Multiple sequence alignment - TraesCS3B01G440900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G440900 chr3B 100.000 2669 0 0 1 2669 680424212 680426880 0.000000 4929.0
1 TraesCS3B01G440900 chr3A 92.430 2708 119 43 1 2669 652026738 652024078 0.000000 3786.0
2 TraesCS3B01G440900 chr3D 91.838 2720 130 50 1 2669 516879714 516877036 0.000000 3709.0
3 TraesCS3B01G440900 chr6D 95.122 41 1 1 2491 2530 132775281 132775241 0.000002 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G440900 chr3B 680424212 680426880 2668 False 4929 4929 100.000 1 2669 1 chr3B.!!$F1 2668
1 TraesCS3B01G440900 chr3A 652024078 652026738 2660 True 3786 3786 92.430 1 2669 1 chr3A.!!$R1 2668
2 TraesCS3B01G440900 chr3D 516877036 516879714 2678 True 3709 3709 91.838 1 2669 1 chr3D.!!$R1 2668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 418 0.465705 TTAGATCCGCTGCTGAAGGG 59.534 55.0 0.0 0.0 38.56 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2242 2322 0.103937 CCATTCTCTCGCCACTCTCC 59.896 60.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.683069 ACAAATGTTTCTGCTAAACTTGATAAG 57.317 29.630 16.62 0.00 0.00 1.73
65 67 1.739067 AACTTGATAAGCTGCCGGTC 58.261 50.000 1.90 0.00 0.00 4.79
76 78 1.836383 CTGCCGGTCTTGTCGTATAC 58.164 55.000 1.90 0.00 0.00 1.47
83 85 4.033684 CGGTCTTGTCGTATACAGTTAGC 58.966 47.826 3.32 0.00 39.87 3.09
86 88 5.505324 GGTCTTGTCGTATACAGTTAGCGAT 60.505 44.000 3.32 0.00 39.87 4.58
95 97 6.747739 CGTATACAGTTAGCGATAATGCTCAT 59.252 38.462 3.32 0.00 45.87 2.90
106 109 8.531622 AGCGATAATGCTCATGATATTATAGC 57.468 34.615 27.72 27.72 42.95 2.97
183 186 3.876914 TGACAGAGATGTGTGGTTTTGTC 59.123 43.478 0.00 0.00 35.48 3.18
198 201 8.076351 GTGGTTTTGTCACAATCCTTTCTGGA 62.076 42.308 11.83 0.00 40.79 3.86
284 287 7.544622 TCTGGTTTGCACATAGTAACTAGTAG 58.455 38.462 9.13 0.00 32.81 2.57
286 289 7.544622 TGGTTTGCACATAGTAACTAGTAGAG 58.455 38.462 3.59 0.00 0.00 2.43
287 290 7.177921 TGGTTTGCACATAGTAACTAGTAGAGT 59.822 37.037 3.59 0.00 41.56 3.24
288 291 8.680903 GGTTTGCACATAGTAACTAGTAGAGTA 58.319 37.037 3.59 0.00 37.44 2.59
415 418 0.465705 TTAGATCCGCTGCTGAAGGG 59.534 55.000 0.00 0.00 38.56 3.95
552 555 7.339482 ACTTTAGGGCTCTATAAACAGGAAAG 58.661 38.462 0.00 0.00 0.00 2.62
713 721 7.224753 CGGCTATCATCTGTAACTGTTGTATTT 59.775 37.037 2.69 0.00 0.00 1.40
750 758 7.649705 GGGAAAGAATCTGAAGAACTCAAAAAC 59.350 37.037 0.00 0.00 32.17 2.43
755 764 8.139989 AGAATCTGAAGAACTCAAAAACCATTG 58.860 33.333 0.00 0.00 32.17 2.82
766 775 3.751479 AAAACCATTGCCTCTTTCACC 57.249 42.857 0.00 0.00 0.00 4.02
767 776 1.632589 AACCATTGCCTCTTTCACCC 58.367 50.000 0.00 0.00 0.00 4.61
781 790 0.770499 TCACCCCTGTTGAATCTGCA 59.230 50.000 0.00 0.00 0.00 4.41
784 793 1.076024 ACCCCTGTTGAATCTGCACAT 59.924 47.619 0.00 0.00 0.00 3.21
820 829 2.223782 TGGTGATGTTCTTTGCTTGTGC 60.224 45.455 0.00 0.00 40.20 4.57
925 935 1.401199 GCTTGCTCATTTCAGCTCTCC 59.599 52.381 0.00 0.00 40.39 3.71
940 950 2.844966 GCTCTCCCCTTTAACTAACCCT 59.155 50.000 0.00 0.00 0.00 4.34
949 959 5.708697 CCCTTTAACTAACCCTGTAACCTTG 59.291 44.000 0.00 0.00 0.00 3.61
1023 1035 2.553086 GCTGAGCATGAAGGAGAAGAG 58.447 52.381 0.00 0.00 0.00 2.85
1035 1047 2.564947 AGGAGAAGAGTACAAGGTGCTG 59.435 50.000 0.00 0.00 0.00 4.41
1038 1050 4.323104 GGAGAAGAGTACAAGGTGCTGATT 60.323 45.833 0.00 0.00 0.00 2.57
1068 1080 1.890041 CAAAGACGCCGGTGAACCA 60.890 57.895 24.59 0.00 35.14 3.67
1080 1092 1.092921 GTGAACCACACCAAGACGCA 61.093 55.000 0.00 0.00 43.05 5.24
1088 1100 1.079819 ACCAAGACGCAGACGATGG 60.080 57.895 0.00 0.76 43.93 3.51
1089 1101 1.079819 CCAAGACGCAGACGATGGT 60.080 57.895 0.00 0.00 43.93 3.55
1137 1149 3.742983 GGTCATGAACCTCGTCCTC 57.257 57.895 0.00 0.00 45.45 3.71
1464 1476 4.717629 TTCCACACCGCGCTCTCG 62.718 66.667 5.56 0.00 39.07 4.04
1476 1488 1.577328 CGCTCTCGTTGGTGGCATTT 61.577 55.000 0.00 0.00 0.00 2.32
1684 1718 1.810151 GCTGAACATTTTGGCGACCTA 59.190 47.619 0.00 0.00 0.00 3.08
1713 1747 1.257743 CCTGAACCCTGAAGTCGAGA 58.742 55.000 0.00 0.00 0.00 4.04
1718 1752 0.612453 ACCCTGAAGTCGAGACCTCC 60.612 60.000 0.00 0.00 0.00 4.30
1751 1802 7.532571 GCATGTGAGCTTGCATATATGATTTA 58.467 34.615 17.10 0.00 42.96 1.40
1780 1831 8.628630 TGTTGGATATGTGTATGTTTGAAAGA 57.371 30.769 0.00 0.00 0.00 2.52
1795 1846 4.840401 TGAAAGATGTTACGCGATTGAG 57.160 40.909 15.93 0.00 0.00 3.02
1820 1871 4.884668 TCTCTTGTGGAATTAACCGAGT 57.115 40.909 0.00 0.00 0.00 4.18
1822 1873 3.933332 CTCTTGTGGAATTAACCGAGTCC 59.067 47.826 0.00 0.00 34.46 3.85
1823 1874 3.325425 TCTTGTGGAATTAACCGAGTCCA 59.675 43.478 0.00 0.00 41.12 4.02
1824 1875 3.328382 TGTGGAATTAACCGAGTCCAG 57.672 47.619 0.00 0.00 43.68 3.86
1825 1876 2.007608 GTGGAATTAACCGAGTCCAGC 58.992 52.381 0.00 0.00 43.68 4.85
1826 1877 1.906574 TGGAATTAACCGAGTCCAGCT 59.093 47.619 0.00 0.00 38.74 4.24
1856 1907 9.974980 ATGTCAAATGTATACGTATGTACATCA 57.025 29.630 19.37 14.61 40.98 3.07
1863 1914 8.173542 TGTATACGTATGTACATCATTGTCCT 57.826 34.615 18.37 1.86 37.28 3.85
1864 1915 8.294577 TGTATACGTATGTACATCATTGTCCTC 58.705 37.037 18.37 0.00 37.28 3.71
1865 1916 5.854010 ACGTATGTACATCATTGTCCTCT 57.146 39.130 12.68 0.00 37.28 3.69
1866 1917 6.222038 ACGTATGTACATCATTGTCCTCTT 57.778 37.500 12.68 0.00 37.28 2.85
1868 1919 7.778083 ACGTATGTACATCATTGTCCTCTTTA 58.222 34.615 12.68 0.00 37.28 1.85
1869 1920 7.921214 ACGTATGTACATCATTGTCCTCTTTAG 59.079 37.037 12.68 0.00 37.28 1.85
1914 1969 0.816018 GGCGAGAGATGAGACGAGGA 60.816 60.000 0.00 0.00 0.00 3.71
2029 2084 3.611517 CATCAATCAAATCGGCTCGAAC 58.388 45.455 1.44 0.00 39.99 3.95
2049 2125 3.399330 ACGTTATTCACAGGTTCTGGTG 58.601 45.455 0.00 0.00 35.51 4.17
2050 2126 3.181458 ACGTTATTCACAGGTTCTGGTGT 60.181 43.478 0.00 0.00 35.51 4.16
2052 2128 4.387862 CGTTATTCACAGGTTCTGGTGTAC 59.612 45.833 0.00 0.00 35.51 2.90
2053 2129 2.519377 TTCACAGGTTCTGGTGTACG 57.481 50.000 0.00 0.00 35.51 3.67
2054 2130 1.405872 TCACAGGTTCTGGTGTACGT 58.594 50.000 0.00 0.00 35.51 3.57
2055 2131 2.585330 TCACAGGTTCTGGTGTACGTA 58.415 47.619 0.00 0.00 35.51 3.57
2056 2132 2.294233 TCACAGGTTCTGGTGTACGTAC 59.706 50.000 18.90 18.90 35.51 3.67
2057 2133 1.267806 ACAGGTTCTGGTGTACGTACG 59.732 52.381 20.18 15.01 35.51 3.67
2058 2134 1.267806 CAGGTTCTGGTGTACGTACGT 59.732 52.381 25.98 25.98 0.00 3.57
2059 2135 2.483877 CAGGTTCTGGTGTACGTACGTA 59.516 50.000 23.60 23.60 0.00 3.57
2060 2136 3.127548 CAGGTTCTGGTGTACGTACGTAT 59.872 47.826 29.05 7.54 32.82 3.06
2063 2139 4.324402 GGTTCTGGTGTACGTACGTATTTG 59.676 45.833 29.05 17.42 32.82 2.32
2064 2140 4.095410 TCTGGTGTACGTACGTATTTGG 57.905 45.455 29.05 17.94 32.82 3.28
2071 2147 4.398988 TGTACGTACGTATTTGGGTGAGAT 59.601 41.667 29.05 0.92 32.82 2.75
2081 2157 1.444933 TGGGTGAGATTTCAGGTGGT 58.555 50.000 0.00 0.00 32.98 4.16
2083 2159 1.614317 GGGTGAGATTTCAGGTGGTGG 60.614 57.143 0.00 0.00 32.98 4.61
2084 2160 1.168714 GTGAGATTTCAGGTGGTGGC 58.831 55.000 0.00 0.00 32.98 5.01
2088 2164 1.637553 AGATTTCAGGTGGTGGCTGAT 59.362 47.619 0.00 0.00 0.00 2.90
2089 2165 1.747355 GATTTCAGGTGGTGGCTGATG 59.253 52.381 0.00 0.00 0.00 3.07
2090 2166 0.478072 TTTCAGGTGGTGGCTGATGT 59.522 50.000 0.00 0.00 0.00 3.06
2091 2167 0.250858 TTCAGGTGGTGGCTGATGTG 60.251 55.000 0.00 0.00 0.00 3.21
2201 2277 0.934496 CCTGCAGACGAAACGAACAA 59.066 50.000 17.39 0.00 0.00 2.83
2204 2280 0.384353 GCAGACGAAACGAACAAGCC 60.384 55.000 0.00 0.00 0.00 4.35
2206 2282 1.329292 CAGACGAAACGAACAAGCCAA 59.671 47.619 0.00 0.00 0.00 4.52
2211 2291 1.849829 GAAACGAACAAGCCAAAACGG 59.150 47.619 0.00 0.00 38.11 4.44
2233 2313 0.392193 AGAAACAGCAGAGCCGATGG 60.392 55.000 0.00 0.00 0.00 3.51
2275 2355 0.915364 GAATGGGAGAGACCTTGGCT 59.085 55.000 0.00 0.00 38.98 4.75
2442 2523 0.108424 AAGCTAAGCAGAGCAGACGG 60.108 55.000 11.90 0.00 45.43 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.031864 TCAAGTTTAGCAGAAACATTTGTTGAA 58.968 29.630 14.48 1.77 38.44 2.69
43 44 3.270877 ACCGGCAGCTTATCAAGTTTAG 58.729 45.455 0.00 0.00 0.00 1.85
56 57 0.101759 TATACGACAAGACCGGCAGC 59.898 55.000 0.00 0.00 0.00 5.25
65 67 7.409449 GCATTATCGCTAACTGTATACGACAAG 60.409 40.741 0.00 0.00 37.70 3.16
76 78 7.767745 ATATCATGAGCATTATCGCTAACTG 57.232 36.000 0.09 0.00 44.01 3.16
106 109 5.986135 CCTGCAAGCAAGTACTATTAGTAGG 59.014 44.000 3.75 0.61 30.12 3.18
287 290 9.609346 GCCAGAAAGTTAGAAGTTACCAATATA 57.391 33.333 0.00 0.00 0.00 0.86
288 291 8.107095 TGCCAGAAAGTTAGAAGTTACCAATAT 58.893 33.333 0.00 0.00 0.00 1.28
289 292 7.455058 TGCCAGAAAGTTAGAAGTTACCAATA 58.545 34.615 0.00 0.00 0.00 1.90
290 293 6.303839 TGCCAGAAAGTTAGAAGTTACCAAT 58.696 36.000 0.00 0.00 0.00 3.16
415 418 1.194781 TTGGTGACCTCAGAGGGAGC 61.195 60.000 21.31 15.70 42.62 4.70
636 644 5.452077 CCATACCGGTTCCTCAAAAACAAAA 60.452 40.000 15.04 0.00 0.00 2.44
750 758 0.040204 AGGGGTGAAAGAGGCAATGG 59.960 55.000 0.00 0.00 0.00 3.16
755 764 0.110486 TCAACAGGGGTGAAAGAGGC 59.890 55.000 0.00 0.00 0.00 4.70
766 775 5.587388 AATAATGTGCAGATTCAACAGGG 57.413 39.130 13.03 0.00 0.00 4.45
767 776 7.318141 AGAAAATAATGTGCAGATTCAACAGG 58.682 34.615 13.03 0.00 0.00 4.00
781 790 8.055181 ACATCACCACCTATGAGAAAATAATGT 58.945 33.333 0.00 0.00 0.00 2.71
784 793 8.328758 AGAACATCACCACCTATGAGAAAATAA 58.671 33.333 0.00 0.00 0.00 1.40
796 805 2.624838 CAAGCAAAGAACATCACCACCT 59.375 45.455 0.00 0.00 0.00 4.00
820 829 0.742505 AACGGAGCATTGCCATCATG 59.257 50.000 4.70 0.00 0.00 3.07
822 831 0.527113 CAAACGGAGCATTGCCATCA 59.473 50.000 4.70 0.00 0.00 3.07
823 832 0.803380 GCAAACGGAGCATTGCCATC 60.803 55.000 4.70 0.00 44.43 3.51
925 935 5.509832 AGGTTACAGGGTTAGTTAAAGGG 57.490 43.478 0.00 0.00 0.00 3.95
940 950 4.594123 TTGATGAGACGACAAGGTTACA 57.406 40.909 0.00 0.00 0.00 2.41
949 959 2.489971 TGTTGGGTTTGATGAGACGAC 58.510 47.619 0.00 0.00 0.00 4.34
997 1009 1.282738 TCCTTCATGCTCAGCCATTGA 59.717 47.619 0.00 0.00 0.00 2.57
1011 1023 3.006967 GCACCTTGTACTCTTCTCCTTCA 59.993 47.826 0.00 0.00 0.00 3.02
1023 1035 4.871993 CTGATCAATCAGCACCTTGTAC 57.128 45.455 7.05 0.00 46.63 2.90
1035 1047 3.063180 CGTCTTTGCTGGTCTGATCAATC 59.937 47.826 0.00 0.00 0.00 2.67
1038 1050 1.941209 GCGTCTTTGCTGGTCTGATCA 60.941 52.381 0.00 0.00 0.00 2.92
1068 1080 0.667487 CATCGTCTGCGTCTTGGTGT 60.667 55.000 0.00 0.00 39.49 4.16
1080 1092 1.213013 GTCAGCGTCACCATCGTCT 59.787 57.895 0.00 0.00 0.00 4.18
1089 1101 2.643272 GAGGTGTCGTCAGCGTCA 59.357 61.111 6.22 0.00 45.42 4.35
1464 1476 1.039856 AGGTCACAAATGCCACCAAC 58.960 50.000 4.65 0.00 0.00 3.77
1465 1477 1.686052 GAAGGTCACAAATGCCACCAA 59.314 47.619 4.65 0.00 0.00 3.67
1473 1485 2.332654 GGCGGCGAAGGTCACAAAT 61.333 57.895 12.98 0.00 0.00 2.32
1476 1488 4.373116 GAGGCGGCGAAGGTCACA 62.373 66.667 12.98 0.00 0.00 3.58
1713 1747 1.610673 ACATGCGTCTCAGGGAGGT 60.611 57.895 0.00 0.00 32.91 3.85
1718 1752 0.390866 AAGCTCACATGCGTCTCAGG 60.391 55.000 0.00 0.00 38.13 3.86
1780 1831 4.051922 GAGAATCCTCAATCGCGTAACAT 58.948 43.478 5.77 0.00 39.24 2.71
1787 1838 2.611292 CCACAAGAGAATCCTCAATCGC 59.389 50.000 0.00 0.00 41.87 4.58
1795 1846 5.183228 TCGGTTAATTCCACAAGAGAATCC 58.817 41.667 0.00 0.00 32.80 3.01
1820 1871 3.708403 ACATTTGACATCTGAGCTGGA 57.292 42.857 0.00 0.00 0.00 3.86
1822 1873 5.750547 ACGTATACATTTGACATCTGAGCTG 59.249 40.000 3.32 0.00 0.00 4.24
1823 1874 5.907207 ACGTATACATTTGACATCTGAGCT 58.093 37.500 3.32 0.00 0.00 4.09
1824 1875 7.382488 ACATACGTATACATTTGACATCTGAGC 59.618 37.037 7.96 0.00 0.00 4.26
1825 1876 8.803201 ACATACGTATACATTTGACATCTGAG 57.197 34.615 7.96 0.00 0.00 3.35
1826 1877 9.673454 GTACATACGTATACATTTGACATCTGA 57.327 33.333 7.96 0.00 0.00 3.27
1859 1910 7.492352 TTTCAGCTTTTGTACTAAAGAGGAC 57.508 36.000 27.02 13.18 37.31 3.85
1860 1911 7.554835 TGTTTTCAGCTTTTGTACTAAAGAGGA 59.445 33.333 27.02 20.36 37.31 3.71
1861 1912 7.703328 TGTTTTCAGCTTTTGTACTAAAGAGG 58.297 34.615 27.02 18.86 37.31 3.69
1863 1914 8.500753 TCTGTTTTCAGCTTTTGTACTAAAGA 57.499 30.769 27.02 9.35 46.59 2.52
1864 1915 8.398665 ACTCTGTTTTCAGCTTTTGTACTAAAG 58.601 33.333 21.00 21.00 46.59 1.85
1865 1916 8.181573 CACTCTGTTTTCAGCTTTTGTACTAAA 58.818 33.333 2.54 2.54 46.59 1.85
1866 1917 7.335924 ACACTCTGTTTTCAGCTTTTGTACTAA 59.664 33.333 0.00 0.00 46.59 2.24
1868 1919 5.648092 ACACTCTGTTTTCAGCTTTTGTACT 59.352 36.000 0.00 0.00 46.59 2.73
1869 1920 5.880341 ACACTCTGTTTTCAGCTTTTGTAC 58.120 37.500 0.00 0.00 46.59 2.90
1871 1922 6.404734 CCTTACACTCTGTTTTCAGCTTTTGT 60.405 38.462 0.00 0.00 46.59 2.83
1872 1923 5.973565 CCTTACACTCTGTTTTCAGCTTTTG 59.026 40.000 0.00 0.00 46.59 2.44
2029 2084 3.399330 ACACCAGAACCTGTGAATAACG 58.601 45.455 0.00 0.00 0.00 3.18
2049 2125 4.355543 TCTCACCCAAATACGTACGTAC 57.644 45.455 28.99 15.90 33.01 3.67
2050 2126 5.581126 AATCTCACCCAAATACGTACGTA 57.419 39.130 28.62 28.62 34.87 3.57
2052 2128 4.865925 TGAAATCTCACCCAAATACGTACG 59.134 41.667 15.01 15.01 0.00 3.67
2053 2129 5.293569 CCTGAAATCTCACCCAAATACGTAC 59.706 44.000 0.00 0.00 0.00 3.67
2054 2130 5.046159 ACCTGAAATCTCACCCAAATACGTA 60.046 40.000 0.00 0.00 0.00 3.57
2055 2131 4.261801 CCTGAAATCTCACCCAAATACGT 58.738 43.478 0.00 0.00 0.00 3.57
2056 2132 4.094887 CACCTGAAATCTCACCCAAATACG 59.905 45.833 0.00 0.00 0.00 3.06
2057 2133 4.399303 CCACCTGAAATCTCACCCAAATAC 59.601 45.833 0.00 0.00 0.00 1.89
2058 2134 4.044065 ACCACCTGAAATCTCACCCAAATA 59.956 41.667 0.00 0.00 0.00 1.40
2059 2135 3.181418 ACCACCTGAAATCTCACCCAAAT 60.181 43.478 0.00 0.00 0.00 2.32
2060 2136 2.176798 ACCACCTGAAATCTCACCCAAA 59.823 45.455 0.00 0.00 0.00 3.28
2063 2139 1.614317 CCACCACCTGAAATCTCACCC 60.614 57.143 0.00 0.00 0.00 4.61
2064 2140 1.826385 CCACCACCTGAAATCTCACC 58.174 55.000 0.00 0.00 0.00 4.02
2071 2147 0.478072 ACATCAGCCACCACCTGAAA 59.522 50.000 0.00 0.00 42.12 2.69
2081 2157 1.079197 CTGGTACGCACATCAGCCA 60.079 57.895 0.00 0.00 0.00 4.75
2083 2159 0.443869 CAACTGGTACGCACATCAGC 59.556 55.000 0.00 0.00 0.00 4.26
2084 2160 0.443869 GCAACTGGTACGCACATCAG 59.556 55.000 0.00 0.00 0.00 2.90
2088 2164 2.663520 CGGCAACTGGTACGCACA 60.664 61.111 0.00 0.00 0.00 4.57
2201 2277 1.676006 CTGTTTCTCACCGTTTTGGCT 59.324 47.619 0.00 0.00 43.94 4.75
2204 2280 2.354510 TCTGCTGTTTCTCACCGTTTTG 59.645 45.455 0.00 0.00 0.00 2.44
2206 2282 2.213499 CTCTGCTGTTTCTCACCGTTT 58.787 47.619 0.00 0.00 0.00 3.60
2211 2291 0.319900 TCGGCTCTGCTGTTTCTCAC 60.320 55.000 0.00 0.00 36.18 3.51
2233 2313 2.617274 GCCACTCTCCAACGTTGCC 61.617 63.158 22.93 0.00 0.00 4.52
2241 2321 0.820226 CATTCTCTCGCCACTCTCCA 59.180 55.000 0.00 0.00 0.00 3.86
2242 2322 0.103937 CCATTCTCTCGCCACTCTCC 59.896 60.000 0.00 0.00 0.00 3.71
2308 2388 4.031129 CTCAGCCTGCTGCACCCT 62.031 66.667 14.22 0.00 44.83 4.34
2413 2493 4.261994 GCTCTGCTTAGCTTAGCTGACTAT 60.262 45.833 24.72 0.00 42.05 2.12
2414 2494 3.067461 GCTCTGCTTAGCTTAGCTGACTA 59.933 47.826 24.72 9.86 42.05 2.59
2442 2523 0.594796 CCTTTCGCCGCCATTAATGC 60.595 55.000 10.11 5.03 0.00 3.56
2551 2632 2.027003 ACTACTTCCTCGACCTCTCG 57.973 55.000 0.00 0.00 41.65 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.