Multiple sequence alignment - TraesCS3B01G456400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G456400 | chr3B | 100.000 | 2867 | 0 | 0 | 1 | 2867 | 697912063 | 697909197 | 0.000000e+00 | 5295 |
1 | TraesCS3B01G456400 | chr3A | 88.802 | 1795 | 116 | 43 | 667 | 2426 | 662413954 | 662412210 | 0.000000e+00 | 2122 |
2 | TraesCS3B01G456400 | chr3A | 87.500 | 240 | 16 | 6 | 2632 | 2867 | 662411092 | 662410863 | 6.090000e-67 | 265 |
3 | TraesCS3B01G456400 | chr3D | 94.204 | 1225 | 42 | 12 | 667 | 1866 | 527675911 | 527674691 | 0.000000e+00 | 1842 |
4 | TraesCS3B01G456400 | chr3D | 82.770 | 592 | 51 | 26 | 1929 | 2507 | 527674669 | 527674116 | 5.560000e-132 | 481 |
5 | TraesCS3B01G456400 | chr3D | 80.882 | 612 | 60 | 26 | 6 | 590 | 527676518 | 527675937 | 2.040000e-116 | 429 |
6 | TraesCS3B01G456400 | chr3D | 89.259 | 270 | 11 | 9 | 2612 | 2867 | 527674138 | 527673873 | 3.560000e-84 | 322 |
7 | TraesCS3B01G456400 | chr4B | 91.463 | 82 | 7 | 0 | 2509 | 2590 | 568662298 | 568662217 | 2.330000e-21 | 113 |
8 | TraesCS3B01G456400 | chr5B | 91.358 | 81 | 7 | 0 | 2510 | 2590 | 360936599 | 360936519 | 8.400000e-21 | 111 |
9 | TraesCS3B01G456400 | chr5B | 91.358 | 81 | 7 | 0 | 2509 | 2589 | 529277066 | 529277146 | 8.400000e-21 | 111 |
10 | TraesCS3B01G456400 | chr2B | 90.244 | 82 | 8 | 0 | 2509 | 2590 | 736908209 | 736908290 | 1.090000e-19 | 108 |
11 | TraesCS3B01G456400 | chr2B | 89.157 | 83 | 9 | 0 | 2508 | 2590 | 245302046 | 245301964 | 1.410000e-18 | 104 |
12 | TraesCS3B01G456400 | chr2B | 86.170 | 94 | 10 | 3 | 2502 | 2595 | 468551196 | 468551106 | 6.540000e-17 | 99 |
13 | TraesCS3B01G456400 | chr6B | 87.912 | 91 | 9 | 2 | 2500 | 2590 | 561645366 | 561645278 | 3.910000e-19 | 106 |
14 | TraesCS3B01G456400 | chr2A | 90.123 | 81 | 8 | 0 | 2510 | 2590 | 768200847 | 768200767 | 3.910000e-19 | 106 |
15 | TraesCS3B01G456400 | chrUn | 87.356 | 87 | 11 | 0 | 2509 | 2595 | 31719449 | 31719363 | 1.820000e-17 | 100 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G456400 | chr3B | 697909197 | 697912063 | 2866 | True | 5295.0 | 5295 | 100.00000 | 1 | 2867 | 1 | chr3B.!!$R1 | 2866 |
1 | TraesCS3B01G456400 | chr3A | 662410863 | 662413954 | 3091 | True | 1193.5 | 2122 | 88.15100 | 667 | 2867 | 2 | chr3A.!!$R1 | 2200 |
2 | TraesCS3B01G456400 | chr3D | 527673873 | 527676518 | 2645 | True | 768.5 | 1842 | 86.77875 | 6 | 2867 | 4 | chr3D.!!$R1 | 2861 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
355 | 366 | 0.032912 | TACCCCCACTGCTATCACGA | 60.033 | 55.0 | 0.0 | 0.0 | 0.0 | 4.35 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2058 | 2131 | 0.040067 | GCTGCTTGAAAGGTTGACGG | 60.04 | 55.0 | 0.0 | 0.0 | 0.0 | 4.79 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
87 | 95 | 1.096416 | CTCGCCTCGGGTATATCCTC | 58.904 | 60.000 | 0.00 | 0.00 | 36.25 | 3.71 |
88 | 96 | 0.323178 | TCGCCTCGGGTATATCCTCC | 60.323 | 60.000 | 0.00 | 0.00 | 36.25 | 4.30 |
89 | 97 | 0.323542 | CGCCTCGGGTATATCCTCCT | 60.324 | 60.000 | 0.00 | 0.00 | 36.25 | 3.69 |
90 | 98 | 1.187087 | GCCTCGGGTATATCCTCCTG | 58.813 | 60.000 | 0.00 | 0.00 | 36.25 | 3.86 |
91 | 99 | 1.187087 | CCTCGGGTATATCCTCCTGC | 58.813 | 60.000 | 0.00 | 0.00 | 36.25 | 4.85 |
92 | 100 | 1.187087 | CTCGGGTATATCCTCCTGCC | 58.813 | 60.000 | 0.00 | 0.00 | 36.25 | 4.85 |
93 | 101 | 0.784495 | TCGGGTATATCCTCCTGCCT | 59.216 | 55.000 | 0.00 | 0.00 | 36.25 | 4.75 |
94 | 102 | 1.187087 | CGGGTATATCCTCCTGCCTC | 58.813 | 60.000 | 0.00 | 0.00 | 36.25 | 4.70 |
95 | 103 | 1.574263 | GGGTATATCCTCCTGCCTCC | 58.426 | 60.000 | 0.00 | 0.00 | 36.25 | 4.30 |
96 | 104 | 1.574263 | GGTATATCCTCCTGCCTCCC | 58.426 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
97 | 105 | 1.079658 | GGTATATCCTCCTGCCTCCCT | 59.920 | 57.143 | 0.00 | 0.00 | 0.00 | 4.20 |
121 | 129 | 1.221840 | CTGCTACGTTGATGCCCCT | 59.778 | 57.895 | 0.00 | 0.00 | 0.00 | 4.79 |
140 | 148 | 3.510459 | CCTCCCCAACTCCAATTCTTTT | 58.490 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
141 | 149 | 3.511540 | CCTCCCCAACTCCAATTCTTTTC | 59.488 | 47.826 | 0.00 | 0.00 | 0.00 | 2.29 |
148 | 156 | 2.814336 | ACTCCAATTCTTTTCAGGACGC | 59.186 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
151 | 159 | 1.069296 | CAATTCTTTTCAGGACGCGCA | 60.069 | 47.619 | 5.73 | 0.00 | 0.00 | 6.09 |
153 | 161 | 0.812014 | TTCTTTTCAGGACGCGCACA | 60.812 | 50.000 | 5.73 | 0.00 | 0.00 | 4.57 |
171 | 182 | 2.740055 | GCACAGGGCACTCACTCG | 60.740 | 66.667 | 0.00 | 0.00 | 43.97 | 4.18 |
172 | 183 | 2.737180 | CACAGGGCACTCACTCGT | 59.263 | 61.111 | 0.00 | 0.00 | 0.00 | 4.18 |
173 | 184 | 1.665916 | CACAGGGCACTCACTCGTG | 60.666 | 63.158 | 0.00 | 0.00 | 37.94 | 4.35 |
174 | 185 | 1.832608 | ACAGGGCACTCACTCGTGA | 60.833 | 57.895 | 0.00 | 0.00 | 37.06 | 4.35 |
175 | 186 | 1.367471 | CAGGGCACTCACTCGTGAA | 59.633 | 57.895 | 1.02 | 0.00 | 39.39 | 3.18 |
189 | 200 | 4.666176 | CACTCGTGAATGAAAGTTTCAACG | 59.334 | 41.667 | 25.06 | 25.06 | 43.95 | 4.10 |
192 | 203 | 4.025229 | TCGTGAATGAAAGTTTCAACGAGG | 60.025 | 41.667 | 27.69 | 17.48 | 43.95 | 4.63 |
220 | 231 | 4.779475 | CCTAATCGGCCAGCGAAT | 57.221 | 55.556 | 2.24 | 0.00 | 0.00 | 3.34 |
221 | 232 | 3.906660 | CCTAATCGGCCAGCGAATA | 57.093 | 52.632 | 2.24 | 0.00 | 0.00 | 1.75 |
222 | 233 | 2.386661 | CCTAATCGGCCAGCGAATAT | 57.613 | 50.000 | 2.24 | 0.00 | 0.00 | 1.28 |
223 | 234 | 2.002586 | CCTAATCGGCCAGCGAATATG | 58.997 | 52.381 | 2.24 | 0.00 | 0.00 | 1.78 |
224 | 235 | 1.394917 | CTAATCGGCCAGCGAATATGC | 59.605 | 52.381 | 2.24 | 0.00 | 0.00 | 3.14 |
225 | 236 | 1.237285 | AATCGGCCAGCGAATATGCC | 61.237 | 55.000 | 2.24 | 0.00 | 40.54 | 4.40 |
226 | 237 | 2.395988 | ATCGGCCAGCGAATATGCCA | 62.396 | 55.000 | 2.24 | 0.00 | 44.22 | 4.92 |
227 | 238 | 1.968017 | CGGCCAGCGAATATGCCAT | 60.968 | 57.895 | 2.24 | 0.00 | 44.22 | 4.40 |
228 | 239 | 1.582968 | GGCCAGCGAATATGCCATG | 59.417 | 57.895 | 0.00 | 0.00 | 43.46 | 3.66 |
229 | 240 | 1.080974 | GCCAGCGAATATGCCATGC | 60.081 | 57.895 | 0.00 | 0.00 | 34.65 | 4.06 |
230 | 241 | 1.208358 | CCAGCGAATATGCCATGCG | 59.792 | 57.895 | 0.00 | 0.00 | 34.65 | 4.73 |
231 | 242 | 1.229975 | CCAGCGAATATGCCATGCGA | 61.230 | 55.000 | 0.10 | 0.00 | 34.65 | 5.10 |
232 | 243 | 0.800631 | CAGCGAATATGCCATGCGAT | 59.199 | 50.000 | 0.10 | 0.00 | 34.65 | 4.58 |
233 | 244 | 2.001872 | CAGCGAATATGCCATGCGATA | 58.998 | 47.619 | 0.10 | 0.00 | 34.65 | 2.92 |
236 | 247 | 2.222886 | GCGAATATGCCATGCGATAGTG | 60.223 | 50.000 | 0.10 | 0.00 | 39.35 | 2.74 |
240 | 251 | 1.168407 | ATGCCATGCGATAGTGCCAC | 61.168 | 55.000 | 0.00 | 0.00 | 39.35 | 5.01 |
241 | 252 | 1.819208 | GCCATGCGATAGTGCCACA | 60.819 | 57.895 | 0.00 | 0.00 | 39.35 | 4.17 |
253 | 264 | 4.922026 | GCCACACCGTGAACCCGT | 62.922 | 66.667 | 5.28 | 0.00 | 35.23 | 5.28 |
256 | 267 | 2.279650 | ACACCGTGAACCCGTTCG | 60.280 | 61.111 | 5.28 | 0.00 | 42.28 | 3.95 |
257 | 268 | 3.708734 | CACCGTGAACCCGTTCGC | 61.709 | 66.667 | 10.43 | 10.43 | 44.25 | 4.70 |
340 | 351 | 5.473504 | ACTGATAATCCGATGCAAATTACCC | 59.526 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
355 | 366 | 0.032912 | TACCCCCACTGCTATCACGA | 60.033 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
357 | 368 | 1.330655 | CCCCCACTGCTATCACGACT | 61.331 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
389 | 400 | 2.052157 | GATCGTTATCGCAGCAGTACC | 58.948 | 52.381 | 0.00 | 0.00 | 36.96 | 3.34 |
391 | 402 | 1.407618 | TCGTTATCGCAGCAGTACCAT | 59.592 | 47.619 | 0.00 | 0.00 | 36.96 | 3.55 |
392 | 403 | 1.522676 | CGTTATCGCAGCAGTACCATG | 59.477 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
402 | 417 | 2.031157 | AGCAGTACCATGTTTTCAACGC | 60.031 | 45.455 | 0.00 | 0.00 | 0.00 | 4.84 |
403 | 418 | 2.920647 | GCAGTACCATGTTTTCAACGCC | 60.921 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
440 | 455 | 4.936823 | ACGTCGCGTTCGTTGGCT | 62.937 | 61.111 | 21.14 | 4.16 | 36.35 | 4.75 |
442 | 457 | 4.117372 | GTCGCGTTCGTTGGCTCG | 62.117 | 66.667 | 5.77 | 0.00 | 36.96 | 5.03 |
459 | 474 | 0.528924 | TCGATCGGATCCACGTGTTT | 59.471 | 50.000 | 16.41 | 0.29 | 34.94 | 2.83 |
461 | 476 | 2.359848 | TCGATCGGATCCACGTGTTTAT | 59.640 | 45.455 | 16.41 | 4.87 | 34.94 | 1.40 |
462 | 477 | 2.471370 | CGATCGGATCCACGTGTTTATG | 59.529 | 50.000 | 15.65 | 0.00 | 34.94 | 1.90 |
463 | 478 | 3.713288 | GATCGGATCCACGTGTTTATGA | 58.287 | 45.455 | 15.65 | 4.23 | 34.94 | 2.15 |
464 | 479 | 3.812156 | TCGGATCCACGTGTTTATGAT | 57.188 | 42.857 | 15.65 | 9.35 | 34.94 | 2.45 |
465 | 480 | 4.922471 | TCGGATCCACGTGTTTATGATA | 57.078 | 40.909 | 15.65 | 0.00 | 34.94 | 2.15 |
466 | 481 | 5.462530 | TCGGATCCACGTGTTTATGATAT | 57.537 | 39.130 | 15.65 | 0.00 | 34.94 | 1.63 |
467 | 482 | 5.466819 | TCGGATCCACGTGTTTATGATATC | 58.533 | 41.667 | 15.65 | 0.00 | 34.94 | 1.63 |
468 | 483 | 5.010213 | TCGGATCCACGTGTTTATGATATCA | 59.990 | 40.000 | 15.65 | 8.10 | 34.94 | 2.15 |
469 | 484 | 5.869344 | CGGATCCACGTGTTTATGATATCAT | 59.131 | 40.000 | 21.50 | 21.50 | 40.22 | 2.45 |
470 | 485 | 6.183360 | CGGATCCACGTGTTTATGATATCATG | 60.183 | 42.308 | 25.44 | 11.75 | 37.15 | 3.07 |
471 | 486 | 6.873605 | GGATCCACGTGTTTATGATATCATGA | 59.126 | 38.462 | 25.44 | 16.36 | 37.15 | 3.07 |
491 | 506 | 2.821366 | CCACGGCTCTGGCATGTC | 60.821 | 66.667 | 0.00 | 0.00 | 40.87 | 3.06 |
492 | 507 | 2.821366 | CACGGCTCTGGCATGTCC | 60.821 | 66.667 | 0.00 | 0.00 | 40.87 | 4.02 |
493 | 508 | 3.321648 | ACGGCTCTGGCATGTCCA | 61.322 | 61.111 | 8.33 | 8.33 | 44.18 | 4.02 |
511 | 545 | 2.203451 | GAGCATGGATGGGGCTGG | 60.203 | 66.667 | 0.00 | 0.00 | 38.15 | 4.85 |
514 | 548 | 2.129785 | GCATGGATGGGGCTGGAAC | 61.130 | 63.158 | 0.00 | 0.00 | 0.00 | 3.62 |
516 | 550 | 0.105862 | CATGGATGGGGCTGGAACAT | 60.106 | 55.000 | 0.00 | 0.00 | 38.20 | 2.71 |
517 | 551 | 0.105862 | ATGGATGGGGCTGGAACATG | 60.106 | 55.000 | 0.00 | 0.00 | 38.20 | 3.21 |
519 | 553 | 0.466922 | GGATGGGGCTGGAACATGAG | 60.467 | 60.000 | 0.00 | 0.00 | 38.20 | 2.90 |
521 | 555 | 1.144503 | GATGGGGCTGGAACATGAGAT | 59.855 | 52.381 | 0.00 | 0.00 | 38.20 | 2.75 |
529 | 564 | 3.181467 | GCTGGAACATGAGATGAGCTACT | 60.181 | 47.826 | 0.00 | 0.00 | 38.20 | 2.57 |
544 | 579 | 5.947443 | TGAGCTACTAGTAAACGTTTCTCC | 58.053 | 41.667 | 18.42 | 6.97 | 0.00 | 3.71 |
546 | 581 | 6.208204 | TGAGCTACTAGTAAACGTTTCTCCTT | 59.792 | 38.462 | 18.42 | 3.31 | 0.00 | 3.36 |
563 | 598 | 3.270027 | TCCTTAACATTGTCAGCCATCG | 58.730 | 45.455 | 0.00 | 0.00 | 0.00 | 3.84 |
570 | 605 | 1.737838 | TTGTCAGCCATCGGTCAATC | 58.262 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
571 | 606 | 0.612744 | TGTCAGCCATCGGTCAATCA | 59.387 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
574 | 609 | 0.734889 | CAGCCATCGGTCAATCAACC | 59.265 | 55.000 | 0.00 | 0.00 | 35.86 | 3.77 |
580 | 615 | 2.350057 | TCGGTCAATCAACCCACAAA | 57.650 | 45.000 | 0.00 | 0.00 | 35.79 | 2.83 |
583 | 618 | 2.099921 | CGGTCAATCAACCCACAAACAA | 59.900 | 45.455 | 0.00 | 0.00 | 35.79 | 2.83 |
594 | 629 | 1.826327 | CACAAACAAACGTGGAGCTG | 58.174 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
595 | 630 | 0.738389 | ACAAACAAACGTGGAGCTGG | 59.262 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
596 | 631 | 0.738389 | CAAACAAACGTGGAGCTGGT | 59.262 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
597 | 632 | 1.134175 | CAAACAAACGTGGAGCTGGTT | 59.866 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
598 | 633 | 2.335316 | AACAAACGTGGAGCTGGTTA | 57.665 | 45.000 | 0.00 | 0.00 | 0.00 | 2.85 |
599 | 634 | 2.335316 | ACAAACGTGGAGCTGGTTAA | 57.665 | 45.000 | 0.00 | 0.00 | 0.00 | 2.01 |
600 | 635 | 2.858745 | ACAAACGTGGAGCTGGTTAAT | 58.141 | 42.857 | 0.00 | 0.00 | 0.00 | 1.40 |
601 | 636 | 2.812011 | ACAAACGTGGAGCTGGTTAATC | 59.188 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
602 | 637 | 2.109425 | AACGTGGAGCTGGTTAATCC | 57.891 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
603 | 638 | 0.981183 | ACGTGGAGCTGGTTAATCCA | 59.019 | 50.000 | 0.00 | 0.00 | 45.01 | 3.41 |
610 | 645 | 3.883462 | TGGTTAATCCAGTGCGCG | 58.117 | 55.556 | 0.00 | 0.00 | 41.93 | 6.86 |
611 | 646 | 1.743623 | TGGTTAATCCAGTGCGCGG | 60.744 | 57.895 | 8.83 | 0.00 | 41.93 | 6.46 |
612 | 647 | 2.469516 | GGTTAATCCAGTGCGCGGG | 61.470 | 63.158 | 10.51 | 10.51 | 35.97 | 6.13 |
613 | 648 | 2.822255 | TTAATCCAGTGCGCGGGC | 60.822 | 61.111 | 18.81 | 18.81 | 40.52 | 6.13 |
633 | 668 | 2.869233 | GTGGCATGGCACGATTAAAT | 57.131 | 45.000 | 33.16 | 0.00 | 0.00 | 1.40 |
645 | 680 | 6.764085 | TGGCACGATTAAATTAGCTTAGCTTA | 59.236 | 34.615 | 13.44 | 3.00 | 40.44 | 3.09 |
647 | 682 | 6.792726 | GCACGATTAAATTAGCTTAGCTTAGC | 59.207 | 38.462 | 16.83 | 16.83 | 40.44 | 3.09 |
661 | 696 | 2.347731 | GCTTAGCTTAGCTTTGGACGT | 58.652 | 47.619 | 17.24 | 0.00 | 40.44 | 4.34 |
662 | 697 | 2.094417 | GCTTAGCTTAGCTTTGGACGTG | 59.906 | 50.000 | 17.24 | 0.00 | 40.44 | 4.49 |
663 | 698 | 3.585862 | CTTAGCTTAGCTTTGGACGTGA | 58.414 | 45.455 | 13.44 | 0.00 | 40.44 | 4.35 |
664 | 699 | 2.086054 | AGCTTAGCTTTGGACGTGAG | 57.914 | 50.000 | 0.00 | 0.00 | 33.89 | 3.51 |
665 | 700 | 1.344763 | AGCTTAGCTTTGGACGTGAGT | 59.655 | 47.619 | 0.00 | 0.00 | 42.37 | 3.41 |
751 | 801 | 0.826715 | TCCAGGGCTCAATTCTCTCG | 59.173 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
792 | 842 | 6.947733 | AGAAGACAACAATGGTAATCAATCCA | 59.052 | 34.615 | 0.00 | 0.00 | 38.14 | 3.41 |
793 | 843 | 7.451255 | AGAAGACAACAATGGTAATCAATCCAA | 59.549 | 33.333 | 0.00 | 0.00 | 37.27 | 3.53 |
920 | 970 | 4.988598 | CCGCACACCGCAACCTCT | 62.989 | 66.667 | 0.00 | 0.00 | 42.60 | 3.69 |
924 | 974 | 1.912371 | GCACACCGCAACCTCTAAGC | 61.912 | 60.000 | 0.00 | 0.00 | 41.79 | 3.09 |
937 | 987 | 2.480419 | CCTCTAAGCTCAAACCACAACG | 59.520 | 50.000 | 0.00 | 0.00 | 0.00 | 4.10 |
941 | 991 | 2.712539 | CTCAAACCACAACGCGCA | 59.287 | 55.556 | 5.73 | 0.00 | 0.00 | 6.09 |
942 | 992 | 1.654137 | CTCAAACCACAACGCGCAC | 60.654 | 57.895 | 5.73 | 0.00 | 0.00 | 5.34 |
1020 | 1076 | 2.890474 | GCCGTGTACATCCGCCTG | 60.890 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
1753 | 1821 | 1.455773 | TCGCCGTCCTCCTCATCAT | 60.456 | 57.895 | 0.00 | 0.00 | 0.00 | 2.45 |
1866 | 1934 | 1.143183 | GGCGGCGAGGATCAAGTAA | 59.857 | 57.895 | 12.98 | 0.00 | 33.17 | 2.24 |
1867 | 1935 | 0.461339 | GGCGGCGAGGATCAAGTAAA | 60.461 | 55.000 | 12.98 | 0.00 | 33.17 | 2.01 |
1868 | 1936 | 1.365699 | GCGGCGAGGATCAAGTAAAA | 58.634 | 50.000 | 12.98 | 0.00 | 33.17 | 1.52 |
1896 | 1964 | 2.585247 | ACCGCTAATTCTCCGCGC | 60.585 | 61.111 | 0.00 | 0.00 | 45.02 | 6.86 |
1897 | 1965 | 3.692367 | CCGCTAATTCTCCGCGCG | 61.692 | 66.667 | 25.67 | 25.67 | 45.02 | 6.86 |
1899 | 1967 | 4.341240 | GCTAATTCTCCGCGCGCG | 62.341 | 66.667 | 43.73 | 43.73 | 39.44 | 6.86 |
1900 | 1968 | 2.954868 | CTAATTCTCCGCGCGCGT | 60.955 | 61.111 | 45.51 | 31.22 | 37.81 | 6.01 |
1901 | 1969 | 2.917656 | CTAATTCTCCGCGCGCGTC | 61.918 | 63.158 | 45.51 | 21.85 | 37.81 | 5.19 |
1902 | 1970 | 3.405592 | TAATTCTCCGCGCGCGTCT | 62.406 | 57.895 | 45.51 | 26.72 | 37.81 | 4.18 |
1916 | 1984 | 1.202348 | CGCGTCTCTGGAAGATGTCAT | 60.202 | 52.381 | 0.00 | 0.00 | 45.62 | 3.06 |
1917 | 1985 | 2.033424 | CGCGTCTCTGGAAGATGTCATA | 59.967 | 50.000 | 0.00 | 0.00 | 45.62 | 2.15 |
1918 | 1986 | 3.637432 | GCGTCTCTGGAAGATGTCATAG | 58.363 | 50.000 | 0.00 | 0.00 | 45.62 | 2.23 |
1919 | 1987 | 3.067461 | GCGTCTCTGGAAGATGTCATAGT | 59.933 | 47.826 | 0.00 | 0.00 | 45.62 | 2.12 |
1920 | 1988 | 4.791411 | GCGTCTCTGGAAGATGTCATAGTC | 60.791 | 50.000 | 0.00 | 0.00 | 45.62 | 2.59 |
1921 | 1989 | 4.578516 | CGTCTCTGGAAGATGTCATAGTCT | 59.421 | 45.833 | 0.00 | 0.00 | 45.62 | 3.24 |
1922 | 1990 | 5.505489 | CGTCTCTGGAAGATGTCATAGTCTG | 60.505 | 48.000 | 0.00 | 0.00 | 45.62 | 3.51 |
1923 | 1991 | 5.592282 | GTCTCTGGAAGATGTCATAGTCTGA | 59.408 | 44.000 | 0.00 | 0.00 | 45.62 | 3.27 |
1924 | 1992 | 6.265196 | GTCTCTGGAAGATGTCATAGTCTGAT | 59.735 | 42.308 | 0.00 | 0.00 | 45.62 | 2.90 |
1925 | 1993 | 7.446931 | GTCTCTGGAAGATGTCATAGTCTGATA | 59.553 | 40.741 | 0.00 | 0.00 | 45.62 | 2.15 |
1926 | 1994 | 8.001292 | TCTCTGGAAGATGTCATAGTCTGATAA | 58.999 | 37.037 | 0.00 | 0.00 | 45.62 | 1.75 |
1927 | 1995 | 8.175925 | TCTGGAAGATGTCATAGTCTGATAAG | 57.824 | 38.462 | 0.00 | 0.00 | 38.67 | 1.73 |
1950 | 2018 | 7.848223 | AGTAGATGTAGAGAGATGATCGATG | 57.152 | 40.000 | 0.54 | 0.00 | 0.00 | 3.84 |
1955 | 2023 | 6.311055 | TGTAGAGAGATGATCGATGAGTTG | 57.689 | 41.667 | 0.54 | 0.00 | 0.00 | 3.16 |
1999 | 2068 | 9.961266 | GTTTTTGTACAAACATTTTTGGTCTAC | 57.039 | 29.630 | 20.43 | 3.66 | 45.65 | 2.59 |
2000 | 2069 | 8.705048 | TTTTGTACAAACATTTTTGGTCTACC | 57.295 | 30.769 | 20.43 | 0.00 | 45.65 | 3.18 |
2002 | 2071 | 8.749026 | TTGTACAAACATTTTTGGTCTACCTA | 57.251 | 30.769 | 5.64 | 0.00 | 45.65 | 3.08 |
2003 | 2072 | 8.385898 | TGTACAAACATTTTTGGTCTACCTAG | 57.614 | 34.615 | 9.06 | 0.00 | 45.65 | 3.02 |
2004 | 2073 | 8.212312 | TGTACAAACATTTTTGGTCTACCTAGA | 58.788 | 33.333 | 9.06 | 0.00 | 45.65 | 2.43 |
2035 | 2108 | 2.607499 | AGCAAATTGTTGGTCCATCCA | 58.393 | 42.857 | 0.00 | 0.00 | 41.63 | 3.41 |
2058 | 2131 | 3.549423 | CCATCCACATGCATGATCGAAAC | 60.549 | 47.826 | 32.75 | 0.00 | 0.00 | 2.78 |
2069 | 2142 | 2.841215 | TGATCGAAACCGTCAACCTTT | 58.159 | 42.857 | 0.00 | 0.00 | 0.00 | 3.11 |
2070 | 2143 | 2.803956 | TGATCGAAACCGTCAACCTTTC | 59.196 | 45.455 | 0.00 | 0.00 | 0.00 | 2.62 |
2107 | 2182 | 6.511767 | GCACGATTAAACTATGGATCTTGGTG | 60.512 | 42.308 | 0.00 | 0.00 | 0.00 | 4.17 |
2133 | 2208 | 0.525761 | AAACATAAAGGCGTGCGCAT | 59.474 | 45.000 | 15.91 | 8.56 | 44.11 | 4.73 |
2135 | 2210 | 1.374560 | ACATAAAGGCGTGCGCATAA | 58.625 | 45.000 | 15.91 | 3.94 | 44.11 | 1.90 |
2136 | 2211 | 1.330521 | ACATAAAGGCGTGCGCATAAG | 59.669 | 47.619 | 15.91 | 9.94 | 44.11 | 1.73 |
2137 | 2212 | 1.597195 | CATAAAGGCGTGCGCATAAGA | 59.403 | 47.619 | 15.91 | 0.00 | 44.11 | 2.10 |
2139 | 2214 | 1.094785 | AAAGGCGTGCGCATAAGATT | 58.905 | 45.000 | 15.91 | 3.93 | 44.11 | 2.40 |
2140 | 2215 | 1.094785 | AAGGCGTGCGCATAAGATTT | 58.905 | 45.000 | 15.91 | 0.83 | 44.11 | 2.17 |
2141 | 2216 | 1.948104 | AGGCGTGCGCATAAGATTTA | 58.052 | 45.000 | 15.91 | 0.00 | 44.11 | 1.40 |
2142 | 2217 | 2.285083 | AGGCGTGCGCATAAGATTTAA | 58.715 | 42.857 | 15.91 | 0.00 | 44.11 | 1.52 |
2143 | 2218 | 2.878406 | AGGCGTGCGCATAAGATTTAAT | 59.122 | 40.909 | 15.91 | 0.00 | 44.11 | 1.40 |
2144 | 2219 | 4.062293 | AGGCGTGCGCATAAGATTTAATA | 58.938 | 39.130 | 15.91 | 0.00 | 44.11 | 0.98 |
2145 | 2220 | 4.152402 | AGGCGTGCGCATAAGATTTAATAG | 59.848 | 41.667 | 15.91 | 0.00 | 44.11 | 1.73 |
2243 | 2322 | 2.494059 | CGGATTAGCATGGGTCGAATT | 58.506 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
2245 | 2324 | 3.432252 | CGGATTAGCATGGGTCGAATTAC | 59.568 | 47.826 | 0.00 | 0.00 | 0.00 | 1.89 |
2262 | 2341 | 8.117988 | GTCGAATTACGGCATTACTTTTATCAA | 58.882 | 33.333 | 0.00 | 0.00 | 46.56 | 2.57 |
2339 | 2425 | 6.432783 | ACCAAGCAAGCAACATATGTTTAGTA | 59.567 | 34.615 | 18.50 | 0.00 | 35.83 | 1.82 |
2364 | 2450 | 1.134788 | CCTAAACGAATCAGGCGAGGT | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2376 | 2462 | 1.299976 | GCGAGGTGGAATTCTGGGT | 59.700 | 57.895 | 5.23 | 0.00 | 0.00 | 4.51 |
2390 | 2476 | 4.819105 | TTCTGGGTGTGATCTTTCGTAT | 57.181 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
2402 | 2488 | 8.539674 | TGTGATCTTTCGTATGATATTTTGTCG | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
2403 | 2489 | 7.527516 | GTGATCTTTCGTATGATATTTTGTCGC | 59.472 | 37.037 | 0.00 | 0.00 | 0.00 | 5.19 |
2404 | 2490 | 6.281848 | TCTTTCGTATGATATTTTGTCGCC | 57.718 | 37.500 | 0.00 | 0.00 | 0.00 | 5.54 |
2424 | 2510 | 2.358957 | CGCAAGGATCCTGATGAAACA | 58.641 | 47.619 | 17.02 | 0.00 | 0.00 | 2.83 |
2425 | 2511 | 2.096496 | CGCAAGGATCCTGATGAAACAC | 59.904 | 50.000 | 17.02 | 0.00 | 0.00 | 3.32 |
2428 | 2514 | 2.996631 | AGGATCCTGATGAAACACTGC | 58.003 | 47.619 | 15.29 | 0.00 | 0.00 | 4.40 |
2430 | 2516 | 2.019984 | GATCCTGATGAAACACTGCCC | 58.980 | 52.381 | 0.00 | 0.00 | 0.00 | 5.36 |
2432 | 2518 | 1.003580 | TCCTGATGAAACACTGCCCTC | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
2433 | 2519 | 1.271543 | CCTGATGAAACACTGCCCTCA | 60.272 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2434 | 2520 | 2.507484 | CTGATGAAACACTGCCCTCAA | 58.493 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
2438 | 2933 | 0.178990 | GAAACACTGCCCTCAACCCT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
2446 | 2941 | 1.394151 | CCCTCAACCCTCCTCCTCT | 59.606 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
2452 | 2947 | 1.287739 | CAACCCTCCTCCTCTCTCTCT | 59.712 | 57.143 | 0.00 | 0.00 | 0.00 | 3.10 |
2454 | 2949 | 1.275002 | ACCCTCCTCCTCTCTCTCTCT | 60.275 | 57.143 | 0.00 | 0.00 | 0.00 | 3.10 |
2455 | 2950 | 1.852965 | CCCTCCTCCTCTCTCTCTCTT | 59.147 | 57.143 | 0.00 | 0.00 | 0.00 | 2.85 |
2456 | 2951 | 2.423373 | CCCTCCTCCTCTCTCTCTCTTG | 60.423 | 59.091 | 0.00 | 0.00 | 0.00 | 3.02 |
2458 | 2953 | 1.024271 | CCTCCTCTCTCTCTCTTGCG | 58.976 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2459 | 2954 | 1.681780 | CCTCCTCTCTCTCTCTTGCGT | 60.682 | 57.143 | 0.00 | 0.00 | 0.00 | 5.24 |
2461 | 2956 | 1.173043 | CCTCTCTCTCTCTTGCGTGT | 58.827 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2462 | 2957 | 2.027100 | TCCTCTCTCTCTCTTGCGTGTA | 60.027 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2464 | 2959 | 2.744741 | CTCTCTCTCTCTTGCGTGTACA | 59.255 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2465 | 2960 | 3.348119 | TCTCTCTCTCTTGCGTGTACAT | 58.652 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
2508 | 3003 | 5.889289 | ACTGTAGGAGCACCAAAAAGTAAAA | 59.111 | 36.000 | 2.07 | 0.00 | 38.94 | 1.52 |
2509 | 3004 | 6.378848 | ACTGTAGGAGCACCAAAAAGTAAAAA | 59.621 | 34.615 | 2.07 | 0.00 | 38.94 | 1.94 |
2538 | 3033 | 4.750952 | GAGACCAACTCAAAAGCTAACC | 57.249 | 45.455 | 0.00 | 0.00 | 44.36 | 2.85 |
2541 | 3036 | 3.487372 | ACCAACTCAAAAGCTAACCCTC | 58.513 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
2542 | 3037 | 2.484264 | CCAACTCAAAAGCTAACCCTCG | 59.516 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2543 | 3038 | 3.139077 | CAACTCAAAAGCTAACCCTCGT | 58.861 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
2544 | 3039 | 3.487120 | ACTCAAAAGCTAACCCTCGTT | 57.513 | 42.857 | 0.00 | 0.00 | 35.90 | 3.85 |
2546 | 3041 | 2.484264 | CTCAAAAGCTAACCCTCGTTGG | 59.516 | 50.000 | 0.00 | 0.00 | 33.17 | 3.77 |
2555 | 3050 | 5.576447 | CTAACCCTCGTTGGCATTTATTT | 57.424 | 39.130 | 0.00 | 0.00 | 33.17 | 1.40 |
2556 | 3051 | 6.687081 | CTAACCCTCGTTGGCATTTATTTA | 57.313 | 37.500 | 0.00 | 0.00 | 33.17 | 1.40 |
2557 | 3052 | 7.272037 | CTAACCCTCGTTGGCATTTATTTAT | 57.728 | 36.000 | 0.00 | 0.00 | 33.17 | 1.40 |
2559 | 3054 | 6.877611 | ACCCTCGTTGGCATTTATTTATAG | 57.122 | 37.500 | 0.00 | 0.00 | 0.00 | 1.31 |
2560 | 3055 | 6.597562 | ACCCTCGTTGGCATTTATTTATAGA | 58.402 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2561 | 3056 | 7.057894 | ACCCTCGTTGGCATTTATTTATAGAA | 58.942 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
2562 | 3057 | 7.228706 | ACCCTCGTTGGCATTTATTTATAGAAG | 59.771 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
2563 | 3058 | 7.444183 | CCCTCGTTGGCATTTATTTATAGAAGA | 59.556 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
2564 | 3059 | 8.836413 | CCTCGTTGGCATTTATTTATAGAAGAA | 58.164 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
2566 | 3061 | 9.997482 | TCGTTGGCATTTATTTATAGAAGAAAC | 57.003 | 29.630 | 0.00 | 0.00 | 0.00 | 2.78 |
2571 | 3066 | 9.967346 | GGCATTTATTTATAGAAGAAACTTCCC | 57.033 | 33.333 | 7.72 | 0.00 | 0.00 | 3.97 |
2576 | 3071 | 5.670792 | TTATAGAAGAAACTTCCCGAGCA | 57.329 | 39.130 | 7.72 | 0.00 | 0.00 | 4.26 |
2578 | 3073 | 1.157585 | GAAGAAACTTCCCGAGCACC | 58.842 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2580 | 3075 | 1.674651 | GAAACTTCCCGAGCACCCC | 60.675 | 63.158 | 0.00 | 0.00 | 0.00 | 4.95 |
2581 | 3076 | 2.406002 | GAAACTTCCCGAGCACCCCA | 62.406 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2582 | 3077 | 2.692273 | AAACTTCCCGAGCACCCCAC | 62.692 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2583 | 3078 | 4.760047 | CTTCCCGAGCACCCCACG | 62.760 | 72.222 | 0.00 | 0.00 | 0.00 | 4.94 |
2588 | 3083 | 4.308458 | CGAGCACCCCACGTCCAA | 62.308 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
2590 | 3085 | 3.168528 | AGCACCCCACGTCCAAGT | 61.169 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
2592 | 3087 | 1.375523 | GCACCCCACGTCCAAGTAG | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 2.57 |
2593 | 3088 | 1.295423 | CACCCCACGTCCAAGTAGG | 59.705 | 63.158 | 0.00 | 0.00 | 39.47 | 3.18 |
2595 | 3090 | 1.916777 | CCCCACGTCCAAGTAGGGT | 60.917 | 63.158 | 4.36 | 0.00 | 38.11 | 4.34 |
2596 | 3091 | 1.295423 | CCCACGTCCAAGTAGGGTG | 59.705 | 63.158 | 0.00 | 0.00 | 38.24 | 4.61 |
2598 | 3093 | 1.295423 | CACGTCCAAGTAGGGTGGG | 59.705 | 63.158 | 0.00 | 0.00 | 36.73 | 4.61 |
2600 | 3095 | 2.291043 | CGTCCAAGTAGGGTGGGCT | 61.291 | 63.158 | 0.00 | 0.00 | 38.70 | 5.19 |
2604 | 3099 | 2.531685 | AAGTAGGGTGGGCTGGCA | 60.532 | 61.111 | 2.88 | 0.00 | 0.00 | 4.92 |
2605 | 3100 | 2.606587 | AAGTAGGGTGGGCTGGCAG | 61.607 | 63.158 | 10.94 | 10.94 | 0.00 | 4.85 |
2613 | 3108 | 4.982701 | GGGCTGGCAGCAACCACT | 62.983 | 66.667 | 37.49 | 0.00 | 44.75 | 4.00 |
2614 | 3109 | 3.677648 | GGCTGGCAGCAACCACTG | 61.678 | 66.667 | 37.49 | 0.50 | 44.75 | 3.66 |
2616 | 3111 | 1.600636 | GCTGGCAGCAACCACTGTA | 60.601 | 57.895 | 33.33 | 0.00 | 41.89 | 2.74 |
2618 | 3113 | 0.957395 | CTGGCAGCAACCACTGTAGG | 60.957 | 60.000 | 0.00 | 0.00 | 39.96 | 3.18 |
2619 | 3114 | 1.374947 | GGCAGCAACCACTGTAGGA | 59.625 | 57.895 | 0.00 | 0.00 | 39.96 | 2.94 |
2621 | 3116 | 1.301677 | GCAGCAACCACTGTAGGAGC | 61.302 | 60.000 | 3.76 | 6.76 | 39.96 | 4.70 |
2623 | 3118 | 0.035458 | AGCAACCACTGTAGGAGCAC | 59.965 | 55.000 | 14.69 | 0.00 | 36.29 | 4.40 |
2625 | 3120 | 0.396435 | CAACCACTGTAGGAGCACCA | 59.604 | 55.000 | 2.07 | 0.00 | 38.94 | 4.17 |
2626 | 3121 | 1.136828 | AACCACTGTAGGAGCACCAA | 58.863 | 50.000 | 2.07 | 0.00 | 38.94 | 3.67 |
2627 | 3122 | 1.136828 | ACCACTGTAGGAGCACCAAA | 58.863 | 50.000 | 2.07 | 0.00 | 38.94 | 3.28 |
2629 | 3124 | 2.092103 | ACCACTGTAGGAGCACCAAAAA | 60.092 | 45.455 | 2.07 | 0.00 | 38.94 | 1.94 |
2634 | 3631 | 5.473504 | CACTGTAGGAGCACCAAAAAGTAAT | 59.526 | 40.000 | 2.07 | 0.00 | 38.94 | 1.89 |
2699 | 3696 | 7.634671 | TCGGTAGATGATCAAACAGTAGTTA | 57.365 | 36.000 | 0.00 | 0.00 | 36.84 | 2.24 |
2703 | 3700 | 9.871238 | GGTAGATGATCAAACAGTAGTTAGAAA | 57.129 | 33.333 | 0.00 | 0.00 | 36.84 | 2.52 |
2739 | 3741 | 0.251787 | AAAGGTGATGGAGTTGGGGC | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
2778 | 3780 | 2.238646 | GGTGTGGTCCATGGTTAGATGA | 59.761 | 50.000 | 12.58 | 0.00 | 0.00 | 2.92 |
2790 | 3792 | 5.540400 | TGGTTAGATGAATAACGGGGTAG | 57.460 | 43.478 | 0.00 | 0.00 | 36.66 | 3.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
88 | 96 | 4.798344 | CAGGCAGCAGGGAGGCAG | 62.798 | 72.222 | 0.00 | 0.00 | 35.83 | 4.85 |
121 | 129 | 4.151883 | CTGAAAAGAATTGGAGTTGGGGA | 58.848 | 43.478 | 0.00 | 0.00 | 0.00 | 4.81 |
151 | 159 | 2.111878 | GTGAGTGCCCTGTGCTGT | 59.888 | 61.111 | 0.00 | 0.00 | 42.00 | 4.40 |
153 | 161 | 2.746359 | GAGTGAGTGCCCTGTGCT | 59.254 | 61.111 | 0.00 | 0.00 | 42.00 | 4.40 |
167 | 178 | 4.569162 | TCGTTGAAACTTTCATTCACGAGT | 59.431 | 37.500 | 19.11 | 0.00 | 39.84 | 4.18 |
168 | 179 | 5.078153 | TCGTTGAAACTTTCATTCACGAG | 57.922 | 39.130 | 19.11 | 1.74 | 39.84 | 4.18 |
169 | 180 | 4.025229 | CCTCGTTGAAACTTTCATTCACGA | 60.025 | 41.667 | 20.66 | 20.66 | 39.84 | 4.35 |
170 | 181 | 4.025229 | TCCTCGTTGAAACTTTCATTCACG | 60.025 | 41.667 | 16.16 | 16.16 | 39.84 | 4.35 |
171 | 182 | 5.236478 | TCTCCTCGTTGAAACTTTCATTCAC | 59.764 | 40.000 | 5.03 | 0.67 | 39.84 | 3.18 |
172 | 183 | 5.236478 | GTCTCCTCGTTGAAACTTTCATTCA | 59.764 | 40.000 | 5.03 | 0.00 | 39.84 | 2.57 |
173 | 184 | 5.612709 | CGTCTCCTCGTTGAAACTTTCATTC | 60.613 | 44.000 | 5.03 | 2.06 | 39.84 | 2.67 |
174 | 185 | 4.211374 | CGTCTCCTCGTTGAAACTTTCATT | 59.789 | 41.667 | 5.03 | 0.00 | 39.84 | 2.57 |
175 | 186 | 3.741344 | CGTCTCCTCGTTGAAACTTTCAT | 59.259 | 43.478 | 5.03 | 0.00 | 39.84 | 2.57 |
211 | 222 | 1.080974 | GCATGGCATATTCGCTGGC | 60.081 | 57.895 | 0.00 | 0.00 | 39.47 | 4.85 |
212 | 223 | 1.208358 | CGCATGGCATATTCGCTGG | 59.792 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
213 | 224 | 0.800631 | ATCGCATGGCATATTCGCTG | 59.199 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
214 | 225 | 2.274437 | CTATCGCATGGCATATTCGCT | 58.726 | 47.619 | 0.00 | 0.00 | 0.00 | 4.93 |
215 | 226 | 2.002586 | ACTATCGCATGGCATATTCGC | 58.997 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
216 | 227 | 2.222886 | GCACTATCGCATGGCATATTCG | 60.223 | 50.000 | 0.00 | 4.63 | 0.00 | 3.34 |
217 | 228 | 2.096496 | GGCACTATCGCATGGCATATTC | 59.904 | 50.000 | 0.00 | 0.00 | 40.91 | 1.75 |
219 | 230 | 1.003464 | TGGCACTATCGCATGGCATAT | 59.997 | 47.619 | 0.00 | 0.00 | 45.49 | 1.78 |
220 | 231 | 0.396060 | TGGCACTATCGCATGGCATA | 59.604 | 50.000 | 0.00 | 0.00 | 45.49 | 3.14 |
221 | 232 | 1.148949 | TGGCACTATCGCATGGCAT | 59.851 | 52.632 | 0.00 | 0.00 | 45.49 | 4.40 |
223 | 234 | 1.819208 | TGTGGCACTATCGCATGGC | 60.819 | 57.895 | 19.83 | 0.00 | 41.57 | 4.40 |
224 | 235 | 1.439353 | GGTGTGGCACTATCGCATGG | 61.439 | 60.000 | 19.83 | 0.00 | 34.40 | 3.66 |
225 | 236 | 1.765161 | CGGTGTGGCACTATCGCATG | 61.765 | 60.000 | 19.83 | 0.00 | 34.40 | 4.06 |
226 | 237 | 1.521457 | CGGTGTGGCACTATCGCAT | 60.521 | 57.895 | 19.83 | 0.00 | 34.40 | 4.73 |
227 | 238 | 2.125713 | CGGTGTGGCACTATCGCA | 60.126 | 61.111 | 19.83 | 0.00 | 34.40 | 5.10 |
228 | 239 | 2.125673 | ACGGTGTGGCACTATCGC | 60.126 | 61.111 | 19.83 | 0.00 | 34.40 | 4.58 |
229 | 240 | 0.389296 | TTCACGGTGTGGCACTATCG | 60.389 | 55.000 | 19.83 | 19.83 | 34.40 | 2.92 |
230 | 241 | 1.076332 | GTTCACGGTGTGGCACTATC | 58.924 | 55.000 | 19.83 | 9.10 | 34.40 | 2.08 |
231 | 242 | 0.321298 | GGTTCACGGTGTGGCACTAT | 60.321 | 55.000 | 19.83 | 0.00 | 34.40 | 2.12 |
232 | 243 | 1.070105 | GGTTCACGGTGTGGCACTA | 59.930 | 57.895 | 19.83 | 2.23 | 34.40 | 2.74 |
233 | 244 | 2.203153 | GGTTCACGGTGTGGCACT | 60.203 | 61.111 | 19.83 | 0.00 | 34.40 | 4.40 |
236 | 247 | 4.922026 | ACGGGTTCACGGTGTGGC | 62.922 | 66.667 | 8.17 | 0.00 | 38.39 | 5.01 |
240 | 251 | 3.708734 | GCGAACGGGTTCACGGTG | 61.709 | 66.667 | 11.69 | 0.56 | 39.46 | 4.94 |
253 | 264 | 2.920912 | ACCCTCCTTGACCGCGAA | 60.921 | 61.111 | 8.23 | 0.00 | 0.00 | 4.70 |
256 | 267 | 2.047179 | GTGACCCTCCTTGACCGC | 60.047 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
257 | 268 | 0.613853 | TAGGTGACCCTCCTTGACCG | 60.614 | 60.000 | 0.00 | 0.00 | 41.45 | 4.79 |
340 | 351 | 1.269309 | GCTAGTCGTGATAGCAGTGGG | 60.269 | 57.143 | 10.12 | 0.00 | 44.14 | 4.61 |
355 | 366 | 1.093159 | ACGATCGAGGAAACGCTAGT | 58.907 | 50.000 | 24.34 | 0.00 | 0.00 | 2.57 |
357 | 368 | 3.881795 | GATAACGATCGAGGAAACGCTA | 58.118 | 45.455 | 24.34 | 0.00 | 0.00 | 4.26 |
379 | 390 | 3.641437 | TTGAAAACATGGTACTGCTGC | 57.359 | 42.857 | 0.00 | 0.00 | 0.00 | 5.25 |
392 | 403 | 2.710460 | CGTTTACTTCGGCGTTGAAAAC | 59.290 | 45.455 | 6.85 | 12.62 | 45.31 | 2.43 |
440 | 455 | 0.528924 | AAACACGTGGATCCGATCGA | 59.471 | 50.000 | 21.57 | 2.91 | 0.00 | 3.59 |
442 | 457 | 3.713288 | TCATAAACACGTGGATCCGATC | 58.287 | 45.455 | 21.57 | 0.00 | 0.00 | 3.69 |
459 | 474 | 2.093500 | GCCGTGGCCTCATGATATCATA | 60.093 | 50.000 | 17.77 | 6.34 | 33.12 | 2.15 |
461 | 476 | 0.035317 | GCCGTGGCCTCATGATATCA | 59.965 | 55.000 | 8.10 | 8.10 | 34.56 | 2.15 |
462 | 477 | 0.322975 | AGCCGTGGCCTCATGATATC | 59.677 | 55.000 | 7.39 | 0.00 | 43.17 | 1.63 |
463 | 478 | 0.322975 | GAGCCGTGGCCTCATGATAT | 59.677 | 55.000 | 7.39 | 0.00 | 43.17 | 1.63 |
464 | 479 | 0.760567 | AGAGCCGTGGCCTCATGATA | 60.761 | 55.000 | 7.39 | 0.00 | 43.17 | 2.15 |
465 | 480 | 2.068821 | AGAGCCGTGGCCTCATGAT | 61.069 | 57.895 | 7.39 | 0.00 | 43.17 | 2.45 |
466 | 481 | 2.685017 | AGAGCCGTGGCCTCATGA | 60.685 | 61.111 | 7.39 | 0.00 | 43.17 | 3.07 |
467 | 482 | 2.513204 | CAGAGCCGTGGCCTCATG | 60.513 | 66.667 | 7.39 | 0.00 | 43.17 | 3.07 |
468 | 483 | 3.790437 | CCAGAGCCGTGGCCTCAT | 61.790 | 66.667 | 7.39 | 0.00 | 43.17 | 2.90 |
492 | 507 | 1.528542 | CAGCCCCATCCATGCTCTG | 60.529 | 63.158 | 0.00 | 0.00 | 31.77 | 3.35 |
493 | 508 | 2.764737 | CCAGCCCCATCCATGCTCT | 61.765 | 63.158 | 0.00 | 0.00 | 31.77 | 4.09 |
495 | 510 | 2.318966 | TTCCAGCCCCATCCATGCT | 61.319 | 57.895 | 0.00 | 0.00 | 35.25 | 3.79 |
496 | 511 | 2.129785 | GTTCCAGCCCCATCCATGC | 61.130 | 63.158 | 0.00 | 0.00 | 0.00 | 4.06 |
499 | 533 | 1.213619 | TCATGTTCCAGCCCCATCCA | 61.214 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
502 | 536 | 1.133575 | CATCTCATGTTCCAGCCCCAT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
511 | 545 | 7.377397 | CGTTTACTAGTAGCTCATCTCATGTTC | 59.623 | 40.741 | 2.23 | 0.00 | 0.00 | 3.18 |
514 | 548 | 6.730175 | ACGTTTACTAGTAGCTCATCTCATG | 58.270 | 40.000 | 2.23 | 0.00 | 0.00 | 3.07 |
516 | 550 | 6.754702 | AACGTTTACTAGTAGCTCATCTCA | 57.245 | 37.500 | 2.23 | 0.00 | 0.00 | 3.27 |
517 | 551 | 7.474190 | AGAAACGTTTACTAGTAGCTCATCTC | 58.526 | 38.462 | 14.65 | 0.00 | 0.00 | 2.75 |
519 | 553 | 6.692249 | GGAGAAACGTTTACTAGTAGCTCATC | 59.308 | 42.308 | 14.65 | 0.00 | 0.00 | 2.92 |
521 | 555 | 5.709164 | AGGAGAAACGTTTACTAGTAGCTCA | 59.291 | 40.000 | 14.65 | 0.00 | 0.00 | 4.26 |
529 | 564 | 8.891671 | ACAATGTTAAGGAGAAACGTTTACTA | 57.108 | 30.769 | 14.65 | 0.00 | 34.61 | 1.82 |
544 | 579 | 3.009723 | ACCGATGGCTGACAATGTTAAG | 58.990 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
546 | 581 | 2.027653 | TGACCGATGGCTGACAATGTTA | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
563 | 598 | 3.810310 | TTGTTTGTGGGTTGATTGACC | 57.190 | 42.857 | 0.00 | 0.00 | 39.04 | 4.02 |
580 | 615 | 2.335316 | TTAACCAGCTCCACGTTTGT | 57.665 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
583 | 618 | 1.349688 | TGGATTAACCAGCTCCACGTT | 59.650 | 47.619 | 0.00 | 0.00 | 44.64 | 3.99 |
594 | 629 | 2.469516 | CCCGCGCACTGGATTAACC | 61.470 | 63.158 | 8.75 | 0.00 | 39.54 | 2.85 |
595 | 630 | 3.098555 | CCCGCGCACTGGATTAAC | 58.901 | 61.111 | 8.75 | 0.00 | 0.00 | 2.01 |
596 | 631 | 2.822255 | GCCCGCGCACTGGATTAA | 60.822 | 61.111 | 8.75 | 0.00 | 34.03 | 1.40 |
614 | 649 | 2.869233 | ATTTAATCGTGCCATGCCAC | 57.131 | 45.000 | 0.00 | 0.00 | 0.00 | 5.01 |
615 | 650 | 3.243367 | GCTAATTTAATCGTGCCATGCCA | 60.243 | 43.478 | 0.00 | 0.00 | 0.00 | 4.92 |
616 | 651 | 3.004734 | AGCTAATTTAATCGTGCCATGCC | 59.995 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
617 | 652 | 4.228912 | AGCTAATTTAATCGTGCCATGC | 57.771 | 40.909 | 0.00 | 0.00 | 0.00 | 4.06 |
618 | 653 | 5.853282 | GCTAAGCTAATTTAATCGTGCCATG | 59.147 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
619 | 654 | 5.765182 | AGCTAAGCTAATTTAATCGTGCCAT | 59.235 | 36.000 | 0.00 | 0.00 | 36.99 | 4.40 |
620 | 655 | 5.123227 | AGCTAAGCTAATTTAATCGTGCCA | 58.877 | 37.500 | 0.00 | 0.00 | 36.99 | 4.92 |
621 | 656 | 5.674933 | AGCTAAGCTAATTTAATCGTGCC | 57.325 | 39.130 | 0.00 | 0.00 | 36.99 | 5.01 |
645 | 680 | 1.344763 | ACTCACGTCCAAAGCTAAGCT | 59.655 | 47.619 | 0.00 | 0.00 | 42.56 | 3.74 |
647 | 682 | 2.915463 | CGTACTCACGTCCAAAGCTAAG | 59.085 | 50.000 | 0.00 | 0.00 | 43.31 | 2.18 |
648 | 683 | 2.937591 | CGTACTCACGTCCAAAGCTAA | 58.062 | 47.619 | 0.00 | 0.00 | 43.31 | 3.09 |
649 | 684 | 2.624316 | CGTACTCACGTCCAAAGCTA | 57.376 | 50.000 | 0.00 | 0.00 | 43.31 | 3.32 |
650 | 685 | 3.491581 | CGTACTCACGTCCAAAGCT | 57.508 | 52.632 | 0.00 | 0.00 | 43.31 | 3.74 |
660 | 695 | 4.202080 | TGCCCATAATAGTCACGTACTCAC | 60.202 | 45.833 | 0.00 | 0.00 | 39.80 | 3.51 |
661 | 696 | 3.955551 | TGCCCATAATAGTCACGTACTCA | 59.044 | 43.478 | 0.00 | 0.00 | 39.80 | 3.41 |
662 | 697 | 4.296690 | GTGCCCATAATAGTCACGTACTC | 58.703 | 47.826 | 0.00 | 0.00 | 39.80 | 2.59 |
663 | 698 | 3.069158 | GGTGCCCATAATAGTCACGTACT | 59.931 | 47.826 | 0.00 | 0.00 | 42.62 | 2.73 |
664 | 699 | 3.069158 | AGGTGCCCATAATAGTCACGTAC | 59.931 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
665 | 700 | 3.302161 | AGGTGCCCATAATAGTCACGTA | 58.698 | 45.455 | 0.00 | 0.00 | 0.00 | 3.57 |
724 | 764 | 0.185901 | TTGAGCCCTGGAATATGCCC | 59.814 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
764 | 814 | 5.009631 | TGATTACCATTGTTGTCTTCTGGG | 58.990 | 41.667 | 0.00 | 0.00 | 0.00 | 4.45 |
880 | 930 | 1.592223 | GGGAGGACAGAGGTTGACG | 59.408 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
920 | 970 | 0.584396 | CGCGTTGTGGTTTGAGCTTA | 59.416 | 50.000 | 0.00 | 0.00 | 0.00 | 3.09 |
924 | 974 | 1.654137 | GTGCGCGTTGTGGTTTGAG | 60.654 | 57.895 | 8.43 | 0.00 | 0.00 | 3.02 |
937 | 987 | 4.645921 | GGCTTTGTGTGGGTGCGC | 62.646 | 66.667 | 0.00 | 0.00 | 0.00 | 6.09 |
941 | 991 | 1.071471 | CTCTCGGCTTTGTGTGGGT | 59.929 | 57.895 | 0.00 | 0.00 | 0.00 | 4.51 |
942 | 992 | 2.328099 | GCTCTCGGCTTTGTGTGGG | 61.328 | 63.158 | 0.00 | 0.00 | 38.06 | 4.61 |
1179 | 1241 | 2.328099 | GGAGTCGTACCCGTCACGT | 61.328 | 63.158 | 0.00 | 0.00 | 40.27 | 4.49 |
1698 | 1763 | 2.089854 | CCACTTGGCGAGCATGTAC | 58.910 | 57.895 | 0.37 | 0.00 | 0.00 | 2.90 |
1719 | 1784 | 4.484872 | GACCGCTTGTAGGGCCCC | 62.485 | 72.222 | 21.43 | 4.15 | 0.00 | 5.80 |
1784 | 1852 | 2.754664 | GATGATGTCCATCCCGGGGC | 62.755 | 65.000 | 23.50 | 6.81 | 44.59 | 5.80 |
1798 | 1866 | 3.204827 | GGCGCGGCACTTGATGAT | 61.205 | 61.111 | 29.32 | 0.00 | 0.00 | 2.45 |
1896 | 1964 | 0.171231 | TGACATCTTCCAGAGACGCG | 59.829 | 55.000 | 3.53 | 3.53 | 37.17 | 6.01 |
1897 | 1965 | 2.593346 | ATGACATCTTCCAGAGACGC | 57.407 | 50.000 | 0.00 | 0.00 | 37.17 | 5.19 |
1899 | 1967 | 5.592282 | TCAGACTATGACATCTTCCAGAGAC | 59.408 | 44.000 | 0.00 | 0.00 | 32.57 | 3.36 |
1900 | 1968 | 5.760131 | TCAGACTATGACATCTTCCAGAGA | 58.240 | 41.667 | 0.00 | 0.00 | 33.74 | 3.10 |
1901 | 1969 | 6.653526 | ATCAGACTATGACATCTTCCAGAG | 57.346 | 41.667 | 0.00 | 0.00 | 41.91 | 3.35 |
1902 | 1970 | 7.782168 | ACTTATCAGACTATGACATCTTCCAGA | 59.218 | 37.037 | 0.00 | 0.00 | 41.91 | 3.86 |
1903 | 1971 | 7.950512 | ACTTATCAGACTATGACATCTTCCAG | 58.049 | 38.462 | 0.00 | 0.00 | 41.91 | 3.86 |
1904 | 1972 | 7.904558 | ACTTATCAGACTATGACATCTTCCA | 57.095 | 36.000 | 0.00 | 0.00 | 41.91 | 3.53 |
1908 | 1976 | 9.806448 | ACATCTACTTATCAGACTATGACATCT | 57.194 | 33.333 | 0.00 | 0.00 | 41.91 | 2.90 |
1917 | 1985 | 9.725019 | CATCTCTCTACATCTACTTATCAGACT | 57.275 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
1918 | 1986 | 9.719355 | TCATCTCTCTACATCTACTTATCAGAC | 57.281 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
1921 | 1989 | 9.377312 | CGATCATCTCTCTACATCTACTTATCA | 57.623 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
1922 | 1990 | 9.594478 | TCGATCATCTCTCTACATCTACTTATC | 57.406 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
1924 | 1992 | 9.377312 | CATCGATCATCTCTCTACATCTACTTA | 57.623 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
1925 | 1993 | 8.100164 | TCATCGATCATCTCTCTACATCTACTT | 58.900 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
1926 | 1994 | 7.619965 | TCATCGATCATCTCTCTACATCTACT | 58.380 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
1927 | 1995 | 7.549134 | ACTCATCGATCATCTCTCTACATCTAC | 59.451 | 40.741 | 0.00 | 0.00 | 0.00 | 2.59 |
1950 | 2018 | 2.765250 | TTCGAGGCACGCTCCAACTC | 62.765 | 60.000 | 0.00 | 0.00 | 42.26 | 3.01 |
1955 | 2023 | 2.517450 | CGAATTCGAGGCACGCTCC | 61.517 | 63.158 | 23.29 | 0.00 | 43.02 | 4.70 |
1999 | 2068 | 6.825721 | ACAATTTGCTCCTTTCATAGTCTAGG | 59.174 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2000 | 2069 | 7.856145 | ACAATTTGCTCCTTTCATAGTCTAG | 57.144 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2002 | 2071 | 6.071728 | CCAACAATTTGCTCCTTTCATAGTCT | 60.072 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
2003 | 2072 | 6.095377 | CCAACAATTTGCTCCTTTCATAGTC | 58.905 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2004 | 2073 | 5.539955 | ACCAACAATTTGCTCCTTTCATAGT | 59.460 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2005 | 2074 | 6.029346 | ACCAACAATTTGCTCCTTTCATAG | 57.971 | 37.500 | 0.00 | 0.00 | 0.00 | 2.23 |
2009 | 2078 | 3.069443 | TGGACCAACAATTTGCTCCTTTC | 59.931 | 43.478 | 0.00 | 0.00 | 38.06 | 2.62 |
2013 | 2086 | 2.094026 | GGATGGACCAACAATTTGCTCC | 60.094 | 50.000 | 0.00 | 0.00 | 37.81 | 4.70 |
2029 | 2102 | 0.396001 | TGCATGTGGATGGTGGATGG | 60.396 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2030 | 2103 | 1.339929 | CATGCATGTGGATGGTGGATG | 59.660 | 52.381 | 18.91 | 0.00 | 39.75 | 3.51 |
2031 | 2104 | 1.215924 | TCATGCATGTGGATGGTGGAT | 59.784 | 47.619 | 25.43 | 0.00 | 43.03 | 3.41 |
2032 | 2105 | 0.624785 | TCATGCATGTGGATGGTGGA | 59.375 | 50.000 | 25.43 | 0.00 | 43.03 | 4.02 |
2033 | 2106 | 1.611977 | GATCATGCATGTGGATGGTGG | 59.388 | 52.381 | 25.43 | 0.00 | 43.03 | 4.61 |
2034 | 2107 | 1.265905 | CGATCATGCATGTGGATGGTG | 59.734 | 52.381 | 25.43 | 0.00 | 43.03 | 4.17 |
2035 | 2108 | 1.141455 | TCGATCATGCATGTGGATGGT | 59.859 | 47.619 | 25.43 | 7.28 | 43.03 | 3.55 |
2058 | 2131 | 0.040067 | GCTGCTTGAAAGGTTGACGG | 60.040 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2069 | 2142 | 2.825075 | ATCGTGCCATGGCTGCTTGA | 62.825 | 55.000 | 35.53 | 24.24 | 42.51 | 3.02 |
2070 | 2143 | 1.940883 | AATCGTGCCATGGCTGCTTG | 61.941 | 55.000 | 35.53 | 20.27 | 42.51 | 4.01 |
2107 | 2182 | 2.084546 | ACGCCTTTATGTTTCCAGCTC | 58.915 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
2211 | 2290 | 2.710724 | CTAATCCGCCTACACCCGCC | 62.711 | 65.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2212 | 2291 | 1.300697 | CTAATCCGCCTACACCCGC | 60.301 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
2213 | 2292 | 1.300697 | GCTAATCCGCCTACACCCG | 60.301 | 63.158 | 0.00 | 0.00 | 0.00 | 5.28 |
2214 | 2293 | 0.396811 | ATGCTAATCCGCCTACACCC | 59.603 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2222 | 2301 | 0.531974 | TTCGACCCATGCTAATCCGC | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
2243 | 2322 | 6.292649 | CGCAGATTGATAAAAGTAATGCCGTA | 60.293 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
2245 | 2324 | 4.905866 | CGCAGATTGATAAAAGTAATGCCG | 59.094 | 41.667 | 0.00 | 0.00 | 0.00 | 5.69 |
2254 | 2333 | 3.823873 | ACAACCACCGCAGATTGATAAAA | 59.176 | 39.130 | 0.00 | 0.00 | 0.00 | 1.52 |
2262 | 2341 | 2.047274 | CCGACAACCACCGCAGAT | 60.047 | 61.111 | 0.00 | 0.00 | 0.00 | 2.90 |
2296 | 2382 | 9.778741 | TTGCTTGGTTGATCCTTATATTACTAG | 57.221 | 33.333 | 0.00 | 0.00 | 37.07 | 2.57 |
2299 | 2385 | 7.013274 | TGCTTGCTTGGTTGATCCTTATATTAC | 59.987 | 37.037 | 0.00 | 0.00 | 37.07 | 1.89 |
2303 | 2389 | 4.854173 | TGCTTGCTTGGTTGATCCTTATA | 58.146 | 39.130 | 0.00 | 0.00 | 37.07 | 0.98 |
2304 | 2390 | 3.700538 | TGCTTGCTTGGTTGATCCTTAT | 58.299 | 40.909 | 0.00 | 0.00 | 37.07 | 1.73 |
2306 | 2392 | 1.999648 | TGCTTGCTTGGTTGATCCTT | 58.000 | 45.000 | 0.00 | 0.00 | 37.07 | 3.36 |
2307 | 2393 | 1.615392 | GTTGCTTGCTTGGTTGATCCT | 59.385 | 47.619 | 0.00 | 0.00 | 37.07 | 3.24 |
2308 | 2394 | 1.340889 | TGTTGCTTGCTTGGTTGATCC | 59.659 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
2309 | 2395 | 2.798976 | TGTTGCTTGCTTGGTTGATC | 57.201 | 45.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2310 | 2396 | 4.221262 | ACATATGTTGCTTGCTTGGTTGAT | 59.779 | 37.500 | 1.41 | 0.00 | 0.00 | 2.57 |
2311 | 2397 | 3.573538 | ACATATGTTGCTTGCTTGGTTGA | 59.426 | 39.130 | 1.41 | 0.00 | 0.00 | 3.18 |
2312 | 2398 | 3.916761 | ACATATGTTGCTTGCTTGGTTG | 58.083 | 40.909 | 1.41 | 0.00 | 0.00 | 3.77 |
2313 | 2399 | 4.605640 | AACATATGTTGCTTGCTTGGTT | 57.394 | 36.364 | 20.19 | 0.00 | 36.80 | 3.67 |
2314 | 2400 | 4.605640 | AAACATATGTTGCTTGCTTGGT | 57.394 | 36.364 | 21.46 | 0.00 | 38.44 | 3.67 |
2339 | 2425 | 5.209818 | TCGCCTGATTCGTTTAGGATAAT | 57.790 | 39.130 | 0.00 | 0.00 | 33.33 | 1.28 |
2364 | 2450 | 4.335416 | GAAAGATCACACCCAGAATTCCA | 58.665 | 43.478 | 0.65 | 0.00 | 0.00 | 3.53 |
2376 | 2462 | 8.539674 | CGACAAAATATCATACGAAAGATCACA | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
2390 | 2476 | 1.400142 | CCTTGCGGCGACAAAATATCA | 59.600 | 47.619 | 12.98 | 0.00 | 0.00 | 2.15 |
2402 | 2488 | 0.464373 | TTCATCAGGATCCTTGCGGC | 60.464 | 55.000 | 13.00 | 0.00 | 0.00 | 6.53 |
2403 | 2489 | 1.672881 | GTTTCATCAGGATCCTTGCGG | 59.327 | 52.381 | 13.00 | 0.07 | 0.00 | 5.69 |
2404 | 2490 | 2.096496 | GTGTTTCATCAGGATCCTTGCG | 59.904 | 50.000 | 13.00 | 0.51 | 0.00 | 4.85 |
2419 | 2505 | 0.178990 | AGGGTTGAGGGCAGTGTTTC | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.78 |
2421 | 2507 | 1.456287 | GAGGGTTGAGGGCAGTGTT | 59.544 | 57.895 | 0.00 | 0.00 | 0.00 | 3.32 |
2422 | 2508 | 2.529744 | GGAGGGTTGAGGGCAGTGT | 61.530 | 63.158 | 0.00 | 0.00 | 0.00 | 3.55 |
2423 | 2509 | 2.190488 | GAGGAGGGTTGAGGGCAGTG | 62.190 | 65.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2424 | 2510 | 1.920835 | GAGGAGGGTTGAGGGCAGT | 60.921 | 63.158 | 0.00 | 0.00 | 0.00 | 4.40 |
2425 | 2511 | 2.674220 | GGAGGAGGGTTGAGGGCAG | 61.674 | 68.421 | 0.00 | 0.00 | 0.00 | 4.85 |
2428 | 2514 | 0.689412 | GAGAGGAGGAGGGTTGAGGG | 60.689 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2430 | 2516 | 1.287739 | AGAGAGAGGAGGAGGGTTGAG | 59.712 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
2432 | 2518 | 1.287739 | AGAGAGAGAGGAGGAGGGTTG | 59.712 | 57.143 | 0.00 | 0.00 | 0.00 | 3.77 |
2433 | 2519 | 1.569072 | GAGAGAGAGAGGAGGAGGGTT | 59.431 | 57.143 | 0.00 | 0.00 | 0.00 | 4.11 |
2434 | 2520 | 1.222567 | GAGAGAGAGAGGAGGAGGGT | 58.777 | 60.000 | 0.00 | 0.00 | 0.00 | 4.34 |
2438 | 2933 | 1.408127 | CGCAAGAGAGAGAGAGGAGGA | 60.408 | 57.143 | 0.00 | 0.00 | 43.02 | 3.71 |
2446 | 2941 | 4.521130 | AAATGTACACGCAAGAGAGAGA | 57.479 | 40.909 | 0.00 | 0.00 | 43.62 | 3.10 |
2452 | 2947 | 3.304391 | GCCTGAAAAATGTACACGCAAGA | 60.304 | 43.478 | 0.00 | 0.00 | 43.62 | 3.02 |
2454 | 2949 | 2.621055 | AGCCTGAAAAATGTACACGCAA | 59.379 | 40.909 | 0.00 | 0.00 | 0.00 | 4.85 |
2455 | 2950 | 2.226330 | AGCCTGAAAAATGTACACGCA | 58.774 | 42.857 | 0.00 | 0.00 | 0.00 | 5.24 |
2456 | 2951 | 2.989422 | AGCCTGAAAAATGTACACGC | 57.011 | 45.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2458 | 2953 | 7.918562 | TCTTGTTTAAGCCTGAAAAATGTACAC | 59.081 | 33.333 | 0.00 | 0.00 | 33.82 | 2.90 |
2459 | 2954 | 7.918562 | GTCTTGTTTAAGCCTGAAAAATGTACA | 59.081 | 33.333 | 0.00 | 0.00 | 33.82 | 2.90 |
2461 | 2956 | 8.134895 | CAGTCTTGTTTAAGCCTGAAAAATGTA | 58.865 | 33.333 | 0.00 | 0.00 | 41.26 | 2.29 |
2462 | 2957 | 6.980397 | CAGTCTTGTTTAAGCCTGAAAAATGT | 59.020 | 34.615 | 0.00 | 0.00 | 41.26 | 2.71 |
2464 | 2959 | 7.112452 | ACAGTCTTGTTTAAGCCTGAAAAAT | 57.888 | 32.000 | 5.24 | 0.00 | 41.26 | 1.82 |
2465 | 2960 | 6.524101 | ACAGTCTTGTTTAAGCCTGAAAAA | 57.476 | 33.333 | 5.24 | 0.00 | 41.26 | 1.94 |
2517 | 3012 | 3.502595 | GGGTTAGCTTTTGAGTTGGTCTC | 59.497 | 47.826 | 0.00 | 0.00 | 43.03 | 3.36 |
2518 | 3013 | 3.138468 | AGGGTTAGCTTTTGAGTTGGTCT | 59.862 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2519 | 3014 | 3.487372 | AGGGTTAGCTTTTGAGTTGGTC | 58.513 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
2520 | 3015 | 3.487372 | GAGGGTTAGCTTTTGAGTTGGT | 58.513 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
2521 | 3016 | 2.484264 | CGAGGGTTAGCTTTTGAGTTGG | 59.516 | 50.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2523 | 3018 | 3.487120 | ACGAGGGTTAGCTTTTGAGTT | 57.513 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
2525 | 3020 | 2.484264 | CCAACGAGGGTTAGCTTTTGAG | 59.516 | 50.000 | 0.00 | 0.00 | 33.72 | 3.02 |
2526 | 3021 | 2.500229 | CCAACGAGGGTTAGCTTTTGA | 58.500 | 47.619 | 0.00 | 0.00 | 33.72 | 2.69 |
2527 | 3022 | 1.068541 | GCCAACGAGGGTTAGCTTTTG | 60.069 | 52.381 | 0.00 | 0.00 | 37.72 | 2.44 |
2528 | 3023 | 1.244816 | GCCAACGAGGGTTAGCTTTT | 58.755 | 50.000 | 0.00 | 0.00 | 37.72 | 2.27 |
2529 | 3024 | 0.109723 | TGCCAACGAGGGTTAGCTTT | 59.890 | 50.000 | 0.00 | 0.00 | 40.75 | 3.51 |
2530 | 3025 | 0.328258 | ATGCCAACGAGGGTTAGCTT | 59.672 | 50.000 | 0.00 | 0.00 | 40.75 | 3.74 |
2531 | 3026 | 0.328258 | AATGCCAACGAGGGTTAGCT | 59.672 | 50.000 | 0.00 | 0.00 | 40.75 | 3.32 |
2532 | 3027 | 1.173913 | AAATGCCAACGAGGGTTAGC | 58.826 | 50.000 | 0.00 | 0.00 | 40.57 | 3.09 |
2533 | 3028 | 5.576447 | AAATAAATGCCAACGAGGGTTAG | 57.424 | 39.130 | 0.00 | 0.00 | 38.09 | 2.34 |
2534 | 3029 | 8.212312 | TCTATAAATAAATGCCAACGAGGGTTA | 58.788 | 33.333 | 0.00 | 0.00 | 38.09 | 2.85 |
2536 | 3031 | 6.597562 | TCTATAAATAAATGCCAACGAGGGT | 58.402 | 36.000 | 0.00 | 0.00 | 38.09 | 4.34 |
2537 | 3032 | 7.444183 | TCTTCTATAAATAAATGCCAACGAGGG | 59.556 | 37.037 | 0.00 | 0.00 | 38.09 | 4.30 |
2538 | 3033 | 8.378172 | TCTTCTATAAATAAATGCCAACGAGG | 57.622 | 34.615 | 0.00 | 0.00 | 41.84 | 4.63 |
2546 | 3041 | 9.665264 | CGGGAAGTTTCTTCTATAAATAAATGC | 57.335 | 33.333 | 8.96 | 0.00 | 0.00 | 3.56 |
2549 | 3044 | 9.106070 | GCTCGGGAAGTTTCTTCTATAAATAAA | 57.894 | 33.333 | 8.96 | 0.00 | 0.00 | 1.40 |
2550 | 3045 | 8.262227 | TGCTCGGGAAGTTTCTTCTATAAATAA | 58.738 | 33.333 | 8.96 | 0.00 | 0.00 | 1.40 |
2551 | 3046 | 7.709613 | GTGCTCGGGAAGTTTCTTCTATAAATA | 59.290 | 37.037 | 8.96 | 0.00 | 0.00 | 1.40 |
2552 | 3047 | 6.539103 | GTGCTCGGGAAGTTTCTTCTATAAAT | 59.461 | 38.462 | 8.96 | 0.00 | 0.00 | 1.40 |
2553 | 3048 | 5.873164 | GTGCTCGGGAAGTTTCTTCTATAAA | 59.127 | 40.000 | 8.96 | 0.00 | 0.00 | 1.40 |
2554 | 3049 | 5.416947 | GTGCTCGGGAAGTTTCTTCTATAA | 58.583 | 41.667 | 8.96 | 0.00 | 0.00 | 0.98 |
2555 | 3050 | 4.142004 | GGTGCTCGGGAAGTTTCTTCTATA | 60.142 | 45.833 | 8.96 | 0.00 | 0.00 | 1.31 |
2556 | 3051 | 3.369576 | GGTGCTCGGGAAGTTTCTTCTAT | 60.370 | 47.826 | 8.96 | 0.00 | 0.00 | 1.98 |
2557 | 3052 | 2.028385 | GGTGCTCGGGAAGTTTCTTCTA | 60.028 | 50.000 | 8.96 | 0.00 | 0.00 | 2.10 |
2559 | 3054 | 1.157585 | GGTGCTCGGGAAGTTTCTTC | 58.842 | 55.000 | 0.00 | 1.39 | 0.00 | 2.87 |
2560 | 3055 | 0.250770 | GGGTGCTCGGGAAGTTTCTT | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2561 | 3056 | 1.375326 | GGGTGCTCGGGAAGTTTCT | 59.625 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
2562 | 3057 | 1.674651 | GGGGTGCTCGGGAAGTTTC | 60.675 | 63.158 | 0.00 | 0.00 | 0.00 | 2.78 |
2563 | 3058 | 2.434774 | GGGGTGCTCGGGAAGTTT | 59.565 | 61.111 | 0.00 | 0.00 | 0.00 | 2.66 |
2564 | 3059 | 2.852075 | TGGGGTGCTCGGGAAGTT | 60.852 | 61.111 | 0.00 | 0.00 | 0.00 | 2.66 |
2565 | 3060 | 3.637273 | GTGGGGTGCTCGGGAAGT | 61.637 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2566 | 3061 | 4.760047 | CGTGGGGTGCTCGGGAAG | 62.760 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
2571 | 3066 | 4.308458 | TTGGACGTGGGGTGCTCG | 62.308 | 66.667 | 0.00 | 0.00 | 37.93 | 5.03 |
2573 | 3068 | 1.827399 | CTACTTGGACGTGGGGTGCT | 61.827 | 60.000 | 0.00 | 0.00 | 37.93 | 4.40 |
2574 | 3069 | 1.375523 | CTACTTGGACGTGGGGTGC | 60.376 | 63.158 | 0.00 | 0.00 | 37.52 | 5.01 |
2576 | 3071 | 3.801620 | CCTACTTGGACGTGGGGT | 58.198 | 61.111 | 0.00 | 0.00 | 38.35 | 4.95 |
2578 | 3073 | 1.295423 | CACCCTACTTGGACGTGGG | 59.705 | 63.158 | 0.00 | 0.00 | 43.26 | 4.61 |
2580 | 3075 | 1.295423 | CCCACCCTACTTGGACGTG | 59.705 | 63.158 | 0.00 | 0.00 | 36.02 | 4.49 |
2581 | 3076 | 2.590114 | GCCCACCCTACTTGGACGT | 61.590 | 63.158 | 0.00 | 0.00 | 36.02 | 4.34 |
2582 | 3077 | 2.267961 | GCCCACCCTACTTGGACG | 59.732 | 66.667 | 0.00 | 0.00 | 36.02 | 4.79 |
2583 | 3078 | 1.299976 | CAGCCCACCCTACTTGGAC | 59.700 | 63.158 | 0.00 | 0.00 | 36.02 | 4.02 |
2584 | 3079 | 1.923395 | CCAGCCCACCCTACTTGGA | 60.923 | 63.158 | 0.00 | 0.00 | 36.02 | 3.53 |
2585 | 3080 | 2.677228 | CCAGCCCACCCTACTTGG | 59.323 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
2587 | 3082 | 2.531685 | TGCCAGCCCACCCTACTT | 60.532 | 61.111 | 0.00 | 0.00 | 0.00 | 2.24 |
2588 | 3083 | 3.011517 | CTGCCAGCCCACCCTACT | 61.012 | 66.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2596 | 3091 | 4.982701 | AGTGGTTGCTGCCAGCCC | 62.983 | 66.667 | 15.29 | 9.71 | 41.51 | 5.19 |
2598 | 3093 | 1.580845 | CTACAGTGGTTGCTGCCAGC | 61.581 | 60.000 | 10.45 | 10.45 | 42.82 | 4.85 |
2600 | 3095 | 1.073025 | CCTACAGTGGTTGCTGCCA | 59.927 | 57.895 | 0.00 | 0.00 | 39.96 | 4.92 |
2604 | 3099 | 0.035458 | GTGCTCCTACAGTGGTTGCT | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2605 | 3100 | 0.955919 | GGTGCTCCTACAGTGGTTGC | 60.956 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2607 | 3102 | 1.136828 | TTGGTGCTCCTACAGTGGTT | 58.863 | 50.000 | 6.34 | 0.00 | 34.23 | 3.67 |
2608 | 3103 | 1.136828 | TTTGGTGCTCCTACAGTGGT | 58.863 | 50.000 | 6.34 | 0.00 | 34.23 | 4.16 |
2612 | 3107 | 6.381801 | CAATTACTTTTTGGTGCTCCTACAG | 58.618 | 40.000 | 6.34 | 0.32 | 34.23 | 2.74 |
2613 | 3108 | 5.278758 | GCAATTACTTTTTGGTGCTCCTACA | 60.279 | 40.000 | 6.34 | 0.00 | 34.23 | 2.74 |
2614 | 3109 | 5.161358 | GCAATTACTTTTTGGTGCTCCTAC | 58.839 | 41.667 | 6.34 | 0.00 | 34.23 | 3.18 |
2616 | 3111 | 3.640967 | TGCAATTACTTTTTGGTGCTCCT | 59.359 | 39.130 | 6.34 | 0.00 | 33.19 | 3.69 |
2618 | 3113 | 4.143052 | GCATGCAATTACTTTTTGGTGCTC | 60.143 | 41.667 | 14.21 | 0.00 | 33.19 | 4.26 |
2619 | 3114 | 3.747529 | GCATGCAATTACTTTTTGGTGCT | 59.252 | 39.130 | 14.21 | 0.00 | 33.19 | 4.40 |
2621 | 3116 | 3.436359 | GGGCATGCAATTACTTTTTGGTG | 59.564 | 43.478 | 21.36 | 0.00 | 0.00 | 4.17 |
2623 | 3118 | 2.672381 | CGGGCATGCAATTACTTTTTGG | 59.328 | 45.455 | 21.36 | 0.00 | 0.00 | 3.28 |
2625 | 3120 | 3.676291 | ACGGGCATGCAATTACTTTTT | 57.324 | 38.095 | 21.36 | 0.00 | 0.00 | 1.94 |
2626 | 3121 | 3.428862 | GCTACGGGCATGCAATTACTTTT | 60.429 | 43.478 | 21.36 | 0.00 | 41.35 | 2.27 |
2627 | 3122 | 2.099098 | GCTACGGGCATGCAATTACTTT | 59.901 | 45.455 | 21.36 | 0.00 | 41.35 | 2.66 |
2629 | 3124 | 1.308998 | GCTACGGGCATGCAATTACT | 58.691 | 50.000 | 21.36 | 0.00 | 41.35 | 2.24 |
2650 | 3647 | 1.336795 | GCAATCCCGTTGTTTCCTTGG | 60.337 | 52.381 | 0.00 | 0.00 | 40.07 | 3.61 |
2699 | 3696 | 6.408662 | CCTTTTCCTTATCCTCTCCGATTTCT | 60.409 | 42.308 | 0.00 | 0.00 | 0.00 | 2.52 |
2703 | 3700 | 4.101741 | CACCTTTTCCTTATCCTCTCCGAT | 59.898 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
2704 | 3701 | 3.451178 | CACCTTTTCCTTATCCTCTCCGA | 59.549 | 47.826 | 0.00 | 0.00 | 0.00 | 4.55 |
2705 | 3702 | 3.451178 | TCACCTTTTCCTTATCCTCTCCG | 59.549 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
2778 | 3780 | 1.638679 | GGCCCCACTACCCCGTTATT | 61.639 | 60.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2832 | 3838 | 2.017752 | GCATGGGCGAAGAAGCTAC | 58.982 | 57.895 | 0.00 | 0.00 | 37.29 | 3.58 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.