Multiple sequence alignment - TraesCS3B01G469600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G469600
chr3B
100.000
2665
0
0
1
2665
716340873
716338209
0.000000e+00
4922
1
TraesCS3B01G469600
chr3B
96.040
101
3
1
1
101
504483283
504483382
2.120000e-36
163
2
TraesCS3B01G469600
chr3D
91.133
1545
78
23
393
1906
540937567
540936051
0.000000e+00
2039
3
TraesCS3B01G469600
chr3D
91.200
250
20
2
104
352
327608010
327607762
3.290000e-89
339
4
TraesCS3B01G469600
chr3A
89.623
1590
87
35
346
1906
676108757
676107217
0.000000e+00
1951
5
TraesCS3B01G469600
chr3A
87.582
765
81
11
1905
2665
617066003
617066757
0.000000e+00
874
6
TraesCS3B01G469600
chr2D
89.660
764
69
8
1905
2665
502524863
502524107
0.000000e+00
965
7
TraesCS3B01G469600
chr2B
89.635
685
59
8
1984
2665
363743995
363744670
0.000000e+00
861
8
TraesCS3B01G469600
chr6A
86.815
766
79
17
1905
2665
500503420
500502672
0.000000e+00
835
9
TraesCS3B01G469600
chr4A
86.418
751
84
14
1905
2652
149092881
149092146
0.000000e+00
806
10
TraesCS3B01G469600
chr4A
84.935
770
101
12
1902
2665
56720635
56719875
0.000000e+00
765
11
TraesCS3B01G469600
chr4A
95.050
101
5
0
1
101
717814503
717814403
2.750000e-35
159
12
TraesCS3B01G469600
chr4D
85.438
776
90
19
1905
2665
396971004
396971771
0.000000e+00
785
13
TraesCS3B01G469600
chr4D
84.655
782
98
17
1893
2665
25983479
25984247
0.000000e+00
760
14
TraesCS3B01G469600
chr1A
84.407
776
100
15
1903
2664
534248558
534249326
0.000000e+00
743
15
TraesCS3B01G469600
chr7B
93.548
248
15
1
101
347
693273297
693273544
4.190000e-98
368
16
TraesCS3B01G469600
chr7B
94.286
105
5
1
1
105
368426031
368425928
2.750000e-35
159
17
TraesCS3B01G469600
chr7B
95.833
96
4
0
6
101
77436335
77436240
3.550000e-34
156
18
TraesCS3B01G469600
chr7D
91.498
247
20
1
101
346
569219138
569218892
3.290000e-89
339
19
TraesCS3B01G469600
chr7A
89.431
246
24
2
101
345
664513727
664513971
2.580000e-80
309
20
TraesCS3B01G469600
chr1B
94.624
186
10
0
162
347
638887887
638887702
3.360000e-74
289
21
TraesCS3B01G469600
chr1B
96.939
98
3
0
1
98
615210752
615210849
5.900000e-37
165
22
TraesCS3B01G469600
chr1B
96.000
100
3
1
1
100
612809978
612809880
7.630000e-36
161
23
TraesCS3B01G469600
chr5B
97.000
100
3
0
1
100
703108893
703108992
4.560000e-38
169
24
TraesCS3B01G469600
chr5B
94.444
108
4
2
1
107
31229775
31229669
5.900000e-37
165
25
TraesCS3B01G469600
chr5B
94.444
108
4
2
1
107
31322938
31322832
5.900000e-37
165
26
TraesCS3B01G469600
chrUn
97.917
96
2
0
5
100
42102672
42102767
1.640000e-37
167
27
TraesCS3B01G469600
chrUn
95.146
103
2
3
7
106
402131806
402131704
2.750000e-35
159
28
TraesCS3B01G469600
chrUn
95.146
103
2
3
7
106
475586674
475586776
2.750000e-35
159
29
TraesCS3B01G469600
chr6B
97.000
100
2
1
1
100
154821983
154821885
1.640000e-37
167
30
TraesCS3B01G469600
chr6B
96.078
102
4
0
1
102
542923320
542923219
1.640000e-37
167
31
TraesCS3B01G469600
chr6B
96.939
98
3
0
1
98
650953009
650953106
5.900000e-37
165
32
TraesCS3B01G469600
chr6B
96.040
101
3
1
1
101
75958782
75958683
2.120000e-36
163
33
TraesCS3B01G469600
chr5D
95.050
101
5
0
1
101
528552306
528552206
2.750000e-35
159
34
TraesCS3B01G469600
chr4B
94.059
101
6
0
1
101
522306645
522306745
1.280000e-33
154
35
TraesCS3B01G469600
chr4B
94.059
101
5
1
1
101
664535678
664535777
4.590000e-33
152
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G469600
chr3B
716338209
716340873
2664
True
4922
4922
100.000
1
2665
1
chr3B.!!$R1
2664
1
TraesCS3B01G469600
chr3D
540936051
540937567
1516
True
2039
2039
91.133
393
1906
1
chr3D.!!$R2
1513
2
TraesCS3B01G469600
chr3A
676107217
676108757
1540
True
1951
1951
89.623
346
1906
1
chr3A.!!$R1
1560
3
TraesCS3B01G469600
chr3A
617066003
617066757
754
False
874
874
87.582
1905
2665
1
chr3A.!!$F1
760
4
TraesCS3B01G469600
chr2D
502524107
502524863
756
True
965
965
89.660
1905
2665
1
chr2D.!!$R1
760
5
TraesCS3B01G469600
chr2B
363743995
363744670
675
False
861
861
89.635
1984
2665
1
chr2B.!!$F1
681
6
TraesCS3B01G469600
chr6A
500502672
500503420
748
True
835
835
86.815
1905
2665
1
chr6A.!!$R1
760
7
TraesCS3B01G469600
chr4A
149092146
149092881
735
True
806
806
86.418
1905
2652
1
chr4A.!!$R2
747
8
TraesCS3B01G469600
chr4A
56719875
56720635
760
True
765
765
84.935
1902
2665
1
chr4A.!!$R1
763
9
TraesCS3B01G469600
chr4D
396971004
396971771
767
False
785
785
85.438
1905
2665
1
chr4D.!!$F2
760
10
TraesCS3B01G469600
chr4D
25983479
25984247
768
False
760
760
84.655
1893
2665
1
chr4D.!!$F1
772
11
TraesCS3B01G469600
chr1A
534248558
534249326
768
False
743
743
84.407
1903
2664
1
chr1A.!!$F1
761
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
342
343
0.101399
CGGGAGGAGATCAGAACACG
59.899
60.0
0.0
0.0
0.0
4.49
F
343
344
0.179097
GGGAGGAGATCAGAACACGC
60.179
60.0
0.0
0.0
0.0
5.34
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1472
1480
0.249489
CCGTCGCTCCTTATCCTTGG
60.249
60.0
0.00
0.0
0.00
3.61
R
1784
1800
0.318441
TTCTGGTCTGACGAAGCAGG
59.682
55.0
10.52
0.0
41.45
4.85
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
26
27
1.593196
TTTTCTCTGCGTGTTCCTGG
58.407
50.000
0.00
0.00
0.00
4.45
27
28
0.250295
TTTCTCTGCGTGTTCCTGGG
60.250
55.000
0.00
0.00
0.00
4.45
28
29
2.731691
TTCTCTGCGTGTTCCTGGGC
62.732
60.000
0.00
0.00
0.00
5.36
29
30
4.329545
TCTGCGTGTTCCTGGGCC
62.330
66.667
0.00
0.00
0.00
5.80
43
44
4.256180
GGCCGGCCCACCAGATAG
62.256
72.222
36.64
0.00
34.57
2.08
44
45
4.937431
GCCGGCCCACCAGATAGC
62.937
72.222
18.11
0.00
34.57
2.97
45
46
4.609018
CCGGCCCACCAGATAGCG
62.609
72.222
0.00
0.00
34.57
4.26
46
47
3.536917
CGGCCCACCAGATAGCGA
61.537
66.667
0.00
0.00
34.57
4.93
47
48
2.109181
GGCCCACCAGATAGCGAC
59.891
66.667
0.00
0.00
35.26
5.19
48
49
2.731571
GGCCCACCAGATAGCGACA
61.732
63.158
0.00
0.00
35.26
4.35
49
50
1.227380
GCCCACCAGATAGCGACAG
60.227
63.158
0.00
0.00
0.00
3.51
50
51
1.961180
GCCCACCAGATAGCGACAGT
61.961
60.000
0.00
0.00
0.00
3.55
51
52
0.179100
CCCACCAGATAGCGACAGTG
60.179
60.000
0.00
0.00
0.00
3.66
52
53
0.179100
CCACCAGATAGCGACAGTGG
60.179
60.000
0.00
0.00
38.89
4.00
53
54
0.179100
CACCAGATAGCGACAGTGGG
60.179
60.000
0.00
0.00
32.13
4.61
54
55
1.330655
ACCAGATAGCGACAGTGGGG
61.331
60.000
0.00
0.00
32.13
4.96
55
56
1.443407
CAGATAGCGACAGTGGGGG
59.557
63.158
0.00
0.00
0.00
5.40
56
57
2.109181
GATAGCGACAGTGGGGGC
59.891
66.667
0.00
0.00
0.00
5.80
57
58
3.462199
GATAGCGACAGTGGGGGCC
62.462
68.421
0.00
0.00
0.00
5.80
61
62
3.953775
CGACAGTGGGGGCCAGTT
61.954
66.667
4.39
0.00
34.53
3.16
62
63
2.282462
GACAGTGGGGGCCAGTTG
60.282
66.667
4.39
0.00
34.53
3.16
63
64
4.603535
ACAGTGGGGGCCAGTTGC
62.604
66.667
4.39
0.00
34.53
4.17
72
73
2.746277
GCCAGTTGCCTGTACCGG
60.746
66.667
0.00
0.00
36.95
5.28
79
80
2.125431
GCCTGTACCGGCGCTTAA
60.125
61.111
12.88
0.00
40.79
1.85
80
81
1.523032
GCCTGTACCGGCGCTTAAT
60.523
57.895
12.88
0.00
40.79
1.40
81
82
1.772063
GCCTGTACCGGCGCTTAATG
61.772
60.000
12.88
0.00
40.79
1.90
82
83
1.641677
CTGTACCGGCGCTTAATGC
59.358
57.895
7.64
0.00
38.57
3.56
93
94
2.074547
GCTTAATGCGCCGTATAGGA
57.925
50.000
4.18
0.00
45.00
2.94
94
95
1.725164
GCTTAATGCGCCGTATAGGAC
59.275
52.381
4.18
0.00
45.00
3.85
95
96
2.334838
CTTAATGCGCCGTATAGGACC
58.665
52.381
4.18
0.00
45.00
4.46
96
97
1.624336
TAATGCGCCGTATAGGACCT
58.376
50.000
4.18
0.00
45.00
3.85
97
98
0.317479
AATGCGCCGTATAGGACCTC
59.683
55.000
4.18
0.00
45.00
3.85
98
99
1.533469
ATGCGCCGTATAGGACCTCC
61.533
60.000
4.18
0.00
45.00
4.30
99
100
2.928741
GCGCCGTATAGGACCTCCC
61.929
68.421
0.00
0.00
45.00
4.30
100
101
2.273912
CGCCGTATAGGACCTCCCC
61.274
68.421
0.00
0.00
45.00
4.81
101
102
1.912264
GCCGTATAGGACCTCCCCC
60.912
68.421
0.00
0.00
45.00
5.40
102
103
1.859234
CCGTATAGGACCTCCCCCT
59.141
63.158
0.00
0.00
45.00
4.79
103
104
0.542232
CCGTATAGGACCTCCCCCTG
60.542
65.000
0.00
0.00
45.00
4.45
104
105
0.187851
CGTATAGGACCTCCCCCTGT
59.812
60.000
0.00
0.00
35.30
4.00
105
106
1.426598
CGTATAGGACCTCCCCCTGTA
59.573
57.143
0.00
0.00
35.30
2.74
106
107
2.554785
CGTATAGGACCTCCCCCTGTAG
60.555
59.091
0.00
0.00
35.30
2.74
107
108
0.191314
ATAGGACCTCCCCCTGTAGC
59.809
60.000
0.00
0.00
35.30
3.58
108
109
2.294170
TAGGACCTCCCCCTGTAGCG
62.294
65.000
0.00
0.00
35.30
4.26
109
110
2.043248
GACCTCCCCCTGTAGCGA
60.043
66.667
0.00
0.00
0.00
4.93
110
111
1.457831
GACCTCCCCCTGTAGCGAT
60.458
63.158
0.00
0.00
0.00
4.58
111
112
0.178970
GACCTCCCCCTGTAGCGATA
60.179
60.000
0.00
0.00
0.00
2.92
112
113
0.178958
ACCTCCCCCTGTAGCGATAG
60.179
60.000
0.00
0.00
0.00
2.08
113
114
0.900647
CCTCCCCCTGTAGCGATAGG
60.901
65.000
2.43
2.43
33.74
2.57
128
129
3.429207
GCGATAGGTTCTAATTTCCGAGC
59.571
47.826
0.00
0.00
0.00
5.03
129
130
3.669122
CGATAGGTTCTAATTTCCGAGCG
59.331
47.826
0.00
0.00
31.03
5.03
130
131
4.618965
GATAGGTTCTAATTTCCGAGCGT
58.381
43.478
0.00
0.00
0.00
5.07
131
132
5.561532
CGATAGGTTCTAATTTCCGAGCGTA
60.562
44.000
0.00
0.00
32.89
4.42
132
133
3.778618
AGGTTCTAATTTCCGAGCGTAC
58.221
45.455
0.00
0.00
0.00
3.67
133
134
3.446516
AGGTTCTAATTTCCGAGCGTACT
59.553
43.478
0.00
0.00
0.00
2.73
134
135
3.795639
GGTTCTAATTTCCGAGCGTACTC
59.204
47.826
0.00
0.00
39.75
2.59
135
136
4.418392
GTTCTAATTTCCGAGCGTACTCA
58.582
43.478
0.00
0.00
43.66
3.41
136
137
4.288670
TCTAATTTCCGAGCGTACTCAG
57.711
45.455
0.00
0.00
43.66
3.35
137
138
1.641577
AATTTCCGAGCGTACTCAGC
58.358
50.000
0.00
0.00
43.66
4.26
138
139
0.530744
ATTTCCGAGCGTACTCAGCA
59.469
50.000
0.00
0.00
43.66
4.41
139
140
0.315886
TTTCCGAGCGTACTCAGCAA
59.684
50.000
0.00
0.00
43.66
3.91
140
141
0.315886
TTCCGAGCGTACTCAGCAAA
59.684
50.000
0.00
0.00
43.66
3.68
141
142
0.388134
TCCGAGCGTACTCAGCAAAC
60.388
55.000
0.00
0.00
43.66
2.93
142
143
1.352156
CCGAGCGTACTCAGCAAACC
61.352
60.000
0.00
0.00
43.66
3.27
143
144
1.674611
CGAGCGTACTCAGCAAACCG
61.675
60.000
0.00
0.00
43.66
4.44
144
145
0.666577
GAGCGTACTCAGCAAACCGT
60.667
55.000
0.00
0.00
42.93
4.83
145
146
0.249741
AGCGTACTCAGCAAACCGTT
60.250
50.000
0.00
0.00
37.01
4.44
146
147
0.584876
GCGTACTCAGCAAACCGTTT
59.415
50.000
0.00
0.00
34.19
3.60
147
148
1.794116
GCGTACTCAGCAAACCGTTTA
59.206
47.619
0.00
0.00
34.19
2.01
148
149
2.414138
GCGTACTCAGCAAACCGTTTAT
59.586
45.455
0.00
0.00
34.19
1.40
149
150
3.120442
GCGTACTCAGCAAACCGTTTATT
60.120
43.478
0.00
0.00
34.19
1.40
150
151
4.612033
GCGTACTCAGCAAACCGTTTATTT
60.612
41.667
0.00
0.00
34.19
1.40
151
152
5.389725
GCGTACTCAGCAAACCGTTTATTTA
60.390
40.000
0.00
0.00
34.19
1.40
152
153
6.238508
CGTACTCAGCAAACCGTTTATTTAG
58.761
40.000
0.00
0.00
0.00
1.85
153
154
5.043189
ACTCAGCAAACCGTTTATTTAGC
57.957
39.130
0.00
0.00
0.00
3.09
154
155
4.073169
TCAGCAAACCGTTTATTTAGCG
57.927
40.909
0.00
0.00
0.00
4.26
159
160
3.909957
CCGTTTATTTAGCGGTGGC
57.090
52.632
0.00
0.00
40.53
5.01
160
161
1.088306
CCGTTTATTTAGCGGTGGCA
58.912
50.000
0.00
0.00
43.41
4.92
161
162
1.063469
CCGTTTATTTAGCGGTGGCAG
59.937
52.381
0.00
0.00
43.41
4.85
162
163
1.063469
CGTTTATTTAGCGGTGGCAGG
59.937
52.381
0.00
0.00
43.41
4.85
163
164
2.361789
GTTTATTTAGCGGTGGCAGGA
58.638
47.619
0.00
0.00
43.41
3.86
164
165
2.032680
TTATTTAGCGGTGGCAGGAC
57.967
50.000
0.00
0.00
43.41
3.85
165
166
0.179094
TATTTAGCGGTGGCAGGACG
60.179
55.000
0.00
0.00
43.41
4.79
166
167
2.180159
ATTTAGCGGTGGCAGGACGT
62.180
55.000
0.00
0.00
43.41
4.34
167
168
2.386064
TTTAGCGGTGGCAGGACGTT
62.386
55.000
0.00
4.77
43.41
3.99
168
169
3.583276
TAGCGGTGGCAGGACGTTG
62.583
63.158
0.00
0.00
43.41
4.10
170
171
2.340809
CGGTGGCAGGACGTTGTA
59.659
61.111
0.00
0.00
0.00
2.41
171
172
1.301087
CGGTGGCAGGACGTTGTAA
60.301
57.895
0.00
0.00
0.00
2.41
172
173
0.881159
CGGTGGCAGGACGTTGTAAA
60.881
55.000
0.00
0.00
0.00
2.01
173
174
1.530323
GGTGGCAGGACGTTGTAAAT
58.470
50.000
0.00
0.00
0.00
1.40
174
175
2.702261
GGTGGCAGGACGTTGTAAATA
58.298
47.619
0.00
0.00
0.00
1.40
175
176
2.417586
GGTGGCAGGACGTTGTAAATAC
59.582
50.000
0.00
0.00
0.00
1.89
176
177
2.093152
GTGGCAGGACGTTGTAAATACG
59.907
50.000
0.00
0.00
44.20
3.06
177
178
1.662122
GGCAGGACGTTGTAAATACGG
59.338
52.381
0.00
0.00
42.99
4.02
178
179
2.340337
GCAGGACGTTGTAAATACGGT
58.660
47.619
0.00
0.00
42.99
4.83
179
180
3.510719
GCAGGACGTTGTAAATACGGTA
58.489
45.455
0.00
0.00
42.99
4.02
180
181
3.925913
GCAGGACGTTGTAAATACGGTAA
59.074
43.478
0.00
0.00
42.99
2.85
181
182
4.388469
GCAGGACGTTGTAAATACGGTAAA
59.612
41.667
0.00
0.00
42.99
2.01
182
183
5.668621
GCAGGACGTTGTAAATACGGTAAAC
60.669
44.000
0.00
0.00
42.99
2.01
183
184
5.634859
CAGGACGTTGTAAATACGGTAAACT
59.365
40.000
0.00
0.00
42.99
2.66
184
185
6.146021
CAGGACGTTGTAAATACGGTAAACTT
59.854
38.462
0.00
0.00
42.99
2.66
185
186
6.366061
AGGACGTTGTAAATACGGTAAACTTC
59.634
38.462
0.00
0.00
42.99
3.01
186
187
6.145371
GGACGTTGTAAATACGGTAAACTTCA
59.855
38.462
0.00
0.00
42.99
3.02
187
188
7.109006
ACGTTGTAAATACGGTAAACTTCAG
57.891
36.000
0.00
0.00
42.99
3.02
188
189
6.011277
CGTTGTAAATACGGTAAACTTCAGC
58.989
40.000
0.00
0.00
35.47
4.26
189
190
6.128742
CGTTGTAAATACGGTAAACTTCAGCT
60.129
38.462
0.00
0.00
35.47
4.24
190
191
7.569957
CGTTGTAAATACGGTAAACTTCAGCTT
60.570
37.037
0.00
0.00
35.47
3.74
191
192
7.733402
TGTAAATACGGTAAACTTCAGCTTT
57.267
32.000
0.00
0.00
0.00
3.51
192
193
8.156994
TGTAAATACGGTAAACTTCAGCTTTT
57.843
30.769
0.00
0.00
0.00
2.27
193
194
8.284693
TGTAAATACGGTAAACTTCAGCTTTTC
58.715
33.333
0.00
0.00
0.00
2.29
194
195
5.874895
ATACGGTAAACTTCAGCTTTTCC
57.125
39.130
0.00
0.00
0.00
3.13
195
196
3.547746
ACGGTAAACTTCAGCTTTTCCA
58.452
40.909
0.00
0.00
0.00
3.53
196
197
3.949113
ACGGTAAACTTCAGCTTTTCCAA
59.051
39.130
0.00
0.00
0.00
3.53
197
198
4.583073
ACGGTAAACTTCAGCTTTTCCAAT
59.417
37.500
0.00
0.00
0.00
3.16
198
199
5.154222
CGGTAAACTTCAGCTTTTCCAATC
58.846
41.667
0.00
0.00
0.00
2.67
199
200
5.154222
GGTAAACTTCAGCTTTTCCAATCG
58.846
41.667
0.00
0.00
0.00
3.34
200
201
3.923017
AACTTCAGCTTTTCCAATCGG
57.077
42.857
0.00
0.00
0.00
4.18
201
202
2.863809
ACTTCAGCTTTTCCAATCGGT
58.136
42.857
0.00
0.00
0.00
4.69
202
203
2.554032
ACTTCAGCTTTTCCAATCGGTG
59.446
45.455
0.00
0.00
0.00
4.94
211
212
3.590824
CAATCGGTGGAGTTGGGC
58.409
61.111
0.00
0.00
0.00
5.36
212
213
2.046285
CAATCGGTGGAGTTGGGCC
61.046
63.158
0.00
0.00
0.00
5.80
213
214
2.231380
AATCGGTGGAGTTGGGCCT
61.231
57.895
4.53
0.00
0.00
5.19
214
215
1.789576
AATCGGTGGAGTTGGGCCTT
61.790
55.000
4.53
0.00
0.00
4.35
215
216
2.198304
ATCGGTGGAGTTGGGCCTTC
62.198
60.000
4.53
0.00
0.00
3.46
216
217
2.035783
GGTGGAGTTGGGCCTTCC
59.964
66.667
4.53
10.15
0.00
3.46
217
218
2.539081
GGTGGAGTTGGGCCTTCCT
61.539
63.158
18.61
6.83
36.20
3.36
218
219
1.002011
GTGGAGTTGGGCCTTCCTC
60.002
63.158
18.61
13.86
36.20
3.71
219
220
2.269241
GGAGTTGGGCCTTCCTCG
59.731
66.667
4.53
0.00
36.20
4.63
220
221
2.436824
GAGTTGGGCCTTCCTCGC
60.437
66.667
4.53
0.00
36.20
5.03
221
222
2.930562
AGTTGGGCCTTCCTCGCT
60.931
61.111
4.53
0.00
36.20
4.93
222
223
2.436824
GTTGGGCCTTCCTCGCTC
60.437
66.667
4.53
0.00
36.20
5.03
223
224
3.717294
TTGGGCCTTCCTCGCTCC
61.717
66.667
4.53
0.00
36.20
4.70
225
226
4.168291
GGGCCTTCCTCGCTCCAG
62.168
72.222
0.84
0.00
0.00
3.86
226
227
3.077556
GGCCTTCCTCGCTCCAGA
61.078
66.667
0.00
0.00
0.00
3.86
227
228
2.439104
GGCCTTCCTCGCTCCAGAT
61.439
63.158
0.00
0.00
0.00
2.90
228
229
1.524482
GCCTTCCTCGCTCCAGATT
59.476
57.895
0.00
0.00
0.00
2.40
229
230
0.107459
GCCTTCCTCGCTCCAGATTT
60.107
55.000
0.00
0.00
0.00
2.17
230
231
1.680249
GCCTTCCTCGCTCCAGATTTT
60.680
52.381
0.00
0.00
0.00
1.82
231
232
2.716217
CCTTCCTCGCTCCAGATTTTT
58.284
47.619
0.00
0.00
0.00
1.94
251
252
4.634184
TTTCAGTAGGATCGACTACAGC
57.366
45.455
13.78
0.00
44.49
4.40
252
253
3.562343
TCAGTAGGATCGACTACAGCT
57.438
47.619
13.78
0.00
44.49
4.24
253
254
3.887352
TCAGTAGGATCGACTACAGCTT
58.113
45.455
13.78
0.00
44.49
3.74
254
255
4.270834
TCAGTAGGATCGACTACAGCTTT
58.729
43.478
13.78
0.00
44.49
3.51
255
256
4.096532
TCAGTAGGATCGACTACAGCTTTG
59.903
45.833
13.78
5.07
44.49
2.77
256
257
2.301577
AGGATCGACTACAGCTTTGC
57.698
50.000
0.00
0.00
0.00
3.68
257
258
0.924090
GGATCGACTACAGCTTTGCG
59.076
55.000
0.00
0.00
0.00
4.85
258
259
1.469251
GGATCGACTACAGCTTTGCGA
60.469
52.381
0.00
0.00
0.00
5.10
259
260
2.259618
GATCGACTACAGCTTTGCGAA
58.740
47.619
0.00
0.00
0.00
4.70
260
261
1.698165
TCGACTACAGCTTTGCGAAG
58.302
50.000
9.54
9.54
35.92
3.79
283
284
3.600388
CAGCTTCTGGAGGTTATTTCGT
58.400
45.455
0.00
0.00
32.70
3.85
284
285
4.003648
CAGCTTCTGGAGGTTATTTCGTT
58.996
43.478
0.00
0.00
32.70
3.85
285
286
4.093556
CAGCTTCTGGAGGTTATTTCGTTC
59.906
45.833
0.00
0.00
32.70
3.95
286
287
3.062234
GCTTCTGGAGGTTATTTCGTTCG
59.938
47.826
0.00
0.00
0.00
3.95
287
288
3.241067
TCTGGAGGTTATTTCGTTCGG
57.759
47.619
0.00
0.00
0.00
4.30
288
289
1.664151
CTGGAGGTTATTTCGTTCGGC
59.336
52.381
0.00
0.00
0.00
5.54
289
290
1.276989
TGGAGGTTATTTCGTTCGGCT
59.723
47.619
0.00
0.00
0.00
5.52
290
291
1.931841
GGAGGTTATTTCGTTCGGCTC
59.068
52.381
0.00
0.00
0.00
4.70
291
292
2.418334
GGAGGTTATTTCGTTCGGCTCT
60.418
50.000
0.00
0.00
0.00
4.09
292
293
3.259902
GAGGTTATTTCGTTCGGCTCTT
58.740
45.455
0.00
0.00
0.00
2.85
293
294
4.427312
GAGGTTATTTCGTTCGGCTCTTA
58.573
43.478
0.00
0.00
0.00
2.10
294
295
5.019785
AGGTTATTTCGTTCGGCTCTTAT
57.980
39.130
0.00
0.00
0.00
1.73
295
296
5.048507
AGGTTATTTCGTTCGGCTCTTATC
58.951
41.667
0.00
0.00
0.00
1.75
296
297
5.048507
GGTTATTTCGTTCGGCTCTTATCT
58.951
41.667
0.00
0.00
0.00
1.98
297
298
5.050972
GGTTATTTCGTTCGGCTCTTATCTG
60.051
44.000
0.00
0.00
0.00
2.90
298
299
1.922570
TTCGTTCGGCTCTTATCTGC
58.077
50.000
0.00
0.00
0.00
4.26
299
300
1.103803
TCGTTCGGCTCTTATCTGCT
58.896
50.000
0.00
0.00
0.00
4.24
300
301
1.065701
TCGTTCGGCTCTTATCTGCTC
59.934
52.381
0.00
0.00
0.00
4.26
301
302
1.066303
CGTTCGGCTCTTATCTGCTCT
59.934
52.381
0.00
0.00
0.00
4.09
302
303
2.290916
CGTTCGGCTCTTATCTGCTCTA
59.709
50.000
0.00
0.00
0.00
2.43
303
304
3.608241
CGTTCGGCTCTTATCTGCTCTAG
60.608
52.174
0.00
0.00
0.00
2.43
304
305
2.509569
TCGGCTCTTATCTGCTCTAGG
58.490
52.381
0.00
0.00
0.00
3.02
305
306
2.106684
TCGGCTCTTATCTGCTCTAGGA
59.893
50.000
0.00
0.00
0.00
2.94
306
307
2.887783
CGGCTCTTATCTGCTCTAGGAA
59.112
50.000
0.00
0.00
0.00
3.36
307
308
3.319405
CGGCTCTTATCTGCTCTAGGAAA
59.681
47.826
0.00
0.00
0.00
3.13
308
309
4.021544
CGGCTCTTATCTGCTCTAGGAAAT
60.022
45.833
0.00
0.00
0.00
2.17
309
310
5.510520
CGGCTCTTATCTGCTCTAGGAAATT
60.511
44.000
0.00
0.00
0.00
1.82
310
311
5.700373
GGCTCTTATCTGCTCTAGGAAATTG
59.300
44.000
0.00
0.00
0.00
2.32
311
312
6.287525
GCTCTTATCTGCTCTAGGAAATTGT
58.712
40.000
0.00
0.00
0.00
2.71
312
313
6.202570
GCTCTTATCTGCTCTAGGAAATTGTG
59.797
42.308
0.00
0.00
0.00
3.33
313
314
7.423844
TCTTATCTGCTCTAGGAAATTGTGA
57.576
36.000
0.00
0.00
0.00
3.58
314
315
7.851228
TCTTATCTGCTCTAGGAAATTGTGAA
58.149
34.615
0.00
0.00
0.00
3.18
315
316
7.984050
TCTTATCTGCTCTAGGAAATTGTGAAG
59.016
37.037
0.00
0.00
0.00
3.02
316
317
5.489792
TCTGCTCTAGGAAATTGTGAAGT
57.510
39.130
0.00
0.00
0.00
3.01
317
318
5.240891
TCTGCTCTAGGAAATTGTGAAGTG
58.759
41.667
0.00
0.00
0.00
3.16
318
319
4.973168
TGCTCTAGGAAATTGTGAAGTGT
58.027
39.130
0.00
0.00
0.00
3.55
319
320
4.756642
TGCTCTAGGAAATTGTGAAGTGTG
59.243
41.667
0.00
0.00
0.00
3.82
320
321
4.154918
GCTCTAGGAAATTGTGAAGTGTGG
59.845
45.833
0.00
0.00
0.00
4.17
321
322
5.551233
CTCTAGGAAATTGTGAAGTGTGGA
58.449
41.667
0.00
0.00
0.00
4.02
322
323
5.551233
TCTAGGAAATTGTGAAGTGTGGAG
58.449
41.667
0.00
0.00
0.00
3.86
323
324
2.887152
AGGAAATTGTGAAGTGTGGAGC
59.113
45.455
0.00
0.00
0.00
4.70
324
325
2.350772
GGAAATTGTGAAGTGTGGAGCG
60.351
50.000
0.00
0.00
0.00
5.03
325
326
1.238439
AATTGTGAAGTGTGGAGCGG
58.762
50.000
0.00
0.00
0.00
5.52
326
327
0.606401
ATTGTGAAGTGTGGAGCGGG
60.606
55.000
0.00
0.00
0.00
6.13
327
328
1.691195
TTGTGAAGTGTGGAGCGGGA
61.691
55.000
0.00
0.00
0.00
5.14
328
329
1.374758
GTGAAGTGTGGAGCGGGAG
60.375
63.158
0.00
0.00
0.00
4.30
329
330
2.266055
GAAGTGTGGAGCGGGAGG
59.734
66.667
0.00
0.00
0.00
4.30
330
331
2.203788
AAGTGTGGAGCGGGAGGA
60.204
61.111
0.00
0.00
0.00
3.71
331
332
2.232298
GAAGTGTGGAGCGGGAGGAG
62.232
65.000
0.00
0.00
0.00
3.69
332
333
2.680352
GTGTGGAGCGGGAGGAGA
60.680
66.667
0.00
0.00
0.00
3.71
333
334
2.060980
GTGTGGAGCGGGAGGAGAT
61.061
63.158
0.00
0.00
0.00
2.75
334
335
1.758514
TGTGGAGCGGGAGGAGATC
60.759
63.158
0.00
0.00
0.00
2.75
335
336
1.758514
GTGGAGCGGGAGGAGATCA
60.759
63.158
0.00
0.00
0.00
2.92
336
337
1.456518
TGGAGCGGGAGGAGATCAG
60.457
63.158
0.00
0.00
0.00
2.90
337
338
1.152652
GGAGCGGGAGGAGATCAGA
60.153
63.158
0.00
0.00
0.00
3.27
338
339
0.757188
GGAGCGGGAGGAGATCAGAA
60.757
60.000
0.00
0.00
0.00
3.02
339
340
0.387565
GAGCGGGAGGAGATCAGAAC
59.612
60.000
0.00
0.00
0.00
3.01
340
341
0.324738
AGCGGGAGGAGATCAGAACA
60.325
55.000
0.00
0.00
0.00
3.18
341
342
0.179097
GCGGGAGGAGATCAGAACAC
60.179
60.000
0.00
0.00
0.00
3.32
342
343
0.101399
CGGGAGGAGATCAGAACACG
59.899
60.000
0.00
0.00
0.00
4.49
343
344
0.179097
GGGAGGAGATCAGAACACGC
60.179
60.000
0.00
0.00
0.00
5.34
344
345
0.179097
GGAGGAGATCAGAACACGCC
60.179
60.000
0.00
0.00
0.00
5.68
348
349
0.532573
GAGATCAGAACACGCCCTGA
59.467
55.000
0.00
0.00
42.78
3.86
351
352
1.464997
GATCAGAACACGCCCTGAAAC
59.535
52.381
0.00
0.00
42.02
2.78
359
360
2.285977
CACGCCCTGAAACCCTATTAC
58.714
52.381
0.00
0.00
0.00
1.89
382
383
6.288294
ACTTTGGAATAAAACTCTTTTGCCC
58.712
36.000
0.00
0.00
34.19
5.36
383
384
4.882842
TGGAATAAAACTCTTTTGCCCC
57.117
40.909
0.00
0.00
34.19
5.80
384
385
3.580895
TGGAATAAAACTCTTTTGCCCCC
59.419
43.478
0.00
0.00
34.19
5.40
422
423
7.687941
AAGTCCGACATTAACATTTCTCAAT
57.312
32.000
0.40
0.00
0.00
2.57
482
485
3.334054
GCAGCTTCCCCACCTCCT
61.334
66.667
0.00
0.00
0.00
3.69
578
581
3.918253
ATGACGTGCCCCGCAACAT
62.918
57.895
0.00
0.00
41.47
2.71
586
592
2.406616
CCCCGCAACATTTCTCCGG
61.407
63.158
0.00
0.00
38.71
5.14
652
659
2.670148
GGCCGACCTGTCAGGGAAT
61.670
63.158
23.06
1.61
40.58
3.01
718
725
0.511221
GACGCGTGCAGCTTTTCTTA
59.489
50.000
20.70
0.00
45.59
2.10
719
726
0.941542
ACGCGTGCAGCTTTTCTTAA
59.058
45.000
12.93
0.00
45.59
1.85
721
728
1.686464
GCGTGCAGCTTTTCTTAACC
58.314
50.000
0.00
0.00
44.04
2.85
722
729
1.950472
CGTGCAGCTTTTCTTAACCG
58.050
50.000
0.00
0.00
0.00
4.44
723
730
1.399727
CGTGCAGCTTTTCTTAACCGG
60.400
52.381
0.00
0.00
0.00
5.28
724
731
0.596082
TGCAGCTTTTCTTAACCGGC
59.404
50.000
0.00
0.00
0.00
6.13
728
735
2.095212
CAGCTTTTCTTAACCGGCCTTC
60.095
50.000
0.00
0.00
0.00
3.46
729
736
1.135774
GCTTTTCTTAACCGGCCTTCG
60.136
52.381
0.00
0.00
38.88
3.79
767
774
0.608035
TCATTTGCCTCGACCCAACC
60.608
55.000
0.00
0.00
0.00
3.77
772
779
1.259142
TGCCTCGACCCAACCGAATA
61.259
55.000
0.00
0.00
35.48
1.75
864
872
4.404098
CTAAACAGGCCGCGGGGT
62.404
66.667
29.38
5.79
34.97
4.95
924
932
2.666596
GATGCTGACCGGGCCCTAAG
62.667
65.000
22.43
12.64
0.00
2.18
925
933
4.858680
GCTGACCGGGCCCTAAGC
62.859
72.222
22.43
18.64
42.60
3.09
1012
1020
1.166531
CGGCGAATCCCATTCCTTCC
61.167
60.000
0.00
0.00
35.89
3.46
1013
1021
0.183731
GGCGAATCCCATTCCTTCCT
59.816
55.000
0.00
0.00
35.89
3.36
1017
1025
2.224402
CGAATCCCATTCCTTCCTCTCC
60.224
54.545
0.00
0.00
35.89
3.71
1018
1026
1.826447
ATCCCATTCCTTCCTCTCCC
58.174
55.000
0.00
0.00
0.00
4.30
1019
1027
0.421495
TCCCATTCCTTCCTCTCCCA
59.579
55.000
0.00
0.00
0.00
4.37
1045
1053
0.620121
CAGCTCCTCCTCCTTCCCTT
60.620
60.000
0.00
0.00
0.00
3.95
1046
1054
0.326143
AGCTCCTCCTCCTTCCCTTC
60.326
60.000
0.00
0.00
0.00
3.46
1047
1055
1.341913
GCTCCTCCTCCTTCCCTTCC
61.342
65.000
0.00
0.00
0.00
3.46
1048
1056
0.341609
CTCCTCCTCCTTCCCTTCCT
59.658
60.000
0.00
0.00
0.00
3.36
1049
1057
0.340208
TCCTCCTCCTTCCCTTCCTC
59.660
60.000
0.00
0.00
0.00
3.71
1050
1058
1.045911
CCTCCTCCTTCCCTTCCTCG
61.046
65.000
0.00
0.00
0.00
4.63
1078
1086
1.076632
TCCTCTTCTCCGCTCTCCC
60.077
63.158
0.00
0.00
0.00
4.30
1102
1110
4.059459
GTGCGCTCGTGTTCACCG
62.059
66.667
9.73
0.00
0.00
4.94
1365
1373
2.431942
GTGACGTTCGCCATCGGT
60.432
61.111
0.00
0.00
36.13
4.69
1461
1469
2.517402
CTCCTCCCCTCGTCCTCG
60.517
72.222
0.00
0.00
38.55
4.63
1462
1470
4.816984
TCCTCCCCTCGTCCTCGC
62.817
72.222
0.00
0.00
36.96
5.03
1472
1480
3.519930
GTCCTCGCCGTCCTCCTC
61.520
72.222
0.00
0.00
0.00
3.71
1473
1481
4.816984
TCCTCGCCGTCCTCCTCC
62.817
72.222
0.00
0.00
0.00
4.30
1475
1483
3.068691
CTCGCCGTCCTCCTCCAA
61.069
66.667
0.00
0.00
0.00
3.53
1476
1484
3.068691
TCGCCGTCCTCCTCCAAG
61.069
66.667
0.00
0.00
0.00
3.61
1477
1485
4.148825
CGCCGTCCTCCTCCAAGG
62.149
72.222
0.00
0.00
37.81
3.61
1478
1486
2.683933
GCCGTCCTCCTCCAAGGA
60.684
66.667
0.00
0.00
43.43
3.36
1479
1487
2.066999
GCCGTCCTCCTCCAAGGAT
61.067
63.158
0.00
0.00
46.90
3.24
1573
1584
4.673298
TCGTGGCGTGGCGTTGAT
62.673
61.111
0.00
0.00
0.00
2.57
1722
1736
1.323412
ACCGGCACAAGCAACATTTA
58.677
45.000
0.00
0.00
44.61
1.40
1755
1770
4.663636
ATTGTTTCGTGTCGAGAATTCC
57.336
40.909
0.65
0.00
37.14
3.01
1784
1800
2.474712
GCAACGTGCTTCGCTACC
59.525
61.111
0.00
0.00
44.19
3.18
1818
1849
5.800941
CAGACCAGAAAACTGAGACGTATAC
59.199
44.000
0.00
0.00
34.07
1.47
1924
1964
2.280524
CCAACTCCACCGCGTGAA
60.281
61.111
4.92
0.00
35.23
3.18
1926
1966
1.885388
CAACTCCACCGCGTGAACA
60.885
57.895
4.92
0.00
35.23
3.18
1939
1979
2.029290
GCGTGAACATATCCTATCCGGT
60.029
50.000
0.00
0.00
0.00
5.28
1969
2010
8.658609
TCCGTTTAGTATAAAAAGGACAAATCG
58.341
33.333
1.71
0.00
40.58
3.34
1973
2014
4.643334
AGTATAAAAAGGACAAATCGGGCC
59.357
41.667
0.00
0.00
0.00
5.80
2037
2078
0.958822
GTTTTTGACCCATCTGCGGT
59.041
50.000
0.00
0.00
35.88
5.68
2071
2112
0.309612
CTTTTGGGGTGAAACGGACG
59.690
55.000
0.00
0.00
38.12
4.79
2081
2122
3.562779
AAACGGACGTCACGCGGAT
62.563
57.895
18.91
2.91
46.52
4.18
2187
2230
3.953775
CCGCACCCCACTCCACTT
61.954
66.667
0.00
0.00
0.00
3.16
2195
2238
1.355720
CCCCACTCCACTTTTCTCCAT
59.644
52.381
0.00
0.00
0.00
3.41
2204
2247
3.507622
CCACTTTTCTCCATTCTTCCCAC
59.492
47.826
0.00
0.00
0.00
4.61
2301
2351
4.770874
GCCGCCGAGCTACCCAAA
62.771
66.667
0.00
0.00
0.00
3.28
2371
2421
4.069232
CGGTCTTGAGCTCGCCCA
62.069
66.667
9.64
0.00
0.00
5.36
2499
2556
0.821517
TCGGCAGATACACGAATGGT
59.178
50.000
0.00
0.00
33.21
3.55
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
6
7
1.946768
CCAGGAACACGCAGAGAAAAA
59.053
47.619
0.00
0.00
0.00
1.94
7
8
1.593196
CCAGGAACACGCAGAGAAAA
58.407
50.000
0.00
0.00
0.00
2.29
8
9
0.250295
CCCAGGAACACGCAGAGAAA
60.250
55.000
0.00
0.00
0.00
2.52
9
10
1.371183
CCCAGGAACACGCAGAGAA
59.629
57.895
0.00
0.00
0.00
2.87
10
11
3.059982
CCCAGGAACACGCAGAGA
58.940
61.111
0.00
0.00
0.00
3.10
11
12
2.743928
GCCCAGGAACACGCAGAG
60.744
66.667
0.00
0.00
0.00
3.35
12
13
4.329545
GGCCCAGGAACACGCAGA
62.330
66.667
0.00
0.00
0.00
4.26
26
27
4.256180
CTATCTGGTGGGCCGGCC
62.256
72.222
38.57
38.57
40.99
6.13
27
28
4.937431
GCTATCTGGTGGGCCGGC
62.937
72.222
21.18
21.18
40.99
6.13
28
29
4.609018
CGCTATCTGGTGGGCCGG
62.609
72.222
0.00
0.00
42.59
6.13
29
30
3.536917
TCGCTATCTGGTGGGCCG
61.537
66.667
0.00
0.00
37.67
6.13
30
31
2.109181
GTCGCTATCTGGTGGGCC
59.891
66.667
0.00
0.00
0.00
5.80
31
32
1.227380
CTGTCGCTATCTGGTGGGC
60.227
63.158
0.00
0.00
0.00
5.36
32
33
0.179100
CACTGTCGCTATCTGGTGGG
60.179
60.000
0.00
0.00
0.00
4.61
33
34
0.179100
CCACTGTCGCTATCTGGTGG
60.179
60.000
0.00
0.00
38.26
4.61
34
35
0.179100
CCCACTGTCGCTATCTGGTG
60.179
60.000
0.00
0.00
0.00
4.17
35
36
1.330655
CCCCACTGTCGCTATCTGGT
61.331
60.000
0.00
0.00
0.00
4.00
36
37
1.443407
CCCCACTGTCGCTATCTGG
59.557
63.158
0.00
0.00
0.00
3.86
37
38
1.443407
CCCCCACTGTCGCTATCTG
59.557
63.158
0.00
0.00
0.00
2.90
38
39
2.435693
GCCCCCACTGTCGCTATCT
61.436
63.158
0.00
0.00
0.00
1.98
39
40
2.109181
GCCCCCACTGTCGCTATC
59.891
66.667
0.00
0.00
0.00
2.08
40
41
3.480133
GGCCCCCACTGTCGCTAT
61.480
66.667
0.00
0.00
0.00
2.97
44
45
3.953775
AACTGGCCCCCACTGTCG
61.954
66.667
0.00
0.00
0.00
4.35
45
46
2.282462
CAACTGGCCCCCACTGTC
60.282
66.667
0.00
0.00
0.00
3.51
46
47
4.603535
GCAACTGGCCCCCACTGT
62.604
66.667
0.00
0.00
36.11
3.55
63
64
1.772063
GCATTAAGCGCCGGTACAGG
61.772
60.000
7.81
7.81
0.00
4.00
64
65
1.641677
GCATTAAGCGCCGGTACAG
59.358
57.895
2.29
0.00
0.00
2.74
65
66
3.802507
GCATTAAGCGCCGGTACA
58.197
55.556
2.29
0.00
0.00
2.90
74
75
1.725164
GTCCTATACGGCGCATTAAGC
59.275
52.381
10.83
0.00
40.87
3.09
75
76
2.029290
AGGTCCTATACGGCGCATTAAG
60.029
50.000
10.83
0.00
0.00
1.85
76
77
1.965643
AGGTCCTATACGGCGCATTAA
59.034
47.619
10.83
0.00
0.00
1.40
77
78
1.542915
GAGGTCCTATACGGCGCATTA
59.457
52.381
10.83
0.00
0.00
1.90
78
79
0.317479
GAGGTCCTATACGGCGCATT
59.683
55.000
10.83
0.00
0.00
3.56
79
80
1.533469
GGAGGTCCTATACGGCGCAT
61.533
60.000
10.83
0.92
0.00
4.73
80
81
2.198287
GGAGGTCCTATACGGCGCA
61.198
63.158
10.83
0.00
0.00
6.09
81
82
2.649614
GGAGGTCCTATACGGCGC
59.350
66.667
6.90
0.00
0.00
6.53
82
83
2.273912
GGGGAGGTCCTATACGGCG
61.274
68.421
4.80
4.80
35.95
6.46
83
84
1.912264
GGGGGAGGTCCTATACGGC
60.912
68.421
0.00
0.00
35.95
5.68
84
85
0.542232
CAGGGGGAGGTCCTATACGG
60.542
65.000
0.00
0.00
35.95
4.02
85
86
0.187851
ACAGGGGGAGGTCCTATACG
59.812
60.000
0.00
0.00
35.95
3.06
86
87
2.822388
GCTACAGGGGGAGGTCCTATAC
60.822
59.091
0.00
0.00
35.95
1.47
87
88
1.432024
GCTACAGGGGGAGGTCCTATA
59.568
57.143
0.00
0.00
35.95
1.31
88
89
0.191314
GCTACAGGGGGAGGTCCTAT
59.809
60.000
0.00
0.00
35.95
2.57
89
90
1.624753
GCTACAGGGGGAGGTCCTA
59.375
63.158
0.00
0.00
35.95
2.94
90
91
2.369001
GCTACAGGGGGAGGTCCT
59.631
66.667
0.00
0.00
35.95
3.85
91
92
2.948801
ATCGCTACAGGGGGAGGTCC
62.949
65.000
0.00
0.00
0.00
4.46
92
93
0.178970
TATCGCTACAGGGGGAGGTC
60.179
60.000
0.00
0.00
0.00
3.85
93
94
0.178958
CTATCGCTACAGGGGGAGGT
60.179
60.000
0.00
0.00
0.00
3.85
94
95
0.900647
CCTATCGCTACAGGGGGAGG
60.901
65.000
0.00
0.00
0.00
4.30
95
96
0.178958
ACCTATCGCTACAGGGGGAG
60.179
60.000
0.00
0.00
36.15
4.30
96
97
0.263765
AACCTATCGCTACAGGGGGA
59.736
55.000
0.00
0.00
36.15
4.81
97
98
0.680061
GAACCTATCGCTACAGGGGG
59.320
60.000
0.00
0.00
36.15
5.40
98
99
1.705873
AGAACCTATCGCTACAGGGG
58.294
55.000
0.00
0.00
36.15
4.79
99
100
5.470047
AATTAGAACCTATCGCTACAGGG
57.530
43.478
0.00
0.00
36.15
4.45
100
101
5.927115
GGAAATTAGAACCTATCGCTACAGG
59.073
44.000
0.00
0.00
37.97
4.00
101
102
5.629849
CGGAAATTAGAACCTATCGCTACAG
59.370
44.000
0.00
0.00
0.00
2.74
102
103
5.300034
TCGGAAATTAGAACCTATCGCTACA
59.700
40.000
0.00
0.00
0.00
2.74
103
104
5.766222
TCGGAAATTAGAACCTATCGCTAC
58.234
41.667
0.00
0.00
0.00
3.58
104
105
5.564259
GCTCGGAAATTAGAACCTATCGCTA
60.564
44.000
0.00
0.00
0.00
4.26
105
106
4.796618
GCTCGGAAATTAGAACCTATCGCT
60.797
45.833
0.00
0.00
0.00
4.93
106
107
3.429207
GCTCGGAAATTAGAACCTATCGC
59.571
47.826
0.00
0.00
0.00
4.58
107
108
3.669122
CGCTCGGAAATTAGAACCTATCG
59.331
47.826
0.00
0.00
0.00
2.92
108
109
4.618965
ACGCTCGGAAATTAGAACCTATC
58.381
43.478
0.00
0.00
0.00
2.08
109
110
4.667519
ACGCTCGGAAATTAGAACCTAT
57.332
40.909
0.00
0.00
0.00
2.57
110
111
4.641989
AGTACGCTCGGAAATTAGAACCTA
59.358
41.667
0.00
0.00
0.00
3.08
111
112
3.446516
AGTACGCTCGGAAATTAGAACCT
59.553
43.478
0.00
0.00
0.00
3.50
112
113
3.778618
AGTACGCTCGGAAATTAGAACC
58.221
45.455
0.00
0.00
0.00
3.62
113
114
4.418392
TGAGTACGCTCGGAAATTAGAAC
58.582
43.478
0.00
0.00
44.48
3.01
114
115
4.707030
TGAGTACGCTCGGAAATTAGAA
57.293
40.909
0.00
0.00
44.48
2.10
124
125
1.674611
CGGTTTGCTGAGTACGCTCG
61.675
60.000
0.00
0.00
44.48
5.03
125
126
0.666577
ACGGTTTGCTGAGTACGCTC
60.667
55.000
0.00
0.00
41.97
5.03
126
127
0.249741
AACGGTTTGCTGAGTACGCT
60.250
50.000
0.00
0.00
0.00
5.07
127
128
0.584876
AAACGGTTTGCTGAGTACGC
59.415
50.000
5.12
0.00
0.00
4.42
128
129
4.657075
AATAAACGGTTTGCTGAGTACG
57.343
40.909
16.05
0.00
0.00
3.67
129
130
6.019762
GCTAAATAAACGGTTTGCTGAGTAC
58.980
40.000
16.05
0.00
0.00
2.73
130
131
5.163933
CGCTAAATAAACGGTTTGCTGAGTA
60.164
40.000
16.05
0.00
0.00
2.59
131
132
4.378046
CGCTAAATAAACGGTTTGCTGAGT
60.378
41.667
16.05
0.00
0.00
3.41
132
133
4.088648
CGCTAAATAAACGGTTTGCTGAG
58.911
43.478
16.05
9.10
0.00
3.35
133
134
3.120130
CCGCTAAATAAACGGTTTGCTGA
60.120
43.478
16.05
0.00
42.01
4.26
134
135
3.168193
CCGCTAAATAAACGGTTTGCTG
58.832
45.455
16.05
3.55
42.01
4.41
135
136
3.481112
CCGCTAAATAAACGGTTTGCT
57.519
42.857
16.05
0.86
42.01
3.91
142
143
1.063469
CCTGCCACCGCTAAATAAACG
59.937
52.381
0.00
0.00
35.36
3.60
143
144
2.096980
GTCCTGCCACCGCTAAATAAAC
59.903
50.000
0.00
0.00
35.36
2.01
144
145
2.361789
GTCCTGCCACCGCTAAATAAA
58.638
47.619
0.00
0.00
35.36
1.40
145
146
1.741055
CGTCCTGCCACCGCTAAATAA
60.741
52.381
0.00
0.00
35.36
1.40
146
147
0.179094
CGTCCTGCCACCGCTAAATA
60.179
55.000
0.00
0.00
35.36
1.40
147
148
1.449601
CGTCCTGCCACCGCTAAAT
60.450
57.895
0.00
0.00
35.36
1.40
148
149
2.047655
CGTCCTGCCACCGCTAAA
60.048
61.111
0.00
0.00
35.36
1.85
149
150
2.874664
AACGTCCTGCCACCGCTAA
61.875
57.895
0.00
0.00
35.36
3.09
150
151
3.307906
AACGTCCTGCCACCGCTA
61.308
61.111
0.00
0.00
35.36
4.26
151
152
4.988598
CAACGTCCTGCCACCGCT
62.989
66.667
0.00
0.00
35.36
5.52
152
153
3.869473
TACAACGTCCTGCCACCGC
62.869
63.158
0.00
0.00
0.00
5.68
153
154
0.881159
TTTACAACGTCCTGCCACCG
60.881
55.000
0.00
0.00
0.00
4.94
154
155
1.530323
ATTTACAACGTCCTGCCACC
58.470
50.000
0.00
0.00
0.00
4.61
155
156
2.093152
CGTATTTACAACGTCCTGCCAC
59.907
50.000
0.00
0.00
35.66
5.01
156
157
2.339418
CGTATTTACAACGTCCTGCCA
58.661
47.619
0.00
0.00
35.66
4.92
157
158
1.662122
CCGTATTTACAACGTCCTGCC
59.338
52.381
0.00
0.00
38.67
4.85
158
159
2.340337
ACCGTATTTACAACGTCCTGC
58.660
47.619
0.00
0.00
38.67
4.85
159
160
5.634859
AGTTTACCGTATTTACAACGTCCTG
59.365
40.000
0.00
0.00
38.67
3.86
160
161
5.783111
AGTTTACCGTATTTACAACGTCCT
58.217
37.500
0.00
0.00
38.67
3.85
161
162
6.145371
TGAAGTTTACCGTATTTACAACGTCC
59.855
38.462
0.00
0.00
38.67
4.79
162
163
7.104326
TGAAGTTTACCGTATTTACAACGTC
57.896
36.000
0.00
0.00
38.67
4.34
163
164
6.346838
GCTGAAGTTTACCGTATTTACAACGT
60.347
38.462
0.00
0.00
38.67
3.99
164
165
6.011277
GCTGAAGTTTACCGTATTTACAACG
58.989
40.000
0.00
0.00
40.01
4.10
165
166
7.125536
AGCTGAAGTTTACCGTATTTACAAC
57.874
36.000
0.00
0.00
0.00
3.32
166
167
7.733402
AAGCTGAAGTTTACCGTATTTACAA
57.267
32.000
0.00
0.00
0.00
2.41
167
168
7.733402
AAAGCTGAAGTTTACCGTATTTACA
57.267
32.000
0.00
0.00
0.00
2.41
168
169
7.747799
GGAAAAGCTGAAGTTTACCGTATTTAC
59.252
37.037
0.00
0.00
0.00
2.01
169
170
7.444792
TGGAAAAGCTGAAGTTTACCGTATTTA
59.555
33.333
0.00
0.00
0.00
1.40
170
171
6.263617
TGGAAAAGCTGAAGTTTACCGTATTT
59.736
34.615
0.00
0.00
0.00
1.40
171
172
5.766174
TGGAAAAGCTGAAGTTTACCGTATT
59.234
36.000
0.00
0.00
0.00
1.89
172
173
5.310451
TGGAAAAGCTGAAGTTTACCGTAT
58.690
37.500
0.00
0.00
0.00
3.06
173
174
4.706035
TGGAAAAGCTGAAGTTTACCGTA
58.294
39.130
0.00
0.00
0.00
4.02
174
175
3.547746
TGGAAAAGCTGAAGTTTACCGT
58.452
40.909
0.00
0.00
0.00
4.83
175
176
4.561735
TTGGAAAAGCTGAAGTTTACCG
57.438
40.909
0.00
0.00
0.00
4.02
176
177
5.154222
CGATTGGAAAAGCTGAAGTTTACC
58.846
41.667
0.00
0.00
0.00
2.85
177
178
5.154222
CCGATTGGAAAAGCTGAAGTTTAC
58.846
41.667
0.00
0.00
37.49
2.01
178
179
4.825085
ACCGATTGGAAAAGCTGAAGTTTA
59.175
37.500
5.81
0.00
39.21
2.01
179
180
3.636764
ACCGATTGGAAAAGCTGAAGTTT
59.363
39.130
5.81
0.00
39.21
2.66
180
181
3.004734
CACCGATTGGAAAAGCTGAAGTT
59.995
43.478
5.81
0.00
39.21
2.66
181
182
2.554032
CACCGATTGGAAAAGCTGAAGT
59.446
45.455
5.81
0.00
39.21
3.01
182
183
3.207474
CACCGATTGGAAAAGCTGAAG
57.793
47.619
5.81
0.00
39.21
3.02
194
195
2.046285
GGCCCAACTCCACCGATTG
61.046
63.158
0.00
0.00
0.00
2.67
195
196
1.789576
AAGGCCCAACTCCACCGATT
61.790
55.000
0.00
0.00
0.00
3.34
196
197
2.198304
GAAGGCCCAACTCCACCGAT
62.198
60.000
0.00
0.00
0.00
4.18
197
198
2.852075
AAGGCCCAACTCCACCGA
60.852
61.111
0.00
0.00
0.00
4.69
198
199
2.359975
GAAGGCCCAACTCCACCG
60.360
66.667
0.00
0.00
0.00
4.94
199
200
2.035783
GGAAGGCCCAACTCCACC
59.964
66.667
0.00
0.00
34.14
4.61
200
201
1.002011
GAGGAAGGCCCAACTCCAC
60.002
63.158
0.00
0.00
37.41
4.02
201
202
2.592993
CGAGGAAGGCCCAACTCCA
61.593
63.158
0.00
0.00
37.41
3.86
202
203
2.269241
CGAGGAAGGCCCAACTCC
59.731
66.667
0.00
0.04
37.41
3.85
203
204
2.436824
GCGAGGAAGGCCCAACTC
60.437
66.667
0.00
3.31
37.41
3.01
204
205
2.930562
AGCGAGGAAGGCCCAACT
60.931
61.111
0.00
0.00
37.41
3.16
205
206
2.436824
GAGCGAGGAAGGCCCAAC
60.437
66.667
0.00
0.00
37.41
3.77
206
207
3.717294
GGAGCGAGGAAGGCCCAA
61.717
66.667
0.00
0.00
37.41
4.12
208
209
4.168291
CTGGAGCGAGGAAGGCCC
62.168
72.222
0.00
0.00
33.31
5.80
209
210
1.977293
AATCTGGAGCGAGGAAGGCC
61.977
60.000
0.00
0.00
0.00
5.19
210
211
0.107459
AAATCTGGAGCGAGGAAGGC
60.107
55.000
0.00
0.00
0.00
4.35
211
212
2.409948
AAAATCTGGAGCGAGGAAGG
57.590
50.000
0.00
0.00
0.00
3.46
228
229
5.185249
AGCTGTAGTCGATCCTACTGAAAAA
59.815
40.000
18.34
0.00
38.46
1.94
229
230
4.705507
AGCTGTAGTCGATCCTACTGAAAA
59.294
41.667
18.34
0.00
38.46
2.29
230
231
4.270834
AGCTGTAGTCGATCCTACTGAAA
58.729
43.478
18.34
0.00
38.46
2.69
231
232
3.887352
AGCTGTAGTCGATCCTACTGAA
58.113
45.455
18.34
0.09
38.46
3.02
232
233
3.562343
AGCTGTAGTCGATCCTACTGA
57.438
47.619
18.34
0.65
38.46
3.41
233
234
4.355437
CAAAGCTGTAGTCGATCCTACTG
58.645
47.826
12.76
12.78
38.49
2.74
234
235
3.181485
GCAAAGCTGTAGTCGATCCTACT
60.181
47.826
12.76
5.84
38.49
2.57
235
236
3.117046
GCAAAGCTGTAGTCGATCCTAC
58.883
50.000
6.31
6.31
38.23
3.18
236
237
2.223502
CGCAAAGCTGTAGTCGATCCTA
60.224
50.000
0.00
0.00
0.00
2.94
237
238
1.469940
CGCAAAGCTGTAGTCGATCCT
60.470
52.381
0.00
0.00
0.00
3.24
238
239
0.924090
CGCAAAGCTGTAGTCGATCC
59.076
55.000
0.00
0.00
0.00
3.36
239
240
1.909376
TCGCAAAGCTGTAGTCGATC
58.091
50.000
0.00
0.00
0.00
3.69
240
241
2.263077
CTTCGCAAAGCTGTAGTCGAT
58.737
47.619
0.00
0.00
0.00
3.59
241
242
1.698165
CTTCGCAAAGCTGTAGTCGA
58.302
50.000
0.00
0.00
0.00
4.20
251
252
4.855596
GAAGCTGGCTTCGCAAAG
57.144
55.556
17.68
0.00
42.23
2.77
262
263
3.600388
ACGAAATAACCTCCAGAAGCTG
58.400
45.455
0.00
0.00
0.00
4.24
263
264
3.983044
ACGAAATAACCTCCAGAAGCT
57.017
42.857
0.00
0.00
0.00
3.74
264
265
3.062234
CGAACGAAATAACCTCCAGAAGC
59.938
47.826
0.00
0.00
0.00
3.86
265
266
3.617263
CCGAACGAAATAACCTCCAGAAG
59.383
47.826
0.00
0.00
0.00
2.85
266
267
3.592059
CCGAACGAAATAACCTCCAGAA
58.408
45.455
0.00
0.00
0.00
3.02
267
268
2.675889
GCCGAACGAAATAACCTCCAGA
60.676
50.000
0.00
0.00
0.00
3.86
268
269
1.664151
GCCGAACGAAATAACCTCCAG
59.336
52.381
0.00
0.00
0.00
3.86
269
270
1.276989
AGCCGAACGAAATAACCTCCA
59.723
47.619
0.00
0.00
0.00
3.86
270
271
1.931841
GAGCCGAACGAAATAACCTCC
59.068
52.381
0.00
0.00
0.00
4.30
271
272
2.889852
AGAGCCGAACGAAATAACCTC
58.110
47.619
0.00
0.00
0.00
3.85
272
273
3.329929
AAGAGCCGAACGAAATAACCT
57.670
42.857
0.00
0.00
0.00
3.50
273
274
5.048507
AGATAAGAGCCGAACGAAATAACC
58.951
41.667
0.00
0.00
0.00
2.85
274
275
5.556570
GCAGATAAGAGCCGAACGAAATAAC
60.557
44.000
0.00
0.00
0.00
1.89
275
276
4.506654
GCAGATAAGAGCCGAACGAAATAA
59.493
41.667
0.00
0.00
0.00
1.40
276
277
4.049186
GCAGATAAGAGCCGAACGAAATA
58.951
43.478
0.00
0.00
0.00
1.40
277
278
2.866762
GCAGATAAGAGCCGAACGAAAT
59.133
45.455
0.00
0.00
0.00
2.17
278
279
2.094182
AGCAGATAAGAGCCGAACGAAA
60.094
45.455
0.00
0.00
0.00
3.46
279
280
1.476891
AGCAGATAAGAGCCGAACGAA
59.523
47.619
0.00
0.00
0.00
3.85
280
281
1.065701
GAGCAGATAAGAGCCGAACGA
59.934
52.381
0.00
0.00
0.00
3.85
281
282
1.066303
AGAGCAGATAAGAGCCGAACG
59.934
52.381
0.00
0.00
0.00
3.95
282
283
2.880963
AGAGCAGATAAGAGCCGAAC
57.119
50.000
0.00
0.00
0.00
3.95
283
284
2.887783
CCTAGAGCAGATAAGAGCCGAA
59.112
50.000
0.00
0.00
0.00
4.30
284
285
2.106684
TCCTAGAGCAGATAAGAGCCGA
59.893
50.000
0.00
0.00
0.00
5.54
285
286
2.509569
TCCTAGAGCAGATAAGAGCCG
58.490
52.381
0.00
0.00
0.00
5.52
286
287
4.946478
TTTCCTAGAGCAGATAAGAGCC
57.054
45.455
0.00
0.00
0.00
4.70
287
288
6.202570
CACAATTTCCTAGAGCAGATAAGAGC
59.797
42.308
0.00
0.00
0.00
4.09
288
289
7.495901
TCACAATTTCCTAGAGCAGATAAGAG
58.504
38.462
0.00
0.00
0.00
2.85
289
290
7.423844
TCACAATTTCCTAGAGCAGATAAGA
57.576
36.000
0.00
0.00
0.00
2.10
290
291
7.768120
ACTTCACAATTTCCTAGAGCAGATAAG
59.232
37.037
0.00
0.00
0.00
1.73
291
292
7.550551
CACTTCACAATTTCCTAGAGCAGATAA
59.449
37.037
0.00
0.00
0.00
1.75
292
293
7.044181
CACTTCACAATTTCCTAGAGCAGATA
58.956
38.462
0.00
0.00
0.00
1.98
293
294
5.879223
CACTTCACAATTTCCTAGAGCAGAT
59.121
40.000
0.00
0.00
0.00
2.90
294
295
5.221722
ACACTTCACAATTTCCTAGAGCAGA
60.222
40.000
0.00
0.00
0.00
4.26
295
296
4.999950
ACACTTCACAATTTCCTAGAGCAG
59.000
41.667
0.00
0.00
0.00
4.24
296
297
4.756642
CACACTTCACAATTTCCTAGAGCA
59.243
41.667
0.00
0.00
0.00
4.26
297
298
4.154918
CCACACTTCACAATTTCCTAGAGC
59.845
45.833
0.00
0.00
0.00
4.09
298
299
5.551233
TCCACACTTCACAATTTCCTAGAG
58.449
41.667
0.00
0.00
0.00
2.43
299
300
5.551233
CTCCACACTTCACAATTTCCTAGA
58.449
41.667
0.00
0.00
0.00
2.43
300
301
4.154918
GCTCCACACTTCACAATTTCCTAG
59.845
45.833
0.00
0.00
0.00
3.02
301
302
4.072131
GCTCCACACTTCACAATTTCCTA
58.928
43.478
0.00
0.00
0.00
2.94
302
303
2.887152
GCTCCACACTTCACAATTTCCT
59.113
45.455
0.00
0.00
0.00
3.36
303
304
2.350772
CGCTCCACACTTCACAATTTCC
60.351
50.000
0.00
0.00
0.00
3.13
304
305
2.350772
CCGCTCCACACTTCACAATTTC
60.351
50.000
0.00
0.00
0.00
2.17
305
306
1.608590
CCGCTCCACACTTCACAATTT
59.391
47.619
0.00
0.00
0.00
1.82
306
307
1.238439
CCGCTCCACACTTCACAATT
58.762
50.000
0.00
0.00
0.00
2.32
307
308
0.606401
CCCGCTCCACACTTCACAAT
60.606
55.000
0.00
0.00
0.00
2.71
308
309
1.227823
CCCGCTCCACACTTCACAA
60.228
57.895
0.00
0.00
0.00
3.33
309
310
2.099652
CTCCCGCTCCACACTTCACA
62.100
60.000
0.00
0.00
0.00
3.58
310
311
1.374758
CTCCCGCTCCACACTTCAC
60.375
63.158
0.00
0.00
0.00
3.18
311
312
2.583441
CCTCCCGCTCCACACTTCA
61.583
63.158
0.00
0.00
0.00
3.02
312
313
2.232298
CTCCTCCCGCTCCACACTTC
62.232
65.000
0.00
0.00
0.00
3.01
313
314
2.203788
TCCTCCCGCTCCACACTT
60.204
61.111
0.00
0.00
0.00
3.16
314
315
2.522198
ATCTCCTCCCGCTCCACACT
62.522
60.000
0.00
0.00
0.00
3.55
315
316
2.022240
GATCTCCTCCCGCTCCACAC
62.022
65.000
0.00
0.00
0.00
3.82
316
317
1.758514
GATCTCCTCCCGCTCCACA
60.759
63.158
0.00
0.00
0.00
4.17
317
318
1.743321
CTGATCTCCTCCCGCTCCAC
61.743
65.000
0.00
0.00
0.00
4.02
318
319
1.456518
CTGATCTCCTCCCGCTCCA
60.457
63.158
0.00
0.00
0.00
3.86
319
320
0.757188
TTCTGATCTCCTCCCGCTCC
60.757
60.000
0.00
0.00
0.00
4.70
320
321
0.387565
GTTCTGATCTCCTCCCGCTC
59.612
60.000
0.00
0.00
0.00
5.03
321
322
0.324738
TGTTCTGATCTCCTCCCGCT
60.325
55.000
0.00
0.00
0.00
5.52
322
323
0.179097
GTGTTCTGATCTCCTCCCGC
60.179
60.000
0.00
0.00
0.00
6.13
323
324
0.101399
CGTGTTCTGATCTCCTCCCG
59.899
60.000
0.00
0.00
0.00
5.14
324
325
0.179097
GCGTGTTCTGATCTCCTCCC
60.179
60.000
0.00
0.00
0.00
4.30
325
326
0.179097
GGCGTGTTCTGATCTCCTCC
60.179
60.000
0.00
0.00
0.00
4.30
326
327
0.179097
GGGCGTGTTCTGATCTCCTC
60.179
60.000
0.00
0.00
0.00
3.71
327
328
0.616111
AGGGCGTGTTCTGATCTCCT
60.616
55.000
0.00
0.00
0.00
3.69
328
329
0.460987
CAGGGCGTGTTCTGATCTCC
60.461
60.000
0.00
0.00
33.11
3.71
329
330
0.532573
TCAGGGCGTGTTCTGATCTC
59.467
55.000
7.12
0.00
35.37
2.75
330
331
0.976641
TTCAGGGCGTGTTCTGATCT
59.023
50.000
7.12
0.00
39.42
2.75
331
332
1.464997
GTTTCAGGGCGTGTTCTGATC
59.535
52.381
7.12
0.00
39.42
2.92
332
333
1.523758
GTTTCAGGGCGTGTTCTGAT
58.476
50.000
7.12
0.00
39.42
2.90
333
334
0.534203
GGTTTCAGGGCGTGTTCTGA
60.534
55.000
7.12
0.00
38.14
3.27
334
335
1.515521
GGGTTTCAGGGCGTGTTCTG
61.516
60.000
7.12
0.00
0.00
3.02
335
336
1.228154
GGGTTTCAGGGCGTGTTCT
60.228
57.895
7.12
0.00
0.00
3.01
336
337
0.035739
TAGGGTTTCAGGGCGTGTTC
59.964
55.000
7.12
0.00
0.00
3.18
337
338
0.696501
ATAGGGTTTCAGGGCGTGTT
59.303
50.000
7.12
0.00
0.00
3.32
338
339
0.696501
AATAGGGTTTCAGGGCGTGT
59.303
50.000
7.12
0.00
0.00
4.49
339
340
2.093128
AGTAATAGGGTTTCAGGGCGTG
60.093
50.000
0.00
0.00
0.00
5.34
340
341
2.193993
AGTAATAGGGTTTCAGGGCGT
58.806
47.619
0.00
0.00
0.00
5.68
341
342
3.277142
AAGTAATAGGGTTTCAGGGCG
57.723
47.619
0.00
0.00
0.00
6.13
342
343
3.699538
CCAAAGTAATAGGGTTTCAGGGC
59.300
47.826
0.00
0.00
0.00
5.19
343
344
5.187621
TCCAAAGTAATAGGGTTTCAGGG
57.812
43.478
0.00
0.00
0.00
4.45
344
345
8.817092
TTATTCCAAAGTAATAGGGTTTCAGG
57.183
34.615
0.00
0.00
0.00
3.86
359
360
5.700832
GGGGCAAAAGAGTTTTATTCCAAAG
59.299
40.000
0.00
0.00
0.00
2.77
388
389
6.490721
TGTTAATGTCGGACTTTGGGTATTTT
59.509
34.615
16.82
0.00
0.00
1.82
390
391
5.562635
TGTTAATGTCGGACTTTGGGTATT
58.437
37.500
16.82
6.27
0.00
1.89
405
406
9.793252
GTGCATCTTATTGAGAAATGTTAATGT
57.207
29.630
0.00
0.00
38.06
2.71
422
423
3.119531
CCAAATCTTTGCGGTGCATCTTA
60.120
43.478
0.00
0.00
38.76
2.10
604
610
2.626780
GGGGGAAGCGTTTCTGTGC
61.627
63.158
11.94
0.00
33.68
4.57
652
659
1.004862
TGGTTGATTGGGCGTTATCCA
59.995
47.619
0.00
0.00
0.00
3.41
724
731
1.069258
GTTCCGGATAGGGCGAAGG
59.931
63.158
4.15
0.00
41.52
3.46
728
735
4.963428
GGCGTTCCGGATAGGGCG
62.963
72.222
4.15
6.75
41.52
6.13
729
736
4.620937
GGGCGTTCCGGATAGGGC
62.621
72.222
4.15
13.90
41.52
5.19
752
759
2.119484
ATTCGGTTGGGTCGAGGCAA
62.119
55.000
0.00
0.00
37.93
4.52
753
760
1.259142
TATTCGGTTGGGTCGAGGCA
61.259
55.000
0.00
0.00
37.93
4.75
767
774
2.792749
GAATGCCGTTTTGGGTATTCG
58.207
47.619
6.65
0.00
45.13
3.34
864
872
0.178533
ACGAACCAACAAACTCCGGA
59.821
50.000
2.93
2.93
0.00
5.14
868
876
3.547413
GCACCTAACGAACCAACAAACTC
60.547
47.826
0.00
0.00
0.00
3.01
921
929
1.530891
CTCCTCCGATCCCCGCTTA
60.531
63.158
0.00
0.00
36.84
3.09
1012
1020
1.662438
GAGCTGGAGACGTGGGAGAG
61.662
65.000
0.00
0.00
0.00
3.20
1013
1021
1.679305
GAGCTGGAGACGTGGGAGA
60.679
63.158
0.00
0.00
0.00
3.71
1017
1025
2.716017
GGAGGAGCTGGAGACGTGG
61.716
68.421
0.00
0.00
0.00
4.94
1018
1026
1.662438
GAGGAGGAGCTGGAGACGTG
61.662
65.000
0.00
0.00
0.00
4.49
1019
1027
1.379309
GAGGAGGAGCTGGAGACGT
60.379
63.158
0.00
0.00
0.00
4.34
1066
1074
3.024356
AGGAGGGGAGAGCGGAGA
61.024
66.667
0.00
0.00
0.00
3.71
1070
1078
3.522731
CACGAGGAGGGGAGAGCG
61.523
72.222
0.00
0.00
0.00
5.03
1072
1080
3.522731
CGCACGAGGAGGGGAGAG
61.523
72.222
0.00
0.00
0.00
3.20
1162
1170
3.250323
CATCAGCCGCGAGTCGTG
61.250
66.667
19.03
19.03
37.10
4.35
1365
1373
1.299648
CCACGGCATGAGGAGGAAA
59.700
57.895
0.00
0.00
0.00
3.13
1461
1469
2.683933
TCCTTGGAGGAGGACGGC
60.684
66.667
0.00
0.00
40.06
5.68
1471
1479
0.744874
CGTCGCTCCTTATCCTTGGA
59.255
55.000
0.00
0.00
0.00
3.53
1472
1480
0.249489
CCGTCGCTCCTTATCCTTGG
60.249
60.000
0.00
0.00
0.00
3.61
1473
1481
0.876342
GCCGTCGCTCCTTATCCTTG
60.876
60.000
0.00
0.00
0.00
3.61
1474
1482
1.043673
AGCCGTCGCTCCTTATCCTT
61.044
55.000
0.00
0.00
43.95
3.36
1475
1483
1.455959
AGCCGTCGCTCCTTATCCT
60.456
57.895
0.00
0.00
43.95
3.24
1476
1484
1.300233
CAGCCGTCGCTCCTTATCC
60.300
63.158
0.00
0.00
43.95
2.59
1477
1485
1.951631
GCAGCCGTCGCTCCTTATC
60.952
63.158
0.00
0.00
43.95
1.75
1478
1486
2.107141
GCAGCCGTCGCTCCTTAT
59.893
61.111
0.00
0.00
43.95
1.73
1479
1487
3.068691
AGCAGCCGTCGCTCCTTA
61.069
61.111
0.00
0.00
43.95
2.69
1598
1609
5.045869
TCCTAATCCCGCCCTAATTGATTAG
60.046
44.000
9.51
9.51
41.98
1.73
1603
1614
3.347216
CATCCTAATCCCGCCCTAATTG
58.653
50.000
0.00
0.00
0.00
2.32
1645
1656
0.385390
ACAACAGCAAAAGGGAAGCG
59.615
50.000
0.00
0.00
0.00
4.68
1722
1736
9.089601
TCGACACGAAACAATAACACATATAAT
57.910
29.630
0.00
0.00
31.06
1.28
1755
1770
4.444024
CGTTGCCATCCGTGCACG
62.444
66.667
31.77
31.77
38.72
5.34
1784
1800
0.318441
TTCTGGTCTGACGAAGCAGG
59.682
55.000
10.52
0.00
41.45
4.85
1818
1849
1.333308
AGATCGACGCAGACTGAGATG
59.667
52.381
13.56
4.81
0.00
2.90
1824
1855
1.366679
TTACGAGATCGACGCAGACT
58.633
50.000
9.58
0.00
43.02
3.24
1924
1964
2.444421
GACGGACCGGATAGGATATGT
58.556
52.381
20.00
0.00
45.00
2.29
1926
1966
2.140839
GGACGGACCGGATAGGATAT
57.859
55.000
20.00
0.00
45.00
1.63
1939
1979
6.099341
GTCCTTTTTATACTAAACGGACGGA
58.901
40.000
8.85
0.00
42.68
4.69
1950
1991
4.643334
GGCCCGATTTGTCCTTTTTATACT
59.357
41.667
0.00
0.00
0.00
2.12
1952
1993
3.628487
CGGCCCGATTTGTCCTTTTTATA
59.372
43.478
0.00
0.00
0.00
0.98
1959
2000
4.796495
GGCGGCCCGATTTGTCCT
62.796
66.667
7.68
0.00
0.00
3.85
1982
2023
1.265236
AAAATCCATTTGCTCCCGCA
58.735
45.000
0.00
0.00
46.24
5.69
2037
2078
2.010582
AAAAGCGGCGCAAACTTGGA
62.011
50.000
35.02
0.00
0.00
3.53
2118
2160
4.293648
CGTCCTGTGCCACCGACA
62.294
66.667
11.35
0.00
0.00
4.35
2141
2183
1.450642
GGAGGGGGCGGATAGAAAC
59.549
63.158
0.00
0.00
0.00
2.78
2187
2230
4.398319
GAACAGTGGGAAGAATGGAGAAA
58.602
43.478
0.00
0.00
0.00
2.52
2195
2238
1.064825
GAGGGGAACAGTGGGAAGAA
58.935
55.000
0.00
0.00
0.00
2.52
2332
2382
2.508928
GATCCGCCCCAAATCCGA
59.491
61.111
0.00
0.00
0.00
4.55
2449
2506
3.567797
GTGCAGATTCGAGCGGCC
61.568
66.667
9.27
0.00
0.00
6.13
2477
2534
0.736636
ATTCGTGTATCTGCCGACGA
59.263
50.000
0.00
0.00
38.97
4.20
2480
2537
0.821517
ACCATTCGTGTATCTGCCGA
59.178
50.000
0.00
0.00
0.00
5.54
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.