Multiple sequence alignment - TraesCS3B01G467000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G467000 chr3B 100.000 3372 0 0 1 3372 709449027 709452398 0.000000e+00 6228.0
1 TraesCS3B01G467000 chr3B 80.479 876 157 9 894 1763 709516728 709517595 0.000000e+00 658.0
2 TraesCS3B01G467000 chr3B 84.176 613 91 5 1 610 684499362 684499971 1.040000e-164 590.0
3 TraesCS3B01G467000 chr3B 81.625 283 30 5 612 894 684500006 684500266 7.330000e-52 215.0
4 TraesCS3B01G467000 chr3A 91.189 908 69 5 894 1790 672210603 672211510 0.000000e+00 1223.0
5 TraesCS3B01G467000 chr3A 81.013 1027 161 13 894 1897 672206345 672207360 0.000000e+00 785.0
6 TraesCS3B01G467000 chr3A 87.520 641 73 6 2734 3368 672213081 672213720 0.000000e+00 734.0
7 TraesCS3B01G467000 chr3A 88.720 461 38 9 1830 2285 672211822 672212273 4.920000e-153 551.0
8 TraesCS3B01G467000 chr3A 86.588 425 50 4 2284 2706 672212685 672213104 2.370000e-126 462.0
9 TraesCS3B01G467000 chr3A 82.692 156 20 7 1897 2048 672207158 672207310 7.590000e-27 132.0
10 TraesCS3B01G467000 chr3D 87.364 918 109 6 894 1805 536979520 536980436 0.000000e+00 1046.0
11 TraesCS3B01G467000 chr3D 76.901 342 48 16 1897 2222 536980341 536980667 7.490000e-37 165.0
12 TraesCS3B01G467000 chr7D 92.496 613 46 0 5 617 178693328 178693940 0.000000e+00 878.0
13 TraesCS3B01G467000 chr7D 89.716 282 16 4 612 893 178693968 178694236 6.920000e-92 348.0
14 TraesCS3B01G467000 chr5B 82.797 622 92 9 1 610 646271876 646271258 2.960000e-150 542.0
15 TraesCS3B01G467000 chr5B 86.219 283 34 2 612 894 646271223 646270946 5.470000e-78 302.0
16 TraesCS3B01G467000 chr5B 74.315 292 63 10 2933 3215 527287909 527287621 2.750000e-21 113.0
17 TraesCS3B01G467000 chr5D 76.510 745 151 20 2644 3372 55903242 55903978 5.280000e-103 385.0
18 TraesCS3B01G467000 chr7B 80.071 281 52 1 612 892 706711898 706711622 4.410000e-49 206.0
19 TraesCS3B01G467000 chr2B 82.692 208 30 3 686 892 800463946 800463744 2.670000e-41 180.0
20 TraesCS3B01G467000 chr6A 100.000 30 0 0 723 752 371211373 371211344 4.700000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G467000 chr3B 709449027 709452398 3371 False 6228.000000 6228 100.0000 1 3372 1 chr3B.!!$F1 3371
1 TraesCS3B01G467000 chr3B 709516728 709517595 867 False 658.000000 658 80.4790 894 1763 1 chr3B.!!$F2 869
2 TraesCS3B01G467000 chr3B 684499362 684500266 904 False 402.500000 590 82.9005 1 894 2 chr3B.!!$F3 893
3 TraesCS3B01G467000 chr3A 672206345 672213720 7375 False 647.833333 1223 86.2870 894 3368 6 chr3A.!!$F1 2474
4 TraesCS3B01G467000 chr3D 536979520 536980667 1147 False 605.500000 1046 82.1325 894 2222 2 chr3D.!!$F1 1328
5 TraesCS3B01G467000 chr7D 178693328 178694236 908 False 613.000000 878 91.1060 5 893 2 chr7D.!!$F1 888
6 TraesCS3B01G467000 chr5B 646270946 646271876 930 True 422.000000 542 84.5080 1 894 2 chr5B.!!$R2 893
7 TraesCS3B01G467000 chr5D 55903242 55903978 736 False 385.000000 385 76.5100 2644 3372 1 chr5D.!!$F1 728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.031716 AGAGGTATGAGGCTGGAGCA 60.032 55.0 0.0 0.0 44.36 4.26 F
549 559 0.107703 CACTCCCGATGCCTTTGCTA 60.108 55.0 0.0 0.0 38.71 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1176 4553 0.036388 GTGATCGACATGTGGGTGGT 60.036 55.0 1.15 0.0 0.0 4.16 R
2524 6601 0.103208 CGAGATGTGGCACTACTCCC 59.897 60.0 25.86 11.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.031716 AGAGGTATGAGGCTGGAGCA 60.032 55.000 0.00 0.00 44.36 4.26
63 64 2.903798 GAGCACTCTAGCTGCTTCATT 58.096 47.619 7.79 0.00 45.23 2.57
112 113 5.925969 GCACACCTGTTTATAAAATGCAAGT 59.074 36.000 0.00 0.00 0.00 3.16
218 220 1.067295 AGTTGTGGGAGCTGGATGAA 58.933 50.000 0.00 0.00 0.00 2.57
237 239 8.006564 TGGATGAAAGGAAAAGGATGCTTATAT 58.993 33.333 0.00 0.00 30.13 0.86
293 295 1.872773 AGATTCGAGAAGGGGAGCTT 58.127 50.000 0.00 0.00 0.00 3.74
322 325 6.002082 TCGCTACATTAGAGATAGTTAGGCA 58.998 40.000 0.00 0.00 29.42 4.75
325 328 7.522399 CGCTACATTAGAGATAGTTAGGCAAGT 60.522 40.741 0.00 0.00 0.00 3.16
344 354 3.959293 AGTGAGATGTGATGCAATGGAA 58.041 40.909 0.00 0.00 0.00 3.53
469 479 0.912486 AGTAGTGTTGGAGGATGGGC 59.088 55.000 0.00 0.00 0.00 5.36
471 481 0.548926 TAGTGTTGGAGGATGGGCCA 60.549 55.000 9.61 9.61 40.02 5.36
474 484 0.413037 TGTTGGAGGATGGGCCATTT 59.587 50.000 22.20 12.42 40.02 2.32
536 546 0.319641 GTCGACAAGACCACACTCCC 60.320 60.000 11.55 0.00 43.95 4.30
549 559 0.107703 CACTCCCGATGCCTTTGCTA 60.108 55.000 0.00 0.00 38.71 3.49
553 563 0.392998 CCCGATGCCTTTGCTACTGT 60.393 55.000 0.00 0.00 38.71 3.55
617 660 2.370519 TGGTGCCACTAGAGTTGCTTTA 59.629 45.455 7.21 0.00 37.55 1.85
634 677 2.122783 TTAGACATTTGGAAGGCGGG 57.877 50.000 0.00 0.00 0.00 6.13
698 741 6.831353 TCCAACTTAAGATGTGGTTCTCAAAA 59.169 34.615 10.09 0.00 0.00 2.44
827 870 3.813596 CCCACTGTGGCTAATCGC 58.186 61.111 21.47 0.00 35.79 4.58
834 877 1.295357 TGTGGCTAATCGCGTGTTGG 61.295 55.000 5.77 6.00 40.44 3.77
966 4333 4.574271 TCGAGGCTCGCCCCGATA 62.574 66.667 31.01 10.15 40.21 2.92
997 4364 0.736053 GTCACGTTCCCAAAGTGCAA 59.264 50.000 0.00 0.00 35.97 4.08
999 4366 0.248866 CACGTTCCCAAAGTGCAACC 60.249 55.000 0.00 0.00 37.80 3.77
1000 4367 0.681564 ACGTTCCCAAAGTGCAACCA 60.682 50.000 0.00 0.00 37.80 3.67
1027 4394 0.462047 CTAAAGGCCCTCGCGTTCAT 60.462 55.000 5.77 0.00 42.08 2.57
1032 4399 2.949678 CCCTCGCGTTCATCGTCG 60.950 66.667 5.77 0.00 42.13 5.12
1089 4459 2.776526 TGCTCACCCACCACCCTT 60.777 61.111 0.00 0.00 0.00 3.95
1144 4521 2.045536 GCTCCACCCTCTTGCTGG 60.046 66.667 0.00 0.00 0.00 4.85
1157 4534 0.681733 TTGCTGGTCTCGAGAAGCTT 59.318 50.000 29.71 0.00 36.60 3.74
1188 4565 2.069776 CTCCTCACCACCCACATGT 58.930 57.895 0.00 0.00 0.00 3.21
1220 4597 2.295885 CTACCTCCGTCCGTGTCTAAT 58.704 52.381 0.00 0.00 0.00 1.73
1249 4626 0.812014 CGTGTTGTGTACCTGTGCCA 60.812 55.000 0.00 0.00 0.00 4.92
1259 4636 0.114954 ACCTGTGCCACAATCCCAAT 59.885 50.000 0.00 0.00 0.00 3.16
1316 4693 4.056065 GGTAGGCGTGGACTACACCATT 62.056 54.545 10.56 0.00 45.30 3.16
1355 4732 1.200020 GAGTTGTTTTCCGATGGGCTG 59.800 52.381 0.00 0.00 0.00 4.85
1411 4788 7.669722 TCTTGGTTTATGGAAGAAAAGCATAGT 59.330 33.333 1.13 0.00 41.25 2.12
1414 4791 6.405842 GGTTTATGGAAGAAAAGCATAGTGGG 60.406 42.308 0.00 0.00 34.17 4.61
1429 4806 2.511600 GGGGAGCGACAATGTCCG 60.512 66.667 7.91 4.48 0.00 4.79
1446 4823 4.951254 TGTCCGTTTCTTGAAGTATGACA 58.049 39.130 0.00 0.00 0.00 3.58
1478 4855 1.873591 GAACTGGTCAAGCACGTCAAT 59.126 47.619 0.00 0.00 0.00 2.57
1496 4873 2.684881 CAATATGCTCGCCAAGTTCCTT 59.315 45.455 0.00 0.00 0.00 3.36
1512 4889 0.184933 CCTTTGTGTCCCCTTCACCA 59.815 55.000 0.00 0.00 35.25 4.17
1529 4906 1.984570 CAAGGAGGAGGTGAGCCGA 60.985 63.158 0.00 0.00 40.50 5.54
1548 4925 1.819288 GAAGAGTCGTGGAGGATGTCA 59.181 52.381 0.00 0.00 0.00 3.58
1555 4932 1.091771 GTGGAGGATGTCATGCACCG 61.092 60.000 14.43 0.00 41.92 4.94
1597 4974 7.707624 TCAAGAGCTTACCAATCAATTCATT 57.292 32.000 0.00 0.00 0.00 2.57
1637 5014 1.678635 CGGGCTGCCAATGGAGAAA 60.679 57.895 22.05 0.00 0.00 2.52
1639 5016 1.197812 GGGCTGCCAATGGAGAAATT 58.802 50.000 22.05 0.00 0.00 1.82
1674 5051 1.911766 GGGAAGGTCGGTGACTGGA 60.912 63.158 0.00 0.00 32.47 3.86
1688 5065 2.026729 TGACTGGACAAACCACTTGACA 60.027 45.455 0.00 0.00 44.64 3.58
1703 5080 4.458295 CACTTGACAGAAGAGATGGCAAAT 59.542 41.667 0.00 0.00 44.81 2.32
1713 5090 4.801164 AGAGATGGCAAATAAGCTGGATT 58.199 39.130 0.00 0.00 34.17 3.01
1721 5098 5.045872 GCAAATAAGCTGGATTCCATTGTC 58.954 41.667 5.70 0.60 30.82 3.18
1731 5108 3.118592 GGATTCCATTGTCGAGGAGAAGT 60.119 47.826 0.00 0.00 34.91 3.01
1740 5117 2.162809 GTCGAGGAGAAGTTGAGAGGAC 59.837 54.545 0.00 0.00 0.00 3.85
1741 5118 2.163509 CGAGGAGAAGTTGAGAGGACA 58.836 52.381 0.00 0.00 0.00 4.02
1750 5127 2.564947 AGTTGAGAGGACATGGTCTCAC 59.435 50.000 18.95 13.30 46.98 3.51
1760 5137 4.460382 GGACATGGTCTCACATTTTGACAT 59.540 41.667 0.00 0.00 32.47 3.06
1764 5141 4.971939 TGGTCTCACATTTTGACATCTCA 58.028 39.130 0.00 0.00 32.84 3.27
1780 5157 4.403752 ACATCTCAGTGTCATGCTTAGCTA 59.596 41.667 5.60 0.00 0.00 3.32
1790 5167 4.393062 GTCATGCTTAGCTATGTGTGTGTT 59.607 41.667 5.60 0.00 0.00 3.32
1791 5168 4.631377 TCATGCTTAGCTATGTGTGTGTTC 59.369 41.667 5.60 0.00 0.00 3.18
1795 5172 1.148310 AGCTATGTGTGTGTTCGTGC 58.852 50.000 0.00 0.00 0.00 5.34
1796 5173 0.865111 GCTATGTGTGTGTTCGTGCA 59.135 50.000 0.00 0.00 0.00 4.57
1797 5174 1.262950 GCTATGTGTGTGTTCGTGCAA 59.737 47.619 0.00 0.00 0.00 4.08
1798 5175 2.903678 CTATGTGTGTGTTCGTGCAAC 58.096 47.619 0.00 0.00 35.28 4.17
1799 5176 0.380378 ATGTGTGTGTTCGTGCAACC 59.620 50.000 0.00 0.00 33.51 3.77
1800 5177 0.955919 TGTGTGTGTTCGTGCAACCA 60.956 50.000 0.00 0.00 33.51 3.67
1801 5178 0.169230 GTGTGTGTTCGTGCAACCAA 59.831 50.000 0.00 0.00 33.51 3.67
1802 5179 0.881796 TGTGTGTTCGTGCAACCAAA 59.118 45.000 0.00 0.00 33.51 3.28
1803 5180 1.269723 TGTGTGTTCGTGCAACCAAAA 59.730 42.857 0.00 0.00 33.51 2.44
1804 5181 2.094494 TGTGTGTTCGTGCAACCAAAAT 60.094 40.909 0.00 0.00 33.51 1.82
1805 5182 3.128764 TGTGTGTTCGTGCAACCAAAATA 59.871 39.130 0.00 0.00 33.51 1.40
1806 5183 4.106197 GTGTGTTCGTGCAACCAAAATAA 58.894 39.130 0.00 0.00 33.51 1.40
1807 5184 4.206200 GTGTGTTCGTGCAACCAAAATAAG 59.794 41.667 0.00 0.00 33.51 1.73
1808 5185 4.142359 TGTGTTCGTGCAACCAAAATAAGT 60.142 37.500 0.00 0.00 33.51 2.24
1809 5186 4.206200 GTGTTCGTGCAACCAAAATAAGTG 59.794 41.667 0.00 0.00 33.51 3.16
1810 5187 4.142359 TGTTCGTGCAACCAAAATAAGTGT 60.142 37.500 0.00 0.00 33.51 3.55
1811 5188 3.958704 TCGTGCAACCAAAATAAGTGTG 58.041 40.909 0.00 0.00 0.00 3.82
1812 5189 3.628032 TCGTGCAACCAAAATAAGTGTGA 59.372 39.130 0.00 0.00 0.00 3.58
1813 5190 4.096532 TCGTGCAACCAAAATAAGTGTGAA 59.903 37.500 0.00 0.00 0.00 3.18
1814 5191 4.800993 CGTGCAACCAAAATAAGTGTGAAA 59.199 37.500 0.00 0.00 0.00 2.69
1815 5192 5.461737 CGTGCAACCAAAATAAGTGTGAAAT 59.538 36.000 0.00 0.00 0.00 2.17
1816 5193 6.638873 CGTGCAACCAAAATAAGTGTGAAATA 59.361 34.615 0.00 0.00 0.00 1.40
1817 5194 7.358023 CGTGCAACCAAAATAAGTGTGAAATAC 60.358 37.037 0.00 0.00 0.00 1.89
1818 5195 7.651704 GTGCAACCAAAATAAGTGTGAAATACT 59.348 33.333 0.00 0.00 41.41 2.12
1819 5196 8.851145 TGCAACCAAAATAAGTGTGAAATACTA 58.149 29.630 0.00 0.00 37.27 1.82
1820 5197 9.855021 GCAACCAAAATAAGTGTGAAATACTAT 57.145 29.630 0.00 0.00 37.27 2.12
1886 5537 4.156556 TGTTGCCTTTTGAGATATGAGCAC 59.843 41.667 0.00 0.00 0.00 4.40
1959 5613 7.979537 AGATGTTGACTTATCGTTGTTATGCTA 59.020 33.333 0.00 0.00 0.00 3.49
1969 5623 6.729391 TCGTTGTTATGCTAAACTATGCAA 57.271 33.333 0.00 0.00 42.74 4.08
1975 5629 4.889832 ATGCTAAACTATGCAAGTGCTC 57.110 40.909 4.69 0.00 42.74 4.26
2043 5697 8.410673 TGTATTTTGATGTTTTGCTAACCCTA 57.589 30.769 0.82 0.00 0.00 3.53
2044 5698 9.030452 TGTATTTTGATGTTTTGCTAACCCTAT 57.970 29.630 0.82 0.00 0.00 2.57
2045 5699 9.869757 GTATTTTGATGTTTTGCTAACCCTATT 57.130 29.630 0.82 0.00 0.00 1.73
2046 5700 8.776376 ATTTTGATGTTTTGCTAACCCTATTG 57.224 30.769 0.82 0.00 0.00 1.90
2047 5701 6.909550 TTGATGTTTTGCTAACCCTATTGT 57.090 33.333 0.82 0.00 0.00 2.71
2048 5702 6.509418 TGATGTTTTGCTAACCCTATTGTC 57.491 37.500 0.82 0.00 0.00 3.18
2122 5776 7.452880 TGAGCAATAGAGCAAAACTTATGTT 57.547 32.000 0.00 0.00 35.86 2.71
2132 5786 9.696917 AGAGCAAAACTTATGTTTAAAAGATGG 57.303 29.630 7.12 0.00 44.70 3.51
2139 5793 8.101654 ACTTATGTTTAAAAGATGGTTGCGTA 57.898 30.769 0.00 0.00 0.00 4.42
2150 5804 9.528018 AAAAGATGGTTGCGTAAATTATTATGG 57.472 29.630 0.00 0.00 0.00 2.74
2151 5805 7.817418 AGATGGTTGCGTAAATTATTATGGT 57.183 32.000 0.00 0.00 0.00 3.55
2152 5806 8.232913 AGATGGTTGCGTAAATTATTATGGTT 57.767 30.769 0.00 0.00 0.00 3.67
2224 5888 6.895782 TGATGAAAACTACTATCGGGGAATT 58.104 36.000 0.00 0.00 0.00 2.17
2235 5899 0.759346 CGGGGAATTGGAGGGAGTAG 59.241 60.000 0.00 0.00 0.00 2.57
2238 5902 2.172930 GGGGAATTGGAGGGAGTAGTTC 59.827 54.545 0.00 0.00 0.00 3.01
2239 5903 2.844348 GGGAATTGGAGGGAGTAGTTCA 59.156 50.000 0.00 0.00 0.00 3.18
2246 5910 3.447586 TGGAGGGAGTAGTTCAAGAATCG 59.552 47.826 0.00 0.00 0.00 3.34
2269 5933 5.565695 GTTTTACGCATACCTAACACCATG 58.434 41.667 0.00 0.00 0.00 3.66
2285 5949 1.815003 CCATGTGGTCCAAAGAAGCTC 59.185 52.381 0.00 0.00 0.00 4.09
2292 6369 2.293170 GTCCAAAGAAGCTCATAGCCC 58.707 52.381 0.00 0.00 43.77 5.19
2301 6378 3.096495 TCATAGCCCAGCCCACCC 61.096 66.667 0.00 0.00 0.00 4.61
2324 6401 6.042777 CCGTGACTCATACACTCATTTGTAT 58.957 40.000 0.00 0.00 42.34 2.29
2347 6424 2.379907 ACCCCACTTTGATGAGTTGGAT 59.620 45.455 0.00 0.00 35.09 3.41
2364 6441 5.829924 AGTTGGATCAACAAAGCCTATATGG 59.170 40.000 12.46 0.00 45.66 2.74
2376 6453 7.235399 ACAAAGCCTATATGGGAATAAAATGGG 59.765 37.037 9.73 0.00 36.00 4.00
2398 6475 6.775142 TGGGAGTGACTATTTTTCAATCAACA 59.225 34.615 2.65 0.00 39.34 3.33
2484 6561 7.459795 TTTAACATTGTCATGGACATGCTAA 57.540 32.000 7.41 5.66 42.40 3.09
2485 6562 4.970662 ACATTGTCATGGACATGCTAAC 57.029 40.909 7.41 2.12 42.40 2.34
2487 6564 4.397103 ACATTGTCATGGACATGCTAACTG 59.603 41.667 7.41 4.42 42.40 3.16
2499 6576 2.621338 TGCTAACTGCTTTGATCGGAG 58.379 47.619 0.00 0.00 43.37 4.63
2500 6577 1.936547 GCTAACTGCTTTGATCGGAGG 59.063 52.381 0.00 0.00 38.95 4.30
2508 6585 1.885887 CTTTGATCGGAGGCACCAAAA 59.114 47.619 0.94 0.00 38.90 2.44
2542 6620 1.195115 TGGGAGTAGTGCCACATCTC 58.805 55.000 6.72 4.25 39.76 2.75
2545 6623 1.469940 GGAGTAGTGCCACATCTCGTG 60.470 57.143 0.00 0.00 45.92 4.35
2557 6635 5.193663 CACATCTCGTGGACTCTCAATAT 57.806 43.478 0.00 0.00 42.34 1.28
2567 6645 8.638873 TCGTGGACTCTCAATATTACAATATGT 58.361 33.333 0.00 0.00 32.17 2.29
2568 6646 8.703336 CGTGGACTCTCAATATTACAATATGTG 58.297 37.037 0.00 0.00 32.17 3.21
2613 6692 5.696724 GGAACATGACGTGAATAAGGATAGG 59.303 44.000 0.00 0.00 0.00 2.57
2642 6721 8.079809 TCTAAAACTATTGTTGTTAGCTTTGGC 58.920 33.333 0.00 0.00 36.39 4.52
2648 6727 1.521006 GTTGTTAGCTTTGGCGCAAAC 59.479 47.619 10.83 2.14 44.37 2.93
2692 6771 9.880157 ATATTCATAAAAGTGAATTGCTTTGCT 57.120 25.926 7.35 0.00 44.23 3.91
2693 6772 8.611654 ATTCATAAAAGTGAATTGCTTTGCTT 57.388 26.923 5.64 0.00 44.23 3.91
2694 6773 7.642071 TCATAAAAGTGAATTGCTTTGCTTC 57.358 32.000 5.64 0.00 36.43 3.86
2695 6774 7.208777 TCATAAAAGTGAATTGCTTTGCTTCA 58.791 30.769 5.64 0.00 36.43 3.02
2696 6775 5.723492 AAAAGTGAATTGCTTTGCTTCAC 57.277 34.783 13.30 13.30 45.75 3.18
2708 6787 3.883830 TTGCTTCACAAAAGCCAAAGA 57.116 38.095 7.26 0.00 42.36 2.52
2709 6788 3.441496 TGCTTCACAAAAGCCAAAGAG 57.559 42.857 7.26 0.00 42.36 2.85
2710 6789 2.101249 TGCTTCACAAAAGCCAAAGAGG 59.899 45.455 7.26 0.00 42.36 3.69
2734 6813 6.903883 CGGAAGCACAATACACTAACTTAT 57.096 37.500 0.00 0.00 0.00 1.73
2735 6814 7.303634 CGGAAGCACAATACACTAACTTATT 57.696 36.000 0.00 0.00 0.00 1.40
2736 6815 7.748847 CGGAAGCACAATACACTAACTTATTT 58.251 34.615 0.00 0.00 0.00 1.40
2737 6816 7.692291 CGGAAGCACAATACACTAACTTATTTG 59.308 37.037 0.00 0.00 0.00 2.32
2738 6817 7.968405 GGAAGCACAATACACTAACTTATTTGG 59.032 37.037 0.00 0.00 0.00 3.28
2739 6818 7.996098 AGCACAATACACTAACTTATTTGGT 57.004 32.000 0.00 0.00 0.00 3.67
2740 6819 8.404107 AGCACAATACACTAACTTATTTGGTT 57.596 30.769 0.00 0.00 0.00 3.67
2741 6820 8.296713 AGCACAATACACTAACTTATTTGGTTG 58.703 33.333 0.00 0.00 0.00 3.77
2757 6886 2.243810 GGTTGTCCACAAGGCCAATTA 58.756 47.619 5.01 0.00 36.39 1.40
2814 6943 3.983741 ACTTCTCACTTGTGTAGAGTGC 58.016 45.455 0.46 0.00 43.23 4.40
2818 6947 4.960938 TCTCACTTGTGTAGAGTGCAAAT 58.039 39.130 0.00 0.00 43.23 2.32
2819 6948 5.368145 TCTCACTTGTGTAGAGTGCAAATT 58.632 37.500 0.00 0.00 43.23 1.82
2853 6982 6.767902 AGTGCTTAGAGAAATGTTTGAACAGA 59.232 34.615 2.77 0.00 43.04 3.41
2856 6985 7.445096 TGCTTAGAGAAATGTTTGAACAGATGA 59.555 33.333 2.77 0.00 43.04 2.92
2871 7000 4.952460 ACAGATGAAAATGCAAGTTGCTT 58.048 34.783 27.17 19.01 45.31 3.91
2908 7037 6.959639 AACTGGTGTTGATCAACTATGTTT 57.040 33.333 32.57 19.75 41.67 2.83
2959 7088 5.423610 TCATTGTTTCAACTTTCCAAAGGGA 59.576 36.000 4.13 0.00 43.03 4.20
2963 7093 6.369629 TGTTTCAACTTTCCAAAGGGATCTA 58.630 36.000 4.13 0.00 44.48 1.98
2983 7117 9.869844 GGATCTACAAAAACTGAATTCATATCG 57.130 33.333 8.96 0.00 0.00 2.92
3010 7147 8.297426 AGATTCTTTTCGGGAAATAGTGAAAAC 58.703 33.333 0.00 0.03 35.91 2.43
3016 7153 7.995463 TTCGGGAAATAGTGAAAACAAAAAG 57.005 32.000 0.00 0.00 0.00 2.27
3090 7228 0.035343 GGTACCCAAGACTTCCAGGC 60.035 60.000 0.00 0.00 0.00 4.85
3101 7239 1.707427 ACTTCCAGGCCAAGAATGACT 59.293 47.619 5.01 0.00 0.00 3.41
3109 7247 3.589288 AGGCCAAGAATGACTCCTTACTT 59.411 43.478 5.01 0.00 0.00 2.24
3141 7279 2.163010 TCTTCAAGCTACTTACCGACGG 59.837 50.000 13.61 13.61 0.00 4.79
3154 7292 1.219522 CCGACGGTGGTGTTTGAGAC 61.220 60.000 5.48 0.00 0.00 3.36
3185 7323 2.435805 TGCAAGAAGTATCTAGGCCAGG 59.564 50.000 5.01 0.00 36.04 4.45
3198 7336 1.966451 GCCAGGAAGTTGTGTCCCG 60.966 63.158 0.00 0.00 35.59 5.14
3199 7337 1.752198 CCAGGAAGTTGTGTCCCGA 59.248 57.895 0.00 0.00 35.59 5.14
3200 7338 0.107831 CCAGGAAGTTGTGTCCCGAA 59.892 55.000 0.00 0.00 35.59 4.30
3212 7350 2.930682 GTGTCCCGAACATTCTAGAAGC 59.069 50.000 11.53 0.00 40.80 3.86
3238 7377 5.105146 TGGTGGTTCATATTTATTGGTTGGC 60.105 40.000 0.00 0.00 0.00 4.52
3242 7381 6.549364 TGGTTCATATTTATTGGTTGGCCTAG 59.451 38.462 3.32 0.00 35.27 3.02
3326 7465 6.838090 AGATACATCTCTGAGAGGACAAATGA 59.162 38.462 24.42 2.55 29.30 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.161189 CCTCTCCTCTTCAGATTAGTGCAA 59.839 45.833 0.00 0.00 0.00 4.08
47 48 2.005451 CGCAAATGAAGCAGCTAGAGT 58.995 47.619 0.00 0.00 0.00 3.24
90 91 6.928492 CCAACTTGCATTTTATAAACAGGTGT 59.072 34.615 0.00 0.00 0.00 4.16
112 113 0.322456 CGCCATCCTTCCTTGACCAA 60.322 55.000 0.00 0.00 0.00 3.67
247 249 0.749649 GTTGTTCCACCAATGCCACA 59.250 50.000 0.00 0.00 0.00 4.17
293 295 5.622180 ACTATCTCTAATGTAGCGACTGGA 58.378 41.667 0.00 0.00 0.00 3.86
322 325 3.959293 TCCATTGCATCACATCTCACTT 58.041 40.909 0.00 0.00 0.00 3.16
325 328 6.300703 TCATATTCCATTGCATCACATCTCA 58.699 36.000 0.00 0.00 0.00 3.27
344 354 9.693739 CCTGATAGAGTATACACTTCCTCATAT 57.306 37.037 8.17 0.00 34.21 1.78
376 386 1.973515 CCTGCCATATAGCTGAGGTCA 59.026 52.381 0.00 0.00 33.88 4.02
420 430 0.251787 AAGGCCCCATCAAGGTTGAC 60.252 55.000 0.00 0.00 40.49 3.18
469 479 1.414919 CATCATCCCTGGCCAAAATGG 59.585 52.381 7.01 3.91 41.55 3.16
471 481 2.674420 CTCATCATCCCTGGCCAAAAT 58.326 47.619 7.01 0.00 0.00 1.82
474 484 1.648302 CCCTCATCATCCCTGGCCAA 61.648 60.000 7.01 0.00 0.00 4.52
536 546 0.729116 CCACAGTAGCAAAGGCATCG 59.271 55.000 0.00 0.00 44.61 3.84
553 563 2.339556 GCGGCCATTGTGCTAACCA 61.340 57.895 2.24 0.00 0.00 3.67
578 588 0.110056 CAATGTCAGCTGTTGTCGCC 60.110 55.000 14.67 0.00 0.00 5.54
617 660 0.112412 AACCCGCCTTCCAAATGTCT 59.888 50.000 0.00 0.00 0.00 3.41
634 677 0.823356 TGCAGCAAAGGGTGAGGAAC 60.823 55.000 0.00 0.00 45.29 3.62
698 741 1.001974 TGGCAAGCTCGTACAGTGAAT 59.998 47.619 0.00 0.00 0.00 2.57
793 836 1.348366 TGGGCGGTACAGTTGTGTTAT 59.652 47.619 0.00 0.00 38.19 1.89
794 837 0.757512 TGGGCGGTACAGTTGTGTTA 59.242 50.000 0.00 0.00 38.19 2.41
904 4270 0.257328 TTGCAGTTGTGGGGTCTCAA 59.743 50.000 0.00 0.00 0.00 3.02
965 4332 3.460103 GAACGTGACAAGGAAGGTGTTA 58.540 45.455 0.00 0.00 0.00 2.41
966 4333 2.285977 GAACGTGACAAGGAAGGTGTT 58.714 47.619 0.00 0.00 0.00 3.32
997 4364 1.074951 GCCTTTAGCCAGGTGTGGT 59.925 57.895 0.00 0.00 46.96 4.16
1027 4394 3.321967 GGAAACGGTTTGCGACGA 58.678 55.556 11.43 0.00 0.00 4.20
1056 4423 2.509336 CAGCGGGTGGTCATCGTC 60.509 66.667 0.00 0.00 0.00 4.20
1057 4424 4.760047 GCAGCGGGTGGTCATCGT 62.760 66.667 9.49 0.00 0.00 3.73
1089 4459 2.097825 GAGAAACGGCACTAGGTCCTA 58.902 52.381 0.00 0.00 0.00 2.94
1144 4521 0.244994 TGAGGCAAGCTTCTCGAGAC 59.755 55.000 16.36 4.58 33.00 3.36
1176 4553 0.036388 GTGATCGACATGTGGGTGGT 60.036 55.000 1.15 0.00 0.00 4.16
1188 4565 1.067060 CGGAGGTAGCAATGTGATCGA 59.933 52.381 0.00 0.00 0.00 3.59
1220 4597 0.678366 ACACAACACGGCAACCAAGA 60.678 50.000 0.00 0.00 0.00 3.02
1249 4626 2.955660 ACAAACACGTCATTGGGATTGT 59.044 40.909 12.89 3.62 0.00 2.71
1259 4636 3.135225 CCATAAGGACACAAACACGTCA 58.865 45.455 0.00 0.00 36.89 4.35
1316 4693 4.870636 ACTCAAATGCTTTATCCATGGGA 58.129 39.130 13.02 0.00 35.55 4.37
1411 4788 2.668632 GGACATTGTCGCTCCCCA 59.331 61.111 10.56 0.00 32.65 4.96
1414 4791 0.442699 GAAACGGACATTGTCGCTCC 59.557 55.000 10.56 0.00 32.65 4.70
1446 4823 0.620556 ACCAGTTCGGCCATCATCTT 59.379 50.000 2.24 0.00 39.03 2.40
1496 4873 0.184933 CCTTGGTGAAGGGGACACAA 59.815 55.000 0.00 0.00 44.76 3.33
1512 4889 1.229209 TTCGGCTCACCTCCTCCTT 60.229 57.895 0.00 0.00 0.00 3.36
1529 4906 1.924731 TGACATCCTCCACGACTCTT 58.075 50.000 0.00 0.00 0.00 2.85
1548 4925 1.447838 CGAAGCTACACCGGTGCAT 60.448 57.895 34.26 18.66 0.00 3.96
1581 4958 7.953005 TTGCTCCTAATGAATTGATTGGTAA 57.047 32.000 0.00 0.00 0.00 2.85
1597 4974 4.655963 GCCAATCCTATCAATTGCTCCTA 58.344 43.478 0.00 0.00 33.65 2.94
1637 5014 3.850173 TCCCAGTCCTAAAGTAGGCAAAT 59.150 43.478 0.00 0.00 45.82 2.32
1639 5016 2.910544 TCCCAGTCCTAAAGTAGGCAA 58.089 47.619 0.00 0.00 45.82 4.52
1674 5051 4.487714 TCTCTTCTGTCAAGTGGTTTGT 57.512 40.909 0.00 0.00 38.01 2.83
1688 5065 4.080129 TCCAGCTTATTTGCCATCTCTTCT 60.080 41.667 0.00 0.00 0.00 2.85
1703 5080 3.432186 CCTCGACAATGGAATCCAGCTTA 60.432 47.826 8.40 0.00 36.75 3.09
1713 5090 2.897326 TCAACTTCTCCTCGACAATGGA 59.103 45.455 0.00 0.00 0.00 3.41
1721 5098 2.163509 TGTCCTCTCAACTTCTCCTCG 58.836 52.381 0.00 0.00 0.00 4.63
1731 5108 2.608623 TGTGAGACCATGTCCTCTCAA 58.391 47.619 13.70 5.44 43.54 3.02
1740 5117 5.413523 TGAGATGTCAAAATGTGAGACCATG 59.586 40.000 0.00 0.00 36.74 3.66
1741 5118 5.563592 TGAGATGTCAAAATGTGAGACCAT 58.436 37.500 0.00 0.00 36.74 3.55
1760 5137 4.403752 ACATAGCTAAGCATGACACTGAGA 59.596 41.667 0.00 0.00 0.00 3.27
1764 5141 4.186926 CACACATAGCTAAGCATGACACT 58.813 43.478 0.00 0.00 0.00 3.55
1777 5154 0.865111 TGCACGAACACACACATAGC 59.135 50.000 0.00 0.00 0.00 2.97
1780 5157 0.380378 GGTTGCACGAACACACACAT 59.620 50.000 0.00 0.00 36.12 3.21
1790 5167 3.628032 TCACACTTATTTTGGTTGCACGA 59.372 39.130 0.00 0.00 0.00 4.35
1791 5168 3.958704 TCACACTTATTTTGGTTGCACG 58.041 40.909 0.00 0.00 0.00 5.34
1806 5183 9.944376 ACATCAAAGTACATAGTATTTCACACT 57.056 29.630 0.00 0.00 0.00 3.55
1847 5496 5.916318 AGGCAACAAAATCAATGAGACAAA 58.084 33.333 0.00 0.00 41.41 2.83
1850 5499 6.479660 TCAAAAGGCAACAAAATCAATGAGAC 59.520 34.615 0.00 0.00 41.41 3.36
1852 5501 6.702723 TCTCAAAAGGCAACAAAATCAATGAG 59.297 34.615 0.00 0.00 41.41 2.90
1855 5504 9.158233 CATATCTCAAAAGGCAACAAAATCAAT 57.842 29.630 0.00 0.00 41.41 2.57
1856 5505 8.366401 TCATATCTCAAAAGGCAACAAAATCAA 58.634 29.630 0.00 0.00 41.41 2.57
1857 5506 7.894708 TCATATCTCAAAAGGCAACAAAATCA 58.105 30.769 0.00 0.00 41.41 2.57
1858 5507 7.009907 GCTCATATCTCAAAAGGCAACAAAATC 59.990 37.037 0.00 0.00 41.41 2.17
1859 5508 6.815142 GCTCATATCTCAAAAGGCAACAAAAT 59.185 34.615 0.00 0.00 41.41 1.82
1861 5510 5.243507 TGCTCATATCTCAAAAGGCAACAAA 59.756 36.000 0.00 0.00 41.41 2.83
1886 5537 3.991773 CTCAAATGGCATCACAAAGGTTG 59.008 43.478 0.00 0.00 0.00 3.77
1934 5587 7.005062 AGCATAACAACGATAAGTCAACATC 57.995 36.000 0.00 0.00 0.00 3.06
1959 5613 1.197721 GCACGAGCACTTGCATAGTTT 59.802 47.619 7.72 0.00 45.16 2.66
1975 5629 2.266554 ACACACATTTTTGGTTGCACG 58.733 42.857 0.00 0.00 0.00 5.34
2017 5671 7.731054 AGGGTTAGCAAAACATCAAAATACAA 58.269 30.769 4.59 0.00 0.00 2.41
2026 5680 6.759497 AGACAATAGGGTTAGCAAAACATC 57.241 37.500 4.59 0.00 0.00 3.06
2043 5697 9.794685 AAACAAAACAAAACAAAACAAGACAAT 57.205 22.222 0.00 0.00 0.00 2.71
2044 5698 9.626045 AAAACAAAACAAAACAAAACAAGACAA 57.374 22.222 0.00 0.00 0.00 3.18
2045 5699 9.278734 GAAAACAAAACAAAACAAAACAAGACA 57.721 25.926 0.00 0.00 0.00 3.41
2046 5700 9.278734 TGAAAACAAAACAAAACAAAACAAGAC 57.721 25.926 0.00 0.00 0.00 3.01
2084 5738 6.997655 TCTATTGCTCATATGTCGAAAGGAT 58.002 36.000 1.90 0.00 0.00 3.24
2206 5870 4.102681 CCTCCAATTCCCCGATAGTAGTTT 59.897 45.833 0.00 0.00 0.00 2.66
2216 5880 0.759346 CTACTCCCTCCAATTCCCCG 59.241 60.000 0.00 0.00 0.00 5.73
2224 5888 3.447586 CGATTCTTGAACTACTCCCTCCA 59.552 47.826 0.00 0.00 0.00 3.86
2235 5899 5.731263 GGTATGCGTAAAACGATTCTTGAAC 59.269 40.000 3.22 0.00 46.05 3.18
2238 5902 5.464965 AGGTATGCGTAAAACGATTCTTG 57.535 39.130 3.22 0.00 46.05 3.02
2239 5903 6.591062 TGTTAGGTATGCGTAAAACGATTCTT 59.409 34.615 3.22 0.00 46.05 2.52
2246 5910 5.122711 ACATGGTGTTAGGTATGCGTAAAAC 59.877 40.000 7.75 7.75 34.26 2.43
2269 5933 2.680339 GCTATGAGCTTCTTTGGACCAC 59.320 50.000 0.00 0.00 38.45 4.16
2285 5949 4.569180 CGGGTGGGCTGGGCTATG 62.569 72.222 0.00 0.00 0.00 2.23
2292 6369 1.613317 TATGAGTCACGGGTGGGCTG 61.613 60.000 0.00 0.00 0.00 4.85
2301 6378 7.525688 AATACAAATGAGTGTATGAGTCACG 57.474 36.000 0.00 0.00 42.58 4.35
2303 6380 7.985184 GGGTAATACAAATGAGTGTATGAGTCA 59.015 37.037 0.00 0.00 42.58 3.41
2324 6401 3.396276 TCCAACTCATCAAAGTGGGGTAA 59.604 43.478 0.00 0.00 40.34 2.85
2347 6424 8.830915 TTTTATTCCCATATAGGCTTTGTTGA 57.169 30.769 0.00 0.00 35.39 3.18
2364 6441 9.803315 GAAAAATAGTCACTCCCATTTTATTCC 57.197 33.333 0.00 0.00 31.97 3.01
2376 6453 9.994432 CCTATGTTGATTGAAAAATAGTCACTC 57.006 33.333 0.00 0.00 0.00 3.51
2436 6513 9.965902 AAATAATATTGGAGATAGTGGATCACC 57.034 33.333 0.00 0.00 43.66 4.02
2484 6561 0.674895 GTGCCTCCGATCAAAGCAGT 60.675 55.000 0.00 0.00 33.37 4.40
2485 6562 1.372087 GGTGCCTCCGATCAAAGCAG 61.372 60.000 0.00 0.00 33.37 4.24
2487 6564 0.960364 TTGGTGCCTCCGATCAAAGC 60.960 55.000 0.00 0.00 39.52 3.51
2508 6585 7.666623 CACTACTCCCATAATTTGGTTGTTTT 58.333 34.615 6.09 0.00 44.83 2.43
2512 6589 4.097892 GGCACTACTCCCATAATTTGGTTG 59.902 45.833 6.09 2.30 44.83 3.77
2513 6590 4.264172 TGGCACTACTCCCATAATTTGGTT 60.264 41.667 6.09 0.00 44.83 3.67
2514 6591 3.268334 TGGCACTACTCCCATAATTTGGT 59.732 43.478 6.09 0.00 44.83 3.67
2515 6592 3.632145 GTGGCACTACTCCCATAATTTGG 59.368 47.826 11.13 0.00 46.00 3.28
2517 6594 4.584638 TGTGGCACTACTCCCATAATTT 57.415 40.909 19.83 0.00 32.95 1.82
2520 6597 3.384168 AGATGTGGCACTACTCCCATAA 58.616 45.455 19.83 0.00 32.95 1.90
2521 6598 2.965831 GAGATGTGGCACTACTCCCATA 59.034 50.000 23.50 2.85 32.95 2.74
2522 6599 1.765314 GAGATGTGGCACTACTCCCAT 59.235 52.381 23.50 8.37 32.95 4.00
2523 6600 1.195115 GAGATGTGGCACTACTCCCA 58.805 55.000 23.50 4.19 0.00 4.37
2524 6601 0.103208 CGAGATGTGGCACTACTCCC 59.897 60.000 25.86 11.00 0.00 4.30
2525 6602 0.818296 ACGAGATGTGGCACTACTCC 59.182 55.000 25.86 15.34 0.00 3.85
2526 6603 1.914634 CACGAGATGTGGCACTACTC 58.085 55.000 23.83 23.83 45.21 2.59
2542 6620 8.703336 CACATATTGTAATATTGAGAGTCCACG 58.297 37.037 0.00 0.00 29.35 4.94
2545 6623 9.429359 CTCCACATATTGTAATATTGAGAGTCC 57.571 37.037 0.00 0.00 29.35 3.85
2567 6645 9.921637 GTTCCATAAATTAAATTGTGTTCTCCA 57.078 29.630 0.17 0.00 0.00 3.86
2568 6646 9.921637 TGTTCCATAAATTAAATTGTGTTCTCC 57.078 29.630 0.17 0.00 0.00 3.71
2582 6661 8.405531 CCTTATTCACGTCATGTTCCATAAATT 58.594 33.333 0.00 0.00 0.00 1.82
2583 6662 7.773224 TCCTTATTCACGTCATGTTCCATAAAT 59.227 33.333 0.00 0.00 0.00 1.40
2590 6669 6.513180 TCCTATCCTTATTCACGTCATGTTC 58.487 40.000 0.00 0.00 0.00 3.18
2596 6675 9.760077 TTTTAGATTCCTATCCTTATTCACGTC 57.240 33.333 0.00 0.00 0.00 4.34
2625 6704 1.339610 TGCGCCAAAGCTAACAACAAT 59.660 42.857 4.18 0.00 38.13 2.71
2626 6705 0.741326 TGCGCCAAAGCTAACAACAA 59.259 45.000 4.18 0.00 38.13 2.83
2629 6708 1.846541 GTTTGCGCCAAAGCTAACAA 58.153 45.000 4.18 0.00 46.60 2.83
2631 6710 0.317519 ACGTTTGCGCCAAAGCTAAC 60.318 50.000 4.18 6.29 44.92 2.34
2640 6719 1.355971 TAAGATCTGACGTTTGCGCC 58.644 50.000 4.18 0.00 42.83 6.53
2642 6721 8.601243 ATTAATTTTAAGATCTGACGTTTGCG 57.399 30.769 0.00 0.00 44.93 4.85
2686 6765 4.183101 TCTTTGGCTTTTGTGAAGCAAAG 58.817 39.130 18.64 18.64 46.40 2.77
2702 6781 1.172180 TTGTGCTTCCGCCTCTTTGG 61.172 55.000 0.00 0.00 39.35 3.28
2703 6782 0.883833 ATTGTGCTTCCGCCTCTTTG 59.116 50.000 0.00 0.00 34.43 2.77
2704 6783 2.084546 GTATTGTGCTTCCGCCTCTTT 58.915 47.619 0.00 0.00 34.43 2.52
2705 6784 1.003118 TGTATTGTGCTTCCGCCTCTT 59.997 47.619 0.00 0.00 34.43 2.85
2706 6785 0.613260 TGTATTGTGCTTCCGCCTCT 59.387 50.000 0.00 0.00 34.43 3.69
2707 6786 0.727398 GTGTATTGTGCTTCCGCCTC 59.273 55.000 0.00 0.00 34.43 4.70
2708 6787 0.324943 AGTGTATTGTGCTTCCGCCT 59.675 50.000 0.00 0.00 34.43 5.52
2709 6788 2.018542 TAGTGTATTGTGCTTCCGCC 57.981 50.000 0.00 0.00 34.43 6.13
2710 6789 3.000727 AGTTAGTGTATTGTGCTTCCGC 58.999 45.455 0.00 0.00 0.00 5.54
2711 6790 6.903883 ATAAGTTAGTGTATTGTGCTTCCG 57.096 37.500 0.00 0.00 0.00 4.30
2712 6791 7.968405 CCAAATAAGTTAGTGTATTGTGCTTCC 59.032 37.037 0.00 0.00 0.00 3.46
2713 6792 8.512138 ACCAAATAAGTTAGTGTATTGTGCTTC 58.488 33.333 0.00 0.00 0.00 3.86
2714 6793 8.404107 ACCAAATAAGTTAGTGTATTGTGCTT 57.596 30.769 0.00 0.00 0.00 3.91
2715 6794 7.996098 ACCAAATAAGTTAGTGTATTGTGCT 57.004 32.000 0.00 0.00 0.00 4.40
2716 6795 8.079809 ACAACCAAATAAGTTAGTGTATTGTGC 58.920 33.333 11.56 0.00 0.00 4.57
2717 6796 9.607285 GACAACCAAATAAGTTAGTGTATTGTG 57.393 33.333 14.59 0.00 0.00 3.33
2718 6797 8.789762 GGACAACCAAATAAGTTAGTGTATTGT 58.210 33.333 11.89 11.89 35.97 2.71
2719 6798 8.788806 TGGACAACCAAATAAGTTAGTGTATTG 58.211 33.333 0.00 0.49 43.91 1.90
2720 6799 8.927675 TGGACAACCAAATAAGTTAGTGTATT 57.072 30.769 0.00 0.00 43.91 1.89
2741 6820 1.917872 TGGTAATTGGCCTTGTGGAC 58.082 50.000 3.32 0.00 43.36 4.02
2814 6943 6.146184 TCTCTAAGCACTCTTCGACAAATTTG 59.854 38.462 16.67 16.67 33.85 2.32
2818 6947 4.848562 TCTCTAAGCACTCTTCGACAAA 57.151 40.909 0.00 0.00 33.85 2.83
2819 6948 4.848562 TTCTCTAAGCACTCTTCGACAA 57.151 40.909 0.00 0.00 33.85 3.18
2908 7037 6.660521 AGCATGTAGAGAACCATTTTCATGAA 59.339 34.615 3.38 3.38 35.07 2.57
2963 7093 9.994432 GAATCTCGATATGAATTCAGTTTTTGT 57.006 29.630 14.54 0.00 30.77 2.83
2983 7117 7.611213 TTCACTATTTCCCGAAAAGAATCTC 57.389 36.000 0.00 0.00 33.56 2.75
2994 7128 8.911662 CATACTTTTTGTTTTCACTATTTCCCG 58.088 33.333 0.00 0.00 0.00 5.14
3010 7147 9.410556 CTTCATTTGGTTAGTCCATACTTTTTG 57.589 33.333 0.00 0.00 46.60 2.44
3016 7153 6.128007 CCACACTTCATTTGGTTAGTCCATAC 60.128 42.308 0.00 0.00 46.60 2.39
3075 7213 0.610232 CTTGGCCTGGAAGTCTTGGG 60.610 60.000 3.32 0.00 0.00 4.12
3090 7228 9.892130 ATTTACTAAGTAAGGAGTCATTCTTGG 57.108 33.333 0.00 2.94 29.41 3.61
3101 7239 7.490657 TGAAGAGCCATTTACTAAGTAAGGA 57.509 36.000 0.00 0.00 29.41 3.36
3154 7292 9.469807 CCTAGATACTTCTTGCATAGTAAAGTG 57.530 37.037 7.63 1.82 32.71 3.16
3158 7296 6.553476 TGGCCTAGATACTTCTTGCATAGTAA 59.447 38.462 3.32 0.00 32.84 2.24
3164 7302 2.435805 CCTGGCCTAGATACTTCTTGCA 59.564 50.000 3.32 0.00 32.84 4.08
3185 7323 3.139077 AGAATGTTCGGGACACAACTTC 58.861 45.455 0.00 0.00 42.04 3.01
3198 7336 3.274288 CCACCAGGCTTCTAGAATGTTC 58.726 50.000 5.44 0.00 0.00 3.18
3199 7337 2.644798 ACCACCAGGCTTCTAGAATGTT 59.355 45.455 5.44 0.00 39.06 2.71
3200 7338 2.269940 ACCACCAGGCTTCTAGAATGT 58.730 47.619 5.44 0.00 39.06 2.71
3212 7350 6.406849 CCAACCAATAAATATGAACCACCAGG 60.407 42.308 0.00 0.00 42.21 4.45
3238 7377 4.853924 ATGTTTCTTTGTTGCCACTAGG 57.146 40.909 0.00 0.00 38.23 3.02
3266 7405 7.451255 TCCTTTATTCTGAAAGATCCAAAGCAA 59.549 33.333 0.00 0.00 46.36 3.91
3283 7422 7.040473 TGTATCTCGGAGTCTTCCTTTATTC 57.960 40.000 4.69 0.00 41.67 1.75
3284 7423 7.507616 AGATGTATCTCGGAGTCTTCCTTTATT 59.492 37.037 4.69 0.00 41.67 1.40
3309 7448 4.952957 TCCTAGTCATTTGTCCTCTCAGAG 59.047 45.833 0.00 0.00 0.00 3.35
3326 7465 2.233922 CCGGAGTGTGATGTTTCCTAGT 59.766 50.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.