Multiple sequence alignment - TraesCS3B01G468100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G468100 | chr3B | 100.000 | 5315 | 0 | 0 | 1 | 5315 | 712568475 | 712563161 | 0.000000e+00 | 9816 |
1 | TraesCS3B01G468100 | chr3B | 92.391 | 92 | 5 | 2 | 2688 | 2778 | 48667301 | 48667391 | 4.320000e-26 | 130 |
2 | TraesCS3B01G468100 | chr3A | 93.520 | 2716 | 130 | 23 | 1 | 2700 | 673443708 | 673441023 | 0.000000e+00 | 3999 |
3 | TraesCS3B01G468100 | chr3A | 96.759 | 2067 | 57 | 5 | 2777 | 4836 | 673441038 | 673438975 | 0.000000e+00 | 3437 |
4 | TraesCS3B01G468100 | chr3A | 85.990 | 414 | 22 | 11 | 4835 | 5214 | 673438871 | 673438460 | 1.380000e-110 | 411 |
5 | TraesCS3B01G468100 | chr3A | 98.734 | 79 | 1 | 0 | 2700 | 2778 | 527824798 | 527824720 | 2.000000e-29 | 141 |
6 | TraesCS3B01G468100 | chr3A | 96.429 | 84 | 3 | 0 | 2700 | 2783 | 698350700 | 698350617 | 7.180000e-29 | 139 |
7 | TraesCS3B01G468100 | chr3A | 92.391 | 92 | 5 | 2 | 2688 | 2778 | 301131272 | 301131362 | 4.320000e-26 | 130 |
8 | TraesCS3B01G468100 | chr3D | 92.879 | 1671 | 70 | 15 | 1 | 1654 | 537913302 | 537911664 | 0.000000e+00 | 2381 |
9 | TraesCS3B01G468100 | chr3D | 88.858 | 1813 | 147 | 30 | 2777 | 4554 | 537910691 | 537908899 | 0.000000e+00 | 2178 |
10 | TraesCS3B01G468100 | chr3D | 92.829 | 1018 | 48 | 9 | 1684 | 2700 | 537911669 | 537910676 | 0.000000e+00 | 1452 |
11 | TraesCS3B01G468100 | chr3D | 91.599 | 369 | 25 | 6 | 4855 | 5220 | 537908138 | 537907773 | 6.140000e-139 | 505 |
12 | TraesCS3B01G468100 | chr3D | 90.347 | 259 | 14 | 4 | 4586 | 4836 | 537908516 | 537908261 | 3.970000e-86 | 329 |
13 | TraesCS3B01G468100 | chr3D | 95.918 | 98 | 3 | 1 | 5218 | 5315 | 537907655 | 537907559 | 1.980000e-34 | 158 |
14 | TraesCS3B01G468100 | chr6B | 98.734 | 79 | 1 | 0 | 2700 | 2778 | 227274613 | 227274691 | 2.000000e-29 | 141 |
15 | TraesCS3B01G468100 | chr6B | 93.407 | 91 | 5 | 1 | 2700 | 2790 | 287471851 | 287471940 | 3.340000e-27 | 134 |
16 | TraesCS3B01G468100 | chr4D | 98.734 | 79 | 1 | 0 | 2700 | 2778 | 313574280 | 313574202 | 2.000000e-29 | 141 |
17 | TraesCS3B01G468100 | chr4A | 97.500 | 80 | 2 | 0 | 2700 | 2779 | 58113512 | 58113433 | 2.580000e-28 | 137 |
18 | TraesCS3B01G468100 | chrUn | 92.391 | 92 | 5 | 2 | 2700 | 2789 | 340618267 | 340618176 | 4.320000e-26 | 130 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G468100 | chr3B | 712563161 | 712568475 | 5314 | True | 9816.000000 | 9816 | 100.000000 | 1 | 5315 | 1 | chr3B.!!$R1 | 5314 |
1 | TraesCS3B01G468100 | chr3A | 673438460 | 673443708 | 5248 | True | 2615.666667 | 3999 | 92.089667 | 1 | 5214 | 3 | chr3A.!!$R3 | 5213 |
2 | TraesCS3B01G468100 | chr3D | 537907559 | 537913302 | 5743 | True | 1167.166667 | 2381 | 92.071667 | 1 | 5315 | 6 | chr3D.!!$R1 | 5314 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
352 | 364 | 0.961019 | TGGCTTTTCATGGTCAGTGC | 59.039 | 50.0 | 0.0 | 0.0 | 0.0 | 4.40 | F |
2095 | 2128 | 0.037590 | TTGCTCCCACCATGTACCAC | 59.962 | 55.0 | 0.0 | 0.0 | 0.0 | 4.16 | F |
2749 | 2785 | 0.187361 | TAGCCTGCCCCAACTTGTTT | 59.813 | 50.0 | 0.0 | 0.0 | 0.0 | 2.83 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2271 | 2304 | 0.253610 | ACCACGGTGTTTTGACCTGA | 59.746 | 50.000 | 7.45 | 0.0 | 33.35 | 3.86 | R |
2959 | 2995 | 1.227438 | CCGTGTCAAAGGTGTCGGT | 60.227 | 57.895 | 0.00 | 0.0 | 33.51 | 4.69 | R |
4331 | 4379 | 0.315251 | CACTTCCGCTCACAGACAGA | 59.685 | 55.000 | 0.00 | 0.0 | 0.00 | 3.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
135 | 139 | 2.952978 | AGACGTTTTTGTAATGTGGGCA | 59.047 | 40.909 | 0.00 | 0.00 | 0.00 | 5.36 |
136 | 140 | 3.572255 | AGACGTTTTTGTAATGTGGGCAT | 59.428 | 39.130 | 0.00 | 0.00 | 36.80 | 4.40 |
137 | 141 | 3.908213 | ACGTTTTTGTAATGTGGGCATC | 58.092 | 40.909 | 0.00 | 0.00 | 33.50 | 3.91 |
163 | 167 | 5.098893 | TCGCCAAAATATTTGTCCATTTCG | 58.901 | 37.500 | 0.39 | 0.00 | 0.00 | 3.46 |
287 | 299 | 7.094205 | GGGTATCTGGTTGCCATATAAATCAAG | 60.094 | 40.741 | 0.00 | 0.00 | 30.82 | 3.02 |
335 | 347 | 5.170748 | GTTCCAAACTAGATGCCATTTTGG | 58.829 | 41.667 | 10.93 | 10.93 | 45.11 | 3.28 |
348 | 360 | 4.005487 | CCATTTTGGCTTTTCATGGTCA | 57.995 | 40.909 | 0.00 | 0.00 | 31.33 | 4.02 |
349 | 361 | 3.998341 | CCATTTTGGCTTTTCATGGTCAG | 59.002 | 43.478 | 0.00 | 0.00 | 31.33 | 3.51 |
350 | 362 | 4.503643 | CCATTTTGGCTTTTCATGGTCAGT | 60.504 | 41.667 | 0.00 | 0.00 | 31.33 | 3.41 |
352 | 364 | 0.961019 | TGGCTTTTCATGGTCAGTGC | 59.039 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
354 | 366 | 2.224744 | TGGCTTTTCATGGTCAGTGCTA | 60.225 | 45.455 | 0.00 | 0.00 | 0.00 | 3.49 |
509 | 531 | 7.969536 | TTCAAAGATAGAGAAGTTTGACTGG | 57.030 | 36.000 | 0.00 | 0.00 | 38.35 | 4.00 |
639 | 669 | 6.721704 | ACAGAACTAGACAGATATGATGCA | 57.278 | 37.500 | 0.00 | 0.00 | 0.00 | 3.96 |
680 | 710 | 5.550403 | TGGTTTTACCTCTCCTTATTGTCCT | 59.450 | 40.000 | 0.00 | 0.00 | 39.58 | 3.85 |
685 | 715 | 5.793030 | ACCTCTCCTTATTGTCCTATTCG | 57.207 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
742 | 772 | 4.721776 | TGCCCTACACTCCTTCATAGAATT | 59.278 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
882 | 913 | 1.588139 | GAAGGCATTGCGCATCTGC | 60.588 | 57.895 | 27.98 | 27.98 | 45.17 | 4.26 |
1151 | 1182 | 0.962356 | GTCCACATCCACAGGCCAAG | 60.962 | 60.000 | 5.01 | 0.00 | 0.00 | 3.61 |
1323 | 1356 | 1.009829 | CGTATTGGGAGCTTCAGTGC | 58.990 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1331 | 1364 | 0.888285 | GAGCTTCAGTGCCAGCAAGT | 60.888 | 55.000 | 14.51 | 0.00 | 38.61 | 3.16 |
1355 | 1388 | 8.807118 | AGTAAGTTGACAGAAGATCATGTTAGA | 58.193 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
1357 | 1390 | 7.473735 | AGTTGACAGAAGATCATGTTAGAGA | 57.526 | 36.000 | 0.00 | 0.00 | 0.00 | 3.10 |
1375 | 1408 | 3.953612 | AGAGAGCACAGGATAAGTGAGAG | 59.046 | 47.826 | 0.00 | 0.00 | 39.30 | 3.20 |
1380 | 1413 | 4.284490 | AGCACAGGATAAGTGAGAGAAACA | 59.716 | 41.667 | 0.00 | 0.00 | 39.30 | 2.83 |
1385 | 1418 | 7.224362 | CACAGGATAAGTGAGAGAAACATGATC | 59.776 | 40.741 | 0.00 | 0.00 | 39.30 | 2.92 |
1398 | 1431 | 7.973388 | AGAGAAACATGATCGAGAAGAACTTAG | 59.027 | 37.037 | 0.00 | 0.00 | 0.00 | 2.18 |
1403 | 1436 | 6.378564 | ACATGATCGAGAAGAACTTAGAGGAA | 59.621 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
1412 | 1445 | 4.260170 | AGAACTTAGAGGAATGCTTGCAG | 58.740 | 43.478 | 0.87 | 0.00 | 0.00 | 4.41 |
1452 | 1485 | 5.545658 | TGAAACTGAAATGATTAGTCCGC | 57.454 | 39.130 | 0.00 | 0.00 | 0.00 | 5.54 |
1453 | 1486 | 5.000591 | TGAAACTGAAATGATTAGTCCGCA | 58.999 | 37.500 | 0.00 | 0.00 | 0.00 | 5.69 |
1457 | 1490 | 3.198068 | TGAAATGATTAGTCCGCAGCTC | 58.802 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
1480 | 1513 | 8.397906 | GCTCTGTTCTTTTGTATACAATGCATA | 58.602 | 33.333 | 18.69 | 0.98 | 35.55 | 3.14 |
1530 | 1563 | 8.347004 | TGATATTGTGCATTTCTTTTAGGTCA | 57.653 | 30.769 | 0.00 | 0.00 | 0.00 | 4.02 |
1622 | 1655 | 2.004733 | GTTACCACACTCGTTATGGGC | 58.995 | 52.381 | 0.00 | 0.00 | 37.86 | 5.36 |
1666 | 1699 | 5.514500 | ACTTACATATGTTTCCTGGGTGT | 57.486 | 39.130 | 14.77 | 0.00 | 0.00 | 4.16 |
1667 | 1700 | 5.497474 | ACTTACATATGTTTCCTGGGTGTC | 58.503 | 41.667 | 14.77 | 0.00 | 0.00 | 3.67 |
1691 | 1724 | 1.095228 | GCAGCCTGGCGCAGTATTAA | 61.095 | 55.000 | 23.79 | 0.00 | 41.38 | 1.40 |
1692 | 1725 | 1.378531 | CAGCCTGGCGCAGTATTAAA | 58.621 | 50.000 | 13.96 | 0.00 | 41.38 | 1.52 |
1700 | 1733 | 3.021355 | GCGCAGTATTAAATATCGCCG | 57.979 | 47.619 | 0.30 | 0.00 | 35.71 | 6.46 |
1707 | 1740 | 6.347079 | GCAGTATTAAATATCGCCGCAACTTA | 60.347 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
1714 | 1747 | 1.003851 | TCGCCGCAACTTACTAATGC | 58.996 | 50.000 | 0.00 | 0.00 | 36.74 | 3.56 |
1824 | 1857 | 8.777413 | GCTTGTGCAATATTCTGTATCTTCATA | 58.223 | 33.333 | 0.00 | 0.00 | 39.41 | 2.15 |
1841 | 1874 | 4.963276 | TCATAAGGGAATTCTTGTTGCG | 57.037 | 40.909 | 5.23 | 0.00 | 0.00 | 4.85 |
1885 | 1918 | 6.366877 | CCTTAATCAACCTTGCATGTTCTTTG | 59.633 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
1888 | 1921 | 2.364970 | CAACCTTGCATGTTCTTTGGGA | 59.635 | 45.455 | 0.00 | 0.00 | 0.00 | 4.37 |
1890 | 1923 | 1.547372 | CCTTGCATGTTCTTTGGGAGG | 59.453 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
1908 | 1941 | 6.303839 | TGGGAGGTTATATTTTAGACCATGC | 58.696 | 40.000 | 0.00 | 0.00 | 34.60 | 4.06 |
1913 | 1946 | 8.034313 | AGGTTATATTTTAGACCATGCAGAGA | 57.966 | 34.615 | 0.00 | 0.00 | 34.60 | 3.10 |
1950 | 1983 | 9.035607 | CAATGCATTAAGATAGTAAACGAGTCT | 57.964 | 33.333 | 12.53 | 0.00 | 0.00 | 3.24 |
1955 | 1988 | 9.569167 | CATTAAGATAGTAAACGAGTCTGAACA | 57.431 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1976 | 2009 | 1.593265 | CCAAGAATGGCCAAGCACC | 59.407 | 57.895 | 10.96 | 0.00 | 40.58 | 5.01 |
2014 | 2047 | 7.037438 | ACGACTAAAGAAACAGAAACTGTACA | 58.963 | 34.615 | 4.84 | 0.00 | 44.62 | 2.90 |
2015 | 2048 | 7.546667 | ACGACTAAAGAAACAGAAACTGTACAA | 59.453 | 33.333 | 4.84 | 0.00 | 44.62 | 2.41 |
2016 | 2049 | 8.548721 | CGACTAAAGAAACAGAAACTGTACAAT | 58.451 | 33.333 | 4.84 | 0.00 | 44.62 | 2.71 |
2017 | 2050 | 9.651718 | GACTAAAGAAACAGAAACTGTACAATG | 57.348 | 33.333 | 4.84 | 0.00 | 44.62 | 2.82 |
2018 | 2051 | 8.129211 | ACTAAAGAAACAGAAACTGTACAATGC | 58.871 | 33.333 | 4.84 | 0.00 | 44.62 | 3.56 |
2019 | 2052 | 6.699575 | AAGAAACAGAAACTGTACAATGCT | 57.300 | 33.333 | 4.84 | 0.00 | 44.62 | 3.79 |
2020 | 2053 | 6.064846 | AGAAACAGAAACTGTACAATGCTG | 57.935 | 37.500 | 12.68 | 12.68 | 44.62 | 4.41 |
2021 | 2054 | 5.590259 | AGAAACAGAAACTGTACAATGCTGT | 59.410 | 36.000 | 13.74 | 13.74 | 44.62 | 4.40 |
2022 | 2055 | 6.765989 | AGAAACAGAAACTGTACAATGCTGTA | 59.234 | 34.615 | 17.97 | 0.00 | 44.62 | 2.74 |
2074 | 2107 | 1.308998 | CCAAAACTCGCAACAGACCT | 58.691 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2095 | 2128 | 0.037590 | TTGCTCCCACCATGTACCAC | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2101 | 2134 | 1.547675 | CCCACCATGTACCACAGCTTT | 60.548 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
2194 | 2227 | 2.087646 | GTCCTTCCAGATGAACCAAGC | 58.912 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
2195 | 2228 | 1.988107 | TCCTTCCAGATGAACCAAGCT | 59.012 | 47.619 | 0.00 | 0.00 | 0.00 | 3.74 |
2207 | 2240 | 6.948309 | AGATGAACCAAGCTACCAAAATAGTT | 59.052 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2251 | 2284 | 1.962807 | CATTTTGGTGAAGGCCTGACA | 59.037 | 47.619 | 5.69 | 7.53 | 0.00 | 3.58 |
2271 | 2304 | 1.985473 | TGCAATGCAGAAGACCAAGT | 58.015 | 45.000 | 2.72 | 0.00 | 33.32 | 3.16 |
2292 | 2325 | 1.871039 | CAGGTCAAAACACCGTGGTAG | 59.129 | 52.381 | 3.03 | 0.00 | 41.90 | 3.18 |
2293 | 2326 | 1.764134 | AGGTCAAAACACCGTGGTAGA | 59.236 | 47.619 | 3.03 | 0.00 | 41.90 | 2.59 |
2294 | 2327 | 2.370849 | AGGTCAAAACACCGTGGTAGAT | 59.629 | 45.455 | 3.03 | 0.00 | 41.90 | 1.98 |
2295 | 2328 | 2.740447 | GGTCAAAACACCGTGGTAGATC | 59.260 | 50.000 | 3.03 | 0.00 | 0.00 | 2.75 |
2296 | 2329 | 2.740447 | GTCAAAACACCGTGGTAGATCC | 59.260 | 50.000 | 3.03 | 0.00 | 0.00 | 3.36 |
2297 | 2330 | 1.730064 | CAAAACACCGTGGTAGATCCG | 59.270 | 52.381 | 3.03 | 0.00 | 39.52 | 4.18 |
2298 | 2331 | 0.971386 | AAACACCGTGGTAGATCCGT | 59.029 | 50.000 | 3.03 | 0.00 | 39.52 | 4.69 |
2299 | 2332 | 1.838112 | AACACCGTGGTAGATCCGTA | 58.162 | 50.000 | 3.03 | 0.00 | 39.52 | 4.02 |
2304 | 2337 | 2.228059 | CCGTGGTAGATCCGTAGATGT | 58.772 | 52.381 | 0.00 | 0.00 | 39.52 | 3.06 |
2311 | 2344 | 4.321082 | GGTAGATCCGTAGATGTTACTGCC | 60.321 | 50.000 | 0.00 | 0.00 | 30.90 | 4.85 |
2407 | 2440 | 5.300792 | CCTTTTGGTACCACTTCAAGCTTTA | 59.699 | 40.000 | 16.04 | 0.00 | 34.07 | 1.85 |
2409 | 2442 | 6.777213 | TTTGGTACCACTTCAAGCTTTAAA | 57.223 | 33.333 | 16.04 | 0.00 | 0.00 | 1.52 |
2438 | 2471 | 2.430465 | CTTGCCGGCATATATTCTGCT | 58.570 | 47.619 | 33.25 | 0.00 | 39.60 | 4.24 |
2479 | 2513 | 6.743575 | ATAAGTGCAGTTCCAGTAATCAAC | 57.256 | 37.500 | 10.78 | 0.00 | 0.00 | 3.18 |
2484 | 2518 | 3.758554 | GCAGTTCCAGTAATCAACCACAT | 59.241 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
2561 | 2595 | 4.944317 | TCCATTGTTTTATCACGTGGCATA | 59.056 | 37.500 | 17.00 | 4.16 | 0.00 | 3.14 |
2562 | 2596 | 5.592282 | TCCATTGTTTTATCACGTGGCATAT | 59.408 | 36.000 | 17.00 | 4.06 | 0.00 | 1.78 |
2643 | 2678 | 5.964958 | TTTCCTGCCAGAGTAAAAGATTG | 57.035 | 39.130 | 0.00 | 0.00 | 0.00 | 2.67 |
2696 | 2732 | 5.902613 | ATTGTTACCCTGACATGACAATG | 57.097 | 39.130 | 0.00 | 0.00 | 36.63 | 2.82 |
2706 | 2742 | 3.624326 | ACATGACAATGTTGTTGGTCG | 57.376 | 42.857 | 0.00 | 0.00 | 44.94 | 4.79 |
2707 | 2743 | 2.287547 | ACATGACAATGTTGTTGGTCGC | 60.288 | 45.455 | 0.00 | 0.00 | 44.94 | 5.19 |
2708 | 2744 | 0.306228 | TGACAATGTTGTTGGTCGCG | 59.694 | 50.000 | 0.00 | 0.00 | 42.43 | 5.87 |
2709 | 2745 | 0.584396 | GACAATGTTGTTGGTCGCGA | 59.416 | 50.000 | 3.71 | 3.71 | 42.43 | 5.87 |
2710 | 2746 | 0.586319 | ACAATGTTGTTGGTCGCGAG | 59.414 | 50.000 | 10.24 | 0.00 | 38.47 | 5.03 |
2711 | 2747 | 0.865111 | CAATGTTGTTGGTCGCGAGA | 59.135 | 50.000 | 10.24 | 0.00 | 38.16 | 4.04 |
2712 | 2748 | 1.464608 | CAATGTTGTTGGTCGCGAGAT | 59.535 | 47.619 | 10.24 | 0.00 | 45.19 | 2.75 |
2713 | 2749 | 1.359848 | ATGTTGTTGGTCGCGAGATC | 58.640 | 50.000 | 10.24 | 2.63 | 45.19 | 2.75 |
2714 | 2750 | 0.317160 | TGTTGTTGGTCGCGAGATCT | 59.683 | 50.000 | 10.24 | 0.00 | 43.23 | 2.75 |
2715 | 2751 | 1.270094 | TGTTGTTGGTCGCGAGATCTT | 60.270 | 47.619 | 10.24 | 0.00 | 43.23 | 2.40 |
2716 | 2752 | 2.029739 | TGTTGTTGGTCGCGAGATCTTA | 60.030 | 45.455 | 10.24 | 0.00 | 43.23 | 2.10 |
2717 | 2753 | 3.187700 | GTTGTTGGTCGCGAGATCTTAT | 58.812 | 45.455 | 10.24 | 0.00 | 43.23 | 1.73 |
2718 | 2754 | 2.809446 | TGTTGGTCGCGAGATCTTATG | 58.191 | 47.619 | 10.24 | 0.00 | 43.23 | 1.90 |
2719 | 2755 | 2.128035 | GTTGGTCGCGAGATCTTATGG | 58.872 | 52.381 | 10.24 | 0.00 | 43.23 | 2.74 |
2720 | 2756 | 0.673985 | TGGTCGCGAGATCTTATGGG | 59.326 | 55.000 | 10.24 | 0.00 | 43.23 | 4.00 |
2721 | 2757 | 0.674534 | GGTCGCGAGATCTTATGGGT | 59.325 | 55.000 | 10.24 | 0.00 | 45.19 | 4.51 |
2722 | 2758 | 1.068741 | GGTCGCGAGATCTTATGGGTT | 59.931 | 52.381 | 10.24 | 0.00 | 45.19 | 4.11 |
2723 | 2759 | 2.483188 | GGTCGCGAGATCTTATGGGTTT | 60.483 | 50.000 | 10.24 | 0.00 | 45.19 | 3.27 |
2724 | 2760 | 2.795470 | GTCGCGAGATCTTATGGGTTTC | 59.205 | 50.000 | 10.24 | 0.00 | 45.19 | 2.78 |
2725 | 2761 | 2.429250 | TCGCGAGATCTTATGGGTTTCA | 59.571 | 45.455 | 3.71 | 0.00 | 33.31 | 2.69 |
2726 | 2762 | 2.540101 | CGCGAGATCTTATGGGTTTCAC | 59.460 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2727 | 2763 | 2.872858 | GCGAGATCTTATGGGTTTCACC | 59.127 | 50.000 | 0.00 | 0.00 | 37.60 | 4.02 |
2728 | 2764 | 3.432326 | GCGAGATCTTATGGGTTTCACCT | 60.432 | 47.826 | 0.00 | 0.00 | 38.64 | 4.00 |
2729 | 2765 | 4.372656 | CGAGATCTTATGGGTTTCACCTC | 58.627 | 47.826 | 0.00 | 0.00 | 38.64 | 3.85 |
2730 | 2766 | 4.100189 | CGAGATCTTATGGGTTTCACCTCT | 59.900 | 45.833 | 0.00 | 0.00 | 38.64 | 3.69 |
2731 | 2767 | 5.302059 | CGAGATCTTATGGGTTTCACCTCTA | 59.698 | 44.000 | 0.00 | 0.00 | 38.64 | 2.43 |
2732 | 2768 | 6.515862 | CGAGATCTTATGGGTTTCACCTCTAG | 60.516 | 46.154 | 0.00 | 0.00 | 38.64 | 2.43 |
2733 | 2769 | 4.755266 | TCTTATGGGTTTCACCTCTAGC | 57.245 | 45.455 | 0.00 | 0.00 | 38.64 | 3.42 |
2734 | 2770 | 3.454812 | TCTTATGGGTTTCACCTCTAGCC | 59.545 | 47.826 | 0.00 | 0.00 | 38.64 | 3.93 |
2735 | 2771 | 1.972588 | ATGGGTTTCACCTCTAGCCT | 58.027 | 50.000 | 0.00 | 0.00 | 38.64 | 4.58 |
2736 | 2772 | 0.984230 | TGGGTTTCACCTCTAGCCTG | 59.016 | 55.000 | 0.00 | 0.00 | 38.64 | 4.85 |
2737 | 2773 | 0.393132 | GGGTTTCACCTCTAGCCTGC | 60.393 | 60.000 | 0.00 | 0.00 | 38.64 | 4.85 |
2738 | 2774 | 0.393132 | GGTTTCACCTCTAGCCTGCC | 60.393 | 60.000 | 0.00 | 0.00 | 34.73 | 4.85 |
2739 | 2775 | 0.393132 | GTTTCACCTCTAGCCTGCCC | 60.393 | 60.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2740 | 2776 | 1.562672 | TTTCACCTCTAGCCTGCCCC | 61.563 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
2741 | 2777 | 2.688666 | CACCTCTAGCCTGCCCCA | 60.689 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
2742 | 2778 | 2.124996 | ACCTCTAGCCTGCCCCAA | 59.875 | 61.111 | 0.00 | 0.00 | 0.00 | 4.12 |
2743 | 2779 | 2.301738 | ACCTCTAGCCTGCCCCAAC | 61.302 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
2744 | 2780 | 1.997874 | CCTCTAGCCTGCCCCAACT | 60.998 | 63.158 | 0.00 | 0.00 | 0.00 | 3.16 |
2745 | 2781 | 1.566298 | CCTCTAGCCTGCCCCAACTT | 61.566 | 60.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2746 | 2782 | 0.393537 | CTCTAGCCTGCCCCAACTTG | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2747 | 2783 | 1.133809 | TCTAGCCTGCCCCAACTTGT | 61.134 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2748 | 2784 | 0.251341 | CTAGCCTGCCCCAACTTGTT | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2749 | 2785 | 0.187361 | TAGCCTGCCCCAACTTGTTT | 59.813 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2750 | 2786 | 1.069596 | GCCTGCCCCAACTTGTTTG | 59.930 | 57.895 | 0.00 | 0.00 | 34.63 | 2.93 |
2761 | 2797 | 3.123050 | CAACTTGTTTGGCACTAAAGGC | 58.877 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
2762 | 2798 | 2.666317 | ACTTGTTTGGCACTAAAGGCT | 58.334 | 42.857 | 0.00 | 0.00 | 34.73 | 4.58 |
2763 | 2799 | 3.031013 | ACTTGTTTGGCACTAAAGGCTT | 58.969 | 40.909 | 0.00 | 0.00 | 34.73 | 4.35 |
2764 | 2800 | 3.450817 | ACTTGTTTGGCACTAAAGGCTTT | 59.549 | 39.130 | 17.76 | 17.76 | 34.73 | 3.51 |
2765 | 2801 | 3.451141 | TGTTTGGCACTAAAGGCTTTG | 57.549 | 42.857 | 22.32 | 13.97 | 34.73 | 2.77 |
2766 | 2802 | 2.763448 | TGTTTGGCACTAAAGGCTTTGT | 59.237 | 40.909 | 22.32 | 14.58 | 34.73 | 2.83 |
2767 | 2803 | 3.196685 | TGTTTGGCACTAAAGGCTTTGTT | 59.803 | 39.130 | 22.32 | 6.06 | 34.73 | 2.83 |
2768 | 2804 | 3.451141 | TTGGCACTAAAGGCTTTGTTG | 57.549 | 42.857 | 22.32 | 18.03 | 34.73 | 3.33 |
2769 | 2805 | 2.383855 | TGGCACTAAAGGCTTTGTTGT | 58.616 | 42.857 | 22.32 | 14.44 | 34.73 | 3.32 |
2770 | 2806 | 2.763448 | TGGCACTAAAGGCTTTGTTGTT | 59.237 | 40.909 | 22.32 | 0.00 | 34.73 | 2.83 |
2771 | 2807 | 3.123050 | GGCACTAAAGGCTTTGTTGTTG | 58.877 | 45.455 | 22.32 | 11.95 | 0.00 | 3.33 |
2772 | 2808 | 3.430236 | GGCACTAAAGGCTTTGTTGTTGT | 60.430 | 43.478 | 22.32 | 8.35 | 0.00 | 3.32 |
2773 | 2809 | 4.180817 | GCACTAAAGGCTTTGTTGTTGTT | 58.819 | 39.130 | 22.32 | 0.00 | 0.00 | 2.83 |
2774 | 2810 | 4.032786 | GCACTAAAGGCTTTGTTGTTGTTG | 59.967 | 41.667 | 22.32 | 8.24 | 0.00 | 3.33 |
2775 | 2811 | 5.167845 | CACTAAAGGCTTTGTTGTTGTTGT | 58.832 | 37.500 | 22.32 | 0.00 | 0.00 | 3.32 |
2776 | 2812 | 5.637387 | CACTAAAGGCTTTGTTGTTGTTGTT | 59.363 | 36.000 | 22.32 | 0.00 | 0.00 | 2.83 |
2777 | 2813 | 5.637387 | ACTAAAGGCTTTGTTGTTGTTGTTG | 59.363 | 36.000 | 22.32 | 0.00 | 0.00 | 3.33 |
2778 | 2814 | 3.951775 | AGGCTTTGTTGTTGTTGTTGA | 57.048 | 38.095 | 0.00 | 0.00 | 0.00 | 3.18 |
2779 | 2815 | 3.584834 | AGGCTTTGTTGTTGTTGTTGAC | 58.415 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
2780 | 2816 | 3.006323 | AGGCTTTGTTGTTGTTGTTGACA | 59.994 | 39.130 | 0.00 | 0.00 | 36.19 | 3.58 |
2781 | 2817 | 3.932089 | GGCTTTGTTGTTGTTGTTGACAT | 59.068 | 39.130 | 0.00 | 0.00 | 38.26 | 3.06 |
2782 | 2818 | 4.201705 | GGCTTTGTTGTTGTTGTTGACATG | 60.202 | 41.667 | 0.00 | 0.00 | 38.26 | 3.21 |
2783 | 2819 | 4.624882 | GCTTTGTTGTTGTTGTTGACATGA | 59.375 | 37.500 | 0.00 | 0.00 | 38.26 | 3.07 |
2784 | 2820 | 5.444481 | GCTTTGTTGTTGTTGTTGACATGAC | 60.444 | 40.000 | 0.00 | 0.00 | 38.26 | 3.06 |
2785 | 2821 | 4.773323 | TGTTGTTGTTGTTGACATGACA | 57.227 | 36.364 | 0.00 | 0.00 | 38.26 | 3.58 |
2786 | 2822 | 5.126396 | TGTTGTTGTTGTTGACATGACAA | 57.874 | 34.783 | 6.51 | 6.51 | 36.90 | 3.18 |
2787 | 2823 | 5.718146 | TGTTGTTGTTGTTGACATGACAAT | 58.282 | 33.333 | 13.54 | 0.00 | 39.71 | 2.71 |
2788 | 2824 | 5.575995 | TGTTGTTGTTGTTGACATGACAATG | 59.424 | 36.000 | 13.54 | 0.00 | 39.71 | 2.82 |
2877 | 2913 | 3.642848 | ACACAGACAGGAAAATTGGCATT | 59.357 | 39.130 | 0.00 | 0.00 | 0.00 | 3.56 |
2959 | 2995 | 1.686587 | TCTTCAACTCTCGAAGCACCA | 59.313 | 47.619 | 0.00 | 0.00 | 39.80 | 4.17 |
2979 | 3015 | 0.531090 | CCGACACCTTTGACACGGAA | 60.531 | 55.000 | 0.00 | 0.00 | 38.60 | 4.30 |
3843 | 3891 | 2.371841 | TGCTGCTTCTAAAGGACTCCAA | 59.628 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
3865 | 3913 | 8.183536 | TCCAATTCATATTCTTGATGAACAACG | 58.816 | 33.333 | 0.40 | 0.00 | 44.03 | 4.10 |
3873 | 3921 | 9.773328 | ATATTCTTGATGAACAACGTACATTTG | 57.227 | 29.630 | 0.00 | 3.23 | 37.52 | 2.32 |
4220 | 4268 | 2.086094 | TGTTAGTCGAGCGTACCATGA | 58.914 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
4231 | 4279 | 1.464608 | CGTACCATGAACACTTGGCAG | 59.535 | 52.381 | 0.00 | 0.00 | 36.41 | 4.85 |
4272 | 4320 | 4.178545 | ACAAAATGCGAGGGAATTTGAG | 57.821 | 40.909 | 4.95 | 0.00 | 31.52 | 3.02 |
4299 | 4347 | 6.294508 | CGGAGTGGAAAACCAAAATTAGTGAT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
4331 | 4379 | 9.077885 | TGAAGGATGAAGTAGCAGTTTAATTTT | 57.922 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
4417 | 4465 | 2.336088 | CTGCCCCTTGTGTTTGCG | 59.664 | 61.111 | 0.00 | 0.00 | 0.00 | 4.85 |
4439 | 4507 | 8.028540 | TGCGCCTGTATAATTAAAGACATATG | 57.971 | 34.615 | 4.18 | 0.00 | 0.00 | 1.78 |
4454 | 4522 | 6.747414 | AGACATATGTTTGCTATGGAGGTA | 57.253 | 37.500 | 10.30 | 0.00 | 32.06 | 3.08 |
4571 | 4639 | 6.388619 | AATGCCGTCTCCCCTATATATTTT | 57.611 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
4616 | 5035 | 7.476540 | AGTAAATGCATCGAGGTATGGTATA | 57.523 | 36.000 | 0.34 | 0.00 | 0.00 | 1.47 |
4637 | 5056 | 8.068380 | GGTATATTCATTCGTCCTTTACTTTGC | 58.932 | 37.037 | 0.00 | 0.00 | 0.00 | 3.68 |
4793 | 5220 | 4.384056 | CTCCTGAACAAGAATGTGACAGT | 58.616 | 43.478 | 0.00 | 0.00 | 40.46 | 3.55 |
4979 | 5515 | 6.689241 | CACGTAACTCATTGTTTTTACAGCAA | 59.311 | 34.615 | 0.00 | 0.00 | 39.89 | 3.91 |
4982 | 5542 | 4.606961 | ACTCATTGTTTTTACAGCAACGG | 58.393 | 39.130 | 0.00 | 0.00 | 0.00 | 4.44 |
4988 | 5548 | 3.057876 | TGTTTTTACAGCAACGGCATAGG | 60.058 | 43.478 | 0.00 | 0.00 | 44.61 | 2.57 |
5022 | 5582 | 3.454812 | ACCCGATTCTTGCTAGGTATGTT | 59.545 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
5025 | 5585 | 4.508124 | CCGATTCTTGCTAGGTATGTTGTC | 59.492 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
5090 | 5650 | 5.847304 | TGCTATGAGATGCTAGAATTCGTT | 58.153 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
5104 | 5664 | 5.591099 | AGAATTCGTTTTGCAACAAGACAT | 58.409 | 33.333 | 0.00 | 0.00 | 32.54 | 3.06 |
5121 | 5681 | 1.619827 | ACATGCCAATTGACCAACCAG | 59.380 | 47.619 | 7.12 | 0.00 | 0.00 | 4.00 |
5129 | 5689 | 5.713025 | CCAATTGACCAACCAGTAATCTTG | 58.287 | 41.667 | 7.12 | 0.00 | 0.00 | 3.02 |
5165 | 5729 | 7.546250 | TCTAGTGTCATCTCTTCCTTCTTTT | 57.454 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
5167 | 5731 | 9.090103 | TCTAGTGTCATCTCTTCCTTCTTTTAA | 57.910 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
5168 | 5732 | 9.364989 | CTAGTGTCATCTCTTCCTTCTTTTAAG | 57.635 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
5182 | 5749 | 5.365403 | TCTTTTAAGTATTGGTTGTGCGG | 57.635 | 39.130 | 0.00 | 0.00 | 0.00 | 5.69 |
5220 | 5788 | 2.437281 | AGGCAGATGATACCTGACCAAG | 59.563 | 50.000 | 0.00 | 0.00 | 40.50 | 3.61 |
5222 | 5790 | 3.201290 | GCAGATGATACCTGACCAAGTG | 58.799 | 50.000 | 0.00 | 0.00 | 33.65 | 3.16 |
5224 | 5792 | 4.623886 | GCAGATGATACCTGACCAAGTGAA | 60.624 | 45.833 | 0.00 | 0.00 | 33.65 | 3.18 |
5225 | 5793 | 5.491070 | CAGATGATACCTGACCAAGTGAAA | 58.509 | 41.667 | 0.00 | 0.00 | 33.65 | 2.69 |
5226 | 5794 | 5.352569 | CAGATGATACCTGACCAAGTGAAAC | 59.647 | 44.000 | 0.00 | 0.00 | 33.65 | 2.78 |
5228 | 5796 | 3.392947 | TGATACCTGACCAAGTGAAACCA | 59.607 | 43.478 | 0.00 | 0.00 | 37.80 | 3.67 |
5229 | 5797 | 2.348411 | ACCTGACCAAGTGAAACCAG | 57.652 | 50.000 | 0.00 | 0.00 | 37.80 | 4.00 |
5253 | 5940 | 9.918379 | CAGAAATCCTGCCCTTCATTAGGACTT | 62.918 | 44.444 | 0.00 | 0.00 | 41.76 | 3.01 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
135 | 139 | 4.709397 | TGGACAAATATTTTGGCGAAGGAT | 59.291 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
136 | 140 | 4.082845 | TGGACAAATATTTTGGCGAAGGA | 58.917 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
137 | 141 | 4.448537 | TGGACAAATATTTTGGCGAAGG | 57.551 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
163 | 167 | 3.644966 | TGAATCACACCTTATGGTCCC | 57.355 | 47.619 | 0.00 | 0.00 | 46.60 | 4.46 |
335 | 347 | 4.708726 | ATTAGCACTGACCATGAAAAGC | 57.291 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
336 | 348 | 8.299570 | AGTAAAATTAGCACTGACCATGAAAAG | 58.700 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
341 | 353 | 6.500684 | ACAGTAAAATTAGCACTGACCATG | 57.499 | 37.500 | 16.60 | 0.00 | 41.80 | 3.66 |
342 | 354 | 7.883311 | ACTAACAGTAAAATTAGCACTGACCAT | 59.117 | 33.333 | 16.60 | 6.42 | 41.80 | 3.55 |
344 | 356 | 7.668525 | ACTAACAGTAAAATTAGCACTGACC | 57.331 | 36.000 | 16.60 | 0.00 | 41.80 | 4.02 |
509 | 531 | 5.841957 | AAATGGATGATGCTTTAGGTGTC | 57.158 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
639 | 669 | 5.796424 | AAACCAAAGTTCTGATGCTCAAT | 57.204 | 34.783 | 0.00 | 0.00 | 34.19 | 2.57 |
742 | 772 | 9.412460 | ACAGCATATTCTCATTTTGAAGGAATA | 57.588 | 29.630 | 0.00 | 0.00 | 32.06 | 1.75 |
882 | 913 | 3.249799 | TGTTCTGTGGTTTATTGTCTGCG | 59.750 | 43.478 | 0.00 | 0.00 | 0.00 | 5.18 |
1081 | 1112 | 2.476320 | GCAAAGCCCATCGGAGAGC | 61.476 | 63.158 | 0.00 | 0.00 | 43.63 | 4.09 |
1151 | 1182 | 7.997773 | AAAAGAGAATTCTTACTTGGGGTAC | 57.002 | 36.000 | 9.87 | 0.00 | 42.80 | 3.34 |
1323 | 1356 | 4.380531 | TCTTCTGTCAACTTACTTGCTGG | 58.619 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
1331 | 1364 | 9.025041 | TCTCTAACATGATCTTCTGTCAACTTA | 57.975 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1355 | 1388 | 3.974719 | TCTCTCACTTATCCTGTGCTCT | 58.025 | 45.455 | 0.00 | 0.00 | 35.58 | 4.09 |
1357 | 1390 | 4.284490 | TGTTTCTCTCACTTATCCTGTGCT | 59.716 | 41.667 | 0.00 | 0.00 | 35.58 | 4.40 |
1375 | 1408 | 7.221838 | CCTCTAAGTTCTTCTCGATCATGTTTC | 59.778 | 40.741 | 0.00 | 0.00 | 0.00 | 2.78 |
1380 | 1413 | 7.432869 | CATTCCTCTAAGTTCTTCTCGATCAT | 58.567 | 38.462 | 0.00 | 0.00 | 0.00 | 2.45 |
1385 | 1418 | 5.004922 | AGCATTCCTCTAAGTTCTTCTCG | 57.995 | 43.478 | 0.00 | 0.00 | 0.00 | 4.04 |
1398 | 1431 | 5.180868 | CCTTATACATCTGCAAGCATTCCTC | 59.819 | 44.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1403 | 1436 | 5.039920 | TCACCTTATACATCTGCAAGCAT | 57.960 | 39.130 | 0.00 | 0.00 | 0.00 | 3.79 |
1412 | 1445 | 7.280876 | TCAGTTTCAGCATTCACCTTATACATC | 59.719 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
1452 | 1485 | 6.744537 | GCATTGTATACAAAAGAACAGAGCTG | 59.255 | 38.462 | 21.57 | 11.66 | 39.55 | 4.24 |
1453 | 1486 | 6.430925 | TGCATTGTATACAAAAGAACAGAGCT | 59.569 | 34.615 | 21.57 | 0.00 | 39.55 | 4.09 |
1493 | 1526 | 4.141937 | TGCACAATATCAGTGTCCTACTCC | 60.142 | 45.833 | 9.26 | 0.00 | 37.60 | 3.85 |
1501 | 1534 | 8.246180 | CCTAAAAGAAATGCACAATATCAGTGT | 58.754 | 33.333 | 9.26 | 0.00 | 39.17 | 3.55 |
1530 | 1563 | 9.453572 | TTTGTCAATTATGAGTATCTCTGCTTT | 57.546 | 29.630 | 0.00 | 0.00 | 35.88 | 3.51 |
1691 | 1724 | 4.084013 | GCATTAGTAAGTTGCGGCGATATT | 60.084 | 41.667 | 12.98 | 1.27 | 0.00 | 1.28 |
1692 | 1725 | 3.432252 | GCATTAGTAAGTTGCGGCGATAT | 59.568 | 43.478 | 12.98 | 0.00 | 0.00 | 1.63 |
1714 | 1747 | 3.077484 | ACCCAGAGGTCACATGAAATG | 57.923 | 47.619 | 0.00 | 0.00 | 46.45 | 2.32 |
1824 | 1857 | 1.541588 | GCTCGCAACAAGAATTCCCTT | 59.458 | 47.619 | 0.65 | 0.00 | 0.00 | 3.95 |
1835 | 1868 | 1.005037 | CCAGTACCTGCTCGCAACA | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 3.33 |
1841 | 1874 | 2.237392 | AGGATTTGTCCAGTACCTGCTC | 59.763 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1853 | 1886 | 6.024552 | TGCAAGGTTGATTAAGGATTTGTC | 57.975 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
1885 | 1918 | 6.303839 | TGCATGGTCTAAAATATAACCTCCC | 58.696 | 40.000 | 0.00 | 0.00 | 32.82 | 4.30 |
1888 | 1921 | 8.034313 | TCTCTGCATGGTCTAAAATATAACCT | 57.966 | 34.615 | 0.00 | 0.00 | 32.82 | 3.50 |
1890 | 1923 | 9.937175 | GTTTCTCTGCATGGTCTAAAATATAAC | 57.063 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
1950 | 1983 | 2.392662 | TGGCCATTCTTGGTTTGTTCA | 58.607 | 42.857 | 0.00 | 0.00 | 45.57 | 3.18 |
1955 | 1988 | 1.070601 | GTGCTTGGCCATTCTTGGTTT | 59.929 | 47.619 | 6.09 | 0.00 | 45.57 | 3.27 |
1976 | 2009 | 5.404946 | TCTTTAGTCGTATCGTTCCTTTGG | 58.595 | 41.667 | 0.00 | 0.00 | 0.00 | 3.28 |
2074 | 2107 | 1.145945 | TGGTACATGGTGGGAGCAAAA | 59.854 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
2095 | 2128 | 5.879223 | AGAGACAAGGATGAATACAAAGCTG | 59.121 | 40.000 | 0.00 | 0.00 | 0.00 | 4.24 |
2101 | 2134 | 4.705023 | TCGACAGAGACAAGGATGAATACA | 59.295 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
2194 | 2227 | 4.919168 | TCGACACGACAACTATTTTGGTAG | 59.081 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2195 | 2228 | 4.869215 | TCGACACGACAACTATTTTGGTA | 58.131 | 39.130 | 0.00 | 0.00 | 0.00 | 3.25 |
2207 | 2240 | 2.915659 | AGGGGCTTCGACACGACA | 60.916 | 61.111 | 0.00 | 0.00 | 34.89 | 4.35 |
2251 | 2284 | 2.490903 | GACTTGGTCTTCTGCATTGCAT | 59.509 | 45.455 | 12.53 | 0.00 | 38.13 | 3.96 |
2271 | 2304 | 0.253610 | ACCACGGTGTTTTGACCTGA | 59.746 | 50.000 | 7.45 | 0.00 | 33.35 | 3.86 |
2292 | 2325 | 3.553096 | CCTGGCAGTAACATCTACGGATC | 60.553 | 52.174 | 14.43 | 0.00 | 0.00 | 3.36 |
2293 | 2326 | 2.365617 | CCTGGCAGTAACATCTACGGAT | 59.634 | 50.000 | 14.43 | 0.00 | 0.00 | 4.18 |
2294 | 2327 | 1.754803 | CCTGGCAGTAACATCTACGGA | 59.245 | 52.381 | 14.43 | 0.00 | 0.00 | 4.69 |
2295 | 2328 | 1.480954 | ACCTGGCAGTAACATCTACGG | 59.519 | 52.381 | 14.43 | 0.00 | 0.00 | 4.02 |
2296 | 2329 | 2.540515 | CACCTGGCAGTAACATCTACG | 58.459 | 52.381 | 14.43 | 0.00 | 0.00 | 3.51 |
2297 | 2330 | 2.420129 | CCCACCTGGCAGTAACATCTAC | 60.420 | 54.545 | 14.43 | 0.00 | 0.00 | 2.59 |
2298 | 2331 | 1.837439 | CCCACCTGGCAGTAACATCTA | 59.163 | 52.381 | 14.43 | 0.00 | 0.00 | 1.98 |
2299 | 2332 | 0.620556 | CCCACCTGGCAGTAACATCT | 59.379 | 55.000 | 14.43 | 0.00 | 0.00 | 2.90 |
2304 | 2337 | 0.770557 | AACCTCCCACCTGGCAGTAA | 60.771 | 55.000 | 14.43 | 0.00 | 0.00 | 2.24 |
2311 | 2344 | 1.697432 | TGTGTTCTAACCTCCCACCTG | 59.303 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
2347 | 2380 | 8.955061 | AATTTGTTTTGTCGATTGTCATAGAG | 57.045 | 30.769 | 0.00 | 0.00 | 0.00 | 2.43 |
2409 | 2442 | 6.664428 | ATATATGCCGGCAAGGTAATTTTT | 57.336 | 33.333 | 36.33 | 15.64 | 43.70 | 1.94 |
2413 | 2446 | 4.943705 | CAGAATATATGCCGGCAAGGTAAT | 59.056 | 41.667 | 36.33 | 22.33 | 43.70 | 1.89 |
2416 | 2449 | 2.783135 | CAGAATATATGCCGGCAAGGT | 58.217 | 47.619 | 36.33 | 23.69 | 43.70 | 3.50 |
2502 | 2536 | 6.042777 | TGCTCGTGTCTCCTTTTATATCAAG | 58.957 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2582 | 2616 | 4.360951 | TGTTCCCTTACAACCGAGAAAT | 57.639 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
2696 | 2732 | 1.429463 | AAGATCTCGCGACCAACAAC | 58.571 | 50.000 | 3.71 | 0.00 | 0.00 | 3.32 |
2697 | 2733 | 3.186909 | CATAAGATCTCGCGACCAACAA | 58.813 | 45.455 | 3.71 | 0.00 | 0.00 | 2.83 |
2698 | 2734 | 2.481276 | CCATAAGATCTCGCGACCAACA | 60.481 | 50.000 | 3.71 | 0.00 | 0.00 | 3.33 |
2699 | 2735 | 2.128035 | CCATAAGATCTCGCGACCAAC | 58.872 | 52.381 | 3.71 | 0.00 | 0.00 | 3.77 |
2700 | 2736 | 1.068588 | CCCATAAGATCTCGCGACCAA | 59.931 | 52.381 | 3.71 | 0.00 | 0.00 | 3.67 |
2701 | 2737 | 0.673985 | CCCATAAGATCTCGCGACCA | 59.326 | 55.000 | 3.71 | 0.00 | 0.00 | 4.02 |
2702 | 2738 | 0.674534 | ACCCATAAGATCTCGCGACC | 59.325 | 55.000 | 3.71 | 0.00 | 0.00 | 4.79 |
2703 | 2739 | 2.510768 | AACCCATAAGATCTCGCGAC | 57.489 | 50.000 | 3.71 | 0.00 | 0.00 | 5.19 |
2704 | 2740 | 2.429250 | TGAAACCCATAAGATCTCGCGA | 59.571 | 45.455 | 9.26 | 9.26 | 0.00 | 5.87 |
2705 | 2741 | 2.540101 | GTGAAACCCATAAGATCTCGCG | 59.460 | 50.000 | 0.00 | 0.00 | 0.00 | 5.87 |
2720 | 2756 | 0.393132 | GGGCAGGCTAGAGGTGAAAC | 60.393 | 60.000 | 0.00 | 0.00 | 0.00 | 2.78 |
2721 | 2757 | 1.562672 | GGGGCAGGCTAGAGGTGAAA | 61.563 | 60.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2722 | 2758 | 1.995626 | GGGGCAGGCTAGAGGTGAA | 60.996 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
2723 | 2759 | 2.365635 | GGGGCAGGCTAGAGGTGA | 60.366 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
2724 | 2760 | 2.300967 | TTGGGGCAGGCTAGAGGTG | 61.301 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
2725 | 2761 | 2.124996 | TTGGGGCAGGCTAGAGGT | 59.875 | 61.111 | 0.00 | 0.00 | 0.00 | 3.85 |
2726 | 2762 | 1.566298 | AAGTTGGGGCAGGCTAGAGG | 61.566 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2727 | 2763 | 0.393537 | CAAGTTGGGGCAGGCTAGAG | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2728 | 2764 | 1.133809 | ACAAGTTGGGGCAGGCTAGA | 61.134 | 55.000 | 7.96 | 0.00 | 0.00 | 2.43 |
2729 | 2765 | 0.251341 | AACAAGTTGGGGCAGGCTAG | 60.251 | 55.000 | 7.96 | 0.00 | 0.00 | 3.42 |
2730 | 2766 | 0.187361 | AAACAAGTTGGGGCAGGCTA | 59.813 | 50.000 | 7.96 | 0.00 | 0.00 | 3.93 |
2731 | 2767 | 1.075301 | AAACAAGTTGGGGCAGGCT | 60.075 | 52.632 | 7.96 | 0.00 | 0.00 | 4.58 |
2732 | 2768 | 1.069596 | CAAACAAGTTGGGGCAGGC | 59.930 | 57.895 | 7.96 | 0.00 | 33.18 | 4.85 |
2740 | 2776 | 3.123050 | GCCTTTAGTGCCAAACAAGTTG | 58.877 | 45.455 | 0.00 | 0.00 | 36.94 | 3.16 |
2741 | 2777 | 3.031013 | AGCCTTTAGTGCCAAACAAGTT | 58.969 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
2742 | 2778 | 2.666317 | AGCCTTTAGTGCCAAACAAGT | 58.334 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
2743 | 2779 | 3.733443 | AAGCCTTTAGTGCCAAACAAG | 57.267 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
2744 | 2780 | 3.196685 | ACAAAGCCTTTAGTGCCAAACAA | 59.803 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
2745 | 2781 | 2.763448 | ACAAAGCCTTTAGTGCCAAACA | 59.237 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
2746 | 2782 | 3.452755 | ACAAAGCCTTTAGTGCCAAAC | 57.547 | 42.857 | 0.00 | 0.00 | 0.00 | 2.93 |
2747 | 2783 | 3.196685 | ACAACAAAGCCTTTAGTGCCAAA | 59.803 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
2748 | 2784 | 2.763448 | ACAACAAAGCCTTTAGTGCCAA | 59.237 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
2749 | 2785 | 2.383855 | ACAACAAAGCCTTTAGTGCCA | 58.616 | 42.857 | 0.00 | 0.00 | 0.00 | 4.92 |
2750 | 2786 | 3.123050 | CAACAACAAAGCCTTTAGTGCC | 58.877 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
2751 | 2787 | 3.780902 | ACAACAACAAAGCCTTTAGTGC | 58.219 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
2752 | 2788 | 5.167845 | ACAACAACAACAAAGCCTTTAGTG | 58.832 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
2753 | 2789 | 5.400066 | ACAACAACAACAAAGCCTTTAGT | 57.600 | 34.783 | 0.00 | 0.00 | 0.00 | 2.24 |
2754 | 2790 | 5.866633 | TCAACAACAACAACAAAGCCTTTAG | 59.133 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2755 | 2791 | 5.635700 | GTCAACAACAACAACAAAGCCTTTA | 59.364 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2756 | 2792 | 4.450757 | GTCAACAACAACAACAAAGCCTTT | 59.549 | 37.500 | 0.00 | 0.00 | 0.00 | 3.11 |
2757 | 2793 | 3.993736 | GTCAACAACAACAACAAAGCCTT | 59.006 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
2758 | 2794 | 3.006323 | TGTCAACAACAACAACAAAGCCT | 59.994 | 39.130 | 0.00 | 0.00 | 34.03 | 4.58 |
2759 | 2795 | 3.321497 | TGTCAACAACAACAACAAAGCC | 58.679 | 40.909 | 0.00 | 0.00 | 34.03 | 4.35 |
2760 | 2796 | 4.624882 | TCATGTCAACAACAACAACAAAGC | 59.375 | 37.500 | 0.00 | 0.00 | 42.37 | 3.51 |
2761 | 2797 | 5.632764 | TGTCATGTCAACAACAACAACAAAG | 59.367 | 36.000 | 0.00 | 0.00 | 42.37 | 2.77 |
2762 | 2798 | 5.532557 | TGTCATGTCAACAACAACAACAAA | 58.467 | 33.333 | 0.00 | 0.00 | 42.37 | 2.83 |
2763 | 2799 | 5.126396 | TGTCATGTCAACAACAACAACAA | 57.874 | 34.783 | 0.00 | 0.00 | 42.37 | 2.83 |
2764 | 2800 | 4.773323 | TGTCATGTCAACAACAACAACA | 57.227 | 36.364 | 0.00 | 0.00 | 42.37 | 3.33 |
2765 | 2801 | 5.576384 | ACATTGTCATGTCAACAACAACAAC | 59.424 | 36.000 | 7.55 | 0.00 | 39.69 | 3.32 |
2766 | 2802 | 5.718146 | ACATTGTCATGTCAACAACAACAA | 58.282 | 33.333 | 7.55 | 0.69 | 39.69 | 2.83 |
2767 | 2803 | 5.321959 | ACATTGTCATGTCAACAACAACA | 57.678 | 34.783 | 7.55 | 0.00 | 39.69 | 3.33 |
2768 | 2804 | 5.500610 | GCAACATTGTCATGTCAACAACAAC | 60.501 | 40.000 | 7.55 | 0.00 | 43.34 | 3.32 |
2769 | 2805 | 4.565962 | GCAACATTGTCATGTCAACAACAA | 59.434 | 37.500 | 7.55 | 2.84 | 43.34 | 2.83 |
2770 | 2806 | 4.111198 | GCAACATTGTCATGTCAACAACA | 58.889 | 39.130 | 7.55 | 0.00 | 43.34 | 3.33 |
2771 | 2807 | 4.362279 | AGCAACATTGTCATGTCAACAAC | 58.638 | 39.130 | 7.55 | 0.00 | 43.34 | 3.32 |
2772 | 2808 | 4.652421 | AGCAACATTGTCATGTCAACAA | 57.348 | 36.364 | 7.55 | 4.30 | 43.34 | 2.83 |
2773 | 2809 | 4.320421 | GCTAGCAACATTGTCATGTCAACA | 60.320 | 41.667 | 10.63 | 0.00 | 43.34 | 3.33 |
2774 | 2810 | 4.083110 | AGCTAGCAACATTGTCATGTCAAC | 60.083 | 41.667 | 18.83 | 0.00 | 43.34 | 3.18 |
2775 | 2811 | 4.074259 | AGCTAGCAACATTGTCATGTCAA | 58.926 | 39.130 | 18.83 | 7.83 | 43.34 | 3.18 |
2776 | 2812 | 3.678289 | AGCTAGCAACATTGTCATGTCA | 58.322 | 40.909 | 18.83 | 0.00 | 43.34 | 3.58 |
2777 | 2813 | 4.394300 | AGAAGCTAGCAACATTGTCATGTC | 59.606 | 41.667 | 18.83 | 0.00 | 43.34 | 3.06 |
2778 | 2814 | 4.155462 | CAGAAGCTAGCAACATTGTCATGT | 59.845 | 41.667 | 18.83 | 0.00 | 46.34 | 3.21 |
2779 | 2815 | 4.155462 | ACAGAAGCTAGCAACATTGTCATG | 59.845 | 41.667 | 18.83 | 5.35 | 36.34 | 3.07 |
2780 | 2816 | 4.155462 | CACAGAAGCTAGCAACATTGTCAT | 59.845 | 41.667 | 18.83 | 0.00 | 0.00 | 3.06 |
2781 | 2817 | 3.499537 | CACAGAAGCTAGCAACATTGTCA | 59.500 | 43.478 | 18.83 | 0.00 | 0.00 | 3.58 |
2782 | 2818 | 3.748048 | TCACAGAAGCTAGCAACATTGTC | 59.252 | 43.478 | 18.83 | 2.38 | 0.00 | 3.18 |
2783 | 2819 | 3.743521 | TCACAGAAGCTAGCAACATTGT | 58.256 | 40.909 | 18.83 | 10.60 | 0.00 | 2.71 |
2784 | 2820 | 4.634883 | AGATCACAGAAGCTAGCAACATTG | 59.365 | 41.667 | 18.83 | 9.97 | 0.00 | 2.82 |
2785 | 2821 | 4.634883 | CAGATCACAGAAGCTAGCAACATT | 59.365 | 41.667 | 18.83 | 1.39 | 0.00 | 2.71 |
2786 | 2822 | 4.190001 | CAGATCACAGAAGCTAGCAACAT | 58.810 | 43.478 | 18.83 | 0.00 | 0.00 | 2.71 |
2787 | 2823 | 3.007290 | ACAGATCACAGAAGCTAGCAACA | 59.993 | 43.478 | 18.83 | 0.00 | 0.00 | 3.33 |
2788 | 2824 | 3.594134 | ACAGATCACAGAAGCTAGCAAC | 58.406 | 45.455 | 18.83 | 10.23 | 0.00 | 4.17 |
2877 | 2913 | 1.777878 | TGGCAACCTACCAAAGAAGGA | 59.222 | 47.619 | 0.00 | 0.00 | 36.66 | 3.36 |
2959 | 2995 | 1.227438 | CCGTGTCAAAGGTGTCGGT | 60.227 | 57.895 | 0.00 | 0.00 | 33.51 | 4.69 |
2979 | 3015 | 2.566746 | AGGGAAGGGTCATCAAGATGT | 58.433 | 47.619 | 9.66 | 0.00 | 39.72 | 3.06 |
3036 | 3072 | 8.757982 | ACTTGAGACCAATTATAGCATTGAAT | 57.242 | 30.769 | 0.00 | 0.00 | 36.39 | 2.57 |
3042 | 3078 | 7.828717 | TCAAATGACTTGAGACCAATTATAGCA | 59.171 | 33.333 | 0.00 | 0.00 | 39.20 | 3.49 |
3698 | 3746 | 8.078596 | TGTCAGTGTAATCATGAGATAGAATCG | 58.921 | 37.037 | 0.09 | 0.00 | 33.08 | 3.34 |
3843 | 3891 | 9.161629 | TGTACGTTGTTCATCAAGAATATGAAT | 57.838 | 29.630 | 0.00 | 0.00 | 43.29 | 2.57 |
3873 | 3921 | 7.332926 | TCTGATTGCTTGACTTCTTGAAGTATC | 59.667 | 37.037 | 14.99 | 13.02 | 32.22 | 2.24 |
4027 | 4075 | 2.714250 | TCCTTGCCTTTTTACTGGGAGA | 59.286 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
4084 | 4132 | 2.551459 | CAAAACTCTGCAAGGGAGTCAG | 59.449 | 50.000 | 7.48 | 0.00 | 35.24 | 3.51 |
4220 | 4268 | 1.131638 | TCTCTGACCTGCCAAGTGTT | 58.868 | 50.000 | 0.00 | 0.00 | 0.00 | 3.32 |
4299 | 4347 | 5.827797 | ACTGCTACTTCATCCTTCAAACAAA | 59.172 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
4331 | 4379 | 0.315251 | CACTTCCGCTCACAGACAGA | 59.685 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4571 | 4639 | 6.520021 | ACTAATGGATGATTGGATGGAAGA | 57.480 | 37.500 | 0.00 | 0.00 | 0.00 | 2.87 |
4616 | 5035 | 6.879458 | AGTAGCAAAGTAAAGGACGAATGAAT | 59.121 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
4652 | 5071 | 4.386652 | GGCAGCAAAGTTATGTTCATTGTG | 59.613 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
4663 | 5082 | 1.541147 | GCACATGAGGCAGCAAAGTTA | 59.459 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
4793 | 5220 | 4.083324 | GCTTGTTCATCTCCATCGTTTTCA | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
4852 | 5387 | 0.606604 | GCCCCACTCAGAAAGTACGA | 59.393 | 55.000 | 0.00 | 0.00 | 36.07 | 3.43 |
4853 | 5388 | 0.320374 | TGCCCCACTCAGAAAGTACG | 59.680 | 55.000 | 0.00 | 0.00 | 36.07 | 3.67 |
4926 | 5462 | 2.622436 | GAAGCTAGTACCTTGCCTGTG | 58.378 | 52.381 | 0.00 | 0.00 | 33.03 | 3.66 |
4979 | 5515 | 3.688694 | TGACTGTAAAACCTATGCCGT | 57.311 | 42.857 | 0.00 | 0.00 | 0.00 | 5.68 |
4982 | 5542 | 3.126343 | CGGGTTGACTGTAAAACCTATGC | 59.874 | 47.826 | 18.90 | 6.75 | 44.43 | 3.14 |
4988 | 5548 | 5.449304 | CAAGAATCGGGTTGACTGTAAAAC | 58.551 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
5022 | 5582 | 6.859112 | AGTAAAAGCTGATAGAAGAGGACA | 57.141 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
5025 | 5585 | 9.877178 | TTTCTTAGTAAAAGCTGATAGAAGAGG | 57.123 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
5090 | 5650 | 2.975732 | TTGGCATGTCTTGTTGCAAA | 57.024 | 40.000 | 0.00 | 0.00 | 40.66 | 3.68 |
5104 | 5664 | 2.666272 | TACTGGTTGGTCAATTGGCA | 57.334 | 45.000 | 12.93 | 0.00 | 0.00 | 4.92 |
5161 | 5725 | 4.915085 | CACCGCACAACCAATACTTAAAAG | 59.085 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
5165 | 5729 | 1.807742 | GCACCGCACAACCAATACTTA | 59.192 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
5167 | 5731 | 0.536233 | TGCACCGCACAACCAATACT | 60.536 | 50.000 | 0.00 | 0.00 | 31.71 | 2.12 |
5168 | 5732 | 0.525761 | ATGCACCGCACAACCAATAC | 59.474 | 50.000 | 0.00 | 0.00 | 43.04 | 1.89 |
5182 | 5749 | 1.919918 | CCTCGAGTCTTCAGATGCAC | 58.080 | 55.000 | 12.31 | 0.00 | 0.00 | 4.57 |
5220 | 5788 | 1.546029 | GGGCAGGATTTCTGGTTTCAC | 59.454 | 52.381 | 0.00 | 0.00 | 43.54 | 3.18 |
5222 | 5790 | 2.222227 | AGGGCAGGATTTCTGGTTTC | 57.778 | 50.000 | 0.00 | 0.00 | 43.54 | 2.78 |
5224 | 5792 | 1.428912 | TGAAGGGCAGGATTTCTGGTT | 59.571 | 47.619 | 0.00 | 0.00 | 43.54 | 3.67 |
5225 | 5793 | 1.075601 | TGAAGGGCAGGATTTCTGGT | 58.924 | 50.000 | 0.00 | 0.00 | 43.54 | 4.00 |
5226 | 5794 | 2.449137 | ATGAAGGGCAGGATTTCTGG | 57.551 | 50.000 | 0.00 | 0.00 | 43.54 | 3.86 |
5228 | 5796 | 3.788142 | TCCTAATGAAGGGCAGGATTTCT | 59.212 | 43.478 | 0.00 | 0.00 | 46.55 | 2.52 |
5229 | 5797 | 4.170468 | TCCTAATGAAGGGCAGGATTTC | 57.830 | 45.455 | 0.00 | 0.00 | 46.55 | 2.17 |
5253 | 5940 | 3.844211 | AGCCATAGTAGGACAAAGTGGAA | 59.156 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
5254 | 5941 | 3.197766 | CAGCCATAGTAGGACAAAGTGGA | 59.802 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.