAATATG--GATCTTTACGCACAAGAGATCCT-GAGCT------------------
-------------------------GGTGCTTGTGTAGC-ATAGCAAAAGCCTGGC-------CATGCAGATGCAGAGCT
TCTTCCACATCACATTCGGA-AGGCGTTGACCATGGCGTCCACCACTAAACTAAGACAATTATTGCCCATTTGATA----
-----------TAT--CCCACCCGGAT-----------------------------------------------------
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----TAAGTCCCCACACCACGTACCTTTCCCTGATTAGCTTTTTCCCCAGCCG----CTGCAATCGCAAAATCCACTT--
-GCTTCCTTTTCTCCGTCGATGCGCCAGTAGTAC---TACTACTCATATAGTA---GCTG--------------------
--AGTATCTA--------------------------------TTGCTAACCACT------TAGTTAATTAGCTGGCCCAG
CAATCAGTCAGTTGTTAATTACCCTAAT----------------------------------------------------
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----------------------------------TA--------------------------------------------
----------------------------------------------------------------------------TATT
ACTTAG-----------AGTGCAGGAGCACATCTCTACCTT-GCCTTCCTCCTCGTCCTCGATCGTCCTGGTCTGTCCTG
CACCA----TATGACCCTGCGC--TGCTGCAGCTCACGGCGCGCGAGTCATAAGTCAATGCATGCCCTCGCGTCAGGTCA
ACTAATGGGGCTAGCCCACCATG----TCACACCGCACGCCGTGTCGCCCTCCGTCTTCTGCTAGCT-----GCTAGCTA
CCTATACACCTACCTTGGCAACCTTGCCTAG--------CTTGTACACATATATATACACATAACCCGGCCGGCCCCCT-
CTCTCATGCATGCCATCATCCTTACA-ATCCGGCCGGCGCATCCAC---------TCTTGGCCACCAGCCCCGTCTCGAG
TCGGTCGACGTCCACCGGCGGCATATATGGCGGCGAGCAAGGGCGCGAGGAAGAGCCTGGTGTCGAGGACCCTGGAGCGG
TGCCGATCCGGGCTGGCCAGCGGTGGCCGGTCGTCGGCGGCGGTGGCGCCCGGGTGCTTCTCGGTGTACGTTGGGCCGGA
GCGGGAGCGGTTCGTGGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGCCGCCTCCTCGACGACGCAGAGCAGGAGT
ACGGCTACGCGGCGCAGGGGCCGCTCGCGCTGCCCTGCTCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGACCAC
GACGTCCAGGACGACGACGATGGCGAGGCCGCCGTGGCCCCGTCGACGCCCATATGCGGCCTGCAGCGCGCCGGCAGCGG
GAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCTTCCTTCTTCTTCTCGCAGA
CGGCGGCTGGCGGTAGGAGGTGAGCTCTAGGCGCGCAGCTAGCTAGCAGGAGCGGCTT----------------------
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------------------------------------------------GCATGCAGAACCGAGAGGAATCTGCGCGCGCA
TACACAGATCGAGCTGCAGGTGCTTAATTTGCATATACTTTGACGTCTCAAC----------CCCACACACACGCCTAGC
TGATTTAGATTGT---------------AAAAGTGAAACGAAAGAAGATCTATTCTATGCATGCATGTAAGCGCGTGTG-
TTGGATGTTCTTTGTATTACCGATTTCATGAAAATGAAATTTGGAGGTTGAGCTCCTAAATTAGAAACAGA---------
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-AAATGTAAGTG-TGTGTGTGGGGGGGACACAAAAGAAAGAGATTAACTTTGGGTGATCATTTTGTTTGACCTATACAAG
TGGAACATGTCTC----TATGGAGTTTCGAATGTTTTTTATGACAATTTATATTGTCATGAGGATGACAATTTTAGTTTG
CAAGCACGGCAAATCCTGATGGAAAACAGAACTGGGTA-GAGTTGCCACGCTTGCTAACAAAATTTGCCATCATCGGCCA
ACAC-AATTGTCATCAAAATTGTTCGCAATTGCCATCCGCCCAGCGGACATTCGCTGGTTAAGCCGGTCCAAAATTAACT
AGTTAA-------------------------------CTCTCTCTTTTGCGTGGTAATCAACTAGTTAACTCTGGTCTTC
GG-------CTAGATAAAAACCTATACTCCCTTGATATTATATTATTATTATGCAATACTATACTATCCAGTTAAGTAGA
TATTAATATTA---------------------------------------------------------------------
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-------------------TGCAAAACTCTTGATTTGGTCAATTCCTGTCGTTCATTCTACTATG-----TTAAAAAAGG
GTGGTGATGGGCATTGACAGAATGACAGGTGTTGTCTATTCATGAGTTACCTGAAACTTTTTTAAACCAGAATCACATTT
CTAAGCATTCGTATGAATACCCAACCCGTCATGGATCTCCAAGTCAATTCATATAGTAGTATACTTCGCAGAAGTGGCAC
ACCTTCAAAAAGTTCGGTTTCACCATAGTGGTGTGCAATTATTA--TTTTTGTGAATCATGCAATTTAA
>chr3A_2
TTAT-TATGTTTAGGATGCTTTGTAGTACTTCTTATGAACCTTTATAATATGTATGGGTACTTCTTCAAAACAGAAAAGA
AAGTGAATTCAGCTTTAACATTGGGGGTGAAAACAGAAGTAGGTGAAAATACATGTTACAAGAGCACAACTAAGGTGCAG
-AATCAGACAAGATTTTTGAAATGTGATAAAAAAAGATGTCACAAAGTCACAACACGAGAGTTGAAAGTGGAATATATAC
TCCTAATAATGTAATCCCCACTGAAA-TATG--GATCTTTACGCACAAGAGATCCACGAGCT------------------
-------------------------GGTGCTTGTGTAGCCATAGCAAAACCCTAGC-------CATGCAAATGCAGAGCT
TCTTCCACATCACACTCGGA-AGGCGTTGACCATGGCGTCGACCACTAAACTAAGGCAATTATTGCCCATTTGATA----
-----------TAT--CCCACCCGGAT-----------------------------------------------------
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----GAAGTCCCCACACCACGTACCTTTCCCTGATTAGCTTTTTCCCCAGCCG----CTGCAATCACAAAATCCACTT--
-GCTTCCTTTTCTCCGTCGATGCACATGCATGGCCAGTACTACTCATATACTTCTAGCTG--------------------
--AGTATCTATTGCTAACCACTTAGTTTTTTTTTGAAACATATTGCTAACCACT------GAGTTAATTAGCCGGCCCAG
CAATAAGTCAGTAGTTAATTACCCTAAG----------------------------------------------------
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----------------------------------TATAT-----------------------------------------
----------------------------------------------------------------------------TAGT
ACTTAG-----------AGTGCAGGAGTACATCTCCACCTTTGCCTTCCTCCTCGATC----------------GTCCTG
CACCA----TATGACCCTGCGC--TGCTGCTCGCGA-------CGAGTCATAAGTCAATGCATGCCCTCGCATCAGGTCA
ACTAATGGGGCTAGCCCACCATG----TCACACCGCACGCCGTGTCGCCCTCCGTCTTCTGCTAGCT-----GCTAGCTG
C---TACACCTACCTT-------TTGCTTAG--------CTTGTACCCATATATATACACACAACCCGGCCGGCCCCCTC
CTCTCATGCATGCCATCATCCTTACA-ATCCG-CCGGCGCATCCACCACTCTTGG---------CCCGCTCCCTCTTGAG
TCGGTCGACGTTCACGGGCGGC----ATGGCGGCGAGCAAAGGCGCGAGGAAGAACCTGGTGTCGAGGACCCTGGAGCGG
TGCAGGTCCGGGCTCGCCAGCGGCGGCCGGTCGTCGGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGCCCGGA
GCGGGAGCGATTCGTGGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGCCGTCTCCTCGACGACGCCGAGCAGGAGT
ATGGCTACGCGGCGCAGGGGCCCCTCGCGCTGCCCTGCGCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGACCAC
GACGTCCACCACGACGACGACGACGAGGTCGCCTCGGCACCGTCGACGCCGATATGCGGCCTGCAGCGCGCCGGCAGCGG
GAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCGTC---CTTCTTCTCGCAGA
CGGCGGCTGGCGGTAGGAGGTGAGCTCTAGGCGCGCAGCTAGCTAGCAGGAGCGGCTT----------------------
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------------------------------------------------GCATGCAGAACCGAGAGGAATCTGCGCGAGCA
TACACAGATCGAGC---AGGTGCTTAATTTGCACATACTTAGACGTCTCAAT----------CACACACAAAC-------
----------------------------------GAAAGGAAAGAAGATCGATTCTATGCATGCATGTAAGCGCGTGTGT
TTGGTGTTTTCTTGTATTACCAGTTTCAT---------------------------------------------------
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>chr3A_80
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------ATTCAGCTTTAACTTTGGGC-TAAAAACAAAAGTAAGTGAAAATACATGTTACAAGAGGACGACTATGGTGCAA
AAATCTGACAAGATTTTTGAAATGTGATAAAAA-C-ATGTCACAAAGCCACAACACGAGAGTTGAAAGTGGAATAT--AC
TCTCAATAATTACTCCTTTCATTCCAAAATAGATGATTAACATTGTACTAACTTTAGTACAAAGTAATACAAAGTTGGGT
CATCTATTTTGGATGGAGAAAATACGGTGCATGTGTAGC-CATAGCAAAAGCCTAGCGAGGCACATGCAGATGCAGTGCT
TGTTCCACATCACATTCGGA-AGGCGTTGACCATGGCGTCGACCACTAAACTAAGGCAATTATTGCCCATTTGATA----
-----------TATATTCCGCCCGGAT-----------------------------------------------------
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----TAAGTCCCCACAGCACGTACCTTTCCC-GATTAGCTTTTTCCCTAGCCG----CTGCAATCACAAAATCCACTTGC
GGCTTCAGTTTCTCCGTTGATGCACATGCATGGCCATTGCTAATACCCTAATTA--------------------------
-----------------------------------------------------T------TAGTTAAGTAGCCGGCCCAG
CAATAAGTCAGTAGTTAATTGCCCTAAT----------------------------------------------------
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----------------------------------TAAGT-----------------------------------------
----------------------------------------------------------------------------ACGT
ACTTATTGCTTAGAGCTAGCGTAGGAGCACATCTCCACCTT-GCCTTCCTCCTCGTCCTCGATCGTCCTGGTCTGTCCTG
CACCA----TATGACCCTGCGCGCTGCAGCTCACGG-------CGAGTCATAAGTCAATGCATGCCCACGCGTCAGGTCA
ACTAATGGGGCTAGCCCACCATGCATGTCACACCGCACGCCGTGTCGCCGTCCGTCTTGAGCTAGCTAGCTAGCTAGCTA
CCTAGACCCATCT-------ACCTTGCGTAGCTTGC------GTACATATATATATACACACAACCCGGCCGGCCCCCT-
CTCTCATGCATGCCATCATCCTTACA-ATCCAGCCGGCGCATCCAC---------TCTTGGTCACCAGCCCCGTCTCGAG
TCCGTCGACGTCCACGGGCGGC----ATGGCGGCGAGCAAGGGCGCGAGGAAGAGCCTGGTGTCGAGGACGCTGGAGCGA
TGCCGGTCTGGGCTGAACAGCGGTGGCAGGTCGGCGGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGCCCGGA
GCGGGAGCGGTTTGTCGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGGCGCCTCCTCGACGACGCCGAGCAGGAGT
ACGGCTACGCGGCGCAGGGGCCCCTCGCGCTGCCCTGCGCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGACCAC
GACGTCCAGGACGACGACGACAGCGAGGCAACCGTGGCCCCGTCGACGCCGATATGCGGGCTGCAGCGCGCCGGCAGTGG
GAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCGTCCTTCTTCTTCTCGCAGA
CGGCGGCTGGCGGTAGGAGGTGAGCTATAGGCGCGCAGCTAGCTAGCAGGAGCGGG-T----------------------
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------------------------------------------------GCATGCAGAACCGAGAGGAATCTGCGCGCGCA
TACACAGATCGAGC---AGGTGCTTAATTTGCATATACTTAGACGTCTCAAC----------CCCACACACACGCCTAGC
TGATTTAGATTGT---------------AAAAGTGGAAGGAAAGAAGATCTATTCTATGCATGCATGTAAGCGCGTGTG-
TTGGATGTTCTTTGTATTACCGGTTTCATGGAAATGAAAATTGGGGCTTGAGCTCCTAAATTAGAAACAAA---------
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-AAAATGCGGGTTTATGTGTGGGATACACAA-----AAGGAGATTAACTTTGGGTGATCATTTTGTTTGATCTATACCAG
TGGAACTTGTGTTTCTTTATGGAGTATCGATCATTTTCTATGGCAGTTTATATTGTCGTGAGGATGACAATTTTAGTTTG
CAAGCACGGCAAATCCTTGCGAAAAACAGAACTGAAGCGGAGTTGCCATGCTTGCTAACTAAAATTTTCATCCTCGACGA
ACACAAATTGTCATCAAAGTCGTTCACAATTGCCATCCCCAGCGAACG--TTCGCTGGTTAAGCCGGTCCAAAATTAACT
AGTTTTTTTGTGTGGTAACTAATTAGTTAATTCGGGTCTCG---------------------------------------
GG-------CTAGATGCAAACCTATACTCCCTTGATATTAT---------------------------------------
---------TA---------------------------------------------------------------------
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-------------------TGCAAAACTATTGATTTGGTCAATTCTTGTCGTTTATTCA----ACCAGGTTTAAAAAAGG
GTTGTACTGGGTATTGACAGAATGATAGGTGTTGTCTATTCATGAGTTACCTGAAACTTTTTAAAACCTGAATCACATTT
CTAAGCACTCGTATGAATATCCGACCCGTCATGGATCTCCAAGTCAATTCATATAGTAGTATACTTCACTGAAGTGGCGC
ACCTTCAAAAAGTTCGGTTTCACCATAGTAGTGTGCAATTATTAATTTTTTGTGAATTGGGCAATTTAA
>chr3D_103
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-----------------------------AAAACAAAAGTAGGTGAAAATACATGTTACAAGAGCACAACTACGGTGCAA
AAATCTGACAAGAGTTTTGAAATGTGTGAAAAAAC-ATATCGCAAAGCCACAACACGTGAGTTCAAAGTGGAATAT--AC
TCGTAATTAAGTAACCTTCACCGAAA-TGTAGAGATCTTTTCTCAGAAGAGATTTG-TCAGTTGGTGCAT----------
------------------------------ATGTGTAGC-CATAGCAAAGCCTAGC-------GATGCAGATGCAGTGCT
TCTTCCACATCACATTCGAG-AGGCGTTGACCATGGCGTCGACCACTAAACTAAGACAATTATTGCCCATTTGATAATAC
-----------TATATCCCACCCGGAT-----------------------------------------------------
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----TAAGTCCCCACACCACGTACCTTTCCCTGATTAGCTTTTTCGCCAGCCG----CTGCAATCACAAAATCCACTT--
-GCTTCCTTTTCTCCGTCGATGCACATGCAGGGCCAGTACTACTCATATAGTACTAGCTA--------------------
--AGTATCTC--------------------------------TTGCTAACCACT------TAGTTAATTAGCCGGCCCAA
CAATATTGGTTTAGGGACTTAAAAAAGTCCCTATAAGTCCCATCTAAACAGGAGGGACTTATAGGGACTTAAAGTGATGA
TTTGGGACTTATCAAAAAAGACTCTCAGGGAGAAACTTATAGGGACTTATAGTGGTGATTTGGATCTTTTAGCATGTCAT
TTAATAACCTCTAGCCCATGATAAGTCCCTGTAAACAAACAAGTAGGGACTCGAGACTTATAAGTTGGGACTTAAAAAAG
TCCTAAGACTTATGAAACAAACAAGGCCTTATCCTA--------------------------------------------
----------------------------------------------------------------------------AATT
ACTTAG-----------AGTGCAGGAGTACATCTCCACCTTTGCCTTCCTCCTCGATC----------------GTCCTG
CACCAACCATATGACCCTGCGC--TGCTGCTCGCGA-------CGAGTCATAAGTCAATGCATGCCCTCGCTTCAGGTCA
ACTAATGGGGCTAGCCCACCATG----TCACATCGCACGCCGTGTCGCCCTCCGTCTTCAGCAAGCC-----GCTAGCTG
C---TAAACCTACCTT-------TTGCTTAG--------CTTGTACCCATATATATACACACAACGCGGCCGGCCCCCT-
CTCTCATGCATGCCATCTTGCTTACAGATCCGGCCGGCTCATCCACTCTCGGTCATCA------------CCGTCTCGAC
TCGGTCGACGTCCACCAGCCGC----ATGGCGGCGAGCAAGGGAGCGAGGAAGAGCCTGGTGTCGAGGACCCTGGAGCGG
TGCAGGTCCGGGCTGAACAGCGGCGGCAAGTCGTCGGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGCCCGGA
GCGGGAGCGGTTCTTGGTGCGCGCCGACCGCGCCGACCACCCGCTCTTCCGCCGCCTCCTCGACGACGCCGAGCAGGAGT
ACGGCTACGCGGCGAAGGGGCCCCTCACGCTGCCCTGCTCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGACCAC
GACGTCCACGATGACGACGACGGCGAGGTCGCCTCGGCGCCGACGACGCCGATTTGCGGCCTACAGCGCGGCGGCAGCGG
GAACATCAAGGTCCGGCCTGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCGTCCTTCTTCTTCTCGCAGA
CGGCGGCTGGCGGTAGGTGGTGAGCTCTAGGC------------------------------------------------
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--------------------------------------------------CTGCAGAACCGAAATGAATCTGCGCGCGCA
TACACATATCGAGC---AGGTGCTTAATTTGCATATACTT-GACGACTCAAG----------CATACACACACGCGTAGC
TGATTTAGATTGT---------------AAAAGTGAAAGGAAAGAAGATCGATTCTATGCATGCATGTAAGCGCGTGTG-
TTGGGTGTTCTTGTAT----------------------------------------------------------------
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>chr3A_104
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------------------------------AAACAAAAGTAGGTGAAAATACATGTTACAAGAGCACAACTACGGCGCAA
AAATCTGACAAGATTCTTGAAATGTGATAAAA--C-ATGTCACAAGGTCACAACACAAGAGTTGAAAGTGGAATAT--AC
TTATAATTAAGTAATCGCCACAGAAA-TATAGAGATCTTTGCTCAGAAGAGATACG-TCGCT------------------
-------------------------GGTGCATGTCTAGC-CATAGCAAAGCCTAGA-------GATGCAGATGCAGAGCT
TCTTCCACATCACAATCACG-GGGCGTT------------GACCACTAGACCGAGGCAATTATTGCCCATTTGATA----
-----------TACTACATCCGGAAAAAATCTTATAAGACCCGGGTCGTACACAGCGATCGTGAGACCGCCTGGCAAGAC
CGAATCTCAACGCACGCAGGCCAGTTTCGCTGTTTCCACTATCAAATCCTGATTCCCGTCAGTCTCGCCGAATCCCCCAA
ATCCTGAGTCCCCTTTCCTTCTCCCGTTCGCCCGCCGCCGCCGCCCACGACCACGACCGCGTTCCTCGGCGCTCCGGCAG
CTCGCCCTTGAGCGCAACTCCTCTGCTCGCTTCTCCGGCAAGCTCGCCGCGGAGTAGGCAGCTATACACATGGGGATGGA
GCTGCTGGCTGCATCTTGGCACGTTGAGAATGTGCAATAGCTCTATTGGCAGTGTTCAAATCAAGCTGCTGATACATGTG
CAAACTAGTACAAAATTGCTGGTGATCAGATAAGTTGTGTTCTGCTGATGCCTGCACATGTTGTTCTGTCAACACTGAAG
ATGATCATCAAAAGGCAGAAGGAAGACAGAAGATCCAGCAAAAAGATCAGCAGATCTCCAACTCAATATGCTGTTGTGCA
TGCCCCTGTCATGTAGTTTAGGATTTGTTGATGCTTTGTATATTTTTCTTCGGAAATTTCTCAAGTTAAGACAGGATAGT
TGATGCAGATTGTGGAGCAAATGTATTGTATAAATGAATTTGATGTACACTGTGACTAAAAGCTCCTGGTATTTGTATAA
AAGCACCTGCCATTTGAAGTTCCTTGTGAATAAACGCTAGCTCTTGGTATTTGAAGCTCCTGTGATAAAGGGGATCATTT
TTTAATATCCAATAATACGATCTGAAATGTGCATTGCTGCCTGCCTGTGATAAACGTGGGCGGTGGTGGCGAGCGAACGG
GAGAAGGAAAGAGGACTCAGGATTTGAGGGATTCGGCGAGGCCGGCGGGAATCAGGATTTGATACTGGAAACAGAGACTT
GCAAGGTGTCCTCAGTGACTCAGTCCAAGTGGATCTCACGATCGCTGTGTATAACCCGGTCTTATAGGATTTTCCCGGAT
TAAGTAAGTCCCCACAGCACGTGCCTTTCCC-GATTAGCTTTTTCCATAGCCG----CTGCAATCACAAAATCCAC----
--------TTGCTTCTTCGATGCACATGCATGGCCAGTAATAAGGCAGTAGTATCTGTTGCTAAACACTTGGTTAAGGCA
GTAGTATCTG--------------------------------TTGCTGAACACT------TGGTTAATTAGCTGGCCCAG
CAATAAGGCAGGAGTTAGTTACCCTAATAGTACCCCTCCGTTTCTTTTTAGTTTGCATATAAGATTTGGTTAAAGTCAAA
CTTTATTAAC----------------------------------------------------------------------
----------------------------------------------------------TTTAACTAAGGTCTTAGAAAAA
AACCAAGATTCACAATATGAAATCAATATTGTTAAATGCATCATGAAATTAATTTTCATACCATATAGTTTTAATATTAT
AGATATTAATATTTTTTTTCTATAAAGTTTGACTTTGATCAAATTTTATATGCAGACTAAAAAAAAACCGGGGGAGTATT
ACTTAG-----------AGTGCACGAGTACATCTCCACCCTTGCCTTCCTCCTCGATC----------------GTCCAG
CACCA----TATGACCCTGCGC--TGGTGCTAGCTA-------CGTATCCACG---------------------------
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-----------ACCTTGGCAACCTTGCTTAGCTTGT----------------------ACATAACCCGACCGGCCCCCT-
CTCTCATGCATGCCATCATCCTTACA-ATCCGGCCATCACATCCAC---------TCTTGGCCACCAGCCCCGTCTCGAG
TCGGTCGACGTCCACCGGCGGCATATATGGCGGCGAGCAAGGGCGCGAGGAAGAGCCTGGTGTCGAGGACCCTGGAGCGG
TGCAGGTCCGCGCTGAACAGCGGCGGCCGGTCGTCCGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGGCCGGA
GTGGGAGCGGTTCGAGGTGCGCGCCGACCGCGCCGACCACCCGCTCTTCCGGCGCCTCCTCGACGACGCCGAGCAGGAGT
ACGGCTACGCGGCGCAGGGGCCCCTCGCCCTGCCCTGCGCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGACCAC
GACGTTCAC-ATGACGACGACGGCGAGGTCGCCGCGGCGCCGTCATCGCCGATATGCGGCCTGCAGCGCGCCGGCAGCGG
GAACGGCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGTCTCCGTCCTTCTTCTTCTCGCCGA
CGGCGGCTGGCGGCAGGAGGTGAGCTCTAGGCGCGCATGAC-----------CGGCTT----------------------
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------------------------------------------------GCATGCAGAACCGAGAGGAATCTGCGCGCGCA
TACACAGATAGAAC---AGGTGCTTAATTTGCATATACTTAGACGTAAGTCTCAACCACACACACACACAGACGCCTAGC
TGATTTAGATTGTACTGTATATTGTAAAA--AGTGAAAGGAAAGAAGATCTATTCTGTGCATGCATGTAAGCGCGTGTG-
TTGGATGTTCTTTGTATTACCGGTTTCATGGAAATGAAAATTGGAGCTTGAGCTCCTAAATTAGAAACAAAAAAGAGTCA
ATTGCACCGGTGGTGTTTGAACTTGCCGCAAACGGTCACTTTGGTGCTAGAACTTGTGGCATACATTGAACTGGTACAAA
AATTTGACTCGGCCGTGCAAATACGGTGCAAATCATGTTTGGATACAAAATGATGCTGACTTGGCATGTCAATGTAGCAT
CGGGCCTGCTTTCAGTGACGGGAAGGCAGAGCGGAGTCCGTGTGGCCTTTTTTTTTTTGCAAAACCTTCACTTGTATTGG
CATTTTATTTTTTTCAGCTCTACAAGGGGTGGGTGTTAGTGAAGTGTGAAAATTAACCAAAAATGAAGCTCCCTTGTCTC
GAACCCTCGACCATTCCTTGCACAATAGGACGTAGCCACTACAACTTCTAGTATTCACGTAACAAAATGGATAAACAAAT
TTAGTGGTGCCACAAAATGGATAACTACACTTAATGTAGCGGAACAAACATGCTCGTGGACCTAGAATGGACCGTGATGA
ATGTGGATGCAGCCCATTTGCACCTGTAGTTTTTTAGAAATTTGTAAAAGGTATGTAAATTATAACCTCAGTAATAAAAA
TAACGTTTAATTATTTGTGTTGTATAAATATTATACATACAAGCTAAATAACTTACGTTTCATACTTGTTCACGTATTAT
TTTAAAAGTATTCATATATTTAAAATAATATTCATTAATTACAATTTTTTGGATAATTAATACAATACAAGTACTTTAAC
ATTAAAATTCCAAAGTATTTTTCTAACTCTACAAAGTTTTTCATAATTATATGCACATTTTAATAGTTCAATGTTTGTAA
AAATAAATATTCATAATTTAAATTTAAATTTTCATATGAATATACATTCGTGGCTAATTTTTAAATTATATAATATTTTT
GAAAATAAATCACGTATGAAAATTATACCGCATGAATGTTTGTATTCATCATTTTGTATAATTTATATATAAGTTACAAG
TTTATATTATTTTGTATCCATTAAATATTTATTTAATAAATATTTAAATGTTCGTATTTACCAAACATTTTTATAATACA
TGGGCGTACATTTAAATAATTTAATTTACTAATCATTGTTTGTATATAATATACGCACATTATTTTTATTACTTACGTTT
TACAAACATATTAAAAAGCTAGTGCGTGCAAAATGTGCCGCGCTATTTGTAGCTCATAGAAGTCCCAGATGCGTCCTCCT
CAGCGGCGAATCCAAGGGGCAGGGGCAGGCTTGGATGGGCTCAAGCCTGCCCTCCAAAATCGAACAATTTTTTTTATTAC
TACTCATCAGTGCAGCCCAGCCCAGCCCAAAAAACACAGGCCCATATCTCGTCCTGGTCATCAGCTCTCGCCCACCAATT
CCACGTGCGTGCAACACATCTCGACGCCTCACCCATCCCAGCCGCATCGCAACCCTAGCCGCCGCCGGAGCAGGCCGCGA
CGCCGCCCACGGACGCCGCCGGAGCCAGCTAGGGCGGACTGCCGGAGCCCTGCGTCAGGGGCTCGGCTGCTCGGGGCGTC
CAGAAGGCAGTGGCTGGGAGCGCGCCGGCTCATCAGGTCCCCAAGACCCCAACCCCAACGCATTTGACTAACGGAGCCCA
GAGGTTGTTTTTCCTCTTAAGTCTTAACCAATGCTGGCTCCTAGTATTGGCTTTTTTTGCAGAATTCCAGTAGCATATTT
AGCTTGCCCAGTTTAGTTCTAGACTTCTATTTATAATCATTGAATTATTTCTATGTTTGTTTGTAGAAATGAAAAGGAAG
ACTTTGCACAGTTGGTTTGCAAGTAGTTCGAACACCCCCCATGTTGTTGTTCCTGAACCTGAAGCAACCCAAATTCCAAA
CTTGGACCCCCTTATTCGAACAAATCAGAGCAGTAACCCCCAATCGATGAGAATACTACCCCCCTTCAAACGAGAGCAGC
AAACCCCCAATTGATGAGAGCATAAACCAACCACAAACAACAAGGCTTCTTATCCAAGAATTTCACCCAAGTCAAATTTT
TGGTGATCCGGCAGATCGAATACCAATAGAAGATTATGCCCCTGAAATTCGAAGTGAAGTTAGAAGAGCTTATTTGTTTA
AAGGAAGAAACAAAGCTGAAGGGCATAATTTTGAAATCACATTGAATGGTACAATCCGGAGATCTTTTCAACCACAATGG
CTGATTTCTTCAATTATCTCCCCTTGATAGTGACTCAGCTGGGTTCTTCTTGCAAGAGAAAAGATGCATTACTTGCAAAG
CATCATGATGATTTGATGAAATTGATGGAGCATGGTAAGATCTCAGCTGGAACTGGGTTACATCAAGAAACTGACCTATC
TAGACCAGGAGCTACTCGTTGGGGCTCACATCTTAGAACCTTGCTTCGTATTCACGCAATGTGGAATGCAGTAGTCGATG
TGCTAGCGGATTAGGATAAAATTGCCTCTTTTTTTCTTCTAAAAGGCATGGTAAAGTTTGAGCTTATTTGCACAAACGGA
TTAGGATAAAATTGCCTTTTTTCTTCTTCTAAAAGGCGTTTAATTTACTCGTCTTTAACTTTGAGCCTCTCCTCCATTTT
CTTTCTGGATTCGCCGCTGGTCCTCCTTGTACTACATTAAGGACTGTTATCAGTATTTTTCATTGCGAACGTGAATGGTG
GAGTTGCTTGGACGGCTAGCTATCCAGCAATTGGTCTCAAGTTCGAGAGTCCGATCCGTTTTTATTTTCATGTATTGACA
GGTGGGCCCCACGCGTCATAGAGTCAAAATGAAATGGCAGCTGTTGCGTTGATAGGGGCTTTTTGTGAGAAATAATTTTT
TTTGCGGGTGCTTTCGCAAAAAAAGGCCAAAGACCTCTACGCCTTCCAGTCACTGTCAGTGGGCCCCATGCCACGCTGGC
GCGCCAAGTCAACATTGATTTCGTACCCAAATGTGATTAGCACCGTATTTGCATGTTCGAGCCAAGTTGTTGCATCAGTT
CAATGTATGTCGCAAGTTCTAGCACCAAAGTGATCGTTTGCGCCAAGTTTAAGCATCACTGGTGTAATTGACTCAACAAA
GAAATGTAAGTG-TATGTGTGGGATACAGAA-----GAAGAGATTAACTTTGAGTGATCATTTTGTTTGATCTATACGAG
TGGAACATGTGTTTCTGCATGAAGTATCAAACATTTTTTATGACAATTTATTTTGTTGCGAGGATGTCAATTATAGTTTG
CAAGCACGACTAATCCTGGCGAAAAAGAGAACTGAAGTGGAGTTGTCATGCTTGCTAATGAAATTTGTCATCCTCAGCCA
ACACAAATTGCCTTCAAAATCGTTTGCAATTGTCATCCCCCAGCAACG--TTCGCTGGTTAAGCCGCTCCAAAATTAACA
AGTTAA-------------------------------CTCG---------------------------------------
GG-------CAAGATGCAAACCTGTACTCCCTTGATATTAT---------------------------------------
---------TATGCAATACTACTATACCATCCAGTTA-------------------------------------------
--------------------------------------------------------------------------------
--AGTAGATATTCATATTATGCAAAATTCTTGATTTGGTCAATTCTTGTCGTCTATTCTATCTACCAGGTTAGAAAAGGG
GTTGTACTGGGTATTGACAGAATGACAGGTGTTGTCTATTCATGAGTTACCTAAAAATTTATTAAAACAAAATCACATTT
CTAAGCATTTGTATG---ACCCAAACATTCATGGATTTCCAAGTCAATTCATATAGTA---TACTTCACTGAAGTGGCCC
GCCTTCAAAAGGTTCGGTTTCACCACAGTAGTGTGCAATT-----------------------------
>chr3B_294
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TGTGTAGC-CATAGCAAAGCCTAGC-------GATGCAGATGCAGTGCT
TCTTCCACATCACATTCGGG-CGGCGTTGACCATGGCGTCGACCACTAAACTAAGACAATTATTGCCCATTTGATAATAC
TACTACATGTCTACATCCCACCCGGAT-----------------------------------------------------
--------------------------------------------------------------------------------
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----TAAGTAGCCACACCACGTACCTTTCCC-GATTAGCTTTTCCCCAGCCGATTA------------------------
-GCTTCCTTTTCTCCGTCGATGCACATGCAGGGCCAGTACTACTCATATAGTACTAGCTG--------------------
--AGTATCTA--------------------------------TTGCTAACCACT------TAGTTAATTAGCCGGCCC--
---TAAGTCAGTTGTTAATTACCCTAAT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TG--------------------------------------------
----------------------------------------------------------------------------TATT
ACTTAG-----------AGTGTAGGAGTACATCTCCCCCTTTGCCTTCCTCCTCGATC----------------GTCCTG
CACCA----TATGACCCTGCGC--TGCTGCTCGCGA-------CGAGTCATAAGTCAATGCATGCCCTCGCTTCAGGTCA
ACTTATGGGGCTAGCCCACCATG----TCACACCGCACGCCATGTCGCCCTCCGTCTTCAGCTAGCC-----GCTAGCTG
C---TGCACCTACCTT-------TTGCTTAGCTTGTAGCCTTGTACCCATATATATACACACAACGCGGCCGGCCCCCT-
CTCTCATGCATGCCATCTTGCTTACA-ATCCGGCCGGCGCATCCGC---------TCA------------CCGTCTCGAC
TCGGTCGACGTCCACCAGCGGC----ATGGCGGCGAGCAAGGGAGCAAGGAAGAGCCTGGTGTCGAGGACCCTGGAGCGG
TGCAGGTCCGGGCTGAACAGCGGCGGCAAGTCGTCGGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGCCCGGA
GCGGGAGCGGTTCGTGGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGCCGCCTCCTCGACGACGCAGAGCAGGAGT
ACGGCTACGCGGCGCAGGGGCCGCTCGCGCTGCCCTGCTCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGACCAC
GACGTCCAGGACGACGACGATGGCGAGGCCGCCGTGGCCCCGTCGACGCCCATATGCGGCCTGCAGGGCGCCGGCAGCGG
GAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCTTCCTTCTTCTTCTCGCAGA
CGGCGGCTGGCGGTAGGAGGTGAGCTCTAGGCGCGCAGAGATTTCAACAAGTGACCACCCGCTCTTCCGCCGCCTCCTCG
ACGACGCCGAGCAGGAGTACGGCTACGCGGCGCAGGGGCCCCTCACGCTGCCCTGCTCCGTCGACGCCTTCCTCGACGTG
CTCTGGCACATGGACCACGACGTCCACGATGACGACGACGGCGAGGTCGCCTCGGCGCCGACGACGCCGATTTGCGGCCT
ACAGCGCGGCGGCAGCGGGAACATCAAGGTCCGGCCTGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCGT
CCTTCTTCTTCTCGCAGACGGCGGCTGGCGGTAGGTGGTGAGCTCTAGGCCTGCAGAACCGAAATGAATCTGGGCGCGCA
TACACAGATCGAGC---AGATGCTTAACTTGCATATACTTAGACGACTCAAG----------CATACACACACGCGTAGC
TGATTTAGATTGTA-------------AAAAAGTGAAAGGAAAGAAGATCGATTCTATGCATGCATGTAAGCGCGTGTG-
TTGGGTGTTCTTGTATGACC------------------------------------------------------------
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>chr3D_319
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----------------------------------------------------------------ATGCAGATGCAGTGCT
TCTTCCACGTCACATTCGGGAAGGGGTTGACCATGGCGTCCACCACTAAACAAAGGCAATTATTGCCCATTTGATA----
-----------TACACCATGA--GGAT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----TAAGTCCCCACACCACGTACCTTTCCC-GATTAGCTTTTTCCCTAGCTAGCTACTGCAATCACAAAATCCAC----
--------TTGCTTCTTCGATGCACATGCATGGCCAGTACTACTCATATAGCTA-----G--------------------
--AGTGTATA--------------------------------TTGCTAATACCCACTTACTAGTTAATAAGCCGGCTTAG
CAATAAGTCAGTAGTTAATTACT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CTAAG-----------AGTGCAGGAGCACATCTCCTCCTT-GCCTTCCTCCTCGTCCTCGATCGTCCTGGTCTGTCCTG
CACCA----TATGACCCTGCGC--TGCAGCTCACGG-------CGAGTCACAAGTCAATGCATGCCCTCGCGTCGGGTCA
ACTAATGGGGCTAGCCCACCATG----TCACACCGCACGCCGTGTCGCCCTCCGTCTTCAGCTAGCT-----GCTAGCTG
C---TACACCTACCTT-------TTGCTTAG--------CTTGTACCCATATATATACACACAACCCGGCCGGCCCCCT-
CTTTCATGCATGCCATCATCCTTGCA-AGGCAT-------ATCCACCACTCTTGG---------CCACATAACCCGGGCG
GCGCA-----TCAACCGGCAGCATATATGGCGGCGAGCAAGGGCGCGAGGAAGAGCCTGGTGTCGAGGACCCTGGAGCGG
TGCCGATCCGGGCTGGCCAGCGGTGGCCGGTCGTCGGCGGCGGTGGCGCCGGGGTGCTTCTCGGTGTACGTGGGACCGGA
GCGGGAGCGGTTCGTGGTGCGCGCCGACCGCGCCAACCACCCGCTCTTCCGCCGCCTCCTCGACGACGCCGAGCAGGAGT
ACGGCTACGCGGCGCAGGGGCCCCTCGCGCTGCCCTGCTCCGTCGACGCCTTCCTCGACGTGCTCTGGCACATGGACCAC
GACGTCCAAGACGACGACGACGGCGAGGCCGCCGTGGCCCCGTCGACGCCCATATGCGGCCTGCAGCGCGCCGGCAGCGG
GAACATCAAGGTCCGGCCGGCGGGGTACCGGGTGCTCAGCCCGGCCAAGTCCACGCCGGCGTCCTTCTTCTTCTCGCAGA
CGGCGGCTGGCGGTAGGAGGTGAGCTCTAGGCGCGCAGGTAGCTAGCAGGAGCGTCTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GCATGCAGAACCGAGAGGAATCTGCGGGCGCA
TACACAGATCGAGC---AGGTGCTTAATTTGCATATATTTAGACGCCTCAAC----------CACACACACACGCCTAGC
TGATTTAGATTGTA-------------AA--AGTGAAAGGAAAGAAGATCGATTCTATGCATGCATGTAAGCGCGTGTG-
TTGGAAGTTCTTTGTATTGCCGGTTTCACGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGT--------------------------------------------------------------------------
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------------------------GGGATACACAAGAAAGAGATTAACTTTGGATGGTCATTTTGTTTGATCTACACAAG
TGGACCATGTGTTTCTTTATGAAGTATCGAACATTTTTTATGGCAATTTATATTGTCGCGGGTATTATAATTTTAGTTTA
CAAGCATGGCAAACCCTGGCGAAAAACAGAACTGAAGCGGAGTTGCCATACTTGCTAACAAAAATTTCATCCTCGGTCAA
ACACAAATTGTCATCAATTGCCATTCCT----------CCAGCAAACT--TTCACTGGTTAAGCCGGTCCAAAAATAACT
AGTTAA-------------------------------CTCG---------------------------------------
GGTCTTGGGCTAGATGCAAACCTATACTCCCTTAATATTAT---------------------------------------
---------TATGCAGTACTTCCTCCGTTTCAAAATAGATGACTCAACTTTGTACTAACTTTAGTACAAAGTATCCAGTT
AAGTACTCCCTCCGTCCCATAATATAAGAGCGTTTTCACACTACTTTAGTGTGAAAACGCTCTTATATTATGGGACGGAG
GGAGTAGATATTAACATTATC--AAATTCTTGATTTGGTCAATTCTTGTCGTTTATCCTATCAGG-----TTAAAAAAGG
GTTGTGCTGAGTATTGACAGAATGACAGGTGTTGTCTATTCATGAGTTACCTCATACTTTTTAAAACCAGAATCACATTT
CTATACATTCGTATGAACACCCAAACCGTCATGGATCTCCAAGTCAACTCATATAGTAGTATACTTCACTGAAGTGGCAC
GCCTTCAAAAAGTTCGATTTCACCAATACTAGTTTGCAA------------------------------
>SNPs
S-SSS--------------------------------------S-------S--------------S----SS-------
-----------------------------------------------------S------------------S-------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------S--------------
-----------------------S-SS-S--SS-----------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------S--------------------------------------------
------------------------------SSSSS-SSSSSSS-------------------------------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S--------------------S--------
--------------------------------------------------------------------------------
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--------------SSS-----------------------S---------------------------------------
--------------------------------------S-----------------------------------------
----------------------S-------S--------S------S----------------------S----------
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--------------S--------S--------S-------------------------------------S---------
----------S-S------------S-----SS------------------------S----------------------
------------------SS-S------------SSSS----------S-----------------------S-------
--------------------S-----------------S--SS-SSSSSS------------------------------
----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---------------SS------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S-------S------SS-S----------------
--S---S----S--------------------------------------------------------------------
-------------------------------------------------------------------S-S----------
-----------------------------S---------------------------SSS---------
>forward_1624
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----TCCTTTTCTCCGTCGATGCG--------------------------------------------------------
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>reverse_6918
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-------------------------------------AGAGTTGCCACGCTTGCTAA-----------------------
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---------------------------------------------------------------------
