>input_sequence_59897
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-----------------------------------------------CTCTGCCCCTTCCCCGCCGCTGCCG--------
--------CCCCTAGGATTTGCGCAGCCGACCTCCGTCGTCCACCATGGTGAGTTGAGCCCCTCTCCGACGATTTGTAT-
GTCTCTCTTTCTTCCGTGGCGCATGG-TGATGTGGTAACGAGCGAGCGAACGAATTCTTGGGG-TGCAGCCGAAGCAGAT
CCACGAGATCAAGGACTTCCTGCTGACGGCGCGGCGGAAGGACGCGCGGTCGGTGCGGATCAAGAGGACCAAGGACGCCG
TCAAGTTCAAGGTGCGCTGCTCCAGGTACCTCTACACCCTCTGCGTCCACGACACCGACAAGGCCAACAAGCTCAAGCAG
TCCCTCCCCCCAGGTCCGCTCC----------------ACCCTCTTTGTCCCTCCCTCCGGTTTGTTCCATGATTAAGTG
TTCTGATGAATCATTAC-------GCACGACAAAACACATACGAGCAGTAAGTAAGTATGGAATGGTAATCATT------
--GTGATGCAAACAATTGT-T---TCTGTTTTGCGACAAACCCATACCAAATTTTATCAGCAAGAAGCAT----------
---GTTGCACATATCACTG-------------------------------------------------------------
-------------------------------------CTTCGCTGGCCACTCTCTCAACAGTGGCCATCTCACCACCAGT
TACCTGTTCCTTG------------GT-------------ACTACTAGTACTGCGCAGATCAGTTAACACTTGGTA----
----------CCTTGTTTGTTCTAA----TTTGCATTTCCAGCGGTGATGTTGTGACCGCATAATGCAAACATGGCCTCG
TTAATCTCATA-ATATCTGCCATT---------------TATTCAGTTTTGTGCATG---ACATGCCT-----------C
TTAAATCGTGTT--TAGTAGGTCCTCAGTTTACTCACTCATGTTTTTGCATCTTATATAGTCATTATGAGATGTATCTCT
TGTGCCGTGCTTGCCTGACCCA----CTGTTGCTCAAATCCCACAGCCAGCCATTGTT-GTTCATACTTGCTAAATGTGA
TGATCTTTTCGCTGCAGGTTTGAACGTCCAGGAGGTTTAAGAAGCATCAAGCCAGATCATGCCTTTACTCTAGTAGCGGG
AATGTTGGATTTAGCAGCGTCTGTCTGTGTCCAGTAAACGAGTTTACCATGAGTATGTTCTAGACTGAAACGTAATGTTT
GGGACCTGCGAGGATTCTGTGTTATTTCACTTGCTGGAGAATGGAGATATGTTACTCCCTT-------------------
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>chr3B_1_TraesCS3B01G456100
ACTGGATGAAAAAACTATTATGGCCTTTTCCCCCGACTGGATGTTACAAAACTTAAGTTTGTGTTCAGGAGATATGAGAG
AAAAATTCCTACTAGTTCTATGGAGATCTTGGCATATAAGGGATGACGCCATTCACAGCAAAGGAGAAGCTTCTATCAGA
GATTCGGTGTTGTTCCTAAAGTCCTACTGGGAGTGCTTGAACTCTGAAATCCCTGTTGTAAATGATAGTAAAGGTAAACA
GAAATTGCATGAAGTGTCAGTGCCAGCTCCTAGCATCCCTCGACCTGACATTGGCTGGACAAAACCTCCTGAGAAGTACA
TTAAAATCAAAGTTGATGCGTCCTTCATACACTCCTTGGTTTTATCTGCTGTGAGTGCCATTGGTAGAGACAGTTTGGGT
GTTGTGTTATTCTCGGTAGGCTGTCGTATTCAGGGTTGCACGGATGCGGAGGAATCTGAAGTTTGGGCGTTGTCCTTTGG
ACTAAGACAAGCTAGCAATTTGTCACTAAACTGT-TTCTGGTGGAATCTGACTGCACTACCGTGGTGTCTCCAGTATCTG
ACTGCAACATTAGCAGAATCATGTGGTGGGCAAGCTATGAGGAGTCAAAGAGGTTGATGACAGCTTTTGAGTCTTGTACT
ATGACCAAAACT------GAGTGCAATGTGGCCGCACATGAGTTAGCTACGTATGCTAGAATCCATGGTGATTTCCTCTT
CTTAGTTGATGTGCCACATAGTGTGAAACATGTAATCATGTCCGACTGTATTCCTGGATAAATGCAATGCAAGGCTCCCT
TTATCCTCAAAAAAGAAAAGAAAAAGAAAAGTAAAAAAACAAAACAGAAAACCGAAAGAACCACACTGCTGCATTGCCGC
GTTCTCCTCGTTGCCACTTCGGCCCGGCGTGGGTCTGGTCTATCCCATACCACGGCCTGGTGGCCCGAGGTTTCTCTAGG
TATAATAAATTCGCTCGGCAGGCATCAGCCGTGTCTTCTCCTCCCCCCTCTGCCCCTTCCCCGCCGCTGCCG--------
--------CCCCTAGGATTTGCGCAGCCGACCTCCGTCGTCCACCATGGTGAGTTGAGCCCCTCTCCGACGATTTGTAT-
GTCTCTCTTTCTTCCGTGGCGCATGG-TGATGTGGTAACGAGCGAGCGAACGAATTCTTGGGG-TGCAGCCGAAGCAGAT
CCACGAGATCAAGGACTTCCTGCTGACGGCGCGGCGGAAGGACGCGCGGTCGGTGCGGATCAAGAGGACCAAGGACGCCG
TCAAGTTCAAGGTGCGCTGCTCCAGGTACCTCTACACCCTCTGCGTCCACGACACCGACAAGGCCAACAAGCTCAAGCAG
TCCCTCCCCCCAGGTCCGCTCC----------------ACCCTCTTTGTCCCTCCCTCCGGTTTGTTCCATGATTAAGTG
TTCTGATGAATCATTAC-------GCACGACAAAACACATACGAGCAGTAAGTAAGTATGGAATGGTAATCATT------
--GTGATGCAAACAATTGT-T---TCTGTTTTGCGACAAACCCATACCAAATTTTATCAGCAAGAAGCAT----------
---GTTGCACATATCACTG-------------------------------------------------------------
-------------------------------------CTTCGCTGGCCACTCTCTCAACAGTGGCCATCTCACCACCAGT
TACCTGTTCCTTG------------GT-------------ACTACTAGTACTGCGCAGATCAGTTAACACTTGGTA----
----------CCTTGTTTGTTCTAA----TTTGCATTTCCAGCGGTGATGTTGTGACCGCATAATGCAAACATGGCCTCG
TTAATCTCATA-ATATCTGCCATT---------------TATTCAGTTTTGTGCATG---ACATGCCT-----------C
TTAAATCGTGTT--TAGTAGGTCCTCAGTTTACTCACTCATGTTTTTGCATCTTATATAGTCATTATGAGATGTATCTCT
TGTGCCGTGCTTGCCTGACCCA----CTGTTGCTCAAATCCCACAGCCAGCCATTGTT-GTTCATACTTGCTAAATGTGA
TGATCTTTTCGCTGCAGGTTTGAACGTCCAGGAGGTTTAAGAAGCATCAAGCCAGATCATGCCTTTACTCTAGTAGCGGG
AATGTTGGATTTAGCAGCGTCTGTCTGTGTCCAGTAAACGAGTTTACCATGAGTATGTTCTAGACTGAAACGTAATGTTT
GGGACCTGCGAGGATTCTGTGTTATTTCACTTGCTGGAGAATGGAGATATGTTACTCCCTTAT---ATCATACGTATATA
AATT-----GATTGCACACTATTTTTCCTCCTGGATTGTTTTGCATTTCCTTGAAGCCATTCATTGTTTGTTCTGAGATG
CCATATGTC--TGGTTTTTGTGGTTGTGATGGTGAAACCAGTTGTTTTTCTGGGTTGGGGGATCCAAGCAAGTTC--TTT
TACTTGTGTTATTGGCATTTTGTGTTGTTCTTCTGCA-GATTTAAGCCACGCTATATATGTAAGTTATGGTCCCAAATGC
AG-------CAGATCCAGTATAATAGTTACAGAGAAAGATACTAGTTTTGTTGCTTGACATGTCCATATGAATGATATTT
AGTTTGTGGGTAGGCAATGTAGATAATTGTGATCACGAAGGGTTGCTA--------------------------------
-------------------------------------------------------------------TTTTACCCGTATA
TACTGTTGTGCACTATTGCTCCGCC-------------------------------------------------------
---AAAGGCATTGCTATTGGTATATTCAGGTACACCTAGTTAACACTTATATATGTTAAACAACTACACAAATCTGCCAT
GTATAGTTATACTATGATGCTCCCCATCGCTGGAATCTGCCAACCTAGTTGTTCGGCGACGATTTGAATCTTATGTGAGG
GAATGAACAATGCTCTCCTGAAGCTACCAGAGCCTCCTAGTCC-------------------------------------
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------------TGAGGCGGCAATATGGGTTACCGCCGGTGCCAAGAAATTAGGAACAATCATGTCGGGAGAGTTATGGA
CCTTGTGTAATGTCGGTGTGTTCTACAACAAAATACTCTATTCCTTCTTAATTGATAGATGAGGCATCAAATTTGCCTTA
GCCCCTCATGCGCTACATTACACATCAGTATGCTGCACCTGCATATGGCTGCTTA-GTCTGAGTACTTCGCTACTGCTTG
TGTTCGCCAGAGTCC--TTTTTTTTTTGAGTTGTTCAGGTTCATGTACTCAACAAAAGAGCAAGGAACAAATGTCTCAGT
TTTTCTTTTCTTTTTGCCGCGTGTTAGGTTCAGATCCAGGTTCACGCACTCACGGGGCACACAAGTCATTCATGAAAAAA
AAATGGATAC
>chr6B_4
---GGATGAAAAATCTATTATGGCCTTTTCCCCTGACTGGCTGTTACAAAACTTAAGTTTGTGTTCAGGAGATATGAGAG
AAAAATTCCTACTAGTTCTGTGGAGATCTTGGCATATAAGGGATGACGCCATTCACAGCAAAGGAGAAGCTTCTATCAGA
GATTCGGTGTTGTTCCTAAAGTCCTACTGGGAGTGCTTGAACTCTGACATCCCTGCTGTAAATGATAGAAAAGGTAAACA
GAAATTGCATGATGTTTCAGTGCCAGCTCCTAGCATCCCTCGACCTGACATTGGCTGGGCAAAACCTCCTGAGAAGTACA
TTAAAATCAACGTTGATGCGTCCTTCATACCCTCCTTGGGTTTATCTGCTGTGGGTGCCATTGGTAGAGACAGTTTGGGT
ATTGTGATATTCTCGGCAGGCTGTCATATTCAGGGTTGCACGGATGCGGAGGAAGCTGAAGCTTGGGCGCTGTCCTTTGG
ACTAAGACAAGCTAGCAATCTGTCACTAAACTGTACTCTGGTGGAATCTGACTGCACTGCCGTGGTGTCTGCAGTAACCG
ACTGCAACAGTAGCAGAACCAGATGGTGGGCAAGCTATGAGGAGTCAAAGAGGTTGATGAGAGGTTTTGAGTCTTGTACT
GTGACCAAAACTTATAGGGAGTGCAATGTGGCCGCACATG-----GCTACGTATGCTAGAATCCATGGTGATTTCCTTTT
CTTAGCTGATGTGCCACATAGTGTGAAACATGTAATCATGTCCGATTGTATTCCTGGATAAATGCAGTGCAAGGCTCCCT
TTATCCTCAAAAAA------------------------------------------------------------------
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>chr2D_4
---GGATGAAAAATCTCTTATGGCCTTTTCCCCCGAGTGGCTGTTACAAAACTTAAGTTTGTGCTCGGGAGATATGACAG
AAAAATTTCTACTAGTTCTGTGGAGATCTTGGCATATAAGGGATGACGCCATTCACAGTAAAGGAGAAGCTTCTATCAGA
GATTCGATGTTGTTCCTAAAGTCCTACTGGGAGTGCTTGAACTCTAAAATCCCTGCTGTAAATGATAGTAAAGGTAAACA
GAAACTGCATGAAGTTTCAGTGCCAGCTCCTAGTATCCCTCAAACTGACACTGGCTGGACAAAACCTCCTGAGAAGTACA
TTAAAATCAACGTTGATGCGTCCTTCATACCGTCCTTGGGTTTAACTGATGTGGGTGCCATTGGTAGAGACAGTTTGGGT
GCTGTGTTATTCTCGGCAGGCTGTCGTTTTCAGGGTTGCACGGATGCGGAGGAATCTAAAACTTGGGCGCTGTCCTTTGG
ACTAAGACAAGCTAGCAATTTGTCACTAAACCGTATTCTGGTGGAATCTGACTGCACTGCCGTGGTGTCTGCAATATCCG
ACTGCAACATTACCAGAACCAGGTGGTGGGCAAGCTATGAGGAGTCAAAGAGATTGATGAGAGGTTTTGAGTCTTGTAAT
GTGACCAAAACTTATAGGGAGTGCAATGTGGCCGCACATGAGTTAGCTACGTACGCTAGAATCCATGGTGATTTCCTTTT
CTTAGCTGATGTGCCACATAGTGTGAAACATGTAATCATGTCCGACTGTATTCCTGGATAAATGTAATGCAAGGCTCCCT
TTATCCTAATAAAAA-----------------------------------------------------------------
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>chr5A_5
----GATGAAAAATCTCTCATGGCCTTTTCCCCCGAGTGGCTGTTACAAAGCTTAAGTTTCTGTTCAGGCGATATGAGAG
AAAAATTCCTACTTGTTCTGTGGAGATCTTGGCATATGAGGGATGATGCCATTCACAGTAAAGGAGAAGCTTCTATCAGA
GATTCGGTGTTGTTTCTAAAATCCTACTGGGAGTGCTTGAACTCTGAAATCCCTGCTGTAAATGATAGTAAAGGTAAACA
GAAACTGCATGAAATTTCAGTGCCAGCTCCTAGTATCCCTCGACCTGACACTGGTTGGACAAAACCTCCTGAGAAGTACA
TTAAAATCAACATTGATGCGTCCTTCATACCCTCCTTGGGTTTAACTGTTGTGGGTGCCATTGGTAGAGACAGTTTGGGT
GCTGTTTTATTCTCGGCAGGCTGTCGTTTTCAGGGTTGCATGGATGCGGAGGAATCTGAAGCTTGGGCACTGTCCTTTGG
ACTAAGACAAGCTAGCAATTTGTCATTAAACCATATTCTGGTGGAATCTGACTGCTCTGCCGTGGTGTCTGCAGTTTCCG
ACGGCAACATTGGCAGAACCAGGTGGTGGGCAAGCTATGAGGAGTCAAAGAGATTGATGAGAGGTTTTGAGTCTTGTAAT
GTGACCAAAACTTATAGGGAGTGCAATGTGGCCGCACATGAGTTAGCTACGTATGCTAGAATCCAGGGTGATTTCCTTTT
CTCAGCTGATGTGCCACATAGTGTGAAACATGTAATCATGTCCGACTGTATACCTGGATAAATGAAATGCAAGGCTCCCT
TTATCCTCAAAAAAAAA---------------------------------------------------------------
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>chr7A_5
----GATGAAAAATCTCTCATGGCCTTTTCCCCCGAGTGGCTGTTACAAAGCTTAAGTTTGTGTTCAGGAGATATGAGAG
AAAAATTCCTACTTGTTCTGTGGAGATCTTGGCATTTGAGGGATGATGCCATTCACAGTAAAGGAGAAGCTTCTATCAGA
GATTCGGTGTTGTTTCTAAAATCCTACTGGGAGTGCTTGAACTCTGAAATCCCTGCTGTAAATGATAGTAAAGGTAAACA
GAAACTGCATGAAATTTCAGTGCCAGCTCCTAGTATCCCTCGACCTGACACTGGCTGGACAAAACCTCCTGAGAAGTACA
TTAAAATCAACGTTGATGCGTCCTTCATACCCTCCTTGGGTTTAACTGATGTGGGTGCCATTGGTAGAGACAGTTTGGGT
GCTGTTTTATTCTCGGCAGGCTGTCGTTTTCAGGGTTGCACGGATGCGGAGGAATCGGAAGCTTGGGCACTGTCCTTTGG
ACTAAGACAAGCTAGCAATTTGTCAGTAAACCATATTCTGGTGGAATTTGACTGCTCTGCCGTGGTGTCTGCAGTTTCCG
ACGGCAACATTAGCAGAACCAGGTGGTGGGCAAGCTATGAGGAGTCAAAGAGATTAATGAGAGGTTTTGAGTCTTGTAAT
GTGACCAAAACTTATAAGGAGTGCAATGTGGCCGCACATGATTTAACTACGTATGCTAGAATCCAGGGTGATTTCCTTTT
CTTAGCTGATGTGCCACATAGTGTGAAACATGTAATCATGTCCGACTGTATACCTGGATAAATGAAATGCAAGGCTCCCT
TTATCCTCAAA---------------------------------------------------------------------
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>chr3A_5
----GATGAAAAATCTCTCATGGCCTTTTCCCCCGAGTGGCTATTACAAAGCTTAAGTTTGTGTTCAGGAGATATGAGAG
AAAAATTCCTACTTGTTTTGTGGAGATCTTGGCATTTGAGGGATGATGCCATTCACAGTAAAGGAGAAGCTTCTATCAGA
GATTCGGTGTTGTTTTTAAAATCCTACTGGGAGTGCTTGAACTCTGAAATCCCTGTTGTAAATGATAGTAAAGGTAAATA
GAAACTGCATGAAATTTCAGTGCCAGCTCCTAGTATCCCTCGACCTGACACTGGCTGGACAAAACCTCCTGAGAAGTACA
TTAAAATCAACATTGATGCGTCCTTCATACCCTCCTTGGGTTTAACTGCTGTGGGTGCCATTGGTAGAGACAGTTTGGGT
GCTGTTTTATTCTCGGCAGGCTGTCGTTCTCAGGGTTGCACAGATGCGGAGGAATCTGAATCTTGGGCACTATCCTTTGG
ACTAAGACAAGCTAGCAATTTGTCACTAAACCATATTCTGGTGGAATCTGACTGCTCTGCCGTGGTGTCTACAGTTTCCG
ACGGCAACATTAGCAGAACCAGGTGGTGGGCAAGCTATGAGGAGTCAAAGAGATTGATGAGAGGTTTTGAGTCTTGTAAT
GTGACCAAAACTTATAGGGAGTGCAATGTGGCCGCACATGAGTTAGCTACGTATGCTAGAATCCAAGGTGATTTTCTTTT
CTTAGCTGATGTGCCACATAGTGTGAAACATGTAATCATGTCCGACTGTATACCTGGATAAATGAAATGCAAGGCTCCCT
TTATCCTCAAAAAAAAA---------------------------------------------------------------
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>chr1A_246
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-----TGCATGAAATTTCAGTGCCAGCTCCTAGTATCCCTCGACCTGACACTGGCTGGACAAAACCTCCTGAGAAGTACA
TTAAAATCAACGTTGATGCGTCCTTCATACCCTCCTTGGGTTTAACTGCTGTGGGTGCCATTGGTAGAGACAGTTTGGGT
GATGTTTTATTCTCGGCAGGCTGTCGTTTTCAGGGTTGCACGGATGCGGAGGAATCTGAAGCTTGGGCACTGTCCTTTGG
ACTAAGACAAGCTAGCAATTTGTCACTAAACCATATTTTGGTGGAATCTGACTGCTCTGCCGTGGTGTCTGCAGTTTCCG
ACGGCAACATTAGCAGAACCAGGTGGTGGGCAAGCTATGAGGAGTCAAAGAGATTGATGAGAGGTTTTGAGTCTTGTAAT
GTGACCAAAACTTATAGAGAGTGCAATGTGGCCGCACATGAGTTAGCTACGTATGCTAGAATCCAAGGTGATTTCCTTTT
CTTAGCTGATGTGCCACATAGTGTGAAACATGTAATCATGTCCGACTGTATACCTGGATAAATGAAATGCAAGGCTCCCT
TTATCCTCAAAAAAAAAA--------------------------------------------------------------
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>chr4A_314
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-------------------------------------------------------------------------AAGTACA
TTAAAATCAACGTTGATGCGTCCTTCATACCCTCCTTGGGTTTAACTGCTGTGGGTGTCATTGGTAGAGACAGTTTGGGT
GTTGTTTTATTCTCGGCAGGCTATCGTTTTCAGGGTTGCACGGATGCGGAGGAATCTGAAGCTTGGGCACTATCCTTTGG
ACTAAGACAAGCTAGCAATTTGTCACTAAACCATATTCTGGTGGAATCTGACTGCTCTGCCGTGGTGTCTGCAGTTTCCG
ACGGCAACATTAGCAGAACCAGGTGGTGGGCAAGCTATGAGGAGTCAAAGAGATTGATGAGAGGTTTTGAGTCTTGTAAT
GTGACCAAAACTTATAGGGAGTGCAATGTGGCCGCACATGAGTTAGCTACGTATGCTAGAATCCAGGGTGATTTCCTTTT
CTTAGCTGATGTGCCACATAGTGTGAAACATGTAATCATGTCCGACTATATACCTGGATAAATGAAATGCAAGGCTCCCT
TTATCCTCAAAAAA------------------------------------------------------------------
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>chr3B_814
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--------------------AAAAAGAAAAGTAAAAAAA--AAACAGAAAACCGAAAGAACCACACTGCTGCATTCCCGC
TACA---------------TGGGCCGTCGCGGGTCTGGCCCAT-CCATACCACGGCCTGTTGGCCCGAGGTTTTTCTAGG
T---ATAAATTCGCTCGCCAGGCATCAGCCGTGTGTTCTCCTCCCCCCTCTGCTCCTTCCCC--CGCCGCCGCCGCCGC-
-------CCCCCTAGGATCTGCGCAGCCGACCTCCGCCGTCCACCATGGTGTGTTGAGCCCCTCTCCGACGATTTGTAT-
GTCTCTCTTTCTTCCGTGGCGCATGG-TGATGTGGTAACGAGCGA--------ATTCTTGGGG-TGCAGCCGAAGCAGAT
CCACGAGATCAAGGACTTCCTCCTGACGGCGCGGCGGAAGGACGCGCGGTCGGTGCGGATCAAGAGGACCAAGGACGCCG
TCAAGTTCAAGGTGCGCTGCTCCAGGTACCTCTACACCCTCTGCGTCCACGACACCGACAAGGCCAACAAGCTCAAGCAG
TCCCTCCCCCCAGGTCCGCTCCCTTCTCTCCCCCACCCTCCCACCCCCTCTGTCC---------CTTCCATGATCAAGTG
TTCTGATGAGTCGTTAC-------GCGCATCCAAACACGTACGAGCAGTAAGTAAATCTTGAATGATAATCATAGTGAAT
TAGTGATGCAAACAATTGTAT---TTTATTTTGCAACATACCCATGCCCAATTGCATCAGCTAGAAGCATGTTGGCAGGC
CTGGTTGCACGTATCGCTG-------------------------------------------------------------
-------------------------------------CTGCGCTGGCCACTCTCTCAGCAGTGGCCGTCTCACCACCAGT
TACCTGTTCATGCTACTACTTCGTAGC-------------------AGTACTGCACATATCAGTTAGCACTTGGTCAG--
--------ATCCTTGTTTGTTCTAA----TTTGCATTTCCAGCG-----------ACCGCATAGTGCAAACTTAGCCTCG
TTAATCTCATGTAT--CTGCAATGTATGTGGTCAGACACTATTCAGTTTTGTACATG---ACTGTATTGGGTCGGTGTGC
TCAAATTGTGTTAGTA-TAGGTCCTCAGTTTACGCATTCATTTCTT-GCATCTTATATAGTCATTATGACATGTATCTCT
TGTGCCGTGCTTCGCTGACCCA----CTGTTGCTCAAATCCCACAGCCAGGCATTTGTTGTTAACACATACTAACTGTGA
TCATCGCTTTGCTGCAGGTTTGAACGTCCAGGAGGTTTAAGAAGCATCAAGCCAGATCATGCCTTTACC--AGTAGTGCG
AATGTTGGATTTAGCAGCGTCTGT----GTTCAGTAAACGAGTTTATTCTGAGTATGTACTAGACTGAGATGTAATG-TT
GGGACCTGTGAGGATTTTGTGTTATTTCACTTGCTGAAGAATGGAGATATGTTACTCCCTTAT---ATCC----TATATA
AATTGATTGGATTGCACACCATTTTTCCTCCTTGTTTGTTTTGCATTTCTTTGAAGCCATGCATTGTTTGTTCTGAGATG
CCATATGTC--TGGTTTTGGTGGTTGTGATGGTGAAACCAGTTGTTTTTCTGGGTCGGAGGATCCAAGGAAGTTC--TTT
TACTTGTGTTATTAGCATTTTGTGTTGTTCTTCTGCAGGATTTAAGCCACGCTATATATGTTAGTTATGGTCCCAAATG-
---------CAGATCCAGTATAATTGTTACAGAGAAAGATACCGGTTTTGTTGCTTGACATGTCCATATGAATGATATA-
AGTTTGTGGGTAGGCAATGTAGATAATTGTGATCACGAAGGGTTGCTA--------------------------------
-------------------------------------------------------------------TTTTACCAGTATA
TACTGTTGTGCACTATTGCAGTTACCAAGGGACAACAACAAACTGGCTCAGTCCAGCAATGCAAATGATACTT--GCTCC
GCGAAAGGCATTGCTATTGGTATATTCAGGTACACCTAGTTAACACTTTTATATGTTGAACAACTACACAAATCTGCCAT
GTA--GTTATACTATGATGCTCGCCGTCGCTGGAATCTGCCATCCCAGTTATTCGCCGACGATTGGAGTCTTATGTGAGG
GTCTGAACAATGCTCTCCTGAAGCTACTAGAGCCTCCTAGTCCTGACTGAGTCCTGGTATAGTTCATACATTTGCTGAAA
ACATAGTATTCTGCTCTCCTGCTTGCACTGAATGGAACGAGCGTCTTTCGCCACAAGATTTCCCCTCCGATGGTTCTCCA
AAATATCAAAACTGAGGCGGCAATATGGGTTACCGCCGGTGCCAAGAAATTAGGAACAATCATGTCACGAGAGTTATGGA
CCTTGTGTAATGTCGGTGTGTTCTACAACAAAAAACTCTATTCCTTCTTAATTAGTAGATGAGGCAGCAAATTTGCCTCA
GTCCCTCATGCGCTACATTACACTTCAGTATGCTGCACCTGC--ATGGCTGCTTA-GTTTGAGTACTTCACTACTGCTTC
TGTTCGCCAGAGTCA--TTTTTTTTTTGAGTTGTTCAGGTTCATGTACTCAACGAAAGAGCAAGGAACAAATGTCTCAGT
TTTTCTTTTCTTTTTGCCGCATGTTAGGTTCAGATCCAGGTTCACGCACTCACGGGACACACAAGTCATTCATGAAAGAA
AA--------
>chr3A_867
TTGCGCGTTCTCCA------------------------------------------------------------------
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----------TTGCCACTTTGGGCCGGCCCGGGTCTGGCCCAT-CCATACCATGGCCTGATGGCCCGAGGTTTCTCTAGG
T---ATAAATTCGCTCGCCAGGCATCA-CCGTGTCTTCTTCTCCTCCCCCTGCTCTTTCCCCCCCGCCGCCGCCGCCTC-
-------CCCCCTAGGATCTGCGCAGCCGACCTCCGCCGTCCACCATGGTGAGCCCCTCTC--CTCCGACGATTTGCAT-
GTCTCACTTTCTTCCGTGGCGCATGG-CGATGTGCTAACTAGCGAACGT----ATTCTTGGGG-TGCAGCCGAAGCAGAT
CCACGAGATCAAGGACTTCCTGCTGACGGCGCGGCGGAAGGACGCGCGGTCGGTGCGGATCAAGAGGACCAAGGACGCCG
TCAAGTTCAAGGTCCGCTGCTCCAGGTACCTCTACACCCTCTGCGTCCACGACACCGACAAGGCCAACAAGCTCAAGCAG
TCCCTCCCCCCAGGTCCGCTCCCTTCTCTCCCCTACACACCCTCTTTTTT----CCTCGGATTTCTTCTATGATCAAGTG
CTCTCGATT---GTTAC-------GCACATCAAAGAACATACGAGCTGCAAGTAAATCTGGAATGTTAATCATT------
--GTGATACAAACAATTGT-TATTTTTATTTTGCAATAGACCATCATCCAACTGTATCAGCTAGAAGCATGCTGGCAGGC
CTGGTTGCTCATACATGGTGCTATCAGCATAGCAAAACACACCTACGAGCATAGTGACGCAAGAAATTGTTTTTATTTTG
CCACAGACCAATACCCAGTTGTATCAGTTGTAATTGTCTGTGCTGGCCACATGGCCAGCTTTGG---------CAACAGT
TACTTGTTCTCTGCAATGCCATGGCACTATTTAGTTGTAGACTTGTAGTCCTGCACAGATCAGTTAACATTTGGTCAGCT
CTAATGTTATCCTTGTTTGTTAGAA----TTTGCATTTCCAGCGATGTTGTC---ACCGCATAATGCAAACATAGCCTCG
TTAATCTCATATATATCTGCCATGTTTGTGGTTAAACACTATTCAGTTTTGTACCTG---ACTGTATTGGGTAGGTTTGC
TCAAATTGTGTT--TAGTAGG------------------------------CTTATATAGTCGTTATGACATGTATCTCT
TGTTCCATGCTTCCCTGACCTACTGTCTGTTGCTCAAATCCCACAGCCAGCCAGTTTT-GTTAACACTTACTAACTGTGA
TGATCTTTTCGCTGCAGGTTTGAACGTCCAGGAGGTTTAAGAATCATCAAGCCAGATCATGCCTTTACTCTTGTAGCCGG
AATGTTGGATTTAGCAGCGTCTGT----GTCCAGTAAACGAGTTTACCATGAGTATGTTCTAGACTGAAATGTAATCTTT
GGGACCTGTGAGGATTCTGTGTTATTTCACTTGCTGGAGAATGGAGATATGTTACTCCCTTATTATATCC----TATATA
AATT-----GATTGCACACTATTTTTCCTCCTGGATTGTTCTGCATTTCCTTGAAGCCATTAATTGTTTGTTCTGAGATG
CCATATGTC--TGGTTTTTGTGGTTGTGATGGTGAAACCAGTTGTTTTTCTGGGTTGGAGGATCCAAGGAAGTTTTTTTT
TACTTGTGTTATTGGCATTTTGTGTTGTTCTTCTGCAGGATTTAAGCCACGCTATATATGTTAGTTATGGTCCCAAATG-
---------CAGATCCAGTATAATAGTTACAGAAAAAGATACTGGTTTTGTTGCTTGACAAGTCCATATGAATGATATA-
AGTTTGTGGGTAGGCAATGTAGATAATTGTGTTCACGACTTGTACGGCTTCTGTTTTCATGTTGCGTGGGTATTTGGATT
TCAGGTATCTTATGTATGGATCAGTCATTTGGTCGATTGTTTTCAAGCTTGATTGTTGGTTAAGAATTTGTACCCGTATA
TACTGTTGTGCACGATTGCAGTTACCAAGGGACAACAACAAACTGGCCCTGTCCAGCAATGCAAATGATACTTTTGCTCC
GCGAAAGGCATTGCTATTGGTATATTCAGGTACACCTAGTTAACACTTTTATATGTTGAACAACTACACAAATCTGCCAT
GTA--GTTATACTATGATGCTCGCCGTCGCTAGAATCTGCCATCATAGTTATTCGGGGACGATTGGAGTCTTATGT----
-----------------------------GAGCCTCCTAGTCCTGACTGAGTCCTGGTATAGTTGATACATTTGCTGAAA
GCATAGTACTCTGCTCTCCTGCTTGCACTGAATGGAATGAGCGTCTTTTGCCACAAGATTT-----CCGATGGTTCTCCA
AAATATCAAAACTGAGGCGGCAATATGGGTTACCGCCGGTGCCAGGAAATTAGGAACAATCATGTCGGCAGAGTTATGGA
CCTTGTGTAATGTCGGTGTGTTCTACAACAAAAAACTCTATTCCTTCTTAATTAATAGACGAGGCAGCAAATCTGCCTTA
GCCCCTCATGCGCTACATTACACTTCAGTATGCTGCACCTGC--ATGGCTGCTTGTGTTTGAGTACTTCGCTACTGCTTG
TGTTTGCCAGAGTCAATTTTTTTTTTTGAGTTGTTCAGGTTCATGTACTCAACAAAAGAGCAAGGAACAAATGTCTCAGT
TTTTCTTTTCTTTTTGCCGCGTGTTAGGTTCAGATCCAGGTTCACGCACTCATGGGACACACAAGTCATTCATGAAAAAA
AAA-------
>chr3D_896
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----------------------CCCGGCCCGGGTTTGGCCCAT-CCATACCACGGCCTGATGGCCCGAGGTTTCTCTAGG
T---ATAAATTCGCTCGCCAGGCATCAGCCGTGCCTTCTCCTCCCCCCTCTGCTCCTTTCCC--CGCCGCCGCCGCCGCC
GCCGCCGCCCCCTAGGATTTGCGCAGCCGACCTCCGCCGTCCACCATGGTGAGTTGAGCCCCTCTCCTCCGACGATCTGC
GTGTCTCTTTCGTCCGTAGCTGCTGGATGATGTGGTAACGAACGAGCGAACGAAATCATTGTGATGCAGCCGAAGCAGAT
CCACGAGATCAAGGACTTCCTGCTGACGGCGCGGCGGAAGGACGCGCGGTCGGTGCGGATCAAGAGGACCAAGGACGCCG
TCAAGTTCAAGGTGCGCTGCTCCAGGTACCTCTACACCCTCTGCGTCCACGACACCGACAAGGCCAACAAGCTCAAGCAG
TCCCTCCCCCCAGGTCCCTTCCGT--TCTCCCCCACCCTCTTGTCCAGCTCTATC------TTTGTTCATTGATTAAGTG
TTCTGATGAGTTCTTACTAATTACGCACAGAAAATCACCCGCGAGC----AGTAAATCTTGAGCGATAATCATA------
--GTTATGCAAATAATTGT-T---TTTATTTTGCAACAAACCCATGCCCA-----ATCAGCTAGAAGCATGTTGGCAGGC
CTGGTTGCACACATCACTG-------------------------------------------------------------
-------------------------------------CTGCGCTGGCT-----------------------ACCACCAGT
TACCTGTTCCTTGTACTACTTCGTAGT-------------AGTAGTAGGACTGCACAGATCAGTTAACACTTGGTCAGGT
GT-ATGTTGTTCTTGTTTGTCCTAATTTGTTTGCATTTCCAGCG---ATGTTTTGACCGCATAATGCAAACATAGCCTTG
TTAATCTCGTATAT--CTGCAATGTGTGTGGTCAAACGCCATTCAGTTTTGTACATGACTACTGTATTGGGTAGGTATGC
TCAAATTGTGGTAGTACTACGTCCTCAGTTTACGCATTCATTTCTT-GCATCTTATATAGTCATTGTCACATGTATCTCT
TGTGCCGTTCTTCGCTGACCCA----CTGTTGCTCAAATCTTACAGCCAGCCATTTTTTGTTAACACTTACTAACTGCGC
TGATCTTTTCGCTGCAGGTTTGAATGTCCAGGAGGTTTAAGAAGCATCAAGCCAGATCATGCCTTTACC--AGTAGCGGG
AATGTTGGATTTAGCAACGTCTGT----GTTCAGTAAACGAGTTCGCCATGAGTATGTTCTAGACTGAAATGTAATGTTT
GGGACCTGTGAGGATTCTATGTTATTTCACTTGCTGGAGAATGGAGATATGTTACTCCCTTAT---ATCC----TATATA
AATTGATTGGATTGCACACTATTTTTCCTCCTTGTTTGTTTTGCATTTCCTTGAAGCCATTCATTGTTTGTTCTGAGATG
CCATTTGTCTATGGTTTTTGTGGTTGTGATGGTGAAACCAGTTGTTCTTCTG-GTTGGAGGATCCAAGGAAGTTG--TTT
TACTTATCTATGG---------------------------TTTAAGCCGTGCTATATATGTTAGTTTTGGTCCTAAATGT
TTTAATCTACAGGTCCAGTATAATAGTTAAGGAAAAATATACTTGTTTCGTTGCTTGACATACCCATATGAATGGTATA-
AGTTTGTGGATAGGCCATGTAGATAATTTTGATCAC--------------------------------------------
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>SNPs
SSS-------------------------------------S---------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S----------------------------------------------------------------
----------S-------------------S--------S-------------S--------------------------
----------------S--------------------------------------------S-------S----------
----------------------------------------------------------S-----------S-------S-
------------------S--S--------------------------------------S--S----------------
S----------------------------------------------------------------------------S--
-----S--------------------------------------------------------------------------
--------------S---SS-------------------SS----------------------------------S----
SSSSSSSSSS---------S---------S--------S-S--S---------------S--------------------
-SSS-------------S-----------------------------------S--------S----S------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S------S-S-------------------
---------S--S---------------SS-------------------------S-S-------S--------------
-------------------------S-S------S-------------S----S-------S------------------
--------------------------------------------------------------------------------
---------------------------------------S-----------------S--------S-------------
--------------------------------------------S---------S--------------------S----
--------------------------------------------S-------S--------------------S------
-----------------------S----------------------------S---------SSSSS-------------
-S----S--------------------------S--S----S-S--S----------------------S----------
------------S------------------------------------------S------S-S----S----S-----
--------------------------------------------------------------------------------
------------------------SSSS------------------------------------------S---------
--------S------------------------------------------------------------SSSSS------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------S-----------
-------------------------------------------------------------S-----------------S
SS-----------------------------------------S----------------------------------SS
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------SSSSS--------------------------------------------------------
------------------------------------------------S--------S----------------------
---SS-----------------S--S----------------S-------S-------------S--S------------
-SS------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S-------------------S------------S-------------
-----------------------S------------------SS--------------S---------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------S-----------------------
---SSSSSSS
>forward_551
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---------------------------------------------------CTGCACTACCGTGGTGTCTC---------
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>reverse_2311
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----------------------------------------------------------------------CGTAATGTTT
GGGACCTGCG----------------------------------------------------------------------
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>forward_1747
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-----------------------------------------------CACTCTCTCAACAGTGGCCA-------------
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>reverse_3066
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-------------------------ATCGCTGGAATCTGCCAACC-----------------------------------
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----------
