Multiple sequence alignment - TraesCS3B01G456100
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G456100
chr3B
100.000
3129
0
0
1
3129
697576281
697579409
0.000000e+00
5779.0
1
TraesCS3B01G456100
chr3B
86.217
1792
115
56
814
2528
808013071
808014807
0.000000e+00
1820.0
2
TraesCS3B01G456100
chr3B
95.103
388
17
1
2734
3121
808015196
808015581
7.420000e-171
610.0
3
TraesCS3B01G456100
chr3B
92.488
213
14
1
2525
2737
808014860
808015070
1.410000e-78
303.0
4
TraesCS3B01G456100
chr6B
93.835
811
38
3
4
807
57331517
57332322
0.000000e+00
1210.0
5
TraesCS3B01G456100
chr2D
92.734
812
51
3
4
807
634150936
634151747
0.000000e+00
1166.0
6
TraesCS3B01G456100
chr2D
96.392
194
7
0
1160
1353
186646727
186646920
1.400000e-83
320.0
7
TraesCS3B01G456100
chr5A
91.646
814
60
3
5
811
9602944
9603756
0.000000e+00
1120.0
8
TraesCS3B01G456100
chr7A
91.822
807
59
2
5
804
719324302
719325108
0.000000e+00
1118.0
9
TraesCS3B01G456100
chr3A
91.523
814
61
3
5
811
700932059
700932871
0.000000e+00
1114.0
10
TraesCS3B01G456100
chr3A
88.863
862
58
24
1640
2486
730068972
730069810
0.000000e+00
1026.0
11
TraesCS3B01G456100
chr3A
84.515
691
59
29
867
1530
730068052
730068721
9.460000e-180
640.0
12
TraesCS3B01G456100
chr3A
95.153
392
14
3
2734
3122
730070304
730070693
5.740000e-172
614.0
13
TraesCS3B01G456100
chr3A
91.176
170
13
1
2521
2690
730070002
730070169
2.430000e-56
230.0
14
TraesCS3B01G456100
chr1A
92.174
575
35
4
246
812
57760498
57759926
0.000000e+00
804.0
15
TraesCS3B01G456100
chr3D
85.201
723
71
27
1768
2484
600641022
600641714
0.000000e+00
710.0
16
TraesCS3B01G456100
chr3D
81.111
900
62
56
896
1724
600640085
600640947
3.430000e-174
621.0
17
TraesCS3B01G456100
chr4A
91.617
501
35
2
314
807
10231459
10230959
0.000000e+00
686.0
18
TraesCS3B01G456100
chrUn
91.408
419
27
4
413
823
334421968
334421551
1.630000e-157
566.0
19
TraesCS3B01G456100
chrUn
94.007
267
16
0
145
411
463745023
463744757
3.760000e-109
405.0
20
TraesCS3B01G456100
chr2B
96.392
194
7
0
1160
1353
239846443
239846636
1.400000e-83
320.0
21
TraesCS3B01G456100
chr2A
95.939
197
7
1
1160
1356
199086918
199087113
5.040000e-83
318.0
22
TraesCS3B01G456100
chr6D
84.244
311
32
8
1232
1533
202662355
202662657
1.420000e-73
287.0
23
TraesCS3B01G456100
chr6D
94.444
72
2
2
1286
1355
297179790
297179719
3.300000e-20
110.0
24
TraesCS3B01G456100
chr5D
92.424
66
3
2
1286
1349
140961549
140961484
3.320000e-15
93.5
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G456100
chr3B
697576281
697579409
3128
False
5779.0
5779
100.000000
1
3129
1
chr3B.!!$F1
3128
1
TraesCS3B01G456100
chr3B
808013071
808015581
2510
False
911.0
1820
91.269333
814
3121
3
chr3B.!!$F2
2307
2
TraesCS3B01G456100
chr6B
57331517
57332322
805
False
1210.0
1210
93.835000
4
807
1
chr6B.!!$F1
803
3
TraesCS3B01G456100
chr2D
634150936
634151747
811
False
1166.0
1166
92.734000
4
807
1
chr2D.!!$F2
803
4
TraesCS3B01G456100
chr5A
9602944
9603756
812
False
1120.0
1120
91.646000
5
811
1
chr5A.!!$F1
806
5
TraesCS3B01G456100
chr7A
719324302
719325108
806
False
1118.0
1118
91.822000
5
804
1
chr7A.!!$F1
799
6
TraesCS3B01G456100
chr3A
700932059
700932871
812
False
1114.0
1114
91.523000
5
811
1
chr3A.!!$F1
806
7
TraesCS3B01G456100
chr3A
730068052
730070693
2641
False
627.5
1026
89.926750
867
3122
4
chr3A.!!$F2
2255
8
TraesCS3B01G456100
chr1A
57759926
57760498
572
True
804.0
804
92.174000
246
812
1
chr1A.!!$R1
566
9
TraesCS3B01G456100
chr3D
600640085
600641714
1629
False
665.5
710
83.156000
896
2484
2
chr3D.!!$F1
1588
10
TraesCS3B01G456100
chr4A
10230959
10231459
500
True
686.0
686
91.617000
314
807
1
chr4A.!!$R1
493
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
549
551
0.388649
CTGCACTACCGTGGTGTCTC
60.389
60.0
15.57
1.26
41.51
3.36
F
1574
1747
0.394192
CACTCTCTCAACAGTGGCCA
59.606
55.0
0.00
0.00
37.04
5.36
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2058
2311
0.446222
CGCAGGTCCCAAACATTACG
59.554
55.0
0.0
0.0
0.0
3.18
R
2636
3066
0.749454
GGTTGGCAGATTCCAGCGAT
60.749
55.0
0.0
0.0
38.1
4.58
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
40
41
2.902457
GCCTTTTCCCCCGACTGGA
61.902
63.158
0.00
0.00
37.49
3.86
255
256
6.449698
AGGTAAACAGAAATTGCATGAAGTG
58.550
36.000
0.00
0.00
0.00
3.16
330
331
9.231297
CCTCCTGAGAAGTACATTAAAATCAAA
57.769
33.333
0.00
0.00
0.00
2.69
350
351
3.610040
AGTTGATGCGTCCTTCATACA
57.390
42.857
2.83
0.00
0.00
2.29
359
360
2.233922
CGTCCTTCATACACTCCTTGGT
59.766
50.000
0.00
0.00
0.00
3.67
373
374
4.202461
ACTCCTTGGTTTTATCTGCTGTGA
60.202
41.667
0.00
0.00
0.00
3.58
416
417
2.105134
TGGGTGTTGTGTTATTCTCGGT
59.895
45.455
0.00
0.00
0.00
4.69
461
462
1.139853
GGATGCGGAGGAATCTGAAGT
59.860
52.381
0.00
0.00
0.00
3.01
469
470
1.073923
AGGAATCTGAAGTTTGGGCGT
59.926
47.619
0.00
0.00
0.00
5.68
537
539
2.234661
CTGGTGGAATCTGACTGCACTA
59.765
50.000
10.44
3.77
35.63
2.74
549
551
0.388649
CTGCACTACCGTGGTGTCTC
60.389
60.000
15.57
1.26
41.51
3.36
639
641
6.156748
TGACAGCTTTTGAGTCTTGTACTA
57.843
37.500
3.17
0.00
39.07
1.82
710
718
4.759183
GCTAGAATCCATGGTGATTTCCTC
59.241
45.833
12.58
0.00
35.15
3.71
718
726
5.488919
TCCATGGTGATTTCCTCTTCTTAGT
59.511
40.000
12.58
0.00
0.00
2.24
868
876
0.956633
AGAACCACACTGCTGCATTG
59.043
50.000
17.14
17.14
0.00
2.82
875
883
4.409218
CTGCTGCATTGCCGCGTT
62.409
61.111
18.28
0.00
41.50
4.84
876
884
4.403137
TGCTGCATTGCCGCGTTC
62.403
61.111
18.28
0.00
41.50
3.95
877
885
4.107051
GCTGCATTGCCGCGTTCT
62.107
61.111
9.32
0.00
33.35
3.01
878
886
2.099062
CTGCATTGCCGCGTTCTC
59.901
61.111
4.92
0.00
33.35
2.87
879
887
3.386867
CTGCATTGCCGCGTTCTCC
62.387
63.158
4.92
0.00
33.35
3.71
880
888
3.127533
GCATTGCCGCGTTCTCCT
61.128
61.111
4.92
0.00
0.00
3.69
881
889
3.093278
CATTGCCGCGTTCTCCTC
58.907
61.111
4.92
0.00
0.00
3.71
882
890
2.509336
ATTGCCGCGTTCTCCTCG
60.509
61.111
4.92
0.00
0.00
4.63
892
900
1.149148
GTTCTCCTCGTTGCCACTTC
58.851
55.000
0.00
0.00
0.00
3.01
916
924
1.442148
GGCGTGGGTCTGGTCTATC
59.558
63.158
0.00
0.00
0.00
2.08
954
962
1.687368
GGCCCGAGGTTTCTCTAGGTA
60.687
57.143
0.00
0.00
37.86
3.08
955
963
2.317973
GCCCGAGGTTTCTCTAGGTAT
58.682
52.381
0.00
0.00
37.86
2.73
956
964
3.494332
GCCCGAGGTTTCTCTAGGTATA
58.506
50.000
0.00
0.00
37.86
1.47
970
978
7.759465
TCTCTAGGTATAATAAATTCGCTCGG
58.241
38.462
0.00
0.00
0.00
4.63
1369
1412
1.002011
GCTCCACCCTCTTTGTCCC
60.002
63.158
0.00
0.00
0.00
4.46
1376
1419
1.275421
CCCTCTTTGTCCCTCCCTCC
61.275
65.000
0.00
0.00
0.00
4.30
1378
1421
1.612442
TCTTTGTCCCTCCCTCCGG
60.612
63.158
0.00
0.00
0.00
5.14
1407
1450
7.665145
TGTTCCATGATTAAGTGTTCTGATGAA
59.335
33.333
0.00
0.00
0.00
2.57
1410
1453
8.048514
TCCATGATTAAGTGTTCTGATGAATCA
58.951
33.333
0.00
0.00
36.55
2.57
1419
1469
4.032786
TGTTCTGATGAATCATTACGCACG
59.967
41.667
0.00
0.00
36.02
5.34
1420
1470
4.040445
TCTGATGAATCATTACGCACGA
57.960
40.909
0.00
0.00
36.02
4.35
1446
1496
6.946229
AAACACATACGAGCAGTAAGTAAG
57.054
37.500
0.00
0.00
35.33
2.34
1448
1498
6.748333
ACACATACGAGCAGTAAGTAAGTA
57.252
37.500
0.00
0.00
35.33
2.24
1456
1506
5.692204
CGAGCAGTAAGTAAGTATGGAATGG
59.308
44.000
0.00
0.00
0.00
3.16
1484
1546
6.946165
TCATTGTGATGCAAACAATTGTTTC
58.054
32.000
29.21
23.05
43.94
2.78
1486
1548
5.970140
TGTGATGCAAACAATTGTTTCTG
57.030
34.783
29.21
22.05
45.54
3.02
1493
1555
4.491591
GCAAACAATTGTTTCTGTTTTGCG
59.508
37.500
29.21
17.42
45.54
4.85
1507
1569
1.982660
TTTGCGACAAACCCATACCA
58.017
45.000
1.63
0.00
0.00
3.25
1512
1574
3.322254
TGCGACAAACCCATACCAAATTT
59.678
39.130
0.00
0.00
0.00
1.82
1520
1582
6.865834
AACCCATACCAAATTTTATCAGCA
57.134
33.333
0.00
0.00
0.00
4.41
1547
1720
3.428452
GCATGTTGCACATATCACTGCTT
60.428
43.478
0.00
0.00
44.26
3.91
1565
1738
1.471829
TTCGCTGGCCACTCTCTCAA
61.472
55.000
0.00
0.00
0.00
3.02
1574
1747
0.394192
CACTCTCTCAACAGTGGCCA
59.606
55.000
0.00
0.00
37.04
5.36
1607
1805
5.476614
CAGTTACCTGTTCCTTGGTACTAC
58.523
45.833
0.00
0.00
38.40
2.73
1638
1836
4.242475
CGCAGATCAGTTAACACTTGGTA
58.758
43.478
8.61
0.00
0.00
3.25
1669
1885
3.781079
TCTAATTTGCATTTCCAGCGG
57.219
42.857
0.00
0.00
33.85
5.52
1677
1893
1.733389
GCATTTCCAGCGGTGATGTTG
60.733
52.381
17.83
9.43
0.00
3.33
1698
1914
2.853594
GTGACCGCATAATGCAAACATG
59.146
45.455
0.00
0.00
45.36
3.21
1727
1944
9.376075
CTCGTTAATCTCATAATATCTGCCATT
57.624
33.333
0.00
0.00
0.00
3.16
1741
1973
9.590451
AATATCTGCCATTTATTCAGTTTTGTG
57.410
29.630
0.00
0.00
0.00
3.33
1748
1983
6.645827
CCATTTATTCAGTTTTGTGCATGACA
59.354
34.615
0.00
0.00
0.00
3.58
1749
1984
7.332430
CCATTTATTCAGTTTTGTGCATGACAT
59.668
33.333
0.00
0.00
33.40
3.06
1750
1985
7.640616
TTTATTCAGTTTTGTGCATGACATG
57.359
32.000
11.27
11.27
33.40
3.21
1786
2034
6.294397
CGTGTTTAGTAGGTCCTCAGTTTACT
60.294
42.308
0.00
0.00
0.00
2.24
1789
2037
6.830873
TTAGTAGGTCCTCAGTTTACTCAC
57.169
41.667
0.00
0.00
0.00
3.51
1794
2042
4.221703
AGGTCCTCAGTTTACTCACTCATG
59.778
45.833
0.00
0.00
0.00
3.07
1796
2044
5.511545
GGTCCTCAGTTTACTCACTCATGTT
60.512
44.000
0.00
0.00
0.00
2.71
1799
2047
7.012421
GTCCTCAGTTTACTCACTCATGTTTTT
59.988
37.037
0.00
0.00
0.00
1.94
1845
2093
1.394917
GTATCTCTTGTGCCGTGCTTG
59.605
52.381
0.00
0.00
0.00
4.01
1884
2136
0.974010
AATCCCACAGCCAGCCATTG
60.974
55.000
0.00
0.00
0.00
2.82
1890
2143
0.675633
ACAGCCAGCCATTGTTGTTC
59.324
50.000
0.00
0.00
0.00
3.18
1892
2145
1.274167
CAGCCAGCCATTGTTGTTCAT
59.726
47.619
0.00
0.00
0.00
2.57
1897
2150
4.487948
CCAGCCATTGTTGTTCATACTTG
58.512
43.478
0.00
0.00
0.00
3.16
1902
2155
6.015519
AGCCATTGTTGTTCATACTTGCTAAA
60.016
34.615
0.00
0.00
0.00
1.85
2012
2265
2.010145
TGGATTTAGCAGCGTCTGTC
57.990
50.000
8.32
2.31
33.43
3.51
2013
2266
1.550524
TGGATTTAGCAGCGTCTGTCT
59.449
47.619
8.32
8.20
33.43
3.41
2014
2267
1.929836
GGATTTAGCAGCGTCTGTCTG
59.070
52.381
8.32
0.00
33.43
3.51
2015
2268
2.611518
GATTTAGCAGCGTCTGTCTGT
58.388
47.619
8.32
0.18
33.43
3.41
2058
2311
7.324178
ACCATGAGTATGTTCTAGACTGAAAC
58.676
38.462
0.00
0.00
29.22
2.78
2076
2329
1.530323
ACGTAATGTTTGGGACCTGC
58.470
50.000
0.00
0.00
0.00
4.85
2276
2539
2.158971
CCAGTTGTTTTTCTGGGTTGGG
60.159
50.000
3.58
0.00
45.11
4.12
2356
2622
7.491372
GCAGATTTAAGCCACGCTATATATGTA
59.509
37.037
0.00
0.00
38.25
2.29
2374
2640
5.852282
ATGTAAGTTATGGTCCCAAATGC
57.148
39.130
0.00
0.00
0.00
3.56
2375
2641
4.667573
TGTAAGTTATGGTCCCAAATGCA
58.332
39.130
0.00
0.00
0.00
3.96
2376
2642
4.704540
TGTAAGTTATGGTCCCAAATGCAG
59.295
41.667
0.00
0.00
0.00
4.41
2446
2719
8.737175
GCTTGACATGTCCATATGAATGATATT
58.263
33.333
22.85
0.00
34.84
1.28
2579
3009
7.838079
TTCAGGTACACCTAGTTAACACTTA
57.162
36.000
8.61
0.00
46.65
2.24
2614
3044
5.945784
ACAACTACACAAATCTGCCATGTAT
59.054
36.000
0.00
0.00
0.00
2.29
2615
3045
7.109501
ACAACTACACAAATCTGCCATGTATA
58.890
34.615
0.00
0.00
0.00
1.47
2633
3063
9.973450
CCATGTATAGTTATACTATGATGCTCC
57.027
37.037
9.10
0.00
41.23
4.70
2636
3066
8.119891
TGTATAGTTATACTATGATGCTCCCCA
58.880
37.037
9.10
0.00
41.23
4.96
2653
3083
0.749091
CCATCGCTGGAATCTGCCAA
60.749
55.000
0.00
0.00
46.37
4.52
2661
3091
3.012518
CTGGAATCTGCCAACCTAGTTG
58.987
50.000
0.40
0.40
42.49
3.16
2692
3122
5.989477
ACGATTTGAATCTTATGTGAGGGA
58.011
37.500
0.00
0.00
33.24
4.20
2693
3123
6.414732
ACGATTTGAATCTTATGTGAGGGAA
58.585
36.000
0.00
0.00
33.24
3.97
2718
3148
2.093235
ACAATGCTCTCCTGAAGCTACC
60.093
50.000
0.00
0.00
0.00
3.18
2868
3427
7.982252
TCCTTCTTAATTGATAGATGAGGCAT
58.018
34.615
0.00
0.00
0.00
4.40
2905
3464
2.549926
CCTCATGCGCTACATTACACA
58.450
47.619
9.73
0.00
36.64
3.72
2924
3483
0.253894
ATCAGTATGCTGCACCTGCA
59.746
50.000
20.46
1.19
42.76
4.41
2939
3499
2.149578
CCTGCATATGGCTGCTTAGTC
58.850
52.381
4.56
0.00
45.15
2.59
2975
3535
1.569479
GCTTGTGTTCGCCAGAGTCC
61.569
60.000
0.00
0.00
0.00
3.85
3095
3657
3.041940
GTTCACGCACTCACGGGG
61.042
66.667
0.00
0.00
36.98
5.73
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
40
41
9.915629
TGAACACAAACTTAAGTTTTGTAACAT
57.084
25.926
28.84
20.93
45.07
2.71
99
100
5.103687
TCCCTTATATGCCAAGATCTCCAT
58.896
41.667
0.00
2.30
0.00
3.41
255
256
1.153469
GCTAGGAGCTGGCACTGAC
60.153
63.158
0.00
0.00
37.89
3.51
330
331
3.055819
AGTGTATGAAGGACGCATCAACT
60.056
43.478
0.00
0.00
0.00
3.16
350
351
4.074970
CACAGCAGATAAAACCAAGGAGT
58.925
43.478
0.00
0.00
0.00
3.85
359
360
3.138884
TGGCACTCACAGCAGATAAAA
57.861
42.857
0.00
0.00
0.00
1.52
373
374
2.260822
ACTGTCTCTACCAATGGCACT
58.739
47.619
0.00
0.00
0.00
4.40
416
417
2.154567
ACCCTGAATACGACAGCCTA
57.845
50.000
0.00
0.00
34.47
3.93
461
462
0.395862
TCCAAAGGACAACGCCCAAA
60.396
50.000
0.00
0.00
0.00
3.28
537
539
1.183549
GATACTGGAGACACCACGGT
58.816
55.000
0.00
0.00
44.64
4.83
577
579
0.625316
ATAGCTTGCCCACCACATGA
59.375
50.000
0.00
0.00
0.00
3.07
580
582
0.035152
CTCATAGCTTGCCCACCACA
60.035
55.000
0.00
0.00
0.00
4.17
619
621
6.091441
GGTCATAGTACAAGACTCAAAAGCTG
59.909
42.308
10.75
0.00
39.81
4.24
622
624
7.962964
TTGGTCATAGTACAAGACTCAAAAG
57.037
36.000
10.75
0.00
39.81
2.27
639
641
3.638160
ACATTGCACTCAGTTTTGGTCAT
59.362
39.130
0.00
0.00
0.00
3.06
710
718
5.877012
ACTATGTGGCACATCAACTAAGAAG
59.123
40.000
34.48
23.89
44.52
2.85
832
840
5.061684
GTGGTTCTTTCGGTTTTCTGTTTTG
59.938
40.000
0.00
0.00
0.00
2.44
833
841
5.165676
GTGGTTCTTTCGGTTTTCTGTTTT
58.834
37.500
0.00
0.00
0.00
2.43
873
881
1.149148
GAAGTGGCAACGAGGAGAAC
58.851
55.000
0.00
0.00
42.51
3.01
874
882
0.319555
CGAAGTGGCAACGAGGAGAA
60.320
55.000
0.00
0.00
42.51
2.87
875
883
1.289066
CGAAGTGGCAACGAGGAGA
59.711
57.895
0.00
0.00
42.51
3.71
876
884
1.738099
CCGAAGTGGCAACGAGGAG
60.738
63.158
10.61
0.00
42.51
3.69
877
885
2.342279
CCGAAGTGGCAACGAGGA
59.658
61.111
10.61
0.00
42.51
3.71
911
919
0.190069
AGGCCGTGGTATGGGATAGA
59.810
55.000
0.00
0.00
0.00
1.98
913
921
1.125093
CCAGGCCGTGGTATGGGATA
61.125
60.000
11.85
0.00
42.17
2.59
932
940
0.175989
CTAGAGAAACCTCGGGCCAC
59.824
60.000
4.39
0.00
35.86
5.01
954
962
2.484264
GCCTGCCGAGCGAATTTATTAT
59.516
45.455
0.00
0.00
0.00
1.28
955
963
1.871039
GCCTGCCGAGCGAATTTATTA
59.129
47.619
0.00
0.00
0.00
0.98
956
964
0.663153
GCCTGCCGAGCGAATTTATT
59.337
50.000
0.00
0.00
0.00
1.40
1020
1028
2.595095
CAAATCCTAGGGGCGGCA
59.405
61.111
12.47
0.00
0.00
5.69
1053
1077
0.034756
CAACTCACCATGGTGGACGA
59.965
55.000
38.12
21.85
45.43
4.20
1407
1450
3.248841
TGTGTTTTGTCGTGCGTAATGAT
59.751
39.130
0.00
0.00
0.00
2.45
1410
1453
3.889196
ATGTGTTTTGTCGTGCGTAAT
57.111
38.095
0.00
0.00
0.00
1.89
1419
1469
5.176958
ACTTACTGCTCGTATGTGTTTTGTC
59.823
40.000
5.08
0.00
35.76
3.18
1420
1470
5.054477
ACTTACTGCTCGTATGTGTTTTGT
58.946
37.500
5.08
0.00
35.76
2.83
1446
1496
7.086376
GCATCACAATGATTACCATTCCATAC
58.914
38.462
0.00
0.00
43.27
2.39
1448
1498
5.599242
TGCATCACAATGATTACCATTCCAT
59.401
36.000
0.00
0.00
43.27
3.41
1456
1506
8.020861
ACAATTGTTTGCATCACAATGATTAC
57.979
30.769
20.09
0.00
42.80
1.89
1484
1546
2.507339
ATGGGTTTGTCGCAAAACAG
57.493
45.000
17.83
0.00
41.00
3.16
1486
1548
2.034812
TGGTATGGGTTTGTCGCAAAAC
59.965
45.455
10.63
10.63
42.08
2.43
1493
1555
7.277760
GCTGATAAAATTTGGTATGGGTTTGTC
59.722
37.037
0.00
0.00
0.00
3.18
1507
1569
7.360607
GCAACATGCTTCTTGCTGATAAAATTT
60.361
33.333
10.59
0.00
40.96
1.82
1512
1574
3.506844
TGCAACATGCTTCTTGCTGATAA
59.493
39.130
16.78
0.00
45.31
1.75
1547
1720
1.908299
TTGAGAGAGTGGCCAGCGA
60.908
57.895
5.11
0.00
0.00
4.93
1565
1738
3.905454
TGGTGAGATGGCCACTGT
58.095
55.556
8.16
0.00
35.05
3.55
1607
1805
3.428746
AACTGATCTGCGCAGTACTAG
57.571
47.619
34.70
27.30
45.27
2.57
1617
1815
4.392138
GGTACCAAGTGTTAACTGATCTGC
59.608
45.833
7.15
0.00
36.51
4.26
1638
1836
7.226523
GGAAATGCAAATTAGAACAAACAAGGT
59.773
33.333
0.00
0.00
0.00
3.50
1669
1885
3.683989
CATTATGCGGTCACAACATCAC
58.316
45.455
0.00
0.00
0.00
3.06
1698
1914
6.256757
GCAGATATTATGAGATTAACGAGGCC
59.743
42.308
0.00
0.00
0.00
5.19
1748
1983
6.761714
CCTACTAAACACGATTTAAGAGGCAT
59.238
38.462
0.00
0.00
0.00
4.40
1749
1984
6.103997
CCTACTAAACACGATTTAAGAGGCA
58.896
40.000
0.00
0.00
0.00
4.75
1750
1985
6.104665
ACCTACTAAACACGATTTAAGAGGC
58.895
40.000
15.73
0.00
0.00
4.70
1751
1986
6.755607
GGACCTACTAAACACGATTTAAGAGG
59.244
42.308
14.95
14.95
0.00
3.69
1752
1987
7.545489
AGGACCTACTAAACACGATTTAAGAG
58.455
38.462
0.00
0.00
0.00
2.85
1756
2002
6.435277
ACTGAGGACCTACTAAACACGATTTA
59.565
38.462
0.00
0.00
0.00
1.40
1761
2007
4.516365
AACTGAGGACCTACTAAACACG
57.484
45.455
0.00
0.00
0.00
4.49
1822
2070
1.594862
GCACGGCACAAGAGATACATC
59.405
52.381
0.00
0.00
0.00
3.06
1845
2093
1.968540
GAGCAACAGTGGGTCAGGC
60.969
63.158
1.92
0.00
33.16
4.85
1884
2136
8.236586
TCATCACATTTAGCAAGTATGAACAAC
58.763
33.333
0.00
0.00
0.00
3.32
1892
2145
8.390354
CGAAAAGATCATCACATTTAGCAAGTA
58.610
33.333
0.00
0.00
0.00
2.24
1897
2150
5.680229
CAGCGAAAAGATCATCACATTTAGC
59.320
40.000
0.00
7.26
33.59
3.09
1902
2155
3.011818
TGCAGCGAAAAGATCATCACAT
58.988
40.909
0.00
0.00
0.00
3.21
2012
2265
5.571778
GTAAACTCGTTTACTGGACACAG
57.428
43.478
19.96
0.00
46.81
3.66
2058
2311
0.446222
CGCAGGTCCCAAACATTACG
59.554
55.000
0.00
0.00
0.00
3.18
2076
2329
6.537566
CAAGTGAAATAACACAGAATCCTCG
58.462
40.000
0.00
0.00
42.45
4.63
2276
2539
4.767409
AGTAAAAGAACTTGCTTGGATCCC
59.233
41.667
9.90
0.00
0.00
3.85
2356
2622
2.497273
GCTGCATTTGGGACCATAACTT
59.503
45.455
0.00
0.00
0.00
2.66
2374
2640
8.797438
TCTGTAACTATTATACTGGATCTGCTG
58.203
37.037
0.00
0.00
0.00
4.41
2375
2641
8.941995
TCTGTAACTATTATACTGGATCTGCT
57.058
34.615
0.00
0.00
0.00
4.24
2376
2642
9.015367
TCTCTGTAACTATTATACTGGATCTGC
57.985
37.037
0.00
0.00
0.00
4.26
2411
2684
3.446873
TGGACATGTCAAGCAACAAAACT
59.553
39.130
26.47
0.00
31.81
2.66
2446
2719
4.107127
ACATTGCCTACCCACAAACTAA
57.893
40.909
0.00
0.00
0.00
2.24
2447
2720
3.799432
ACATTGCCTACCCACAAACTA
57.201
42.857
0.00
0.00
0.00
2.24
2532
2904
4.942761
ATACCAATAGCAATGCCTTTGG
57.057
40.909
25.73
25.73
42.76
3.28
2588
3018
5.068987
ACATGGCAGATTTGTGTAGTTGTTT
59.931
36.000
0.00
0.00
0.00
2.83
2614
3044
6.321435
CGATGGGGAGCATCATAGTATAACTA
59.679
42.308
0.00
0.00
36.25
2.24
2615
3045
5.127845
CGATGGGGAGCATCATAGTATAACT
59.872
44.000
0.00
0.00
36.25
2.24
2633
3063
1.895707
GGCAGATTCCAGCGATGGG
60.896
63.158
21.53
3.94
0.00
4.00
2636
3066
0.749454
GGTTGGCAGATTCCAGCGAT
60.749
55.000
0.00
0.00
38.10
4.58
2653
3083
1.080974
CGTCGCCGAACAACTAGGT
60.081
57.895
0.00
0.00
35.63
3.08
2675
3105
6.720309
TGTTCATTCCCTCACATAAGATTCA
58.280
36.000
0.00
0.00
0.00
2.57
2678
3108
6.040166
GCATTGTTCATTCCCTCACATAAGAT
59.960
38.462
0.00
0.00
0.00
2.40
2692
3122
3.442977
GCTTCAGGAGAGCATTGTTCATT
59.557
43.478
3.25
0.00
0.00
2.57
2693
3123
3.015327
GCTTCAGGAGAGCATTGTTCAT
58.985
45.455
3.25
0.00
0.00
2.57
2718
3148
1.691196
CTCAGGACTAGGAGGCTCTG
58.309
60.000
15.23
7.72
0.00
3.35
2868
3427
2.225242
TGAGGGGCTAAGGCAAATTTGA
60.225
45.455
22.31
0.00
40.87
2.69
2924
3483
5.144100
AGTACTCAGACTAAGCAGCCATAT
58.856
41.667
0.00
0.00
0.00
1.78
2925
3484
4.537751
AGTACTCAGACTAAGCAGCCATA
58.462
43.478
0.00
0.00
0.00
2.74
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.