>input_sequence_66753
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---------------ATGGCCGTGTACATCCGCCTGGACGACGCCGTGCGCGCGCGCCTCCGCGGGGACGGGGGT---GG
CACCAGCAGCGGCAGCGACCACGACGCCTCCGCCTGCCTCTCCGACCTCGTCCAGGCCTTCCTCGAGACGGACGCCGC--
-CGGCAACGGGGACGACGCGGCCGGGCCGGCCCCGAAAGGACGTGACGGGTACGACTCCGACGACGCGGACGGCGCCGCG
GAGGCGGCC---GCGTCCGTGCGGGAGCTGCTCGACCCGCCGGCCGCGGAGGACCCCTTCCGGATCAGGCTGGCGGCCGC
CGTGTCCGCGGCGCTGGACGCGGAGGCGCCGCTGCGGGGGCACGGCGCGGCGTTCCGGCGCGCGGTGATGCGGCGGCTGC
GTGCCGCTGGGTACGACGCCGGCGTGTGCAGGTCGCGCTGGGAGACGTGCGGCAACCTGACGGCCGGGACGTACGAGTAC
ATCGACGTGGTCGTGCCGGCCGCGGGGAAGGCGGCGAGGTACATTGTGGACGCGGACTTCCGGGCGGGGCTGGAGGTGGC
GCGCGCGACGGCGGAGTACGCGGTCGTCGTGGCCGCGGTGCCGGCCAAGGCGGTGGTCTCGCGGGAGGAGGCCGTGGGGC
GCGCCGTGCGCGTGGCCGCCGACGCCGCGCGCCGGTCGCTCCGGGCGCACGGCCTGCACGTGCCGCCGTGGCGCAAGAGC
CGGTACATGCTCGCCAAGTGGCTGGGGCCCTACAAGCGGTCGCCGTCCT---CCTCATCATCGGCGTCCGGCGCAATGCC
GGCGCCCGGCGGCCCCGGGATGGACATCATCAAGTGCCGCGCCGTCGGGTTCTTCCCGTCCCAGACGGCCGCGCCGGCGG
CGAGGATCAAGTAA------------------------------------------------------------------
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>chr3B_1_TraesCS3B01G456400
AGGATAGATGCCGCGGCATATCCATATCCGGAAGCGGAACAGGAACGGGGGGCGCC-------ATGGCCCCGCCCCTCGC
CTCGGGTATATCCTCCTGCCTCCCTGCTGCCTGCTACGTTGATGCCCCTCCCCAACTCCAATTCTTTTCAGGACGCGCAC
AG---CACAGGGCACTCACTCGTGAATGAAAGTTTCAACGAGGAGACGTTCCGCCTAATCGGCCAGCGAATATGCCATGC
GATAGTGCCACACCGTGAACCCGTTCGCGGTCAAGGAGGGTCACCTAAAAAACTTTTAAACGCTCTTCTAGAAGAGACGC
GGTACTACTGATAATCCGATGCAAATTACCCCCACTGCTATCACGACTAGCGTTTCCTCGATCGTTATCGCAGCAGTACC
ATG----TTTTCAACGCCGAAGTAAACGAAAACGTAGACGTCGCGTTCGTTGGCTCGATCGGATCCACGTGTTTATGATA
TCATGAGGCCACGGCTCTGGCATGTCCAGAG-------------------CATGGATGGGGCTGGAACATGAGAT-GAGC
TACTAGTAAACGTTTCTCCTTAACATTGTCAGCCATCGGTCAATCAACCCACAAACAAACGTGGAGCTGGTTAATCCAGT
GCGCGGGCGTGGCATGGCACGATTAAATTAGCTTAGCTTAGCTTAGCTTTGGACGTGAGTACGTGACTATTATGGGCACC
TAAAG-----CTGCCCCCACAACCTCGTAGCACCGGACCGGAGGG-----GCATATTCCAGGGCTCAATTCT-----CTC
GCAGCCCGCGGCGCCCAGAAGACAACAATGGTAATCAATCCAAGCGTCACCTACTAACGCAAGCACGCAAAGGTTAATCC
GCCGAATAAACCCTTCCGCCAACCACCCTATAAAGCCGCGGCCCGCCAGCGTCAACCTCTGTCCTCCCGGCACCGCACAC
CGCAACCTCTAAGCTCAAACCACAACGCGCACC---CACACAAAGCCGAGAGCGCGCTCTCGCTCGCTCGCCGGCGG---
CGACAGAGGACAGGCATGGCCGTGTACATCCGCCTGGACGACGCCGTGCGCGCGCGCCTCCGCGGGGACGGGGGT---GG
CACCAGCAGCGGCAGCGACCACGACGCCTCCGCCTGCCTCTCCGACCTCGTCCAGGCCTTCCTCGAGACGGACGCCGC--
-CGGCAACGGGGACGACGCGGCCGGGCCGGCCCCGAAAGGACGTGACGGGTACGACTCCGACGACGCGGACGGCGCCGCG
GAGGCGGCC---GCGTCCGTGCGGGAGCTGCTCGACCCGCCGGCCGCGGAGGACCCCTTCCGGATCAGGCTGGCGGCCGC
CGTGTCCGCGGCGCTGGACGCGGAGGCGCCGCTGCGGGGGCACGGCGCGGCGTTCCGGCGCGCGGTGATGCGGCGGCTGC
GTGCCGCTGGGTACGACGCCGGCGTGTGCAGGTCGCGCTGGGAGACGTGCGGCAACCTGACGGCCGGGACGTACGAGTAC
ATCGACGTGGTCGTGCCGGCCGCGGGGAAGGCGGCGAGGTACATTGTGGACGCGGACTTCCGGGCGGGGCTGGAGGTGGC
GCGCGCGACGGCGGAGTACGCGGTCGTCGTGGCCGCGGTGCCGGCCAAGGCGGTGGTCTCGCGGGAGGAGGCCGTGGGGC
GCGCCGTGCGCGTGGCCGCCGACGCCGCGCGCCGGTCGCTCCGGGCGCACGGCCTGCACGTGCCGCCGTGGCGCAAGAGC
CGGTACATGCTCGCCAAGTGGCTGGGGCCCTACAAGCGGTCGCCGTCCT---CCTCATCATCGGCGTCCGGCGCAATGCC
GGCGCCCGGCGGCCCCGGGATGGACATCATCAAGTGCCGCGCCGTCGGGTTCTTCCCGTCCCAGACGGCCGCGCCGGCGG
CGAGGATCAAGTAAAAGCTCCTCGGCACCGCTAATTCTCCGCGCGCGTCTCTGGAAGATGTCATAGTCTGATAAGTAGAT
GTAGAGAGATGATCGATGAGTTGGAGCGTGCCTCGAATTCGTTT-TTGTACAAACATTTTTGGTCTACCTAGACTATG--
--AAAGGAGCAAATTGTTGGTCCATCCACCATCCACATGCATGATCGAAACCGTCAACCTTTCAAGCAGCCATGG--CAC
GATTAAACTATGGATCTTGGTGAGCTGGAAACATAAAGGCGTGCGCATAAGATTTAATAGTAACAAAATAAAATTTAAAG
AGAGA----TGAAAAGGAGCCATGAAATGGTGGACGCGGCGGGCGGGCGGGCGGGTGTAGGCGGATTAGCATGGGTCGAA
TTACGGCATTACTTTTATCAATCTGCG-------GTGGTTGTCGGCGACGAGATCGTAGTACTAGTAATATAAGGATCAA
CCAAGCAAGCAACATATGTTTAGTATTATCCTAAACGAATCAGGCGAGGTGGAATTCTGGGTGTGATCTTTCGTATGATA
TTTTGTCGCCGCAAGGATCCTGATGAAACACTGCCCTCAAC---------------------------------------
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--------------------------------------------------CCTCCTCCTCTCTCTCTCTTGCGTGTACAT
TTTTCAGGCTTAAACAAGACTGTAGGAGCACCAAAAAGTAAAAAAAAAAATGAGACCAACTCAAAAGCTAACCCTCGTTG
GCATTTATTTATAGAAGAAACTTCCCGAGCACCCCACGTCCAAGTAGGGTGGGCTGGCAGCAACCACTGTAGGAGCACCA
AAAAG---------------------------------------------------------------------------
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---------------------------TAATTGCATGCCCGTAGCACCAAGGAAACAACGGGATTGCCATTTCGGTAGAT
GATCAAACAGTAGTTAGAAATC-----GGAGAGGATAAGGAAAAGGTGATGGAGTTGGGGCCGGAGGAAATAATGCCGGG
TGTGGTCCATGGTTAGATGAATAACGGGGTAGTGG----GGCCAGCGACGAGACCTGTCCACTCGAGCGCGCGTCGCGTA
GCTTCTTCG----CCCATGCGCCACTCGCGGGGCCC
>chr3D_6
-----AGATGCCGCGGCATATCCATATCCGGAAGCGGAACAGGAACGGGGGCGCCATGGCCGGATGGCCCCGCCCCTCGC
CTCGGGTATATCCT-----------GCTGCCTGCTACGTTGATGCCCCGCCCCAACTCCAATTCTTTCGAGGACGGGCGC
CGGGCCACAGGGCACTCG--------TGAAAGTTTCAACCAGAAGACGTTCCGCCTAATCGTAATCGAATATGCTG----
----GTACCAACCCGTGAACCCGCTCTTGGTCAAGGAGGGTCACCTAAAAAACTTATATACGTTCTTCTAGAAGAGACGC
GGTACTACTGATAATCCGATGCAAATTACCGCCACTGCTATCACGGCCAGCGTTTCCTCGATCGTTATCATCTTTGTAGT
ACCATTCTTTTCAACGGTGAAGTAAACGAAAACGTAGACGTCGTGTTCATTGGCACCATCGGATCCACGTGTTCAG----
------GGCCACGGCTTTGACATACTGTGGCGGCGGGCAAGCTGTCGAACCACGGTTGGGGCTGCAAGAAAAAAACGAGC
TACCAGTAAACGTTTCTCTTCAACATTGTCAGCCATCAGTCAATGGACTCACAATCAGACGTG-----------------
----------------GCACCATTAAACTAGCTTAGCTTTGG------------------ACGTGACTATTTTGGGCACC
TAAACCTGCCCTGCCCCCACAACCTCGTAGCACCGGACCGGACCGGAGGAGCATATTCCAGGGCTCAATTCT-----CTC
ACAGCCCGCGGCGTCCAGAAGACAACAATGGTAATCAATCCGCGCGTCACCTACTAACGCAAGCACGCCAAGATTAATCC
GCCGAATAAACCCTTCGGCCAACCGCCCTATAAAGCCGTGGCCCGCGAGTGTCAACCTCTGTCCTCCCGGCACCGCACAC
CGCAACCTCCAAGTTCCAACCACAACTCGCCGCGCACACACAAAGCCGAGAGCGCGCTCTCGCTCGC----CGGCGG---
CGACAGAGGACAGGCATGGCCGTGTACATCCGCCTCGACGACGCCGTGCGCGCGCGCCTCCGCGGGGACGGGGGCGGCGG
CACCAGCAGCGGCAGCGACCACGACGCCTCCGCCTGCCTCTCCGACCTCGTCCAGGCCTTCCTCGAGACGGACGCCGCCG
GCGGCAACGGCGACGACGCGGCCGGGCCGGCCCCGAAAGGGCGTGACGGGTACGACTCCGACGACGCGGACGGCGCCGCG
GAGGCGGCCGCGGCGTCCGTGCGGGAGCTGCTCGACCCGCCGGCCGCGGAGGACCCCTTCCGGATCAGGCTGGCGGCCGC
CGTGTCCGCGGCGCTGGACGCGGAGGCGCCGCTGCGGGGCCACGGCGCGGCGTTCCGGCGCGCGGTGATGCGGCGGCTGC
GTGCCGCCGGGTACGACGCCGGCGTGTGCAGGTCGCGCTGGGAGACGTGCGGCAACCTGACGGCCGGGACGTACGAGTAC
ATCGACGTGGTCGTGCCGGCCGCGGGGAAGGCGGCGAGGTACATTGTGGACGCGGACTTCCGGGCCGGGCTGGAGGTCGC
GCGCGCGACGGCAGAGTACGCGGTGGTCGTGGCCGCGGTGCCGGCCAAGGCGGTGGTCGCGCGGGAGGAGGCCGTGGGGC
GCGCCGTGCGCGTGGCCGCCGACGCCGCGCGCCGGTCGCTCCGGGCGCACGGCCTCCACGTGCCGCCGTGGCGCAAGAGC
CGCTACATGCTCGCCAAGTGGCTCGGGCCCTACAAGCGGTCGCCGTCGTCCACCTCGTCCACGGCGTCCGGGGCAATGCC
GGCGCCCGGTGCCACCGGGATGGACGTCATCAAGTGCCGTGCCGTCGGGTTCTTCCCGTCCCAGACGGCCGCTCCGGCGG
CGAGGATCAAGTA---GCTGCT--------------------------GGAAGATCGATGTCA------------TAGAT
GTAGAGAGATGATCGATCAGTTCGAGCGTGCCTCGAATTCGTTT-TTGTACAAACATTTTTGGTCTAGATTATT----AT
GAAAAAGAGCAAATTGTTGGT-------CCATCCACATGCATGATCGAAATCGTCAACCTTG-AAGCAGCCACGG--CGC
GATTAAACTATCGATCTTGGTCAGCTGGAAACATAAAGGCGTGCACAAAGATT-------TAACAAAATAAATTTTAAAA
AGAGAAGGGTGAAAAGGAGCCATGAAATGGTGGACGCGGCGGGCGGGCA----GGTGTAGCCGGATTAGCATGGGTCGAA
TGATGGCATTAC-TTTATCACTCTGCG-------GTGGTTGTCGGCGACGAGATCGTACTAATATACAACGCGATCG---
-----------ACATATGTTTAGTGTTATCCTAAACGAATCAAGCTGGACGGAATTCTGGGCGTGATCTTTCGTGCGATA
TTTTGTCTGGGCAAGGATCCTGATAAGCACATGGCGTTCTAGCTAGCCTTCACGAAAACACTGGCCTGCGCTGTGCA---
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-TTTCAGGCTTAAACAAGACTGTAGGAGCACCAAAAAGTAACCGCATGCCC-----------------------------
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-------------------------------------CCCGTAGCATCAAGGGAACAACGGGATTGCCATTTCGGTAGAT
GATGAAACAGTAGTTGGATTGGAGAATGGAGAGGATAAGGAAAAGGTGATGGAGTTGGGGGAGGA--AAATAATGCCGGG
TGTGGTCCATGGTTAGATGGATAACGGGGTAATGGGGCCGGCCAGCGACAAGACCTGTCCACTCGAGCGCGCGTCGCCTA
GCTTCCTCG----CCCATGCGCCACTCGCGGGACCC
>chr3A_667
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------------------------------------------------------------ACGTGACTATTTTGGGCACC
TAGACCTGCCCAGCTCCCACAACCTCGTAGCACCGGACCGGAGCC--GGAGCATATTCCCGGGCTCAATTCAATTCCCTC
ACAGCCCGCGGCGTCCAGAAGACAGCAATGCTAATCAATCCGCGCCTCACCTACTAACGCAAGCACGCACGGGTTAATCC
GCCGAATAAACCCTTCCGCCAACCACCCTATAAAGCCGCGGCCCGCGAGTGTCAACCTCCGTCCTCCCGGCACCGCGCAC
CGCAACCTCCAGCTCCAAGTTCA---------CGCACACACAAAGCCCAGAGCGCGCTCTCGCTCGCTCGCCGGCGGCCA
CGACAAAGGGCAGACATGGCCGTGTACATCCGCCTCGACGACGCCGTGCGCGCGCGCCTCCGCGGGGACGGGGGCGGC--
-ACCAGCAGCGGCAGCGACCACGACGCCTCCGCCTGCCTCTCCGGCCTCGTCCAGGCCTTCCTCGAGACGGACGCCGCCG
CCGGCGCCGGGGACGACGCGGGCGGCCCGGCCCCGAAAGGGCGTGACGGGTACGACTCCGACGACGCGGACGGCGCCGCG
GAGGCGGCCGCGGCGTCCGTGCGGGAGCTGCTCGACCCGCCGGCCGCGGAGGACCCCTTCCGGATCAGGCTGGCGGCCGC
CGTGTCCGCGGCGCTGGACGCGGAGGCGCCGCTGCGGGGCCACGGCGCGGCGTTCCGGCGCGCGGTGATGCGGCGGCTGC
GCGCCGCCGGGTACGACGCCGGCGTGTGCCGGTCGCGCTGGGAGACGTGCGGCAACCTGACGGCCGGGACGTACGAGTAC
GTCGACGTGGTCGTGCCGGCCGCGGGGAAGGCGGCGAGGTACATTGTGGACGCGGACTTCCGGGCCGGGCTGCAGGTGGC
GCGCGCGACGGCGGAGTACGCGGTGGTCGTGGCCGCGGTGCCGGCCAGGGCGGTGGTCGCGCGGGAGGAGGCCGTGGGGC
GCGCCGTGCGCGTGGCCGCCGACGCCGCGCGCCGGTCGCTCCGGGCGCACGGCCTCCACGTGCCGCCGTGGCGCAAGAGC
CGCTACATGCTCGCCAAGTGGCTCGGGCCCTACAAGCGGTCGCCGTCCT---CCTCATCACCAGCGTCCGGGGCAATGCC
GGCGCCCGGCACCACCGGGCTGGACGTCATCAAGTGCCGCGCCGTCGGGTTCTTCCCGTCCCAGACGGCCGCGCCGGCGG
CGAGGATCAAGTA---GCTCCTCGGCACCGTTGATTCTCCGCGTCCCCGGAAGATCGATGCCA------------TAGAT
GTAGAGAGATGATCGATCCGTTCGAGCGAGCCTCGAATTCGTTTCTTGTACAAACAATTTTGGTCTAGATTATATATAAT
GAAAAAGAGCGAATTGTTCTT-------CCATCAACATGCATGATCGATATCGTCAACCTTG-AAGCAGCCATGGGGCAC
GATTAAACTATGGATCTTGGTCAGCTGGATACATAAAAGCGTGCGCAAAGATT-------AACAGAATGAAAATTAAAAG
AGACGG----GAAAAGGGACCATGGAATGGTGGACGCGGCGGGCGGGCA----GGTGTAGCCGGATTGGCATGGGTCGAA
TGATGGCATTAC-TTTATCACTCTGCGCTCTGCGGTGGTTGTCGGCGTCGAGATCGTACTAGTAATATACT---------
CCGAGCAAGCAAGATATGTTTAGTGTTATCCTAAACGAATCAGGCGAGGCGGAATTCTGGACGTGATCTTTCGTACAAAT
TTTTGTCTGGGCTAGGATCTTGATAAGCACATGGCGCGCTCTCTCTACATTTCAGCCTTGCAAACAAGATTACAGTAAGT
ACTGAGTGTACAATCGGACCTCTCAAACCCGTCTCATACATCTGGGTAGAACGCTCGGTCATCGTCTGGTCAAAAAATTT
CGATTCAGATGGGTCTGTCAGACGACCCTCAAATGCTTGGGTTGGCCGACATCCTCCATATCTAGCCCAAACATGAGGCA
GACATGAAGGCGTCCGGGCACGCCTGCCACGTCGGCCTGACGAAGGGGCTTCACACGAAAATGCCCGAAAACCCGATGGT
CTGAAGGACGCCGCGTGGCGCTGTCCCGGCTTGTCGTCCAAGACAAAATCCGGCTATTTAAGCCGGCCGGTGTCCCGCAA
CCCTAACCCATCCCCCTTCTCCCCTCTCCGCGCCGCCAGTCCGAGCCCATCCGCCTCCTCCCTCTCCCGCTCCGGCGCTC
TGCCCAAGCTCCGGCACTTCGCCATGGTCCGGAGCAAGATCACCTACTATGCCATGCTAACGCCGGAGCACGGCTACGAG
ATCCAGCAGCTGATCCAGGCGAGGGAGGCCGCACGCGCCGCCCGCATAGCTGTCGGGCTACCTCCAGACTCGCCGTAGCC
GGAGGAGGAGATGGCTCCGGTGGAGGTGGAGGAGGCGGAGGAGCCGGACCAGCAACTGTCGCCCTTCAACATGGAGCAGG
CAGAGGGGGAGTTTGCCGTCACCTAGTCCGGCAAGATAGCGGAGCAGCAGGCTATCCTGGAGTCCATGCAGGATGATGCC
TATTTGAAGGCCAACCGGGCGTTCCTTAAGCGGGAGCAGACGGAGTCCAACGCGCTCTTCGCCGAGCTCGACGCGAAGGA
GGCCGGAGCGGAGCAGCCGGAGCTGCCGCTGCCGCTCATGCTGCTGGAGTTGGGCGCCGAGATCATTGTGATCTCCGACG
AGGAGTGGTTAGGACCGATGTAGTACGCAAGTTTTACTTCTTTTTGTATGTTTTTGTATGAATATAAAAATTGAGTATGT
GATGTCCGGACGCAACAAGTGAAATTTGATGTGTGTCGAGTCACTGCCCGCGTACGCGCCCGGGACATTTGAGGGGCCAG
ACTTGCCATATGTGGGTGTAGATGCTCTAACTGCATGACCGTAGCATCAAGGAAACAACGGGATTGCCATTTCGGTAGAT
GATCATACAGTAGTTGGGATC------GGAGGGGATAAGGAAAAGGTGATGGAGTTGGGGTCGGAGGAAATAATGCCGAG
TGTGGTCCAGGGTTAGATGGATAACGGGGT-------------AGCGACGAGAGCTGTCCACTCGAGCGCGCGTCGGATG
GCTTCTTCGTCCACCCATGCGCCACTCGCGGGACCC
>SNPs
SSSSS----------------------------------------------SSS-S------------------------
--------------SSSSSSSSSSS-----------------------S------------------SS------S--S-
S----------------SSSSSSSSS-------------S--S------------------SSSSSSS-SSSSSSSSSSS
SSSS--S---SS-----------S--SS---------------------------S--S---S-----------------
------------------------------S--------------S-S---------------------SSSSSS---SS
-SS-------------SS-------------------------S----S-----S-S----------------S-SSSSS
SSSSSS----------S--S---SSSSS-SS---------------------S--S--------S--S-SS-S-S-----
---S--------------S-S----------------S------SS--S-----S--S-----SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS----S------S-----------S-SSSSSSSSSSSSSSSSSSS-----------S--------
----S--------------------------------------S------------------------------------
S------------S---------------------------SS-------------------------------------
----------------------------------------------S--S------------------------------
---------S---S------------S---SS------------------------------------------------
-----------------------------------S--------------------------------------S-----
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----------------------------------------S---------------------------------------
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---------------------------------------S----------------------------------------
-------S------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
------------------------S---------------------------------S---------------------
-------------------------------------------------------S------------------------
--S--------------------S------------------------------------S----------S--------
-----------S-S-----------S------------------------------------------------------
-------------SSS--------------S-S----------SS-SSSSSS-SSS-------SSSSSSSSSSSS-----
-----------------S----S--------------------------------------------SS-SSSS---S--
-----S---------------SSSSSSS----------------------S----------SS-----------------
---------------------S-------------------------S-SSS-SSSSSSS--------------------
------------------------------------------------SSSSS-------S-------------------
-S-S--------S-------S-------------------------------------S--S--S---SS-SSSSSSSSS
--S---------------------S------------------------S-----------S-------------S----
-------SSS--------------S-SSSSS--S-S-SSS----------------------------------------
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----------------------------------------------------S-------S-----S-SSS-SS-SS-SS
------------------------------------------SSS-SS-SSSSSSS-S-SSSSSSSSSS-SSS--SSSS-
SSSSSSSSSSSS-SSSSSSSSSSSSS-SS-S-S-SSSSSS-SS-S-SS-SS-S-S---SS-SS---SSS-S-SS-S-S-S
SS-S----------------------------------------------------------------------------
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------------------------------S---------------S---------------------------------
---------------S---SSS--------------------------------------S-------------------
-------------------S-----------S---------------------------------------------S--
--------------------------------S---
>forward_366
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--------------------------TACCCCCACTGCTATCACGA----------------------------------
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>reverse_2131
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--------------------------------------------------CCGTCAACCTTTCAAGCAGC----------
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