>input_sequence_72253
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---------------------------------------------------ATGGCTGAGCATGAAGGAGAAGAGTACAA
GGTGCTGATTGATCAGACCAGCAAAGACGCCGGTGAACCACACCAAGACGCAGACGATGGTGACGCTGACGACACCTCGA
GCTTCATCCTGGTCATGAACCTCGTCCTCAGCGGCACGGCCCGGCTCAACGTGCTCCTCCCGACGGCCACCATCCTGACC
TTCGCCATCTTCGCGCCGCTGGTGACCGACGACGGCAAGTGCGCGCGCGTCAACCGCGTGCTCACCGGCGCGTTCGTGCT
GCTCTGCGCCGCCTCCTGCGTCTTCTTCACGCTCACCGACAGCTTCCGCTCCGCCACGGGCCGGCTCCGCTACGGCGTGG
CCACCCCGACGGGTATCGCCACGTTCTGCGCCGGCGGGGGGAGCCGGAGGAAGGCGCCGAGGGAGCCGGAGAGGTACAGG
CTGCGGTGGTCGGACCTGTTCCACACCGCGCTCTCGTTGGTGGCATTTGTGACCTTCGCCGCCTCCCACCACGACATCGT
CCGGTGCTACTACCCCGGCGCGCCCAGGAAGGTGGTGAACACCGTGCCCCTCGTCGTCGGCTTCGTCGTCAGCCTCCTCT
TCGTCATGTTCCCTTCCAAGAGGAGGGGGATCGGCTACCCGTTCCTTCTCAGGACCGACCTCGTGTACCTACGGCGCTGA
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>chr3B_1_TraesCS3B01G440900
TGTAAATTATCTAACATATGTTTGTATTCAACAAATGTTTCTGCTAAACTTGATAAG-CTGCCGGTCTTGTCGTATACAG
TTAGCGATAATGCTCAT-GATATTATAGCCTACTAATAGTACTTGCTTGCAGGACTGGGATCGTCAAAATCCAACTCAAA
TTGTGACAGAGATGTGTGGTTTTGTCACAATCCTTTCTGGAACATTTCTTCTTCATAAGACTAAAGATATGGTTGATGGT
ATGGTTCCACTCCTCCCTTCTTCTGGTTTGCACATAGTAACTAGTAGAGTATATTGGTAACTTCTAACTTTCTGGCATTA
TAGGTCTCCCACCGACTCTGCCTATCAGGATTCCGAAACATGGTGATGAAAACGGCTATGCGTCTGAAGGAATTCCTCTT
AGATCCGCTGCTGAAGGGCTCCCTCTGAGGTCACCAAGGGCAGCAGAATAATTTTGACCAACTTGAGATGCTCAGTGATC
CTTGTGGCCATGGTTCGCATTCTTTCATTCTATCCAGTCTGTAGATTGTACTTTAGGGCTCTATAAACAGGAAAGGGCTC
GTTCCCCCTTGTAGTTTTCGAGGAACCGGTAGAGTATT-GGGGATATATGTCTTATACATCAAAAGTTTT----TCATGT
ATTTTTTGTTTTTGAGGAACCGGTATGGTATAGTATTGGGGATGCATCTTATACCGGCTATCATCTGTAACTGTTGTATT
TTTTGAAAATAGGGAAAGAATCTGAAGAACTCAAAAAC-CATTGCCTCTTTCACCCCTGTTGAATCTGCACATTATTTTC
TCATAGGTGGTGATGTTCTTTGCTTGTGCATGATGGCAATGCTCCGTTTGCCTCGCTGCACTTGCGAAAGCAATCCTTTC
TTCCA-GTCCAAAGCCAGGCAGATTCTTTTCAGCGCTTGCTCATTTCAGCTCTCCCCTTTAACTAACCCTGTAACCTTGT
CGTCTCATCAAACCCAACAATCTCACAC--CCGCTTGCACACGCACCATCAATGGCTGAGCATGAAGGAGAAGAGTACAA
GGTGCTGATTGATCAGACCAGCAAAGACGCCGGTGAACCACACCAAGACGCAGACGATGGTGACGCTGACGACACCTCGA
GCTTCATCCTGGTCATGAACCTCGTCCTCAGCGGCACGGCCCGGCTCAACGTGCTCCTCCCGACGGCCACCATCCTGACC
TTCGCCATCTTCGCGCCGCTGGTGACCGACGACGGCAAGTGCGCGCGCGTCAACCGCGTGCTCACCGGCGCGTTCGTGCT
GCTCTGCGCCGCCTCCTGCGTCTTCTTCACGCTCACCGACAGCTTCCGCTCCGCCACGGGCCGGCTCCGCTACGGCGTGG
CCACCCCGACGGGTATCGCCACGTTCTGCGCCGGCGGGGGGAGCCGGAGGAAGGCGCCGAGGGAGCCGGAGAGGTACAGG
CTGCGGTGGTCGGACCTGTTCCACACCGCGCTCTCGTTGGTGGCATTTGTGACCTTCGCCGCCTCCCACCACGACATCGT
CCGGTGCTACTACCCCGGCGCGCCCAGGAAGGTGGTGAACACCGTGCCCCTCGTCGTCGGCTTCGTCGTCAGCCTCCTCT
TCGTCATGTTCCCTTCCAAGAGGAGGGGGATCGGCTACCCGTTCCTTCTCAGGACCGACCTCGTGTACCTACGGCGCTGA
ACATTTTGGCGACC----------------------TATGCAGTGGACCTGAACCCTGAAGTCGAGACCTCCCT------
----------GAGACGCATGTGAGC-TTGCATATATGATTTAATTTGTTGGATATGTGTATGTTTGAAAGATGTTACGCG
ATTGAGGATTCTCTTGTGGAATTAACCGAGTCCAGCTCAGATGTCAAATGTATACGTATGTACATCATTGTCCTCTTTAG
TACA----AAAGCTGAAAACAGAGTGTAAGGCGAGAGATGAGACGAGGAAGCTGCCGGACGGTGGCTCCTCATTCCTCGG
CGTCCGGATCAGGCTCGAGGCCCGATATTTGCTTCAGCGGTTTCCAGATGAATTTTCTCCTGCATCAATCAAATCGGCTC
GAACGTTATTCACAGGTTCTGG---------------------TGTACGTACGTATTTGGGTGAGATTTCAGGTGGTGGC
TGATGTGCGTACCAGTTGCCGCATTCCGCGATGACCCTGACTTTGGGGCGGAGGTCAGGGAGCATGGCCAGGAACTGCAG
CTCGGCCTTGGACAGAACCTGCAGACGAAACGAACAAGCCAA----AACGGTGAGAAACAGCAGAGCCGATGGGCAACGT
TGGAGAGTGGCGAGAGAATGGGAGAGACCTTGGCTTCGTAGACCCAGACGATGAGCCCTTTGGCGTCAGGGTGCAGCAGG
CTGAGCCTGTAGTCCACCTCCGGCGGGAAGTACCACCTCGCCACCGGCTGCCTCCCGAGGCTAGGCTGCAGCAGCAAAGC
AAGCAGCGCACCATAGTCAGCTAAGCTA-AGCAGAGCAGACGGCATTAATGGCGGCGAAAGGGAAATGCATCATCGTCGG
TTCTGCTGACGGACCGGGCAGACGGGGTGGATCTTGGTGAGGGTGGACTCGGGGTCGCCGAGGCCGCGCGCCGAGAGGTC
GAGGAAGTAGTAGCCCTGGTAGCGGAGGCGGTTGAGGTAGCGGCCCTCGTAGCCGCCCTCGTGCGGCGGGTAGATGGCCA
GCGCCTTGTGCTCCTCCACGTCGTCCAGC
>chr3A_1
TGTAAATTATCTAATGTATGTTTATAGTCAACAAATGTTTCTGTTAAACTTGATAAACCGT-CGGTTTTATCGTATAGAG
TTAGTGACAATGCTCACAGATATTGT--ACTACTAATACTACTTGCTTGCAGGACTGGGATCGTCAAAATCCAACTCAAA
TTGTGACAGAGATGTGTGGTTTTGTGACAATCCTTTCTGGGACATTTCTTCTTCATAAGACTAAAGATATGGTTGATGGT
ATGGTTCCACTCCTCCCTTCTTCTGGTTTGCACATGGTAAC---TATAT----TTGGTAACTTCTAACTTTCTGGCATTA
TAGGTCTCCCACCGACTCTGCCTATCAGGATTCCGAAACATGGTGATGAAAACGGCTATGCGTCTGAAGGAATTCCTCTT
AGATCCGCTGCTGAAGGCCTCCCTCTGAGGTCACCAAGGGCAGCAGAATAATTTTGACCAACTTGAGATGCTCAGTGATC
CTTATGGCCATGGTCCGCATTCTTTCATTCTATCCAGTCTGTAGATTGTACTTTAGGGCTCTATAAACAGGAAAAGGCTC
GTTCCCCCTTGTAGTTTTCGAGGAACCGGTAGAGTGTCAGGGGATATATGTCTTATACATCAAAAGTTTT----CCATGT
ATT-TTTGTTTTTGAGGAACCGGTATGGTATAGTATTGGGGATGCATCTTGTACCGGCTATCATCTGTAACTGTTGTATT
CTTTGAAAATAGGGAAAGAATCTGAAGAACTCAAAAAATCATTCCCTCTTTCACTTCAGTTGAATCTTCGCACCATTTTC
TCATTGGTGGTGATGTTCTTTGCTTGTGTA--ATAGCAATGTTCCGTTTGCCTCGCTGCACTTGCGAAAGCAATCCTTTC
TTCCATGTCCAAAGCCAGGCAGATTCTTTTCAGCGCTTGCTCATTTCAGCTCTCTCCTTTAACTAACCCCGTAACCTTCT
CGTCTCATCAAACCCAACAATCTCAAAC--CCGCTTGCACACGCACCGGCAATGGCTGAGCAAGAAGGAGAAGAATACAA
GGTGCTCATCGATCAGACCAGCAAAGACGCCGGTGAACCGCACCAAGACGCCGACGATGACGACGCTGACGACACCTCGA
GCTTCATCCTGGTCATGAACCTCGTCCTGAGCGGCACGGCCCGGCTCAACGTGCTCCTCCCGACGGCCACCATCCTGACC
TTCGCCATCTTCGCGCCGCTGGTCACCGACGACGGCAAGTGCGCGCGCGTCAACCGCGTGCTCACCGGCGCGTTCGTGCT
GCTCTGCGCCGCCTCCTGCGTCTTCTTCACGCTCACCGACAGCTTCCGCTCCGCCACGGGCCGGCTCCGCTACGGCGTGG
CCACCCCGACGGGTATCGCGACGTTCTGCGCCGGCGGGGGGAGCCGGAGGAAGGCGCCGAGGGAGCCGGAGAGGTACAGG
CTGCGGTGGTCGGACCTGTTCCACACCGCGCTCTCCCTGGTGGCCTTCGTGACCTTCGCCGCCTCCCACCACGACATCGT
CCGGTGCTACTACCCCGGCGCGCCCAGGAAGGTGGTGAACACCGTGCCCCTCGTCGTCGGCTTCGTCGTCAGCCTCCTGT
TCGTCATGTTCCCTTCCAAGAGGAGGGGGATCGGCTACCCCTTCCTGCTCAGGACCGACCTCGTGTACCTGCGTCGCTGA
ACATTTTGGCCGTGCCGTGCCGTGCCGTGCTGTGCATGTGCAGTGGACCTGAATCCAGAAGCTGAGGCCTCTGA------
--CTGTATCGGA-ACGCGTGTGAGC-TTGCATATATGATTTGATTTGTTGGATC--TGTATATTTGAAAGGCTTTACACG
ATTGATGATTCTCTTGTGAAACTGAGCA-----------------AAATGTAGACTTATGTACATCCTTTCTCGTGCTCC
TC-AGTACAAAGCTGAAAACAGAGCGTAAGGCGAGAGATTGAACGAGGTAGCTGCCGGAGGGTGGCTCCTCATTCCTCGG
CGTCCGGATCAGGCTCGAGGCCCGATATTTGCTTCAGCGGTTTCCAGATGAATTTTCTCCTGCATCAATCAAATCGGCTC
GAAAGTTATTCACAGATTCTGG---------------------TAAA---------TTCAGTGAGAGTTCAGGTGGAGAT
TGA----CGTACCAGTTGCCGCATTCCGCGATCACCCTGACTTTGGGGCGGAGGTCGGGGAGCATGGCCAGGAACTGCAG
CTCGGCCTTGGACAGAACCTGCAGACGGAACGAACACGCGAC----AACGATGAGAAATAGCAGAGCCGATGAGCAACGT
GTGAGAGTGGCGAGAGAATGGGGGAGACCTTGGCCTCGTAGACCCAGACGATGAGCCCTTTGGCGTCCGGGTGCAGCAGG
CTGAGCCTGTAGTCCACCTCCGGCGGGAAGTACCACCTCGCCACCGGCTGCCTCCCGAGGCTAGGCTGCAGCAGCAAAGC
AAGCAGCGCCCCCCAGTCAGCTAAGCTA-AGCAGAGCAGACGACATTAATGGCGGCGAAAGGGAAATGCATCATCGTCGG
CTCTGCTGACGGACCGGGCAGACGGGGTGGATCTTGGTGAGGGTGGACTCGGGGTCGCCGAGGCCGCGCGCGGAGAGGTC
GAGGAAGTAGTAGCCCTGGTAGCGGAGGCGGTTGAGGTAGCGGCCCTCGTAGCCGCCCTCGTGCGGCGGGTAGATGGCCA
GCGCCTTGTGCTCCTCCACGTCGTCCAGC
>chr3D_1
TGTAAATTATCTAACATATGTTTGTTGTCAACAAATGGTTCTGTTAAACTTGATAAAACTGCCAGTTTTGTTGTATAGAG
TTAGTGACAATGCTCACAGATATTATAGACTCCTGATAGTACTTGCTTGCAGGACTGGGATCGTCAAAATCCAACTCAAA
TTGTGACAGAGATGTGTGGTTTTGTGACCATCCTTTCTGGGACATTTCTTCTTCATAAGACTAAAGATATGGTTGATGGT
ATGGTTCCACTCCTCCCTTCT---GGTTTGCACATAGTAACTAGTATAT----TTGGTAACTTCTAACTTTCTGGCATTA
TAGGCCTCCCACCGACTCTGCCTATCAGGATTCCGAAACATGGTGATGAAAACGGCTACGCGTCTGAAGGAATTCCTCTT
AGATCCGCTGCTGAAGGCCTCCCTCTGAGGTCACCGAGGGCAGCAGAATAATTTTGACCAACTTGAGATGCTCAGTGATC
CTTGTGGCCATGGTTCGCATTCTTTCATTCTATCCAGTCTGTAGATTGTACTTTAGGGCTCTATAAACAGGAAAAGGCTC
GTTCCCCCTTGTAGTTTTCGAGGAACCGGTAGAGTATT-GGGGATATATGTCTTATACATCAAAAGTTTTTTTTCCATGT
ATT-TTTGTTTTTGAGGAACCGGTATGGTATAGTATTGGGGATGCATCTTATA-----------CTGTAACTGTTGTATT
ATTTGAAAATGGGGAAAGAATCTGAAGAACT-AAAAAATCATTCCCTCTTTCACTTCTGTTGAATCTGCGCACTATTTTC
TCATTGGCGGTGATGTTCTTTGCGTGTGTA--ATGGCAATGCTCCGTTTGCCTCGCTGCACTTGCGAAAGCAATCCTTTC
TTCCATGTCCAAAGCCAGGCAGATTCTTTTCAGC--TTGCTCATTTCAGCTCTCTCCTTTAACTAACCCCGTAACCTTCT
CGTGTCATCAAACCCAACAATCTCACACACCCGCCTGCACACGCACTACCAATGGCTGAGCAAGGAGGAGAAGAATACAA
GGTGCTCATCGATCAGACCGGCAAAGACGCCGGTGAACCGCACCAAGACGCCGACGATGACGACGCCGACGACACCTCGA
GCTTCATCCTGGTCATGAACCTCGTCCTGAGCGGCACGGCCCGGCTCAACGTGCTCCTCCCGACGGCCACCATCCTGACC
TTCGCCATCTTCGCGCCGCTGGTCACCGACGACGGCAAGTGCGCGCGCGTCAACCGCGTGCTCACCGGCGCGTTCGTGCT
GCTCTGCGCCGCCTCCTGCGTCTTCTTCACGCTCACCGACAGCTTCCGCTCCGCCACGGGCCGGCTCCGCTACGGCGTGG
CCACCCCGGCGGGCATCGCGACGTTCTGCGCCGGCGGGGGGAGCCGGAGGAAGGCGCCGAGGGAGCCGGAGAGGTACAGG
CTGCGGTGGTCGGACCTGTTCCACACCGCGCTGTCCCTGGTGGCCTTCGTGACCTTCGCCGCCTCCCACCACGACATCGT
CCGGTGCTACTACCCCGGCGCGCCCAGGAAGGTGGTGAACACCGTGCCCCTCGTCGTCGGCTTCGTCGTCAGCCTCCTCT
TCGTCATGTTCCCTTCCAAGAGGAGGGGGATCGGCTACCCGTTCCTGCTCCGGACCGACCTCGTGTACCTACGGCGCTGA
ACATTTTGGCGACC----------------------TGTGTAGTGGACCTGAACCCTGAGGTCGAGGCCTCTCTGACTCT
GTCTGTATCGGAGCCGCATGTAAGCTTTGCATATATGATTTGATTTGTTGGAGATGTGTATGTTTGAAAGGTGTTACACG
ATTGATGGTTCTCTTGTGGAATTAACCGAGCC-----CAGATGTCAAATGTATACGTATGTACATACATCATTGTCCTGC
TTTAGTACAAAGCTGAAAACGGAGTGTAAGGCGAGAGATGAGACGAGGCAGCCGCCGGACGGTGGCTCCTCATTCCTCGG
CGTCCGGATCAGGCTCAAGGCCCGATATCTGCTTCAGCGGTTTCCAGATGAATTTTCTCCTGCATCAATCAATCCGGCTC
GAAAGTCATTCACAAGAGAGAACACTCGTCTGTCATGGTTTGTTAAA---------TTCAGTGAGAGTTCAGGTGGAGAT
TGA----TGTACCAGTTGCCGCATTCCGCGATGACCCTGACTTTGGGGCGGAGGTCAGGGAGCATGGCCAGGAACTGCAG
CTCGGCCTTGGACAGAACCTGCAAACGAAACGAACACACGACAGACAACGATGAGAAACAGCGGAGCCGATGAGTAACGT
GTGAGAGCGGCGAGAGCCTGAGAGAGACCTTAGCCTCGTAGACCCAGACGATGAGCCCTTTGGCGTCCGGGTGCAGCAGG
CTGAGCCTGTAGTCCACCTCCGGCGGGAAGTACCACCTCGCCACCGGCTGCCTCCCGAGGCTAGGCTGCAGCAGCAG---
--GCACCGCACCCAAGTCAGTTGTTAAGTAGCAGAGCAGACGACATTCATGGCGGTGAAACGGAGAGGAACGGCGATCGG
TTGTGCTGACGGACCGGGCAGACGGGGTGGATCTTGGTGAGGGTGGACTCGGGGTCGCCGAGGCCGCGCGCGGAGAGGTC
GAGGAAGTAGTAGCCCTGGTAGCGGAGGCGGTTGAGGTAGCGGCCCTCGTAGCCGCCCTCGTGCGGCGGGTAGATGGCCA
GCGCCTTGTGCTCCTCCACGTCGGCCAGC
>SNPs
--------------------------S----------------S------------S---------S----------S--
----S--S--------S-----------S---------------------------------------------------
-------------------------S--------------S---------------------------------------
----------------------------------------------S-SSSSS---------------------------
--------------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------S-----
---S----------------------------------------------------------------------------
S------------------------------------S-----S----------SS-------------S--S-------
----S-----------------------S-SS------------------------------------------------
------------------------------------------------------S--------------S--------S-
------------------------------------------------S-------------S-----------S-----
------S--S-----------------------------S-----------S-------SS-------------------
----------------------------S---------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
-----------------------------------SS-------S--S--------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
-------------------------------------S----------------------------S----S--------
-----------------------------------------S----------------------------S------S--
-----S------------------------S-SSSSS-----------------------------S--SSS-SSSS-SS
-SS---------------------------------------------S-------------------------------
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---S----------------------------------------SS-SSSSSSSSS--SS------S---------S-SS
---SSSS-------------------------------------------------------------------------
------------------------------------S--S-S--------S---------------------S-------
SS--------------------------------S--------------------------------S------------
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------------SS----------------------------S-------------------------------------
-----------------------------------------------------------------------S--------
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>forward_418
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------------------------------------------------------------------------------TT
AGATCCGCTGCTGAAGGG--------------------------------------------------------------
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>reverse_2322
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-GGAGAGTGGCGAGAGAATGG-----------------------------------------------------------
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