Multiple sequence alignment - TraesCS3B01G469600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G469600 chr3B 100.000 2665 0 0 1 2665 716340873 716338209 0.000000e+00 4922
1 TraesCS3B01G469600 chr3B 96.040 101 3 1 1 101 504483283 504483382 2.120000e-36 163
2 TraesCS3B01G469600 chr3D 91.133 1545 78 23 393 1906 540937567 540936051 0.000000e+00 2039
3 TraesCS3B01G469600 chr3D 91.200 250 20 2 104 352 327608010 327607762 3.290000e-89 339
4 TraesCS3B01G469600 chr3A 89.623 1590 87 35 346 1906 676108757 676107217 0.000000e+00 1951
5 TraesCS3B01G469600 chr3A 87.582 765 81 11 1905 2665 617066003 617066757 0.000000e+00 874
6 TraesCS3B01G469600 chr2D 89.660 764 69 8 1905 2665 502524863 502524107 0.000000e+00 965
7 TraesCS3B01G469600 chr2B 89.635 685 59 8 1984 2665 363743995 363744670 0.000000e+00 861
8 TraesCS3B01G469600 chr6A 86.815 766 79 17 1905 2665 500503420 500502672 0.000000e+00 835
9 TraesCS3B01G469600 chr4A 86.418 751 84 14 1905 2652 149092881 149092146 0.000000e+00 806
10 TraesCS3B01G469600 chr4A 84.935 770 101 12 1902 2665 56720635 56719875 0.000000e+00 765
11 TraesCS3B01G469600 chr4A 95.050 101 5 0 1 101 717814503 717814403 2.750000e-35 159
12 TraesCS3B01G469600 chr4D 85.438 776 90 19 1905 2665 396971004 396971771 0.000000e+00 785
13 TraesCS3B01G469600 chr4D 84.655 782 98 17 1893 2665 25983479 25984247 0.000000e+00 760
14 TraesCS3B01G469600 chr1A 84.407 776 100 15 1903 2664 534248558 534249326 0.000000e+00 743
15 TraesCS3B01G469600 chr7B 93.548 248 15 1 101 347 693273297 693273544 4.190000e-98 368
16 TraesCS3B01G469600 chr7B 94.286 105 5 1 1 105 368426031 368425928 2.750000e-35 159
17 TraesCS3B01G469600 chr7B 95.833 96 4 0 6 101 77436335 77436240 3.550000e-34 156
18 TraesCS3B01G469600 chr7D 91.498 247 20 1 101 346 569219138 569218892 3.290000e-89 339
19 TraesCS3B01G469600 chr7A 89.431 246 24 2 101 345 664513727 664513971 2.580000e-80 309
20 TraesCS3B01G469600 chr1B 94.624 186 10 0 162 347 638887887 638887702 3.360000e-74 289
21 TraesCS3B01G469600 chr1B 96.939 98 3 0 1 98 615210752 615210849 5.900000e-37 165
22 TraesCS3B01G469600 chr1B 96.000 100 3 1 1 100 612809978 612809880 7.630000e-36 161
23 TraesCS3B01G469600 chr5B 97.000 100 3 0 1 100 703108893 703108992 4.560000e-38 169
24 TraesCS3B01G469600 chr5B 94.444 108 4 2 1 107 31229775 31229669 5.900000e-37 165
25 TraesCS3B01G469600 chr5B 94.444 108 4 2 1 107 31322938 31322832 5.900000e-37 165
26 TraesCS3B01G469600 chrUn 97.917 96 2 0 5 100 42102672 42102767 1.640000e-37 167
27 TraesCS3B01G469600 chrUn 95.146 103 2 3 7 106 402131806 402131704 2.750000e-35 159
28 TraesCS3B01G469600 chrUn 95.146 103 2 3 7 106 475586674 475586776 2.750000e-35 159
29 TraesCS3B01G469600 chr6B 97.000 100 2 1 1 100 154821983 154821885 1.640000e-37 167
30 TraesCS3B01G469600 chr6B 96.078 102 4 0 1 102 542923320 542923219 1.640000e-37 167
31 TraesCS3B01G469600 chr6B 96.939 98 3 0 1 98 650953009 650953106 5.900000e-37 165
32 TraesCS3B01G469600 chr6B 96.040 101 3 1 1 101 75958782 75958683 2.120000e-36 163
33 TraesCS3B01G469600 chr5D 95.050 101 5 0 1 101 528552306 528552206 2.750000e-35 159
34 TraesCS3B01G469600 chr4B 94.059 101 6 0 1 101 522306645 522306745 1.280000e-33 154
35 TraesCS3B01G469600 chr4B 94.059 101 5 1 1 101 664535678 664535777 4.590000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G469600 chr3B 716338209 716340873 2664 True 4922 4922 100.000 1 2665 1 chr3B.!!$R1 2664
1 TraesCS3B01G469600 chr3D 540936051 540937567 1516 True 2039 2039 91.133 393 1906 1 chr3D.!!$R2 1513
2 TraesCS3B01G469600 chr3A 676107217 676108757 1540 True 1951 1951 89.623 346 1906 1 chr3A.!!$R1 1560
3 TraesCS3B01G469600 chr3A 617066003 617066757 754 False 874 874 87.582 1905 2665 1 chr3A.!!$F1 760
4 TraesCS3B01G469600 chr2D 502524107 502524863 756 True 965 965 89.660 1905 2665 1 chr2D.!!$R1 760
5 TraesCS3B01G469600 chr2B 363743995 363744670 675 False 861 861 89.635 1984 2665 1 chr2B.!!$F1 681
6 TraesCS3B01G469600 chr6A 500502672 500503420 748 True 835 835 86.815 1905 2665 1 chr6A.!!$R1 760
7 TraesCS3B01G469600 chr4A 149092146 149092881 735 True 806 806 86.418 1905 2652 1 chr4A.!!$R2 747
8 TraesCS3B01G469600 chr4A 56719875 56720635 760 True 765 765 84.935 1902 2665 1 chr4A.!!$R1 763
9 TraesCS3B01G469600 chr4D 396971004 396971771 767 False 785 785 85.438 1905 2665 1 chr4D.!!$F2 760
10 TraesCS3B01G469600 chr4D 25983479 25984247 768 False 760 760 84.655 1893 2665 1 chr4D.!!$F1 772
11 TraesCS3B01G469600 chr1A 534248558 534249326 768 False 743 743 84.407 1903 2664 1 chr1A.!!$F1 761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 343 0.101399 CGGGAGGAGATCAGAACACG 59.899 60.0 0.0 0.0 0.0 4.49 F
343 344 0.179097 GGGAGGAGATCAGAACACGC 60.179 60.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 1480 0.249489 CCGTCGCTCCTTATCCTTGG 60.249 60.0 0.00 0.0 0.00 3.61 R
1784 1800 0.318441 TTCTGGTCTGACGAAGCAGG 59.682 55.0 10.52 0.0 41.45 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.593196 TTTTCTCTGCGTGTTCCTGG 58.407 50.000 0.00 0.00 0.00 4.45
27 28 0.250295 TTTCTCTGCGTGTTCCTGGG 60.250 55.000 0.00 0.00 0.00 4.45
28 29 2.731691 TTCTCTGCGTGTTCCTGGGC 62.732 60.000 0.00 0.00 0.00 5.36
29 30 4.329545 TCTGCGTGTTCCTGGGCC 62.330 66.667 0.00 0.00 0.00 5.80
43 44 4.256180 GGCCGGCCCACCAGATAG 62.256 72.222 36.64 0.00 34.57 2.08
44 45 4.937431 GCCGGCCCACCAGATAGC 62.937 72.222 18.11 0.00 34.57 2.97
45 46 4.609018 CCGGCCCACCAGATAGCG 62.609 72.222 0.00 0.00 34.57 4.26
46 47 3.536917 CGGCCCACCAGATAGCGA 61.537 66.667 0.00 0.00 34.57 4.93
47 48 2.109181 GGCCCACCAGATAGCGAC 59.891 66.667 0.00 0.00 35.26 5.19
48 49 2.731571 GGCCCACCAGATAGCGACA 61.732 63.158 0.00 0.00 35.26 4.35
49 50 1.227380 GCCCACCAGATAGCGACAG 60.227 63.158 0.00 0.00 0.00 3.51
50 51 1.961180 GCCCACCAGATAGCGACAGT 61.961 60.000 0.00 0.00 0.00 3.55
51 52 0.179100 CCCACCAGATAGCGACAGTG 60.179 60.000 0.00 0.00 0.00 3.66
52 53 0.179100 CCACCAGATAGCGACAGTGG 60.179 60.000 0.00 0.00 38.89 4.00
53 54 0.179100 CACCAGATAGCGACAGTGGG 60.179 60.000 0.00 0.00 32.13 4.61
54 55 1.330655 ACCAGATAGCGACAGTGGGG 61.331 60.000 0.00 0.00 32.13 4.96
55 56 1.443407 CAGATAGCGACAGTGGGGG 59.557 63.158 0.00 0.00 0.00 5.40
56 57 2.109181 GATAGCGACAGTGGGGGC 59.891 66.667 0.00 0.00 0.00 5.80
57 58 3.462199 GATAGCGACAGTGGGGGCC 62.462 68.421 0.00 0.00 0.00 5.80
61 62 3.953775 CGACAGTGGGGGCCAGTT 61.954 66.667 4.39 0.00 34.53 3.16
62 63 2.282462 GACAGTGGGGGCCAGTTG 60.282 66.667 4.39 0.00 34.53 3.16
63 64 4.603535 ACAGTGGGGGCCAGTTGC 62.604 66.667 4.39 0.00 34.53 4.17
72 73 2.746277 GCCAGTTGCCTGTACCGG 60.746 66.667 0.00 0.00 36.95 5.28
79 80 2.125431 GCCTGTACCGGCGCTTAA 60.125 61.111 12.88 0.00 40.79 1.85
80 81 1.523032 GCCTGTACCGGCGCTTAAT 60.523 57.895 12.88 0.00 40.79 1.40
81 82 1.772063 GCCTGTACCGGCGCTTAATG 61.772 60.000 12.88 0.00 40.79 1.90
82 83 1.641677 CTGTACCGGCGCTTAATGC 59.358 57.895 7.64 0.00 38.57 3.56
93 94 2.074547 GCTTAATGCGCCGTATAGGA 57.925 50.000 4.18 0.00 45.00 2.94
94 95 1.725164 GCTTAATGCGCCGTATAGGAC 59.275 52.381 4.18 0.00 45.00 3.85
95 96 2.334838 CTTAATGCGCCGTATAGGACC 58.665 52.381 4.18 0.00 45.00 4.46
96 97 1.624336 TAATGCGCCGTATAGGACCT 58.376 50.000 4.18 0.00 45.00 3.85
97 98 0.317479 AATGCGCCGTATAGGACCTC 59.683 55.000 4.18 0.00 45.00 3.85
98 99 1.533469 ATGCGCCGTATAGGACCTCC 61.533 60.000 4.18 0.00 45.00 4.30
99 100 2.928741 GCGCCGTATAGGACCTCCC 61.929 68.421 0.00 0.00 45.00 4.30
100 101 2.273912 CGCCGTATAGGACCTCCCC 61.274 68.421 0.00 0.00 45.00 4.81
101 102 1.912264 GCCGTATAGGACCTCCCCC 60.912 68.421 0.00 0.00 45.00 5.40
102 103 1.859234 CCGTATAGGACCTCCCCCT 59.141 63.158 0.00 0.00 45.00 4.79
103 104 0.542232 CCGTATAGGACCTCCCCCTG 60.542 65.000 0.00 0.00 45.00 4.45
104 105 0.187851 CGTATAGGACCTCCCCCTGT 59.812 60.000 0.00 0.00 35.30 4.00
105 106 1.426598 CGTATAGGACCTCCCCCTGTA 59.573 57.143 0.00 0.00 35.30 2.74
106 107 2.554785 CGTATAGGACCTCCCCCTGTAG 60.555 59.091 0.00 0.00 35.30 2.74
107 108 0.191314 ATAGGACCTCCCCCTGTAGC 59.809 60.000 0.00 0.00 35.30 3.58
108 109 2.294170 TAGGACCTCCCCCTGTAGCG 62.294 65.000 0.00 0.00 35.30 4.26
109 110 2.043248 GACCTCCCCCTGTAGCGA 60.043 66.667 0.00 0.00 0.00 4.93
110 111 1.457831 GACCTCCCCCTGTAGCGAT 60.458 63.158 0.00 0.00 0.00 4.58
111 112 0.178970 GACCTCCCCCTGTAGCGATA 60.179 60.000 0.00 0.00 0.00 2.92
112 113 0.178958 ACCTCCCCCTGTAGCGATAG 60.179 60.000 0.00 0.00 0.00 2.08
113 114 0.900647 CCTCCCCCTGTAGCGATAGG 60.901 65.000 2.43 2.43 33.74 2.57
128 129 3.429207 GCGATAGGTTCTAATTTCCGAGC 59.571 47.826 0.00 0.00 0.00 5.03
129 130 3.669122 CGATAGGTTCTAATTTCCGAGCG 59.331 47.826 0.00 0.00 31.03 5.03
130 131 4.618965 GATAGGTTCTAATTTCCGAGCGT 58.381 43.478 0.00 0.00 0.00 5.07
131 132 5.561532 CGATAGGTTCTAATTTCCGAGCGTA 60.562 44.000 0.00 0.00 32.89 4.42
132 133 3.778618 AGGTTCTAATTTCCGAGCGTAC 58.221 45.455 0.00 0.00 0.00 3.67
133 134 3.446516 AGGTTCTAATTTCCGAGCGTACT 59.553 43.478 0.00 0.00 0.00 2.73
134 135 3.795639 GGTTCTAATTTCCGAGCGTACTC 59.204 47.826 0.00 0.00 39.75 2.59
135 136 4.418392 GTTCTAATTTCCGAGCGTACTCA 58.582 43.478 0.00 0.00 43.66 3.41
136 137 4.288670 TCTAATTTCCGAGCGTACTCAG 57.711 45.455 0.00 0.00 43.66 3.35
137 138 1.641577 AATTTCCGAGCGTACTCAGC 58.358 50.000 0.00 0.00 43.66 4.26
138 139 0.530744 ATTTCCGAGCGTACTCAGCA 59.469 50.000 0.00 0.00 43.66 4.41
139 140 0.315886 TTTCCGAGCGTACTCAGCAA 59.684 50.000 0.00 0.00 43.66 3.91
140 141 0.315886 TTCCGAGCGTACTCAGCAAA 59.684 50.000 0.00 0.00 43.66 3.68
141 142 0.388134 TCCGAGCGTACTCAGCAAAC 60.388 55.000 0.00 0.00 43.66 2.93
142 143 1.352156 CCGAGCGTACTCAGCAAACC 61.352 60.000 0.00 0.00 43.66 3.27
143 144 1.674611 CGAGCGTACTCAGCAAACCG 61.675 60.000 0.00 0.00 43.66 4.44
144 145 0.666577 GAGCGTACTCAGCAAACCGT 60.667 55.000 0.00 0.00 42.93 4.83
145 146 0.249741 AGCGTACTCAGCAAACCGTT 60.250 50.000 0.00 0.00 37.01 4.44
146 147 0.584876 GCGTACTCAGCAAACCGTTT 59.415 50.000 0.00 0.00 34.19 3.60
147 148 1.794116 GCGTACTCAGCAAACCGTTTA 59.206 47.619 0.00 0.00 34.19 2.01
148 149 2.414138 GCGTACTCAGCAAACCGTTTAT 59.586 45.455 0.00 0.00 34.19 1.40
149 150 3.120442 GCGTACTCAGCAAACCGTTTATT 60.120 43.478 0.00 0.00 34.19 1.40
150 151 4.612033 GCGTACTCAGCAAACCGTTTATTT 60.612 41.667 0.00 0.00 34.19 1.40
151 152 5.389725 GCGTACTCAGCAAACCGTTTATTTA 60.390 40.000 0.00 0.00 34.19 1.40
152 153 6.238508 CGTACTCAGCAAACCGTTTATTTAG 58.761 40.000 0.00 0.00 0.00 1.85
153 154 5.043189 ACTCAGCAAACCGTTTATTTAGC 57.957 39.130 0.00 0.00 0.00 3.09
154 155 4.073169 TCAGCAAACCGTTTATTTAGCG 57.927 40.909 0.00 0.00 0.00 4.26
159 160 3.909957 CCGTTTATTTAGCGGTGGC 57.090 52.632 0.00 0.00 40.53 5.01
160 161 1.088306 CCGTTTATTTAGCGGTGGCA 58.912 50.000 0.00 0.00 43.41 4.92
161 162 1.063469 CCGTTTATTTAGCGGTGGCAG 59.937 52.381 0.00 0.00 43.41 4.85
162 163 1.063469 CGTTTATTTAGCGGTGGCAGG 59.937 52.381 0.00 0.00 43.41 4.85
163 164 2.361789 GTTTATTTAGCGGTGGCAGGA 58.638 47.619 0.00 0.00 43.41 3.86
164 165 2.032680 TTATTTAGCGGTGGCAGGAC 57.967 50.000 0.00 0.00 43.41 3.85
165 166 0.179094 TATTTAGCGGTGGCAGGACG 60.179 55.000 0.00 0.00 43.41 4.79
166 167 2.180159 ATTTAGCGGTGGCAGGACGT 62.180 55.000 0.00 0.00 43.41 4.34
167 168 2.386064 TTTAGCGGTGGCAGGACGTT 62.386 55.000 0.00 4.77 43.41 3.99
168 169 3.583276 TAGCGGTGGCAGGACGTTG 62.583 63.158 0.00 0.00 43.41 4.10
170 171 2.340809 CGGTGGCAGGACGTTGTA 59.659 61.111 0.00 0.00 0.00 2.41
171 172 1.301087 CGGTGGCAGGACGTTGTAA 60.301 57.895 0.00 0.00 0.00 2.41
172 173 0.881159 CGGTGGCAGGACGTTGTAAA 60.881 55.000 0.00 0.00 0.00 2.01
173 174 1.530323 GGTGGCAGGACGTTGTAAAT 58.470 50.000 0.00 0.00 0.00 1.40
174 175 2.702261 GGTGGCAGGACGTTGTAAATA 58.298 47.619 0.00 0.00 0.00 1.40
175 176 2.417586 GGTGGCAGGACGTTGTAAATAC 59.582 50.000 0.00 0.00 0.00 1.89
176 177 2.093152 GTGGCAGGACGTTGTAAATACG 59.907 50.000 0.00 0.00 44.20 3.06
177 178 1.662122 GGCAGGACGTTGTAAATACGG 59.338 52.381 0.00 0.00 42.99 4.02
178 179 2.340337 GCAGGACGTTGTAAATACGGT 58.660 47.619 0.00 0.00 42.99 4.83
179 180 3.510719 GCAGGACGTTGTAAATACGGTA 58.489 45.455 0.00 0.00 42.99 4.02
180 181 3.925913 GCAGGACGTTGTAAATACGGTAA 59.074 43.478 0.00 0.00 42.99 2.85
181 182 4.388469 GCAGGACGTTGTAAATACGGTAAA 59.612 41.667 0.00 0.00 42.99 2.01
182 183 5.668621 GCAGGACGTTGTAAATACGGTAAAC 60.669 44.000 0.00 0.00 42.99 2.01
183 184 5.634859 CAGGACGTTGTAAATACGGTAAACT 59.365 40.000 0.00 0.00 42.99 2.66
184 185 6.146021 CAGGACGTTGTAAATACGGTAAACTT 59.854 38.462 0.00 0.00 42.99 2.66
185 186 6.366061 AGGACGTTGTAAATACGGTAAACTTC 59.634 38.462 0.00 0.00 42.99 3.01
186 187 6.145371 GGACGTTGTAAATACGGTAAACTTCA 59.855 38.462 0.00 0.00 42.99 3.02
187 188 7.109006 ACGTTGTAAATACGGTAAACTTCAG 57.891 36.000 0.00 0.00 42.99 3.02
188 189 6.011277 CGTTGTAAATACGGTAAACTTCAGC 58.989 40.000 0.00 0.00 35.47 4.26
189 190 6.128742 CGTTGTAAATACGGTAAACTTCAGCT 60.129 38.462 0.00 0.00 35.47 4.24
190 191 7.569957 CGTTGTAAATACGGTAAACTTCAGCTT 60.570 37.037 0.00 0.00 35.47 3.74
191 192 7.733402 TGTAAATACGGTAAACTTCAGCTTT 57.267 32.000 0.00 0.00 0.00 3.51
192 193 8.156994 TGTAAATACGGTAAACTTCAGCTTTT 57.843 30.769 0.00 0.00 0.00 2.27
193 194 8.284693 TGTAAATACGGTAAACTTCAGCTTTTC 58.715 33.333 0.00 0.00 0.00 2.29
194 195 5.874895 ATACGGTAAACTTCAGCTTTTCC 57.125 39.130 0.00 0.00 0.00 3.13
195 196 3.547746 ACGGTAAACTTCAGCTTTTCCA 58.452 40.909 0.00 0.00 0.00 3.53
196 197 3.949113 ACGGTAAACTTCAGCTTTTCCAA 59.051 39.130 0.00 0.00 0.00 3.53
197 198 4.583073 ACGGTAAACTTCAGCTTTTCCAAT 59.417 37.500 0.00 0.00 0.00 3.16
198 199 5.154222 CGGTAAACTTCAGCTTTTCCAATC 58.846 41.667 0.00 0.00 0.00 2.67
199 200 5.154222 GGTAAACTTCAGCTTTTCCAATCG 58.846 41.667 0.00 0.00 0.00 3.34
200 201 3.923017 AACTTCAGCTTTTCCAATCGG 57.077 42.857 0.00 0.00 0.00 4.18
201 202 2.863809 ACTTCAGCTTTTCCAATCGGT 58.136 42.857 0.00 0.00 0.00 4.69
202 203 2.554032 ACTTCAGCTTTTCCAATCGGTG 59.446 45.455 0.00 0.00 0.00 4.94
211 212 3.590824 CAATCGGTGGAGTTGGGC 58.409 61.111 0.00 0.00 0.00 5.36
212 213 2.046285 CAATCGGTGGAGTTGGGCC 61.046 63.158 0.00 0.00 0.00 5.80
213 214 2.231380 AATCGGTGGAGTTGGGCCT 61.231 57.895 4.53 0.00 0.00 5.19
214 215 1.789576 AATCGGTGGAGTTGGGCCTT 61.790 55.000 4.53 0.00 0.00 4.35
215 216 2.198304 ATCGGTGGAGTTGGGCCTTC 62.198 60.000 4.53 0.00 0.00 3.46
216 217 2.035783 GGTGGAGTTGGGCCTTCC 59.964 66.667 4.53 10.15 0.00 3.46
217 218 2.539081 GGTGGAGTTGGGCCTTCCT 61.539 63.158 18.61 6.83 36.20 3.36
218 219 1.002011 GTGGAGTTGGGCCTTCCTC 60.002 63.158 18.61 13.86 36.20 3.71
219 220 2.269241 GGAGTTGGGCCTTCCTCG 59.731 66.667 4.53 0.00 36.20 4.63
220 221 2.436824 GAGTTGGGCCTTCCTCGC 60.437 66.667 4.53 0.00 36.20 5.03
221 222 2.930562 AGTTGGGCCTTCCTCGCT 60.931 61.111 4.53 0.00 36.20 4.93
222 223 2.436824 GTTGGGCCTTCCTCGCTC 60.437 66.667 4.53 0.00 36.20 5.03
223 224 3.717294 TTGGGCCTTCCTCGCTCC 61.717 66.667 4.53 0.00 36.20 4.70
225 226 4.168291 GGGCCTTCCTCGCTCCAG 62.168 72.222 0.84 0.00 0.00 3.86
226 227 3.077556 GGCCTTCCTCGCTCCAGA 61.078 66.667 0.00 0.00 0.00 3.86
227 228 2.439104 GGCCTTCCTCGCTCCAGAT 61.439 63.158 0.00 0.00 0.00 2.90
228 229 1.524482 GCCTTCCTCGCTCCAGATT 59.476 57.895 0.00 0.00 0.00 2.40
229 230 0.107459 GCCTTCCTCGCTCCAGATTT 60.107 55.000 0.00 0.00 0.00 2.17
230 231 1.680249 GCCTTCCTCGCTCCAGATTTT 60.680 52.381 0.00 0.00 0.00 1.82
231 232 2.716217 CCTTCCTCGCTCCAGATTTTT 58.284 47.619 0.00 0.00 0.00 1.94
251 252 4.634184 TTTCAGTAGGATCGACTACAGC 57.366 45.455 13.78 0.00 44.49 4.40
252 253 3.562343 TCAGTAGGATCGACTACAGCT 57.438 47.619 13.78 0.00 44.49 4.24
253 254 3.887352 TCAGTAGGATCGACTACAGCTT 58.113 45.455 13.78 0.00 44.49 3.74
254 255 4.270834 TCAGTAGGATCGACTACAGCTTT 58.729 43.478 13.78 0.00 44.49 3.51
255 256 4.096532 TCAGTAGGATCGACTACAGCTTTG 59.903 45.833 13.78 5.07 44.49 2.77
256 257 2.301577 AGGATCGACTACAGCTTTGC 57.698 50.000 0.00 0.00 0.00 3.68
257 258 0.924090 GGATCGACTACAGCTTTGCG 59.076 55.000 0.00 0.00 0.00 4.85
258 259 1.469251 GGATCGACTACAGCTTTGCGA 60.469 52.381 0.00 0.00 0.00 5.10
259 260 2.259618 GATCGACTACAGCTTTGCGAA 58.740 47.619 0.00 0.00 0.00 4.70
260 261 1.698165 TCGACTACAGCTTTGCGAAG 58.302 50.000 9.54 9.54 35.92 3.79
283 284 3.600388 CAGCTTCTGGAGGTTATTTCGT 58.400 45.455 0.00 0.00 32.70 3.85
284 285 4.003648 CAGCTTCTGGAGGTTATTTCGTT 58.996 43.478 0.00 0.00 32.70 3.85
285 286 4.093556 CAGCTTCTGGAGGTTATTTCGTTC 59.906 45.833 0.00 0.00 32.70 3.95
286 287 3.062234 GCTTCTGGAGGTTATTTCGTTCG 59.938 47.826 0.00 0.00 0.00 3.95
287 288 3.241067 TCTGGAGGTTATTTCGTTCGG 57.759 47.619 0.00 0.00 0.00 4.30
288 289 1.664151 CTGGAGGTTATTTCGTTCGGC 59.336 52.381 0.00 0.00 0.00 5.54
289 290 1.276989 TGGAGGTTATTTCGTTCGGCT 59.723 47.619 0.00 0.00 0.00 5.52
290 291 1.931841 GGAGGTTATTTCGTTCGGCTC 59.068 52.381 0.00 0.00 0.00 4.70
291 292 2.418334 GGAGGTTATTTCGTTCGGCTCT 60.418 50.000 0.00 0.00 0.00 4.09
292 293 3.259902 GAGGTTATTTCGTTCGGCTCTT 58.740 45.455 0.00 0.00 0.00 2.85
293 294 4.427312 GAGGTTATTTCGTTCGGCTCTTA 58.573 43.478 0.00 0.00 0.00 2.10
294 295 5.019785 AGGTTATTTCGTTCGGCTCTTAT 57.980 39.130 0.00 0.00 0.00 1.73
295 296 5.048507 AGGTTATTTCGTTCGGCTCTTATC 58.951 41.667 0.00 0.00 0.00 1.75
296 297 5.048507 GGTTATTTCGTTCGGCTCTTATCT 58.951 41.667 0.00 0.00 0.00 1.98
297 298 5.050972 GGTTATTTCGTTCGGCTCTTATCTG 60.051 44.000 0.00 0.00 0.00 2.90
298 299 1.922570 TTCGTTCGGCTCTTATCTGC 58.077 50.000 0.00 0.00 0.00 4.26
299 300 1.103803 TCGTTCGGCTCTTATCTGCT 58.896 50.000 0.00 0.00 0.00 4.24
300 301 1.065701 TCGTTCGGCTCTTATCTGCTC 59.934 52.381 0.00 0.00 0.00 4.26
301 302 1.066303 CGTTCGGCTCTTATCTGCTCT 59.934 52.381 0.00 0.00 0.00 4.09
302 303 2.290916 CGTTCGGCTCTTATCTGCTCTA 59.709 50.000 0.00 0.00 0.00 2.43
303 304 3.608241 CGTTCGGCTCTTATCTGCTCTAG 60.608 52.174 0.00 0.00 0.00 2.43
304 305 2.509569 TCGGCTCTTATCTGCTCTAGG 58.490 52.381 0.00 0.00 0.00 3.02
305 306 2.106684 TCGGCTCTTATCTGCTCTAGGA 59.893 50.000 0.00 0.00 0.00 2.94
306 307 2.887783 CGGCTCTTATCTGCTCTAGGAA 59.112 50.000 0.00 0.00 0.00 3.36
307 308 3.319405 CGGCTCTTATCTGCTCTAGGAAA 59.681 47.826 0.00 0.00 0.00 3.13
308 309 4.021544 CGGCTCTTATCTGCTCTAGGAAAT 60.022 45.833 0.00 0.00 0.00 2.17
309 310 5.510520 CGGCTCTTATCTGCTCTAGGAAATT 60.511 44.000 0.00 0.00 0.00 1.82
310 311 5.700373 GGCTCTTATCTGCTCTAGGAAATTG 59.300 44.000 0.00 0.00 0.00 2.32
311 312 6.287525 GCTCTTATCTGCTCTAGGAAATTGT 58.712 40.000 0.00 0.00 0.00 2.71
312 313 6.202570 GCTCTTATCTGCTCTAGGAAATTGTG 59.797 42.308 0.00 0.00 0.00 3.33
313 314 7.423844 TCTTATCTGCTCTAGGAAATTGTGA 57.576 36.000 0.00 0.00 0.00 3.58
314 315 7.851228 TCTTATCTGCTCTAGGAAATTGTGAA 58.149 34.615 0.00 0.00 0.00 3.18
315 316 7.984050 TCTTATCTGCTCTAGGAAATTGTGAAG 59.016 37.037 0.00 0.00 0.00 3.02
316 317 5.489792 TCTGCTCTAGGAAATTGTGAAGT 57.510 39.130 0.00 0.00 0.00 3.01
317 318 5.240891 TCTGCTCTAGGAAATTGTGAAGTG 58.759 41.667 0.00 0.00 0.00 3.16
318 319 4.973168 TGCTCTAGGAAATTGTGAAGTGT 58.027 39.130 0.00 0.00 0.00 3.55
319 320 4.756642 TGCTCTAGGAAATTGTGAAGTGTG 59.243 41.667 0.00 0.00 0.00 3.82
320 321 4.154918 GCTCTAGGAAATTGTGAAGTGTGG 59.845 45.833 0.00 0.00 0.00 4.17
321 322 5.551233 CTCTAGGAAATTGTGAAGTGTGGA 58.449 41.667 0.00 0.00 0.00 4.02
322 323 5.551233 TCTAGGAAATTGTGAAGTGTGGAG 58.449 41.667 0.00 0.00 0.00 3.86
323 324 2.887152 AGGAAATTGTGAAGTGTGGAGC 59.113 45.455 0.00 0.00 0.00 4.70
324 325 2.350772 GGAAATTGTGAAGTGTGGAGCG 60.351 50.000 0.00 0.00 0.00 5.03
325 326 1.238439 AATTGTGAAGTGTGGAGCGG 58.762 50.000 0.00 0.00 0.00 5.52
326 327 0.606401 ATTGTGAAGTGTGGAGCGGG 60.606 55.000 0.00 0.00 0.00 6.13
327 328 1.691195 TTGTGAAGTGTGGAGCGGGA 61.691 55.000 0.00 0.00 0.00 5.14
328 329 1.374758 GTGAAGTGTGGAGCGGGAG 60.375 63.158 0.00 0.00 0.00 4.30
329 330 2.266055 GAAGTGTGGAGCGGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
330 331 2.203788 AAGTGTGGAGCGGGAGGA 60.204 61.111 0.00 0.00 0.00 3.71
331 332 2.232298 GAAGTGTGGAGCGGGAGGAG 62.232 65.000 0.00 0.00 0.00 3.69
332 333 2.680352 GTGTGGAGCGGGAGGAGA 60.680 66.667 0.00 0.00 0.00 3.71
333 334 2.060980 GTGTGGAGCGGGAGGAGAT 61.061 63.158 0.00 0.00 0.00 2.75
334 335 1.758514 TGTGGAGCGGGAGGAGATC 60.759 63.158 0.00 0.00 0.00 2.75
335 336 1.758514 GTGGAGCGGGAGGAGATCA 60.759 63.158 0.00 0.00 0.00 2.92
336 337 1.456518 TGGAGCGGGAGGAGATCAG 60.457 63.158 0.00 0.00 0.00 2.90
337 338 1.152652 GGAGCGGGAGGAGATCAGA 60.153 63.158 0.00 0.00 0.00 3.27
338 339 0.757188 GGAGCGGGAGGAGATCAGAA 60.757 60.000 0.00 0.00 0.00 3.02
339 340 0.387565 GAGCGGGAGGAGATCAGAAC 59.612 60.000 0.00 0.00 0.00 3.01
340 341 0.324738 AGCGGGAGGAGATCAGAACA 60.325 55.000 0.00 0.00 0.00 3.18
341 342 0.179097 GCGGGAGGAGATCAGAACAC 60.179 60.000 0.00 0.00 0.00 3.32
342 343 0.101399 CGGGAGGAGATCAGAACACG 59.899 60.000 0.00 0.00 0.00 4.49
343 344 0.179097 GGGAGGAGATCAGAACACGC 60.179 60.000 0.00 0.00 0.00 5.34
344 345 0.179097 GGAGGAGATCAGAACACGCC 60.179 60.000 0.00 0.00 0.00 5.68
348 349 0.532573 GAGATCAGAACACGCCCTGA 59.467 55.000 0.00 0.00 42.78 3.86
351 352 1.464997 GATCAGAACACGCCCTGAAAC 59.535 52.381 0.00 0.00 42.02 2.78
359 360 2.285977 CACGCCCTGAAACCCTATTAC 58.714 52.381 0.00 0.00 0.00 1.89
382 383 6.288294 ACTTTGGAATAAAACTCTTTTGCCC 58.712 36.000 0.00 0.00 34.19 5.36
383 384 4.882842 TGGAATAAAACTCTTTTGCCCC 57.117 40.909 0.00 0.00 34.19 5.80
384 385 3.580895 TGGAATAAAACTCTTTTGCCCCC 59.419 43.478 0.00 0.00 34.19 5.40
422 423 7.687941 AAGTCCGACATTAACATTTCTCAAT 57.312 32.000 0.40 0.00 0.00 2.57
482 485 3.334054 GCAGCTTCCCCACCTCCT 61.334 66.667 0.00 0.00 0.00 3.69
578 581 3.918253 ATGACGTGCCCCGCAACAT 62.918 57.895 0.00 0.00 41.47 2.71
586 592 2.406616 CCCCGCAACATTTCTCCGG 61.407 63.158 0.00 0.00 38.71 5.14
652 659 2.670148 GGCCGACCTGTCAGGGAAT 61.670 63.158 23.06 1.61 40.58 3.01
718 725 0.511221 GACGCGTGCAGCTTTTCTTA 59.489 50.000 20.70 0.00 45.59 2.10
719 726 0.941542 ACGCGTGCAGCTTTTCTTAA 59.058 45.000 12.93 0.00 45.59 1.85
721 728 1.686464 GCGTGCAGCTTTTCTTAACC 58.314 50.000 0.00 0.00 44.04 2.85
722 729 1.950472 CGTGCAGCTTTTCTTAACCG 58.050 50.000 0.00 0.00 0.00 4.44
723 730 1.399727 CGTGCAGCTTTTCTTAACCGG 60.400 52.381 0.00 0.00 0.00 5.28
724 731 0.596082 TGCAGCTTTTCTTAACCGGC 59.404 50.000 0.00 0.00 0.00 6.13
728 735 2.095212 CAGCTTTTCTTAACCGGCCTTC 60.095 50.000 0.00 0.00 0.00 3.46
729 736 1.135774 GCTTTTCTTAACCGGCCTTCG 60.136 52.381 0.00 0.00 38.88 3.79
767 774 0.608035 TCATTTGCCTCGACCCAACC 60.608 55.000 0.00 0.00 0.00 3.77
772 779 1.259142 TGCCTCGACCCAACCGAATA 61.259 55.000 0.00 0.00 35.48 1.75
864 872 4.404098 CTAAACAGGCCGCGGGGT 62.404 66.667 29.38 5.79 34.97 4.95
924 932 2.666596 GATGCTGACCGGGCCCTAAG 62.667 65.000 22.43 12.64 0.00 2.18
925 933 4.858680 GCTGACCGGGCCCTAAGC 62.859 72.222 22.43 18.64 42.60 3.09
1012 1020 1.166531 CGGCGAATCCCATTCCTTCC 61.167 60.000 0.00 0.00 35.89 3.46
1013 1021 0.183731 GGCGAATCCCATTCCTTCCT 59.816 55.000 0.00 0.00 35.89 3.36
1017 1025 2.224402 CGAATCCCATTCCTTCCTCTCC 60.224 54.545 0.00 0.00 35.89 3.71
1018 1026 1.826447 ATCCCATTCCTTCCTCTCCC 58.174 55.000 0.00 0.00 0.00 4.30
1019 1027 0.421495 TCCCATTCCTTCCTCTCCCA 59.579 55.000 0.00 0.00 0.00 4.37
1045 1053 0.620121 CAGCTCCTCCTCCTTCCCTT 60.620 60.000 0.00 0.00 0.00 3.95
1046 1054 0.326143 AGCTCCTCCTCCTTCCCTTC 60.326 60.000 0.00 0.00 0.00 3.46
1047 1055 1.341913 GCTCCTCCTCCTTCCCTTCC 61.342 65.000 0.00 0.00 0.00 3.46
1048 1056 0.341609 CTCCTCCTCCTTCCCTTCCT 59.658 60.000 0.00 0.00 0.00 3.36
1049 1057 0.340208 TCCTCCTCCTTCCCTTCCTC 59.660 60.000 0.00 0.00 0.00 3.71
1050 1058 1.045911 CCTCCTCCTTCCCTTCCTCG 61.046 65.000 0.00 0.00 0.00 4.63
1078 1086 1.076632 TCCTCTTCTCCGCTCTCCC 60.077 63.158 0.00 0.00 0.00 4.30
1102 1110 4.059459 GTGCGCTCGTGTTCACCG 62.059 66.667 9.73 0.00 0.00 4.94
1365 1373 2.431942 GTGACGTTCGCCATCGGT 60.432 61.111 0.00 0.00 36.13 4.69
1461 1469 2.517402 CTCCTCCCCTCGTCCTCG 60.517 72.222 0.00 0.00 38.55 4.63
1462 1470 4.816984 TCCTCCCCTCGTCCTCGC 62.817 72.222 0.00 0.00 36.96 5.03
1472 1480 3.519930 GTCCTCGCCGTCCTCCTC 61.520 72.222 0.00 0.00 0.00 3.71
1473 1481 4.816984 TCCTCGCCGTCCTCCTCC 62.817 72.222 0.00 0.00 0.00 4.30
1475 1483 3.068691 CTCGCCGTCCTCCTCCAA 61.069 66.667 0.00 0.00 0.00 3.53
1476 1484 3.068691 TCGCCGTCCTCCTCCAAG 61.069 66.667 0.00 0.00 0.00 3.61
1477 1485 4.148825 CGCCGTCCTCCTCCAAGG 62.149 72.222 0.00 0.00 37.81 3.61
1478 1486 2.683933 GCCGTCCTCCTCCAAGGA 60.684 66.667 0.00 0.00 43.43 3.36
1479 1487 2.066999 GCCGTCCTCCTCCAAGGAT 61.067 63.158 0.00 0.00 46.90 3.24
1573 1584 4.673298 TCGTGGCGTGGCGTTGAT 62.673 61.111 0.00 0.00 0.00 2.57
1722 1736 1.323412 ACCGGCACAAGCAACATTTA 58.677 45.000 0.00 0.00 44.61 1.40
1755 1770 4.663636 ATTGTTTCGTGTCGAGAATTCC 57.336 40.909 0.65 0.00 37.14 3.01
1784 1800 2.474712 GCAACGTGCTTCGCTACC 59.525 61.111 0.00 0.00 44.19 3.18
1818 1849 5.800941 CAGACCAGAAAACTGAGACGTATAC 59.199 44.000 0.00 0.00 34.07 1.47
1924 1964 2.280524 CCAACTCCACCGCGTGAA 60.281 61.111 4.92 0.00 35.23 3.18
1926 1966 1.885388 CAACTCCACCGCGTGAACA 60.885 57.895 4.92 0.00 35.23 3.18
1939 1979 2.029290 GCGTGAACATATCCTATCCGGT 60.029 50.000 0.00 0.00 0.00 5.28
1969 2010 8.658609 TCCGTTTAGTATAAAAAGGACAAATCG 58.341 33.333 1.71 0.00 40.58 3.34
1973 2014 4.643334 AGTATAAAAAGGACAAATCGGGCC 59.357 41.667 0.00 0.00 0.00 5.80
2037 2078 0.958822 GTTTTTGACCCATCTGCGGT 59.041 50.000 0.00 0.00 35.88 5.68
2071 2112 0.309612 CTTTTGGGGTGAAACGGACG 59.690 55.000 0.00 0.00 38.12 4.79
2081 2122 3.562779 AAACGGACGTCACGCGGAT 62.563 57.895 18.91 2.91 46.52 4.18
2187 2230 3.953775 CCGCACCCCACTCCACTT 61.954 66.667 0.00 0.00 0.00 3.16
2195 2238 1.355720 CCCCACTCCACTTTTCTCCAT 59.644 52.381 0.00 0.00 0.00 3.41
2204 2247 3.507622 CCACTTTTCTCCATTCTTCCCAC 59.492 47.826 0.00 0.00 0.00 4.61
2301 2351 4.770874 GCCGCCGAGCTACCCAAA 62.771 66.667 0.00 0.00 0.00 3.28
2371 2421 4.069232 CGGTCTTGAGCTCGCCCA 62.069 66.667 9.64 0.00 0.00 5.36
2499 2556 0.821517 TCGGCAGATACACGAATGGT 59.178 50.000 0.00 0.00 33.21 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.946768 CCAGGAACACGCAGAGAAAAA 59.053 47.619 0.00 0.00 0.00 1.94
7 8 1.593196 CCAGGAACACGCAGAGAAAA 58.407 50.000 0.00 0.00 0.00 2.29
8 9 0.250295 CCCAGGAACACGCAGAGAAA 60.250 55.000 0.00 0.00 0.00 2.52
9 10 1.371183 CCCAGGAACACGCAGAGAA 59.629 57.895 0.00 0.00 0.00 2.87
10 11 3.059982 CCCAGGAACACGCAGAGA 58.940 61.111 0.00 0.00 0.00 3.10
11 12 2.743928 GCCCAGGAACACGCAGAG 60.744 66.667 0.00 0.00 0.00 3.35
12 13 4.329545 GGCCCAGGAACACGCAGA 62.330 66.667 0.00 0.00 0.00 4.26
26 27 4.256180 CTATCTGGTGGGCCGGCC 62.256 72.222 38.57 38.57 40.99 6.13
27 28 4.937431 GCTATCTGGTGGGCCGGC 62.937 72.222 21.18 21.18 40.99 6.13
28 29 4.609018 CGCTATCTGGTGGGCCGG 62.609 72.222 0.00 0.00 42.59 6.13
29 30 3.536917 TCGCTATCTGGTGGGCCG 61.537 66.667 0.00 0.00 37.67 6.13
30 31 2.109181 GTCGCTATCTGGTGGGCC 59.891 66.667 0.00 0.00 0.00 5.80
31 32 1.227380 CTGTCGCTATCTGGTGGGC 60.227 63.158 0.00 0.00 0.00 5.36
32 33 0.179100 CACTGTCGCTATCTGGTGGG 60.179 60.000 0.00 0.00 0.00 4.61
33 34 0.179100 CCACTGTCGCTATCTGGTGG 60.179 60.000 0.00 0.00 38.26 4.61
34 35 0.179100 CCCACTGTCGCTATCTGGTG 60.179 60.000 0.00 0.00 0.00 4.17
35 36 1.330655 CCCCACTGTCGCTATCTGGT 61.331 60.000 0.00 0.00 0.00 4.00
36 37 1.443407 CCCCACTGTCGCTATCTGG 59.557 63.158 0.00 0.00 0.00 3.86
37 38 1.443407 CCCCCACTGTCGCTATCTG 59.557 63.158 0.00 0.00 0.00 2.90
38 39 2.435693 GCCCCCACTGTCGCTATCT 61.436 63.158 0.00 0.00 0.00 1.98
39 40 2.109181 GCCCCCACTGTCGCTATC 59.891 66.667 0.00 0.00 0.00 2.08
40 41 3.480133 GGCCCCCACTGTCGCTAT 61.480 66.667 0.00 0.00 0.00 2.97
44 45 3.953775 AACTGGCCCCCACTGTCG 61.954 66.667 0.00 0.00 0.00 4.35
45 46 2.282462 CAACTGGCCCCCACTGTC 60.282 66.667 0.00 0.00 0.00 3.51
46 47 4.603535 GCAACTGGCCCCCACTGT 62.604 66.667 0.00 0.00 36.11 3.55
63 64 1.772063 GCATTAAGCGCCGGTACAGG 61.772 60.000 7.81 7.81 0.00 4.00
64 65 1.641677 GCATTAAGCGCCGGTACAG 59.358 57.895 2.29 0.00 0.00 2.74
65 66 3.802507 GCATTAAGCGCCGGTACA 58.197 55.556 2.29 0.00 0.00 2.90
74 75 1.725164 GTCCTATACGGCGCATTAAGC 59.275 52.381 10.83 0.00 40.87 3.09
75 76 2.029290 AGGTCCTATACGGCGCATTAAG 60.029 50.000 10.83 0.00 0.00 1.85
76 77 1.965643 AGGTCCTATACGGCGCATTAA 59.034 47.619 10.83 0.00 0.00 1.40
77 78 1.542915 GAGGTCCTATACGGCGCATTA 59.457 52.381 10.83 0.00 0.00 1.90
78 79 0.317479 GAGGTCCTATACGGCGCATT 59.683 55.000 10.83 0.00 0.00 3.56
79 80 1.533469 GGAGGTCCTATACGGCGCAT 61.533 60.000 10.83 0.92 0.00 4.73
80 81 2.198287 GGAGGTCCTATACGGCGCA 61.198 63.158 10.83 0.00 0.00 6.09
81 82 2.649614 GGAGGTCCTATACGGCGC 59.350 66.667 6.90 0.00 0.00 6.53
82 83 2.273912 GGGGAGGTCCTATACGGCG 61.274 68.421 4.80 4.80 35.95 6.46
83 84 1.912264 GGGGGAGGTCCTATACGGC 60.912 68.421 0.00 0.00 35.95 5.68
84 85 0.542232 CAGGGGGAGGTCCTATACGG 60.542 65.000 0.00 0.00 35.95 4.02
85 86 0.187851 ACAGGGGGAGGTCCTATACG 59.812 60.000 0.00 0.00 35.95 3.06
86 87 2.822388 GCTACAGGGGGAGGTCCTATAC 60.822 59.091 0.00 0.00 35.95 1.47
87 88 1.432024 GCTACAGGGGGAGGTCCTATA 59.568 57.143 0.00 0.00 35.95 1.31
88 89 0.191314 GCTACAGGGGGAGGTCCTAT 59.809 60.000 0.00 0.00 35.95 2.57
89 90 1.624753 GCTACAGGGGGAGGTCCTA 59.375 63.158 0.00 0.00 35.95 2.94
90 91 2.369001 GCTACAGGGGGAGGTCCT 59.631 66.667 0.00 0.00 35.95 3.85
91 92 2.948801 ATCGCTACAGGGGGAGGTCC 62.949 65.000 0.00 0.00 0.00 4.46
92 93 0.178970 TATCGCTACAGGGGGAGGTC 60.179 60.000 0.00 0.00 0.00 3.85
93 94 0.178958 CTATCGCTACAGGGGGAGGT 60.179 60.000 0.00 0.00 0.00 3.85
94 95 0.900647 CCTATCGCTACAGGGGGAGG 60.901 65.000 0.00 0.00 0.00 4.30
95 96 0.178958 ACCTATCGCTACAGGGGGAG 60.179 60.000 0.00 0.00 36.15 4.30
96 97 0.263765 AACCTATCGCTACAGGGGGA 59.736 55.000 0.00 0.00 36.15 4.81
97 98 0.680061 GAACCTATCGCTACAGGGGG 59.320 60.000 0.00 0.00 36.15 5.40
98 99 1.705873 AGAACCTATCGCTACAGGGG 58.294 55.000 0.00 0.00 36.15 4.79
99 100 5.470047 AATTAGAACCTATCGCTACAGGG 57.530 43.478 0.00 0.00 36.15 4.45
100 101 5.927115 GGAAATTAGAACCTATCGCTACAGG 59.073 44.000 0.00 0.00 37.97 4.00
101 102 5.629849 CGGAAATTAGAACCTATCGCTACAG 59.370 44.000 0.00 0.00 0.00 2.74
102 103 5.300034 TCGGAAATTAGAACCTATCGCTACA 59.700 40.000 0.00 0.00 0.00 2.74
103 104 5.766222 TCGGAAATTAGAACCTATCGCTAC 58.234 41.667 0.00 0.00 0.00 3.58
104 105 5.564259 GCTCGGAAATTAGAACCTATCGCTA 60.564 44.000 0.00 0.00 0.00 4.26
105 106 4.796618 GCTCGGAAATTAGAACCTATCGCT 60.797 45.833 0.00 0.00 0.00 4.93
106 107 3.429207 GCTCGGAAATTAGAACCTATCGC 59.571 47.826 0.00 0.00 0.00 4.58
107 108 3.669122 CGCTCGGAAATTAGAACCTATCG 59.331 47.826 0.00 0.00 0.00 2.92
108 109 4.618965 ACGCTCGGAAATTAGAACCTATC 58.381 43.478 0.00 0.00 0.00 2.08
109 110 4.667519 ACGCTCGGAAATTAGAACCTAT 57.332 40.909 0.00 0.00 0.00 2.57
110 111 4.641989 AGTACGCTCGGAAATTAGAACCTA 59.358 41.667 0.00 0.00 0.00 3.08
111 112 3.446516 AGTACGCTCGGAAATTAGAACCT 59.553 43.478 0.00 0.00 0.00 3.50
112 113 3.778618 AGTACGCTCGGAAATTAGAACC 58.221 45.455 0.00 0.00 0.00 3.62
113 114 4.418392 TGAGTACGCTCGGAAATTAGAAC 58.582 43.478 0.00 0.00 44.48 3.01
114 115 4.707030 TGAGTACGCTCGGAAATTAGAA 57.293 40.909 0.00 0.00 44.48 2.10
124 125 1.674611 CGGTTTGCTGAGTACGCTCG 61.675 60.000 0.00 0.00 44.48 5.03
125 126 0.666577 ACGGTTTGCTGAGTACGCTC 60.667 55.000 0.00 0.00 41.97 5.03
126 127 0.249741 AACGGTTTGCTGAGTACGCT 60.250 50.000 0.00 0.00 0.00 5.07
127 128 0.584876 AAACGGTTTGCTGAGTACGC 59.415 50.000 5.12 0.00 0.00 4.42
128 129 4.657075 AATAAACGGTTTGCTGAGTACG 57.343 40.909 16.05 0.00 0.00 3.67
129 130 6.019762 GCTAAATAAACGGTTTGCTGAGTAC 58.980 40.000 16.05 0.00 0.00 2.73
130 131 5.163933 CGCTAAATAAACGGTTTGCTGAGTA 60.164 40.000 16.05 0.00 0.00 2.59
131 132 4.378046 CGCTAAATAAACGGTTTGCTGAGT 60.378 41.667 16.05 0.00 0.00 3.41
132 133 4.088648 CGCTAAATAAACGGTTTGCTGAG 58.911 43.478 16.05 9.10 0.00 3.35
133 134 3.120130 CCGCTAAATAAACGGTTTGCTGA 60.120 43.478 16.05 0.00 42.01 4.26
134 135 3.168193 CCGCTAAATAAACGGTTTGCTG 58.832 45.455 16.05 3.55 42.01 4.41
135 136 3.481112 CCGCTAAATAAACGGTTTGCT 57.519 42.857 16.05 0.86 42.01 3.91
142 143 1.063469 CCTGCCACCGCTAAATAAACG 59.937 52.381 0.00 0.00 35.36 3.60
143 144 2.096980 GTCCTGCCACCGCTAAATAAAC 59.903 50.000 0.00 0.00 35.36 2.01
144 145 2.361789 GTCCTGCCACCGCTAAATAAA 58.638 47.619 0.00 0.00 35.36 1.40
145 146 1.741055 CGTCCTGCCACCGCTAAATAA 60.741 52.381 0.00 0.00 35.36 1.40
146 147 0.179094 CGTCCTGCCACCGCTAAATA 60.179 55.000 0.00 0.00 35.36 1.40
147 148 1.449601 CGTCCTGCCACCGCTAAAT 60.450 57.895 0.00 0.00 35.36 1.40
148 149 2.047655 CGTCCTGCCACCGCTAAA 60.048 61.111 0.00 0.00 35.36 1.85
149 150 2.874664 AACGTCCTGCCACCGCTAA 61.875 57.895 0.00 0.00 35.36 3.09
150 151 3.307906 AACGTCCTGCCACCGCTA 61.308 61.111 0.00 0.00 35.36 4.26
151 152 4.988598 CAACGTCCTGCCACCGCT 62.989 66.667 0.00 0.00 35.36 5.52
152 153 3.869473 TACAACGTCCTGCCACCGC 62.869 63.158 0.00 0.00 0.00 5.68
153 154 0.881159 TTTACAACGTCCTGCCACCG 60.881 55.000 0.00 0.00 0.00 4.94
154 155 1.530323 ATTTACAACGTCCTGCCACC 58.470 50.000 0.00 0.00 0.00 4.61
155 156 2.093152 CGTATTTACAACGTCCTGCCAC 59.907 50.000 0.00 0.00 35.66 5.01
156 157 2.339418 CGTATTTACAACGTCCTGCCA 58.661 47.619 0.00 0.00 35.66 4.92
157 158 1.662122 CCGTATTTACAACGTCCTGCC 59.338 52.381 0.00 0.00 38.67 4.85
158 159 2.340337 ACCGTATTTACAACGTCCTGC 58.660 47.619 0.00 0.00 38.67 4.85
159 160 5.634859 AGTTTACCGTATTTACAACGTCCTG 59.365 40.000 0.00 0.00 38.67 3.86
160 161 5.783111 AGTTTACCGTATTTACAACGTCCT 58.217 37.500 0.00 0.00 38.67 3.85
161 162 6.145371 TGAAGTTTACCGTATTTACAACGTCC 59.855 38.462 0.00 0.00 38.67 4.79
162 163 7.104326 TGAAGTTTACCGTATTTACAACGTC 57.896 36.000 0.00 0.00 38.67 4.34
163 164 6.346838 GCTGAAGTTTACCGTATTTACAACGT 60.347 38.462 0.00 0.00 38.67 3.99
164 165 6.011277 GCTGAAGTTTACCGTATTTACAACG 58.989 40.000 0.00 0.00 40.01 4.10
165 166 7.125536 AGCTGAAGTTTACCGTATTTACAAC 57.874 36.000 0.00 0.00 0.00 3.32
166 167 7.733402 AAGCTGAAGTTTACCGTATTTACAA 57.267 32.000 0.00 0.00 0.00 2.41
167 168 7.733402 AAAGCTGAAGTTTACCGTATTTACA 57.267 32.000 0.00 0.00 0.00 2.41
168 169 7.747799 GGAAAAGCTGAAGTTTACCGTATTTAC 59.252 37.037 0.00 0.00 0.00 2.01
169 170 7.444792 TGGAAAAGCTGAAGTTTACCGTATTTA 59.555 33.333 0.00 0.00 0.00 1.40
170 171 6.263617 TGGAAAAGCTGAAGTTTACCGTATTT 59.736 34.615 0.00 0.00 0.00 1.40
171 172 5.766174 TGGAAAAGCTGAAGTTTACCGTATT 59.234 36.000 0.00 0.00 0.00 1.89
172 173 5.310451 TGGAAAAGCTGAAGTTTACCGTAT 58.690 37.500 0.00 0.00 0.00 3.06
173 174 4.706035 TGGAAAAGCTGAAGTTTACCGTA 58.294 39.130 0.00 0.00 0.00 4.02
174 175 3.547746 TGGAAAAGCTGAAGTTTACCGT 58.452 40.909 0.00 0.00 0.00 4.83
175 176 4.561735 TTGGAAAAGCTGAAGTTTACCG 57.438 40.909 0.00 0.00 0.00 4.02
176 177 5.154222 CGATTGGAAAAGCTGAAGTTTACC 58.846 41.667 0.00 0.00 0.00 2.85
177 178 5.154222 CCGATTGGAAAAGCTGAAGTTTAC 58.846 41.667 0.00 0.00 37.49 2.01
178 179 4.825085 ACCGATTGGAAAAGCTGAAGTTTA 59.175 37.500 5.81 0.00 39.21 2.01
179 180 3.636764 ACCGATTGGAAAAGCTGAAGTTT 59.363 39.130 5.81 0.00 39.21 2.66
180 181 3.004734 CACCGATTGGAAAAGCTGAAGTT 59.995 43.478 5.81 0.00 39.21 2.66
181 182 2.554032 CACCGATTGGAAAAGCTGAAGT 59.446 45.455 5.81 0.00 39.21 3.01
182 183 3.207474 CACCGATTGGAAAAGCTGAAG 57.793 47.619 5.81 0.00 39.21 3.02
194 195 2.046285 GGCCCAACTCCACCGATTG 61.046 63.158 0.00 0.00 0.00 2.67
195 196 1.789576 AAGGCCCAACTCCACCGATT 61.790 55.000 0.00 0.00 0.00 3.34
196 197 2.198304 GAAGGCCCAACTCCACCGAT 62.198 60.000 0.00 0.00 0.00 4.18
197 198 2.852075 AAGGCCCAACTCCACCGA 60.852 61.111 0.00 0.00 0.00 4.69
198 199 2.359975 GAAGGCCCAACTCCACCG 60.360 66.667 0.00 0.00 0.00 4.94
199 200 2.035783 GGAAGGCCCAACTCCACC 59.964 66.667 0.00 0.00 34.14 4.61
200 201 1.002011 GAGGAAGGCCCAACTCCAC 60.002 63.158 0.00 0.00 37.41 4.02
201 202 2.592993 CGAGGAAGGCCCAACTCCA 61.593 63.158 0.00 0.00 37.41 3.86
202 203 2.269241 CGAGGAAGGCCCAACTCC 59.731 66.667 0.00 0.04 37.41 3.85
203 204 2.436824 GCGAGGAAGGCCCAACTC 60.437 66.667 0.00 3.31 37.41 3.01
204 205 2.930562 AGCGAGGAAGGCCCAACT 60.931 61.111 0.00 0.00 37.41 3.16
205 206 2.436824 GAGCGAGGAAGGCCCAAC 60.437 66.667 0.00 0.00 37.41 3.77
206 207 3.717294 GGAGCGAGGAAGGCCCAA 61.717 66.667 0.00 0.00 37.41 4.12
208 209 4.168291 CTGGAGCGAGGAAGGCCC 62.168 72.222 0.00 0.00 33.31 5.80
209 210 1.977293 AATCTGGAGCGAGGAAGGCC 61.977 60.000 0.00 0.00 0.00 5.19
210 211 0.107459 AAATCTGGAGCGAGGAAGGC 60.107 55.000 0.00 0.00 0.00 4.35
211 212 2.409948 AAAATCTGGAGCGAGGAAGG 57.590 50.000 0.00 0.00 0.00 3.46
228 229 5.185249 AGCTGTAGTCGATCCTACTGAAAAA 59.815 40.000 18.34 0.00 38.46 1.94
229 230 4.705507 AGCTGTAGTCGATCCTACTGAAAA 59.294 41.667 18.34 0.00 38.46 2.29
230 231 4.270834 AGCTGTAGTCGATCCTACTGAAA 58.729 43.478 18.34 0.00 38.46 2.69
231 232 3.887352 AGCTGTAGTCGATCCTACTGAA 58.113 45.455 18.34 0.09 38.46 3.02
232 233 3.562343 AGCTGTAGTCGATCCTACTGA 57.438 47.619 18.34 0.65 38.46 3.41
233 234 4.355437 CAAAGCTGTAGTCGATCCTACTG 58.645 47.826 12.76 12.78 38.49 2.74
234 235 3.181485 GCAAAGCTGTAGTCGATCCTACT 60.181 47.826 12.76 5.84 38.49 2.57
235 236 3.117046 GCAAAGCTGTAGTCGATCCTAC 58.883 50.000 6.31 6.31 38.23 3.18
236 237 2.223502 CGCAAAGCTGTAGTCGATCCTA 60.224 50.000 0.00 0.00 0.00 2.94
237 238 1.469940 CGCAAAGCTGTAGTCGATCCT 60.470 52.381 0.00 0.00 0.00 3.24
238 239 0.924090 CGCAAAGCTGTAGTCGATCC 59.076 55.000 0.00 0.00 0.00 3.36
239 240 1.909376 TCGCAAAGCTGTAGTCGATC 58.091 50.000 0.00 0.00 0.00 3.69
240 241 2.263077 CTTCGCAAAGCTGTAGTCGAT 58.737 47.619 0.00 0.00 0.00 3.59
241 242 1.698165 CTTCGCAAAGCTGTAGTCGA 58.302 50.000 0.00 0.00 0.00 4.20
251 252 4.855596 GAAGCTGGCTTCGCAAAG 57.144 55.556 17.68 0.00 42.23 2.77
262 263 3.600388 ACGAAATAACCTCCAGAAGCTG 58.400 45.455 0.00 0.00 0.00 4.24
263 264 3.983044 ACGAAATAACCTCCAGAAGCT 57.017 42.857 0.00 0.00 0.00 3.74
264 265 3.062234 CGAACGAAATAACCTCCAGAAGC 59.938 47.826 0.00 0.00 0.00 3.86
265 266 3.617263 CCGAACGAAATAACCTCCAGAAG 59.383 47.826 0.00 0.00 0.00 2.85
266 267 3.592059 CCGAACGAAATAACCTCCAGAA 58.408 45.455 0.00 0.00 0.00 3.02
267 268 2.675889 GCCGAACGAAATAACCTCCAGA 60.676 50.000 0.00 0.00 0.00 3.86
268 269 1.664151 GCCGAACGAAATAACCTCCAG 59.336 52.381 0.00 0.00 0.00 3.86
269 270 1.276989 AGCCGAACGAAATAACCTCCA 59.723 47.619 0.00 0.00 0.00 3.86
270 271 1.931841 GAGCCGAACGAAATAACCTCC 59.068 52.381 0.00 0.00 0.00 4.30
271 272 2.889852 AGAGCCGAACGAAATAACCTC 58.110 47.619 0.00 0.00 0.00 3.85
272 273 3.329929 AAGAGCCGAACGAAATAACCT 57.670 42.857 0.00 0.00 0.00 3.50
273 274 5.048507 AGATAAGAGCCGAACGAAATAACC 58.951 41.667 0.00 0.00 0.00 2.85
274 275 5.556570 GCAGATAAGAGCCGAACGAAATAAC 60.557 44.000 0.00 0.00 0.00 1.89
275 276 4.506654 GCAGATAAGAGCCGAACGAAATAA 59.493 41.667 0.00 0.00 0.00 1.40
276 277 4.049186 GCAGATAAGAGCCGAACGAAATA 58.951 43.478 0.00 0.00 0.00 1.40
277 278 2.866762 GCAGATAAGAGCCGAACGAAAT 59.133 45.455 0.00 0.00 0.00 2.17
278 279 2.094182 AGCAGATAAGAGCCGAACGAAA 60.094 45.455 0.00 0.00 0.00 3.46
279 280 1.476891 AGCAGATAAGAGCCGAACGAA 59.523 47.619 0.00 0.00 0.00 3.85
280 281 1.065701 GAGCAGATAAGAGCCGAACGA 59.934 52.381 0.00 0.00 0.00 3.85
281 282 1.066303 AGAGCAGATAAGAGCCGAACG 59.934 52.381 0.00 0.00 0.00 3.95
282 283 2.880963 AGAGCAGATAAGAGCCGAAC 57.119 50.000 0.00 0.00 0.00 3.95
283 284 2.887783 CCTAGAGCAGATAAGAGCCGAA 59.112 50.000 0.00 0.00 0.00 4.30
284 285 2.106684 TCCTAGAGCAGATAAGAGCCGA 59.893 50.000 0.00 0.00 0.00 5.54
285 286 2.509569 TCCTAGAGCAGATAAGAGCCG 58.490 52.381 0.00 0.00 0.00 5.52
286 287 4.946478 TTTCCTAGAGCAGATAAGAGCC 57.054 45.455 0.00 0.00 0.00 4.70
287 288 6.202570 CACAATTTCCTAGAGCAGATAAGAGC 59.797 42.308 0.00 0.00 0.00 4.09
288 289 7.495901 TCACAATTTCCTAGAGCAGATAAGAG 58.504 38.462 0.00 0.00 0.00 2.85
289 290 7.423844 TCACAATTTCCTAGAGCAGATAAGA 57.576 36.000 0.00 0.00 0.00 2.10
290 291 7.768120 ACTTCACAATTTCCTAGAGCAGATAAG 59.232 37.037 0.00 0.00 0.00 1.73
291 292 7.550551 CACTTCACAATTTCCTAGAGCAGATAA 59.449 37.037 0.00 0.00 0.00 1.75
292 293 7.044181 CACTTCACAATTTCCTAGAGCAGATA 58.956 38.462 0.00 0.00 0.00 1.98
293 294 5.879223 CACTTCACAATTTCCTAGAGCAGAT 59.121 40.000 0.00 0.00 0.00 2.90
294 295 5.221722 ACACTTCACAATTTCCTAGAGCAGA 60.222 40.000 0.00 0.00 0.00 4.26
295 296 4.999950 ACACTTCACAATTTCCTAGAGCAG 59.000 41.667 0.00 0.00 0.00 4.24
296 297 4.756642 CACACTTCACAATTTCCTAGAGCA 59.243 41.667 0.00 0.00 0.00 4.26
297 298 4.154918 CCACACTTCACAATTTCCTAGAGC 59.845 45.833 0.00 0.00 0.00 4.09
298 299 5.551233 TCCACACTTCACAATTTCCTAGAG 58.449 41.667 0.00 0.00 0.00 2.43
299 300 5.551233 CTCCACACTTCACAATTTCCTAGA 58.449 41.667 0.00 0.00 0.00 2.43
300 301 4.154918 GCTCCACACTTCACAATTTCCTAG 59.845 45.833 0.00 0.00 0.00 3.02
301 302 4.072131 GCTCCACACTTCACAATTTCCTA 58.928 43.478 0.00 0.00 0.00 2.94
302 303 2.887152 GCTCCACACTTCACAATTTCCT 59.113 45.455 0.00 0.00 0.00 3.36
303 304 2.350772 CGCTCCACACTTCACAATTTCC 60.351 50.000 0.00 0.00 0.00 3.13
304 305 2.350772 CCGCTCCACACTTCACAATTTC 60.351 50.000 0.00 0.00 0.00 2.17
305 306 1.608590 CCGCTCCACACTTCACAATTT 59.391 47.619 0.00 0.00 0.00 1.82
306 307 1.238439 CCGCTCCACACTTCACAATT 58.762 50.000 0.00 0.00 0.00 2.32
307 308 0.606401 CCCGCTCCACACTTCACAAT 60.606 55.000 0.00 0.00 0.00 2.71
308 309 1.227823 CCCGCTCCACACTTCACAA 60.228 57.895 0.00 0.00 0.00 3.33
309 310 2.099652 CTCCCGCTCCACACTTCACA 62.100 60.000 0.00 0.00 0.00 3.58
310 311 1.374758 CTCCCGCTCCACACTTCAC 60.375 63.158 0.00 0.00 0.00 3.18
311 312 2.583441 CCTCCCGCTCCACACTTCA 61.583 63.158 0.00 0.00 0.00 3.02
312 313 2.232298 CTCCTCCCGCTCCACACTTC 62.232 65.000 0.00 0.00 0.00 3.01
313 314 2.203788 TCCTCCCGCTCCACACTT 60.204 61.111 0.00 0.00 0.00 3.16
314 315 2.522198 ATCTCCTCCCGCTCCACACT 62.522 60.000 0.00 0.00 0.00 3.55
315 316 2.022240 GATCTCCTCCCGCTCCACAC 62.022 65.000 0.00 0.00 0.00 3.82
316 317 1.758514 GATCTCCTCCCGCTCCACA 60.759 63.158 0.00 0.00 0.00 4.17
317 318 1.743321 CTGATCTCCTCCCGCTCCAC 61.743 65.000 0.00 0.00 0.00 4.02
318 319 1.456518 CTGATCTCCTCCCGCTCCA 60.457 63.158 0.00 0.00 0.00 3.86
319 320 0.757188 TTCTGATCTCCTCCCGCTCC 60.757 60.000 0.00 0.00 0.00 4.70
320 321 0.387565 GTTCTGATCTCCTCCCGCTC 59.612 60.000 0.00 0.00 0.00 5.03
321 322 0.324738 TGTTCTGATCTCCTCCCGCT 60.325 55.000 0.00 0.00 0.00 5.52
322 323 0.179097 GTGTTCTGATCTCCTCCCGC 60.179 60.000 0.00 0.00 0.00 6.13
323 324 0.101399 CGTGTTCTGATCTCCTCCCG 59.899 60.000 0.00 0.00 0.00 5.14
324 325 0.179097 GCGTGTTCTGATCTCCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
325 326 0.179097 GGCGTGTTCTGATCTCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
326 327 0.179097 GGGCGTGTTCTGATCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
327 328 0.616111 AGGGCGTGTTCTGATCTCCT 60.616 55.000 0.00 0.00 0.00 3.69
328 329 0.460987 CAGGGCGTGTTCTGATCTCC 60.461 60.000 0.00 0.00 33.11 3.71
329 330 0.532573 TCAGGGCGTGTTCTGATCTC 59.467 55.000 7.12 0.00 35.37 2.75
330 331 0.976641 TTCAGGGCGTGTTCTGATCT 59.023 50.000 7.12 0.00 39.42 2.75
331 332 1.464997 GTTTCAGGGCGTGTTCTGATC 59.535 52.381 7.12 0.00 39.42 2.92
332 333 1.523758 GTTTCAGGGCGTGTTCTGAT 58.476 50.000 7.12 0.00 39.42 2.90
333 334 0.534203 GGTTTCAGGGCGTGTTCTGA 60.534 55.000 7.12 0.00 38.14 3.27
334 335 1.515521 GGGTTTCAGGGCGTGTTCTG 61.516 60.000 7.12 0.00 0.00 3.02
335 336 1.228154 GGGTTTCAGGGCGTGTTCT 60.228 57.895 7.12 0.00 0.00 3.01
336 337 0.035739 TAGGGTTTCAGGGCGTGTTC 59.964 55.000 7.12 0.00 0.00 3.18
337 338 0.696501 ATAGGGTTTCAGGGCGTGTT 59.303 50.000 7.12 0.00 0.00 3.32
338 339 0.696501 AATAGGGTTTCAGGGCGTGT 59.303 50.000 7.12 0.00 0.00 4.49
339 340 2.093128 AGTAATAGGGTTTCAGGGCGTG 60.093 50.000 0.00 0.00 0.00 5.34
340 341 2.193993 AGTAATAGGGTTTCAGGGCGT 58.806 47.619 0.00 0.00 0.00 5.68
341 342 3.277142 AAGTAATAGGGTTTCAGGGCG 57.723 47.619 0.00 0.00 0.00 6.13
342 343 3.699538 CCAAAGTAATAGGGTTTCAGGGC 59.300 47.826 0.00 0.00 0.00 5.19
343 344 5.187621 TCCAAAGTAATAGGGTTTCAGGG 57.812 43.478 0.00 0.00 0.00 4.45
344 345 8.817092 TTATTCCAAAGTAATAGGGTTTCAGG 57.183 34.615 0.00 0.00 0.00 3.86
359 360 5.700832 GGGGCAAAAGAGTTTTATTCCAAAG 59.299 40.000 0.00 0.00 0.00 2.77
388 389 6.490721 TGTTAATGTCGGACTTTGGGTATTTT 59.509 34.615 16.82 0.00 0.00 1.82
390 391 5.562635 TGTTAATGTCGGACTTTGGGTATT 58.437 37.500 16.82 6.27 0.00 1.89
405 406 9.793252 GTGCATCTTATTGAGAAATGTTAATGT 57.207 29.630 0.00 0.00 38.06 2.71
422 423 3.119531 CCAAATCTTTGCGGTGCATCTTA 60.120 43.478 0.00 0.00 38.76 2.10
604 610 2.626780 GGGGGAAGCGTTTCTGTGC 61.627 63.158 11.94 0.00 33.68 4.57
652 659 1.004862 TGGTTGATTGGGCGTTATCCA 59.995 47.619 0.00 0.00 0.00 3.41
724 731 1.069258 GTTCCGGATAGGGCGAAGG 59.931 63.158 4.15 0.00 41.52 3.46
728 735 4.963428 GGCGTTCCGGATAGGGCG 62.963 72.222 4.15 6.75 41.52 6.13
729 736 4.620937 GGGCGTTCCGGATAGGGC 62.621 72.222 4.15 13.90 41.52 5.19
752 759 2.119484 ATTCGGTTGGGTCGAGGCAA 62.119 55.000 0.00 0.00 37.93 4.52
753 760 1.259142 TATTCGGTTGGGTCGAGGCA 61.259 55.000 0.00 0.00 37.93 4.75
767 774 2.792749 GAATGCCGTTTTGGGTATTCG 58.207 47.619 6.65 0.00 45.13 3.34
864 872 0.178533 ACGAACCAACAAACTCCGGA 59.821 50.000 2.93 2.93 0.00 5.14
868 876 3.547413 GCACCTAACGAACCAACAAACTC 60.547 47.826 0.00 0.00 0.00 3.01
921 929 1.530891 CTCCTCCGATCCCCGCTTA 60.531 63.158 0.00 0.00 36.84 3.09
1012 1020 1.662438 GAGCTGGAGACGTGGGAGAG 61.662 65.000 0.00 0.00 0.00 3.20
1013 1021 1.679305 GAGCTGGAGACGTGGGAGA 60.679 63.158 0.00 0.00 0.00 3.71
1017 1025 2.716017 GGAGGAGCTGGAGACGTGG 61.716 68.421 0.00 0.00 0.00 4.94
1018 1026 1.662438 GAGGAGGAGCTGGAGACGTG 61.662 65.000 0.00 0.00 0.00 4.49
1019 1027 1.379309 GAGGAGGAGCTGGAGACGT 60.379 63.158 0.00 0.00 0.00 4.34
1066 1074 3.024356 AGGAGGGGAGAGCGGAGA 61.024 66.667 0.00 0.00 0.00 3.71
1070 1078 3.522731 CACGAGGAGGGGAGAGCG 61.523 72.222 0.00 0.00 0.00 5.03
1072 1080 3.522731 CGCACGAGGAGGGGAGAG 61.523 72.222 0.00 0.00 0.00 3.20
1162 1170 3.250323 CATCAGCCGCGAGTCGTG 61.250 66.667 19.03 19.03 37.10 4.35
1365 1373 1.299648 CCACGGCATGAGGAGGAAA 59.700 57.895 0.00 0.00 0.00 3.13
1461 1469 2.683933 TCCTTGGAGGAGGACGGC 60.684 66.667 0.00 0.00 40.06 5.68
1471 1479 0.744874 CGTCGCTCCTTATCCTTGGA 59.255 55.000 0.00 0.00 0.00 3.53
1472 1480 0.249489 CCGTCGCTCCTTATCCTTGG 60.249 60.000 0.00 0.00 0.00 3.61
1473 1481 0.876342 GCCGTCGCTCCTTATCCTTG 60.876 60.000 0.00 0.00 0.00 3.61
1474 1482 1.043673 AGCCGTCGCTCCTTATCCTT 61.044 55.000 0.00 0.00 43.95 3.36
1475 1483 1.455959 AGCCGTCGCTCCTTATCCT 60.456 57.895 0.00 0.00 43.95 3.24
1476 1484 1.300233 CAGCCGTCGCTCCTTATCC 60.300 63.158 0.00 0.00 43.95 2.59
1477 1485 1.951631 GCAGCCGTCGCTCCTTATC 60.952 63.158 0.00 0.00 43.95 1.75
1478 1486 2.107141 GCAGCCGTCGCTCCTTAT 59.893 61.111 0.00 0.00 43.95 1.73
1479 1487 3.068691 AGCAGCCGTCGCTCCTTA 61.069 61.111 0.00 0.00 43.95 2.69
1598 1609 5.045869 TCCTAATCCCGCCCTAATTGATTAG 60.046 44.000 9.51 9.51 41.98 1.73
1603 1614 3.347216 CATCCTAATCCCGCCCTAATTG 58.653 50.000 0.00 0.00 0.00 2.32
1645 1656 0.385390 ACAACAGCAAAAGGGAAGCG 59.615 50.000 0.00 0.00 0.00 4.68
1722 1736 9.089601 TCGACACGAAACAATAACACATATAAT 57.910 29.630 0.00 0.00 31.06 1.28
1755 1770 4.444024 CGTTGCCATCCGTGCACG 62.444 66.667 31.77 31.77 38.72 5.34
1784 1800 0.318441 TTCTGGTCTGACGAAGCAGG 59.682 55.000 10.52 0.00 41.45 4.85
1818 1849 1.333308 AGATCGACGCAGACTGAGATG 59.667 52.381 13.56 4.81 0.00 2.90
1824 1855 1.366679 TTACGAGATCGACGCAGACT 58.633 50.000 9.58 0.00 43.02 3.24
1924 1964 2.444421 GACGGACCGGATAGGATATGT 58.556 52.381 20.00 0.00 45.00 2.29
1926 1966 2.140839 GGACGGACCGGATAGGATAT 57.859 55.000 20.00 0.00 45.00 1.63
1939 1979 6.099341 GTCCTTTTTATACTAAACGGACGGA 58.901 40.000 8.85 0.00 42.68 4.69
1950 1991 4.643334 GGCCCGATTTGTCCTTTTTATACT 59.357 41.667 0.00 0.00 0.00 2.12
1952 1993 3.628487 CGGCCCGATTTGTCCTTTTTATA 59.372 43.478 0.00 0.00 0.00 0.98
1959 2000 4.796495 GGCGGCCCGATTTGTCCT 62.796 66.667 7.68 0.00 0.00 3.85
1982 2023 1.265236 AAAATCCATTTGCTCCCGCA 58.735 45.000 0.00 0.00 46.24 5.69
2037 2078 2.010582 AAAAGCGGCGCAAACTTGGA 62.011 50.000 35.02 0.00 0.00 3.53
2118 2160 4.293648 CGTCCTGTGCCACCGACA 62.294 66.667 11.35 0.00 0.00 4.35
2141 2183 1.450642 GGAGGGGGCGGATAGAAAC 59.549 63.158 0.00 0.00 0.00 2.78
2187 2230 4.398319 GAACAGTGGGAAGAATGGAGAAA 58.602 43.478 0.00 0.00 0.00 2.52
2195 2238 1.064825 GAGGGGAACAGTGGGAAGAA 58.935 55.000 0.00 0.00 0.00 2.52
2332 2382 2.508928 GATCCGCCCCAAATCCGA 59.491 61.111 0.00 0.00 0.00 4.55
2449 2506 3.567797 GTGCAGATTCGAGCGGCC 61.568 66.667 9.27 0.00 0.00 6.13
2477 2534 0.736636 ATTCGTGTATCTGCCGACGA 59.263 50.000 0.00 0.00 38.97 4.20
2480 2537 0.821517 ACCATTCGTGTATCTGCCGA 59.178 50.000 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.