Multiple sequence alignment - TraesCS3B01G434900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G434900 chr3B 100.000 2390 0 0 1 2390 673099185 673096796 0.000000e+00 4414.0
1 TraesCS3B01G434900 chr3B 85.791 556 57 11 1438 1983 673141617 673141074 9.590000e-159 569.0
2 TraesCS3B01G434900 chr3B 86.698 421 45 8 1509 1929 673161988 673161579 7.790000e-125 457.0
3 TraesCS3B01G434900 chr3B 85.847 431 36 18 991 1419 673142105 673141698 3.650000e-118 435.0
4 TraesCS3B01G434900 chr3B 98.578 211 3 0 1207 1417 673106340 673106130 8.070000e-100 374.0
5 TraesCS3B01G434900 chr3B 84.356 326 40 7 1514 1839 673105990 673105676 2.310000e-80 309.0
6 TraesCS3B01G434900 chr3B 96.491 114 3 1 457 569 776360337 776360224 1.130000e-43 187.0
7 TraesCS3B01G434900 chr3B 94.167 120 4 3 448 566 576562753 576562870 1.890000e-41 180.0
8 TraesCS3B01G434900 chr3B 91.473 129 7 4 442 568 552954543 552954417 8.780000e-40 174.0
9 TraesCS3B01G434900 chr3B 96.970 99 3 0 993 1091 673106516 673106418 1.470000e-37 167.0
10 TraesCS3B01G434900 chr3B 87.970 133 11 5 438 566 469636299 469636430 4.110000e-33 152.0
11 TraesCS3B01G434900 chr3D 88.621 1863 125 38 565 2368 511444747 511442913 0.000000e+00 2185.0
12 TraesCS3B01G434900 chr3D 85.115 524 45 19 993 1512 511451392 511450898 2.740000e-139 505.0
13 TraesCS3B01G434900 chr3D 85.196 331 38 8 1509 1839 511448431 511448112 1.770000e-86 329.0
14 TraesCS3B01G434900 chr3D 79.397 398 56 19 1990 2368 612679827 612679437 8.480000e-65 257.0
15 TraesCS3B01G434900 chr3A 97.712 437 10 0 987 1423 647499753 647499317 0.000000e+00 752.0
16 TraesCS3B01G434900 chr3A 91.932 533 37 3 1455 1983 647499317 647498787 0.000000e+00 741.0
17 TraesCS3B01G434900 chr3A 86.266 466 35 20 958 1421 647510242 647509804 1.660000e-131 479.0
18 TraesCS3B01G434900 chr3A 85.787 394 18 19 568 953 647500108 647499745 1.340000e-102 383.0
19 TraesCS3B01G434900 chr3A 83.420 386 42 10 1509 1880 647509437 647509060 2.940000e-89 339.0
20 TraesCS3B01G434900 chr3A 95.726 117 2 3 452 567 152176492 152176378 4.060000e-43 185.0
21 TraesCS3B01G434900 chr3A 93.243 74 5 0 378 451 647500188 647500115 2.510000e-20 110.0
22 TraesCS3B01G434900 chr3A 100.000 29 0 0 356 384 646741161 646741189 1.000000e-03 54.7
23 TraesCS3B01G434900 chr1B 85.714 497 47 19 947 1425 637368518 637369008 9.860000e-139 503.0
24 TraesCS3B01G434900 chr1B 84.388 237 36 1 1600 1836 637369070 637369305 5.140000e-57 231.0
25 TraesCS3B01G434900 chr1B 93.443 122 4 4 446 566 604145226 604145108 6.790000e-41 178.0
26 TraesCS3B01G434900 chr1D 85.776 464 38 22 966 1421 462298686 462299129 1.290000e-127 466.0
27 TraesCS3B01G434900 chr1D 83.884 242 34 4 1597 1837 462300493 462300730 2.390000e-55 226.0
28 TraesCS3B01G434900 chr1D 96.000 75 3 0 1018 1092 465820861 465820935 3.230000e-24 122.0
29 TraesCS3B01G434900 chr1D 93.827 81 4 1 1020 1100 465812154 465812233 1.160000e-23 121.0
30 TraesCS3B01G434900 chr1D 100.000 30 0 0 357 386 98834941 98834970 3.320000e-04 56.5
31 TraesCS3B01G434900 chr1A 83.973 443 50 18 989 1425 554083560 554083987 2.860000e-109 405.0
32 TraesCS3B01G434900 chr1A 97.059 34 0 1 355 387 27277810 27277843 3.320000e-04 56.5
33 TraesCS3B01G434900 chr7B 83.768 345 43 11 2035 2368 659656560 659656902 4.960000e-82 315.0
34 TraesCS3B01G434900 chr4A 81.633 392 57 9 1989 2368 564974589 564974977 6.420000e-81 311.0
35 TraesCS3B01G434900 chr4A 88.000 100 9 1 993 1089 614004483 614004582 5.400000e-22 115.0
36 TraesCS3B01G434900 chr4A 88.235 85 9 1 119 202 644660357 644660273 1.510000e-17 100.0
37 TraesCS3B01G434900 chr4A 88.235 85 9 1 119 202 644710960 644710876 1.510000e-17 100.0
38 TraesCS3B01G434900 chr2B 81.297 401 56 10 1986 2367 158140958 158140558 8.300000e-80 307.0
39 TraesCS3B01G434900 chr2B 100.000 29 0 0 357 385 669438728 669438700 1.000000e-03 54.7
40 TraesCS3B01G434900 chr2D 82.799 343 47 9 2037 2368 630306503 630306844 1.800000e-76 296.0
41 TraesCS3B01G434900 chr2D 95.000 120 3 3 451 568 30303032 30302914 4.060000e-43 185.0
42 TraesCS3B01G434900 chr2D 96.154 52 2 0 308 359 312021609 312021660 4.230000e-13 86.1
43 TraesCS3B01G434900 chr7D 82.558 344 45 8 2036 2368 1424819 1424480 3.010000e-74 289.0
44 TraesCS3B01G434900 chr7D 100.000 29 0 0 357 385 492150925 492150953 1.000000e-03 54.7
45 TraesCS3B01G434900 chr7A 82.267 344 42 15 2036 2368 722768979 722769314 1.810000e-71 279.0
46 TraesCS3B01G434900 chr7A 96.296 54 1 1 306 359 561593491 561593439 1.180000e-13 87.9
47 TraesCS3B01G434900 chr6D 82.493 337 41 13 2043 2368 404615722 404615393 1.810000e-71 279.0
48 TraesCS3B01G434900 chr6D 92.308 65 4 1 319 382 454223245 454223181 9.100000e-15 91.6
49 TraesCS3B01G434900 chr6B 94.355 124 4 3 445 566 520849077 520849199 1.130000e-43 187.0
50 TraesCS3B01G434900 chr6B 91.667 132 7 4 448 576 37764573 37764443 1.890000e-41 180.0
51 TraesCS3B01G434900 chr6B 95.495 111 3 2 461 570 5735001 5734892 2.440000e-40 176.0
52 TraesCS3B01G434900 chr6B 100.000 28 0 0 358 385 173526492 173526465 4.000000e-03 52.8
53 TraesCS3B01G434900 chr6A 94.915 118 5 1 460 576 108945421 108945304 1.460000e-42 183.0
54 TraesCS3B01G434900 chr5B 92.913 127 7 2 461 585 544274435 544274309 1.460000e-42 183.0
55 TraesCS3B01G434900 chr5B 86.139 101 14 0 991 1091 689646057 689646157 2.510000e-20 110.0
56 TraesCS3B01G434900 chr4B 92.913 127 7 2 442 566 364348681 364348555 1.460000e-42 183.0
57 TraesCS3B01G434900 chr5A 92.913 127 6 3 446 569 75061552 75061426 5.250000e-42 182.0
58 TraesCS3B01G434900 chr5D 87.963 108 10 1 985 1089 554577433 554577326 8.970000e-25 124.0
59 TraesCS3B01G434900 chr5D 97.143 70 2 0 1018 1087 410278077 410278146 4.170000e-23 119.0
60 TraesCS3B01G434900 chr5D 90.698 86 4 3 1018 1103 554521311 554521230 6.980000e-21 111.0
61 TraesCS3B01G434900 chr4D 96.000 75 3 0 1018 1092 477089462 477089388 3.230000e-24 122.0
62 TraesCS3B01G434900 chr4D 88.636 44 3 2 341 384 54727289 54727330 4.000000e-03 52.8
63 TraesCS3B01G434900 chrUn 92.593 54 4 0 306 359 281431731 281431784 7.080000e-11 78.7
64 TraesCS3B01G434900 chrUn 92.593 54 4 0 306 359 281433855 281433908 7.080000e-11 78.7
65 TraesCS3B01G434900 chrUn 92.593 54 4 0 306 359 297337297 297337244 7.080000e-11 78.7
66 TraesCS3B01G434900 chrUn 92.593 54 4 0 306 359 313643345 313643292 7.080000e-11 78.7
67 TraesCS3B01G434900 chrUn 92.593 54 4 0 306 359 313645500 313645447 7.080000e-11 78.7
68 TraesCS3B01G434900 chrUn 92.593 54 4 0 306 359 313678366 313678419 7.080000e-11 78.7
69 TraesCS3B01G434900 chrUn 100.000 28 0 0 357 384 194666133 194666106 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G434900 chr3B 673096796 673099185 2389 True 4414.000000 4414 100.000000 1 2390 1 chr3B.!!$R2 2389
1 TraesCS3B01G434900 chr3B 673141074 673142105 1031 True 502.000000 569 85.819000 991 1983 2 chr3B.!!$R6 992
2 TraesCS3B01G434900 chr3B 673105676 673106516 840 True 283.333333 374 93.301333 993 1839 3 chr3B.!!$R5 846
3 TraesCS3B01G434900 chr3D 511442913 511451392 8479 True 1006.333333 2185 86.310667 565 2368 3 chr3D.!!$R2 1803
4 TraesCS3B01G434900 chr3A 647498787 647500188 1401 True 496.500000 752 92.168500 378 1983 4 chr3A.!!$R2 1605
5 TraesCS3B01G434900 chr3A 647509060 647510242 1182 True 409.000000 479 84.843000 958 1880 2 chr3A.!!$R3 922
6 TraesCS3B01G434900 chr1B 637368518 637369305 787 False 367.000000 503 85.051000 947 1836 2 chr1B.!!$F1 889
7 TraesCS3B01G434900 chr1D 462298686 462300730 2044 False 346.000000 466 84.830000 966 1837 2 chr1D.!!$F4 871

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 6818 0.037326 TTCATCGTGAGCCAGTGACC 60.037 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 9356 1.112916 TCAGGTGGAAGCACGACTCA 61.113 55.0 0.0 0.0 36.26 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.662604 TTTTACCTCGTAATTCCAAGAGTTC 57.337 36.000 0.00 0.00 0.00 3.01
44 45 6.600882 TTACCTCGTAATTCCAAGAGTTCT 57.399 37.500 0.00 0.00 0.00 3.01
45 46 7.707624 TTACCTCGTAATTCCAAGAGTTCTA 57.292 36.000 0.00 0.00 0.00 2.10
46 47 6.210287 ACCTCGTAATTCCAAGAGTTCTAG 57.790 41.667 0.00 0.00 0.00 2.43
47 48 5.715753 ACCTCGTAATTCCAAGAGTTCTAGT 59.284 40.000 0.00 0.00 0.00 2.57
48 49 6.037098 CCTCGTAATTCCAAGAGTTCTAGTG 58.963 44.000 0.00 0.00 0.00 2.74
49 50 5.408356 TCGTAATTCCAAGAGTTCTAGTGC 58.592 41.667 0.00 0.00 0.00 4.40
50 51 5.185249 TCGTAATTCCAAGAGTTCTAGTGCT 59.815 40.000 0.00 0.00 0.00 4.40
51 52 6.376299 TCGTAATTCCAAGAGTTCTAGTGCTA 59.624 38.462 0.00 0.00 0.00 3.49
52 53 7.068348 TCGTAATTCCAAGAGTTCTAGTGCTAT 59.932 37.037 0.00 0.00 0.00 2.97
53 54 7.707035 CGTAATTCCAAGAGTTCTAGTGCTATT 59.293 37.037 0.00 0.00 0.00 1.73
54 55 9.384764 GTAATTCCAAGAGTTCTAGTGCTATTT 57.615 33.333 0.00 0.00 0.00 1.40
55 56 8.870075 AATTCCAAGAGTTCTAGTGCTATTTT 57.130 30.769 0.00 0.00 0.00 1.82
57 58 6.769512 TCCAAGAGTTCTAGTGCTATTTTGT 58.230 36.000 0.00 0.00 0.00 2.83
59 60 6.128172 CCAAGAGTTCTAGTGCTATTTTGTGG 60.128 42.308 0.00 0.00 0.00 4.17
61 62 4.651778 AGTTCTAGTGCTATTTTGTGGCA 58.348 39.130 0.00 0.00 42.55 4.92
62 63 5.070001 AGTTCTAGTGCTATTTTGTGGCAA 58.930 37.500 0.00 0.00 46.49 4.52
64 65 4.393834 TCTAGTGCTATTTTGTGGCAACA 58.606 39.130 0.00 0.00 46.49 3.33
77 78 1.039856 GGCAACAACATGAACCACCT 58.960 50.000 0.00 0.00 0.00 4.00
79 80 1.680735 GCAACAACATGAACCACCTGA 59.319 47.619 0.00 0.00 0.00 3.86
80 81 2.543653 GCAACAACATGAACCACCTGAC 60.544 50.000 0.00 0.00 0.00 3.51
82 83 1.134220 ACAACATGAACCACCTGACGT 60.134 47.619 0.00 0.00 0.00 4.34
85 86 3.695830 ACATGAACCACCTGACGTAAT 57.304 42.857 0.00 0.00 0.00 1.89
86 87 4.811969 ACATGAACCACCTGACGTAATA 57.188 40.909 0.00 0.00 0.00 0.98
87 88 5.353394 ACATGAACCACCTGACGTAATAT 57.647 39.130 0.00 0.00 0.00 1.28
88 89 5.741011 ACATGAACCACCTGACGTAATATT 58.259 37.500 0.00 0.00 0.00 1.28
89 90 5.815740 ACATGAACCACCTGACGTAATATTC 59.184 40.000 0.00 0.00 0.00 1.75
90 91 4.426416 TGAACCACCTGACGTAATATTCG 58.574 43.478 0.00 0.00 0.00 3.34
93 94 1.189446 CACCTGACGTAATATTCGCGC 59.811 52.381 0.00 0.00 0.00 6.86
94 95 1.202325 ACCTGACGTAATATTCGCGCA 60.202 47.619 8.75 0.00 0.00 6.09
95 96 1.189446 CCTGACGTAATATTCGCGCAC 59.811 52.381 8.75 0.00 0.00 5.34
96 97 1.189446 CTGACGTAATATTCGCGCACC 59.811 52.381 8.75 3.87 0.00 5.01
97 98 1.202325 TGACGTAATATTCGCGCACCT 60.202 47.619 8.75 0.00 0.00 4.00
98 99 2.033174 TGACGTAATATTCGCGCACCTA 59.967 45.455 8.75 0.00 0.00 3.08
99 100 3.044986 GACGTAATATTCGCGCACCTAA 58.955 45.455 8.75 0.00 0.00 2.69
100 101 2.791004 ACGTAATATTCGCGCACCTAAC 59.209 45.455 8.75 0.00 0.00 2.34
102 103 3.243410 CGTAATATTCGCGCACCTAACAA 59.757 43.478 8.75 0.00 0.00 2.83
103 104 4.259890 CGTAATATTCGCGCACCTAACAAA 60.260 41.667 8.75 0.00 0.00 2.83
105 106 2.542766 ATTCGCGCACCTAACAAATG 57.457 45.000 8.75 0.00 0.00 2.32
108 109 1.396648 TCGCGCACCTAACAAATGATG 59.603 47.619 8.75 0.00 0.00 3.07
109 110 1.130373 CGCGCACCTAACAAATGATGT 59.870 47.619 8.75 0.00 46.82 3.06
110 111 2.350192 CGCGCACCTAACAAATGATGTA 59.650 45.455 8.75 0.00 42.99 2.29
111 112 3.181515 CGCGCACCTAACAAATGATGTAA 60.182 43.478 8.75 0.00 42.99 2.41
112 113 4.095610 GCGCACCTAACAAATGATGTAAC 58.904 43.478 0.30 0.00 42.99 2.50
114 115 5.619086 GCGCACCTAACAAATGATGTAACTT 60.619 40.000 0.30 0.00 42.99 2.66
118 119 9.855021 GCACCTAACAAATGATGTAACTTTTAT 57.145 29.630 0.00 0.00 42.99 1.40
128 129 8.888579 ATGATGTAACTTTTATACTCCTTCCG 57.111 34.615 0.00 0.00 0.00 4.30
129 130 7.844009 TGATGTAACTTTTATACTCCTTCCGT 58.156 34.615 0.00 0.00 0.00 4.69
131 132 6.633856 TGTAACTTTTATACTCCTTCCGTCC 58.366 40.000 0.00 0.00 0.00 4.79
132 133 6.438425 TGTAACTTTTATACTCCTTCCGTCCT 59.562 38.462 0.00 0.00 0.00 3.85
133 134 7.615365 TGTAACTTTTATACTCCTTCCGTCCTA 59.385 37.037 0.00 0.00 0.00 2.94
134 135 7.486407 AACTTTTATACTCCTTCCGTCCTAA 57.514 36.000 0.00 0.00 0.00 2.69
135 136 7.486407 ACTTTTATACTCCTTCCGTCCTAAA 57.514 36.000 0.00 0.00 0.00 1.85
137 138 8.546322 ACTTTTATACTCCTTCCGTCCTAAAAT 58.454 33.333 0.00 0.00 0.00 1.82
180 181 7.813852 CTAGCATAGTGTCTAAAACGTTCTT 57.186 36.000 0.00 1.04 32.85 2.52
181 182 8.906636 CTAGCATAGTGTCTAAAACGTTCTTA 57.093 34.615 0.00 2.24 32.85 2.10
182 183 9.517609 CTAGCATAGTGTCTAAAACGTTCTTAT 57.482 33.333 0.00 0.00 32.85 1.73
197 198 8.480643 AACGTTCTTATATCTGAAACAGAAGG 57.519 34.615 5.57 0.00 44.04 3.46
198 199 7.837863 ACGTTCTTATATCTGAAACAGAAGGA 58.162 34.615 5.57 0.00 44.04 3.36
199 200 7.976734 ACGTTCTTATATCTGAAACAGAAGGAG 59.023 37.037 5.57 3.06 44.04 3.69
200 201 7.976734 CGTTCTTATATCTGAAACAGAAGGAGT 59.023 37.037 5.57 0.00 44.04 3.85
203 204 8.915036 TCTTATATCTGAAACAGAAGGAGTACC 58.085 37.037 5.57 0.00 44.04 3.34
204 205 3.936372 TCTGAAACAGAAGGAGTACCG 57.064 47.619 0.00 0.00 37.57 4.02
205 206 3.493334 TCTGAAACAGAAGGAGTACCGA 58.507 45.455 0.00 0.00 37.57 4.69
206 207 4.087182 TCTGAAACAGAAGGAGTACCGAT 58.913 43.478 0.00 0.00 37.57 4.18
208 209 5.011738 TCTGAAACAGAAGGAGTACCGATTT 59.988 40.000 0.00 0.00 37.57 2.17
209 210 5.617252 TGAAACAGAAGGAGTACCGATTTT 58.383 37.500 0.00 0.00 41.83 1.82
210 211 5.468746 TGAAACAGAAGGAGTACCGATTTTG 59.531 40.000 0.00 0.00 41.83 2.44
211 212 4.884668 ACAGAAGGAGTACCGATTTTGA 57.115 40.909 0.00 0.00 41.83 2.69
212 213 5.223449 ACAGAAGGAGTACCGATTTTGAA 57.777 39.130 0.00 0.00 41.83 2.69
213 214 5.805728 ACAGAAGGAGTACCGATTTTGAAT 58.194 37.500 0.00 0.00 41.83 2.57
214 215 6.942976 ACAGAAGGAGTACCGATTTTGAATA 58.057 36.000 0.00 0.00 41.83 1.75
215 216 7.391620 ACAGAAGGAGTACCGATTTTGAATAA 58.608 34.615 0.00 0.00 41.83 1.40
218 219 8.101419 AGAAGGAGTACCGATTTTGAATAAAGT 58.899 33.333 0.00 0.00 41.83 2.66
219 220 7.845066 AGGAGTACCGATTTTGAATAAAGTC 57.155 36.000 0.00 0.00 41.83 3.01
220 221 7.391620 AGGAGTACCGATTTTGAATAAAGTCA 58.608 34.615 0.00 0.00 41.83 3.41
221 222 7.333672 AGGAGTACCGATTTTGAATAAAGTCAC 59.666 37.037 0.00 0.00 41.83 3.67
222 223 7.057149 AGTACCGATTTTGAATAAAGTCACG 57.943 36.000 0.00 0.00 33.53 4.35
223 224 6.869913 AGTACCGATTTTGAATAAAGTCACGA 59.130 34.615 0.00 0.00 33.53 4.35
224 225 5.923665 ACCGATTTTGAATAAAGTCACGAC 58.076 37.500 0.00 0.00 33.53 4.34
225 226 5.106830 ACCGATTTTGAATAAAGTCACGACC 60.107 40.000 0.00 0.00 33.53 4.79
226 227 5.106869 CCGATTTTGAATAAAGTCACGACCA 60.107 40.000 0.00 0.00 33.53 4.02
227 228 6.403200 CCGATTTTGAATAAAGTCACGACCAT 60.403 38.462 0.00 0.00 33.53 3.55
228 229 6.465781 CGATTTTGAATAAAGTCACGACCATG 59.534 38.462 0.00 0.00 33.53 3.66
229 230 5.621197 TTTGAATAAAGTCACGACCATGG 57.379 39.130 11.19 11.19 0.00 3.66
230 231 4.280436 TGAATAAAGTCACGACCATGGT 57.720 40.909 19.89 19.89 0.00 3.55
231 232 4.647611 TGAATAAAGTCACGACCATGGTT 58.352 39.130 20.85 0.00 0.00 3.67
232 233 5.067273 TGAATAAAGTCACGACCATGGTTT 58.933 37.500 20.85 9.92 0.00 3.27
233 234 5.533154 TGAATAAAGTCACGACCATGGTTTT 59.467 36.000 20.85 16.18 0.00 2.43
234 235 6.039941 TGAATAAAGTCACGACCATGGTTTTT 59.960 34.615 20.85 14.26 0.00 1.94
235 236 3.982576 AAGTCACGACCATGGTTTTTC 57.017 42.857 20.85 4.89 0.00 2.29
237 238 2.158667 AGTCACGACCATGGTTTTTCCT 60.159 45.455 20.85 9.99 37.07 3.36
238 239 3.071892 AGTCACGACCATGGTTTTTCCTA 59.928 43.478 20.85 0.00 37.07 2.94
239 240 3.816523 GTCACGACCATGGTTTTTCCTAA 59.183 43.478 20.85 0.00 37.07 2.69
240 241 4.276431 GTCACGACCATGGTTTTTCCTAAA 59.724 41.667 20.85 0.00 37.07 1.85
241 242 4.888239 TCACGACCATGGTTTTTCCTAAAA 59.112 37.500 20.85 0.00 37.07 1.52
242 243 5.360144 TCACGACCATGGTTTTTCCTAAAAA 59.640 36.000 20.85 0.00 37.99 1.94
243 244 5.689961 CACGACCATGGTTTTTCCTAAAAAG 59.310 40.000 20.85 0.00 40.71 2.27
252 253 6.344572 GTTTTTCCTAAAAAGCACACCAAG 57.655 37.500 0.00 0.00 40.71 3.61
253 254 5.923733 TTTTCCTAAAAAGCACACCAAGA 57.076 34.783 0.00 0.00 30.90 3.02
254 255 5.514274 TTTCCTAAAAAGCACACCAAGAG 57.486 39.130 0.00 0.00 0.00 2.85
255 256 4.431416 TCCTAAAAAGCACACCAAGAGA 57.569 40.909 0.00 0.00 0.00 3.10
256 257 4.787551 TCCTAAAAAGCACACCAAGAGAA 58.212 39.130 0.00 0.00 0.00 2.87
257 258 5.385198 TCCTAAAAAGCACACCAAGAGAAT 58.615 37.500 0.00 0.00 0.00 2.40
258 259 5.833131 TCCTAAAAAGCACACCAAGAGAATT 59.167 36.000 0.00 0.00 0.00 2.17
259 260 7.001674 TCCTAAAAAGCACACCAAGAGAATTA 58.998 34.615 0.00 0.00 0.00 1.40
261 262 5.712152 AAAAGCACACCAAGAGAATTAGG 57.288 39.130 0.00 0.00 0.00 2.69
263 264 2.912956 AGCACACCAAGAGAATTAGGGA 59.087 45.455 0.00 0.00 0.00 4.20
264 265 3.054802 AGCACACCAAGAGAATTAGGGAG 60.055 47.826 0.00 0.00 0.00 4.30
265 266 3.055094 GCACACCAAGAGAATTAGGGAGA 60.055 47.826 0.00 0.00 0.00 3.71
268 269 5.130145 CACACCAAGAGAATTAGGGAGAGAT 59.870 44.000 0.00 0.00 0.00 2.75
269 270 6.325028 CACACCAAGAGAATTAGGGAGAGATA 59.675 42.308 0.00 0.00 0.00 1.98
270 271 6.903534 ACACCAAGAGAATTAGGGAGAGATAA 59.096 38.462 0.00 0.00 0.00 1.75
271 272 7.147637 ACACCAAGAGAATTAGGGAGAGATAAC 60.148 40.741 0.00 0.00 0.00 1.89
272 273 6.903534 ACCAAGAGAATTAGGGAGAGATAACA 59.096 38.462 0.00 0.00 0.00 2.41
274 275 7.713073 CCAAGAGAATTAGGGAGAGATAACAAC 59.287 40.741 0.00 0.00 0.00 3.32
275 276 8.482128 CAAGAGAATTAGGGAGAGATAACAACT 58.518 37.037 0.00 0.00 0.00 3.16
276 277 8.616799 AGAGAATTAGGGAGAGATAACAACTT 57.383 34.615 0.00 0.00 0.00 2.66
277 278 9.716556 AGAGAATTAGGGAGAGATAACAACTTA 57.283 33.333 0.00 0.00 0.00 2.24
278 279 9.752961 GAGAATTAGGGAGAGATAACAACTTAC 57.247 37.037 0.00 0.00 0.00 2.34
279 280 9.268282 AGAATTAGGGAGAGATAACAACTTACA 57.732 33.333 0.00 0.00 0.00 2.41
285 286 9.268282 AGGGAGAGATAACAACTTACATAAAGA 57.732 33.333 0.00 0.00 38.67 2.52
302 303 7.519002 ACATAAAGATTCTAACAAACTCACGC 58.481 34.615 0.00 0.00 0.00 5.34
303 304 7.172532 ACATAAAGATTCTAACAAACTCACGCA 59.827 33.333 0.00 0.00 0.00 5.24
305 306 4.377021 AGATTCTAACAAACTCACGCACA 58.623 39.130 0.00 0.00 0.00 4.57
306 307 3.936902 TTCTAACAAACTCACGCACAC 57.063 42.857 0.00 0.00 0.00 3.82
307 308 3.173668 TCTAACAAACTCACGCACACT 57.826 42.857 0.00 0.00 0.00 3.55
308 309 3.527533 TCTAACAAACTCACGCACACTT 58.472 40.909 0.00 0.00 0.00 3.16
309 310 3.936453 TCTAACAAACTCACGCACACTTT 59.064 39.130 0.00 0.00 0.00 2.66
310 311 5.110598 TCTAACAAACTCACGCACACTTTA 58.889 37.500 0.00 0.00 0.00 1.85
313 314 4.435425 ACAAACTCACGCACACTTTAGTA 58.565 39.130 0.00 0.00 0.00 1.82
314 315 4.269363 ACAAACTCACGCACACTTTAGTAC 59.731 41.667 0.00 0.00 0.00 2.73
315 316 4.317671 AACTCACGCACACTTTAGTACT 57.682 40.909 0.00 0.00 0.00 2.73
317 318 3.243336 CTCACGCACACTTTAGTACTCC 58.757 50.000 0.00 0.00 0.00 3.85
318 319 2.029649 TCACGCACACTTTAGTACTCCC 60.030 50.000 0.00 0.00 0.00 4.30
320 321 2.230750 ACGCACACTTTAGTACTCCCTC 59.769 50.000 0.00 0.00 0.00 4.30
322 323 2.416972 GCACACTTTAGTACTCCCTCCG 60.417 54.545 0.00 0.00 0.00 4.63
323 324 2.824341 CACACTTTAGTACTCCCTCCGT 59.176 50.000 0.00 0.00 0.00 4.69
324 325 3.087781 ACACTTTAGTACTCCCTCCGTC 58.912 50.000 0.00 0.00 0.00 4.79
327 328 3.525199 ACTTTAGTACTCCCTCCGTCCTA 59.475 47.826 0.00 0.00 0.00 2.94
328 329 4.018050 ACTTTAGTACTCCCTCCGTCCTAA 60.018 45.833 0.00 0.00 0.00 2.69
329 330 4.591321 TTAGTACTCCCTCCGTCCTAAA 57.409 45.455 0.00 0.00 0.00 1.85
331 332 3.991683 AGTACTCCCTCCGTCCTAAAAT 58.008 45.455 0.00 0.00 0.00 1.82
332 333 5.134725 AGTACTCCCTCCGTCCTAAAATA 57.865 43.478 0.00 0.00 0.00 1.40
333 334 5.522641 AGTACTCCCTCCGTCCTAAAATAA 58.477 41.667 0.00 0.00 0.00 1.40
334 335 5.597594 AGTACTCCCTCCGTCCTAAAATAAG 59.402 44.000 0.00 0.00 0.00 1.73
336 337 4.161754 ACTCCCTCCGTCCTAAAATAAGTG 59.838 45.833 0.00 0.00 0.00 3.16
337 338 4.098894 TCCCTCCGTCCTAAAATAAGTGT 58.901 43.478 0.00 0.00 0.00 3.55
338 339 4.533311 TCCCTCCGTCCTAAAATAAGTGTT 59.467 41.667 0.00 0.00 0.00 3.32
340 341 5.353400 CCCTCCGTCCTAAAATAAGTGTTTC 59.647 44.000 0.00 0.00 0.00 2.78
341 342 5.935789 CCTCCGTCCTAAAATAAGTGTTTCA 59.064 40.000 0.00 0.00 0.00 2.69
342 343 6.428771 CCTCCGTCCTAAAATAAGTGTTTCAA 59.571 38.462 0.00 0.00 0.00 2.69
344 345 6.993902 TCCGTCCTAAAATAAGTGTTTCAACT 59.006 34.615 0.00 0.00 0.00 3.16
345 346 7.499895 TCCGTCCTAAAATAAGTGTTTCAACTT 59.500 33.333 0.00 0.00 42.89 2.66
346 347 8.132995 CCGTCCTAAAATAAGTGTTTCAACTTT 58.867 33.333 0.00 0.00 40.77 2.66
347 348 8.953990 CGTCCTAAAATAAGTGTTTCAACTTTG 58.046 33.333 0.00 0.00 40.77 2.77
348 349 9.797556 GTCCTAAAATAAGTGTTTCAACTTTGT 57.202 29.630 0.00 0.00 40.77 2.83
368 369 8.562052 ACTTTGTACTAACTTTATTTTGGGACG 58.438 33.333 0.00 0.00 0.00 4.79
369 370 7.437793 TTGTACTAACTTTATTTTGGGACGG 57.562 36.000 0.00 0.00 0.00 4.79
370 371 6.767456 TGTACTAACTTTATTTTGGGACGGA 58.233 36.000 0.00 0.00 0.00 4.69
372 373 5.250982 ACTAACTTTATTTTGGGACGGAGG 58.749 41.667 0.00 0.00 0.00 4.30
373 374 3.081710 ACTTTATTTTGGGACGGAGGG 57.918 47.619 0.00 0.00 0.00 4.30
375 376 3.279434 CTTTATTTTGGGACGGAGGGAG 58.721 50.000 0.00 0.00 0.00 4.30
376 377 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
380 381 0.115745 TTGGGACGGAGGGAGTAGTT 59.884 55.000 0.00 0.00 0.00 2.24
388 389 4.091549 ACGGAGGGAGTAGTTGATTACAA 58.908 43.478 0.00 0.00 0.00 2.41
466 467 8.803397 AAACTTTGGATTTGTATACTACTCCC 57.197 34.615 17.03 7.69 0.00 4.30
467 468 7.750947 ACTTTGGATTTGTATACTACTCCCT 57.249 36.000 17.03 0.32 0.00 4.20
468 469 7.793036 ACTTTGGATTTGTATACTACTCCCTC 58.207 38.462 17.03 1.30 0.00 4.30
469 470 6.742559 TTGGATTTGTATACTACTCCCTCC 57.257 41.667 17.03 8.77 0.00 4.30
470 471 4.831155 TGGATTTGTATACTACTCCCTCCG 59.169 45.833 17.03 0.00 0.00 4.63
471 472 4.831710 GGATTTGTATACTACTCCCTCCGT 59.168 45.833 11.14 0.00 0.00 4.69
472 473 5.303845 GGATTTGTATACTACTCCCTCCGTT 59.696 44.000 11.14 0.00 0.00 4.44
473 474 5.841957 TTTGTATACTACTCCCTCCGTTC 57.158 43.478 4.17 0.00 0.00 3.95
474 475 3.470709 TGTATACTACTCCCTCCGTTCG 58.529 50.000 4.17 0.00 0.00 3.95
475 476 1.978454 ATACTACTCCCTCCGTTCGG 58.022 55.000 4.74 4.74 0.00 4.30
476 477 0.911769 TACTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
481 482 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
482 483 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
484 485 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
485 486 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
486 487 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
487 488 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
488 489 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
489 490 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
490 491 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
491 492 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
493 494 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
494 495 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
496 497 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
499 500 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
501 502 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
503 504 5.745227 ACTTGTCTCGGAAATGGATGTATT 58.255 37.500 0.00 0.00 0.00 1.89
504 505 6.180472 ACTTGTCTCGGAAATGGATGTATTT 58.820 36.000 0.00 0.00 33.19 1.40
505 506 7.335627 ACTTGTCTCGGAAATGGATGTATTTA 58.664 34.615 0.00 0.00 30.78 1.40
506 507 7.495934 ACTTGTCTCGGAAATGGATGTATTTAG 59.504 37.037 0.00 0.00 30.78 1.85
510 511 7.711339 GTCTCGGAAATGGATGTATTTAGAACT 59.289 37.037 0.00 0.00 30.78 3.01
511 512 8.920174 TCTCGGAAATGGATGTATTTAGAACTA 58.080 33.333 0.00 0.00 30.78 2.24
512 513 9.542462 CTCGGAAATGGATGTATTTAGAACTAA 57.458 33.333 0.00 0.00 30.78 2.24
513 514 9.893634 TCGGAAATGGATGTATTTAGAACTAAA 57.106 29.630 9.03 9.03 39.12 1.85
539 540 8.939201 ATAATCTAGATACATCCATTTCTGCG 57.061 34.615 5.46 0.00 0.00 5.18
540 541 6.596309 ATCTAGATACATCCATTTCTGCGA 57.404 37.500 2.53 0.00 0.00 5.10
541 542 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
544 545 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
545 546 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
547 548 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
548 549 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
549 550 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
551 552 5.938322 TCCATTTCTGCGACAAGTAATTTC 58.062 37.500 0.00 0.00 0.00 2.17
552 553 4.788100 CCATTTCTGCGACAAGTAATTTCG 59.212 41.667 0.00 4.05 35.82 3.46
554 555 5.660629 TTTCTGCGACAAGTAATTTCGAA 57.339 34.783 0.00 0.00 34.62 3.71
555 556 4.640805 TCTGCGACAAGTAATTTCGAAC 57.359 40.909 0.00 0.00 34.62 3.95
556 557 3.120616 TCTGCGACAAGTAATTTCGAACG 59.879 43.478 0.00 0.00 34.62 3.95
558 559 2.409378 GCGACAAGTAATTTCGAACGGA 59.591 45.455 0.00 0.00 34.62 4.69
559 560 3.481467 GCGACAAGTAATTTCGAACGGAG 60.481 47.826 0.00 0.00 34.62 4.63
560 561 3.060363 CGACAAGTAATTTCGAACGGAGG 59.940 47.826 0.00 0.00 34.62 4.30
561 562 3.332034 ACAAGTAATTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
564 565 2.830321 AGTAATTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
565 566 4.019174 AGTAATTTCGAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
566 567 2.955477 ATTTCGAACGGAGGGAGTAC 57.045 50.000 0.00 0.00 0.00 2.73
592 6677 4.901197 TTGCAAGGATAAGTCAGTGGTA 57.099 40.909 0.00 0.00 0.00 3.25
603 6688 7.148457 GGATAAGTCAGTGGTAAAAGCTGTAAC 60.148 40.741 0.00 0.00 0.00 2.50
673 6763 1.506891 CGTTGCATGCACGTACACG 60.507 57.895 22.58 22.74 46.33 4.49
693 6783 2.352651 CGTTGTCAATCATCGCCAATCT 59.647 45.455 0.00 0.00 33.54 2.40
694 6784 3.181507 CGTTGTCAATCATCGCCAATCTT 60.182 43.478 0.00 0.00 33.54 2.40
707 6803 4.042062 TCGCCAATCTTATCTCCCATTCAT 59.958 41.667 0.00 0.00 0.00 2.57
713 6809 5.459536 TCTTATCTCCCATTCATCGTGAG 57.540 43.478 0.00 0.00 0.00 3.51
719 6815 1.012086 CCATTCATCGTGAGCCAGTG 58.988 55.000 0.00 0.00 0.00 3.66
720 6816 1.405933 CCATTCATCGTGAGCCAGTGA 60.406 52.381 0.00 0.00 0.00 3.41
721 6817 1.662629 CATTCATCGTGAGCCAGTGAC 59.337 52.381 0.00 0.00 0.00 3.67
722 6818 0.037326 TTCATCGTGAGCCAGTGACC 60.037 55.000 0.00 0.00 0.00 4.02
875 6976 2.517875 TCCCTAGTCCCTACGCGC 60.518 66.667 5.73 0.00 0.00 6.86
891 6992 3.378339 ACGCGCCTTGTCTTACATATAC 58.622 45.455 5.73 0.00 0.00 1.47
892 6993 3.067742 ACGCGCCTTGTCTTACATATACT 59.932 43.478 5.73 0.00 0.00 2.12
893 6994 3.669122 CGCGCCTTGTCTTACATATACTC 59.331 47.826 0.00 0.00 0.00 2.59
894 6995 4.556898 CGCGCCTTGTCTTACATATACTCT 60.557 45.833 0.00 0.00 0.00 3.24
895 6996 5.334646 CGCGCCTTGTCTTACATATACTCTA 60.335 44.000 0.00 0.00 0.00 2.43
936 7037 2.946947 GAGTATCAGAACACGCGCACG 61.947 57.143 5.73 0.00 39.67 5.34
939 7040 4.075910 CAGAACACGCGCACGCAT 62.076 61.111 16.04 0.00 45.53 4.73
953 7076 2.752121 CACGCATGCACATAGAGAGAT 58.248 47.619 19.57 0.00 0.00 2.75
954 7077 2.730404 CACGCATGCACATAGAGAGATC 59.270 50.000 19.57 0.00 0.00 2.75
955 7078 2.627221 ACGCATGCACATAGAGAGATCT 59.373 45.455 19.57 0.00 0.00 2.75
961 7084 6.072008 GCATGCACATAGAGAGATCTAGAGAA 60.072 42.308 14.21 0.00 0.00 2.87
965 7088 7.228507 TGCACATAGAGAGATCTAGAGAAAGAC 59.771 40.741 0.00 0.00 0.00 3.01
1132 7256 3.626670 TCAGCTAGCTTAGGTACGAAGAC 59.373 47.826 16.46 2.73 43.82 3.01
1215 7359 2.031163 GTGGAGAACAGCCACGCT 59.969 61.111 0.00 0.00 45.50 5.07
1425 7938 2.810650 CTCGACATACTGGTAAGTGGC 58.189 52.381 0.00 0.00 37.19 5.01
1430 7943 2.833338 ACATACTGGTAAGTGGCCGTAA 59.167 45.455 0.00 0.00 37.19 3.18
1435 7948 0.322648 GGTAAGTGGCCGTAACCAGT 59.677 55.000 10.56 0.00 45.62 4.00
1439 7952 1.345063 AGTGGCCGTAACCAGTAACT 58.655 50.000 0.00 0.00 41.74 2.24
1440 7953 1.695788 AGTGGCCGTAACCAGTAACTT 59.304 47.619 0.00 0.00 41.74 2.66
1441 7954 2.071540 GTGGCCGTAACCAGTAACTTC 58.928 52.381 0.00 0.00 41.46 3.01
1443 7956 1.067635 GGCCGTAACCAGTAACTTCGA 60.068 52.381 0.00 0.00 0.00 3.71
1444 7957 2.257034 GCCGTAACCAGTAACTTCGAG 58.743 52.381 0.00 0.00 0.00 4.04
1445 7958 2.872370 CCGTAACCAGTAACTTCGAGG 58.128 52.381 0.00 0.00 0.00 4.63
1447 7960 3.496155 CGTAACCAGTAACTTCGAGGAC 58.504 50.000 0.00 0.00 0.00 3.85
1449 7962 4.320788 CGTAACCAGTAACTTCGAGGACTT 60.321 45.833 0.00 0.00 0.00 3.01
1450 7963 3.662247 ACCAGTAACTTCGAGGACTTG 57.338 47.619 0.00 0.00 0.00 3.16
1451 7964 2.299297 ACCAGTAACTTCGAGGACTTGG 59.701 50.000 0.00 6.11 0.00 3.61
1453 7966 3.576648 CAGTAACTTCGAGGACTTGGAC 58.423 50.000 0.00 0.00 0.00 4.02
1454 7967 3.256136 CAGTAACTTCGAGGACTTGGACT 59.744 47.826 0.00 0.00 0.00 3.85
1690 9356 0.110486 ACCTCATGGCGACCAACTTT 59.890 50.000 2.68 0.00 36.95 2.66
1784 9450 1.954382 TCGTCAACATATCCTCCCTCG 59.046 52.381 0.00 0.00 0.00 4.63
1823 9489 0.451783 CGGGCCTCACAATTTACAGC 59.548 55.000 0.84 0.00 0.00 4.40
1934 9610 5.880054 ATGACGGTTTCAGAAAATAGTGG 57.120 39.130 0.00 0.00 37.77 4.00
2011 9695 9.534565 AATACTAGCTAATATGTCTGTGTGTTG 57.465 33.333 0.00 0.00 0.00 3.33
2014 9698 5.003160 AGCTAATATGTCTGTGTGTTGCAA 58.997 37.500 0.00 0.00 0.00 4.08
2018 9702 2.049888 TGTCTGTGTGTTGCAATGGA 57.950 45.000 0.59 0.00 0.00 3.41
2052 9737 8.618702 ATCAAGTTATGCCAAGATGAGATAAG 57.381 34.615 0.00 0.00 0.00 1.73
2170 9856 7.226325 GGTCTCATCATGACTTGATTTCCTAAG 59.774 40.741 0.00 0.00 42.62 2.18
2180 9866 3.950397 TGATTTCCTAAGACGCCACAAT 58.050 40.909 0.00 0.00 0.00 2.71
2181 9867 3.689161 TGATTTCCTAAGACGCCACAATG 59.311 43.478 0.00 0.00 0.00 2.82
2218 9904 0.669932 GCAAAATGCATTGGCGACCA 60.670 50.000 13.82 0.00 44.26 4.02
2219 9905 2.008045 GCAAAATGCATTGGCGACCAT 61.008 47.619 13.82 0.00 44.26 3.55
2220 9906 1.661617 CAAAATGCATTGGCGACCATG 59.338 47.619 13.82 0.00 45.35 3.66
2221 9907 0.460635 AAATGCATTGGCGACCATGC 60.461 50.000 20.02 20.02 45.35 4.06
2242 9929 6.484364 TGCCATAACTAGACTGATGAATGA 57.516 37.500 0.00 0.00 0.00 2.57
2250 9937 7.180322 ACTAGACTGATGAATGATGTGTCTT 57.820 36.000 0.00 0.00 35.36 3.01
2252 9939 4.634883 AGACTGATGAATGATGTGTCTTGC 59.365 41.667 0.00 0.00 30.33 4.01
2253 9940 3.693085 ACTGATGAATGATGTGTCTTGCC 59.307 43.478 0.00 0.00 0.00 4.52
2263 9950 1.270839 TGTGTCTTGCCTTGACCTAGC 60.271 52.381 0.00 0.00 33.83 3.42
2272 9964 1.725164 CCTTGACCTAGCGTCGTTTTC 59.275 52.381 0.00 0.00 45.23 2.29
2323 10015 9.726438 AGAATAAACATAGTTATGTATGGAGGC 57.274 33.333 5.28 0.00 45.55 4.70
2334 10028 8.609483 AGTTATGTATGGAGGCAAATCTGATAT 58.391 33.333 0.00 0.00 0.00 1.63
2368 10062 8.667987 TTTCATATAGCTTGCAAAAACTAACG 57.332 30.769 0.00 0.00 0.00 3.18
2369 10063 6.255215 TCATATAGCTTGCAAAAACTAACGC 58.745 36.000 0.00 0.00 0.00 4.84
2370 10064 4.766404 ATAGCTTGCAAAAACTAACGCT 57.234 36.364 9.99 9.99 0.00 5.07
2371 10065 2.731217 AGCTTGCAAAAACTAACGCTG 58.269 42.857 0.00 0.00 0.00 5.18
2372 10066 2.099098 AGCTTGCAAAAACTAACGCTGT 59.901 40.909 0.00 0.00 0.00 4.40
2373 10067 2.216263 GCTTGCAAAAACTAACGCTGTG 59.784 45.455 0.00 0.00 0.00 3.66
2374 10068 3.434637 CTTGCAAAAACTAACGCTGTGT 58.565 40.909 0.00 0.00 0.00 3.72
2375 10069 3.059634 TGCAAAAACTAACGCTGTGTC 57.940 42.857 0.00 0.00 0.00 3.67
2376 10070 2.420372 TGCAAAAACTAACGCTGTGTCA 59.580 40.909 0.00 0.00 0.00 3.58
2377 10071 3.119814 TGCAAAAACTAACGCTGTGTCAA 60.120 39.130 0.00 0.00 0.00 3.18
2378 10072 3.854809 GCAAAAACTAACGCTGTGTCAAA 59.145 39.130 0.00 0.00 0.00 2.69
2379 10073 4.502645 GCAAAAACTAACGCTGTGTCAAAT 59.497 37.500 0.00 0.00 0.00 2.32
2380 10074 5.005299 GCAAAAACTAACGCTGTGTCAAATT 59.995 36.000 0.00 0.00 0.00 1.82
2381 10075 6.454981 GCAAAAACTAACGCTGTGTCAAATTT 60.455 34.615 0.00 0.00 0.00 1.82
2382 10076 7.452231 CAAAAACTAACGCTGTGTCAAATTTT 58.548 30.769 0.00 0.00 0.00 1.82
2383 10077 7.589574 AAAACTAACGCTGTGTCAAATTTTT 57.410 28.000 0.00 0.00 0.00 1.94
2384 10078 6.567769 AACTAACGCTGTGTCAAATTTTTG 57.432 33.333 0.00 0.00 39.48 2.44
2385 10079 5.040635 ACTAACGCTGTGTCAAATTTTTGG 58.959 37.500 3.38 0.00 38.66 3.28
2386 10080 2.820330 ACGCTGTGTCAAATTTTTGGG 58.180 42.857 3.38 0.00 38.66 4.12
2387 10081 2.134346 CGCTGTGTCAAATTTTTGGGG 58.866 47.619 3.38 0.00 38.66 4.96
2388 10082 2.493035 GCTGTGTCAAATTTTTGGGGG 58.507 47.619 3.38 0.00 38.66 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 7.935210 AGAACTCTTGGAATTACGAGGTAAAAA 59.065 33.333 5.01 0.00 31.56 1.94
19 20 7.447594 AGAACTCTTGGAATTACGAGGTAAAA 58.552 34.615 5.01 0.00 31.56 1.52
20 21 7.001099 AGAACTCTTGGAATTACGAGGTAAA 57.999 36.000 5.01 0.00 31.56 2.01
21 22 6.600882 AGAACTCTTGGAATTACGAGGTAA 57.399 37.500 5.01 0.00 32.36 2.85
22 23 6.888632 ACTAGAACTCTTGGAATTACGAGGTA 59.111 38.462 5.01 0.00 0.00 3.08
24 25 6.037098 CACTAGAACTCTTGGAATTACGAGG 58.963 44.000 5.01 0.00 0.00 4.63
25 26 5.517054 GCACTAGAACTCTTGGAATTACGAG 59.483 44.000 0.00 0.00 0.00 4.18
26 27 5.185249 AGCACTAGAACTCTTGGAATTACGA 59.815 40.000 0.00 0.00 0.00 3.43
27 28 5.411781 AGCACTAGAACTCTTGGAATTACG 58.588 41.667 0.00 0.00 0.00 3.18
28 29 8.950208 AATAGCACTAGAACTCTTGGAATTAC 57.050 34.615 0.00 0.00 0.00 1.89
29 30 9.959721 AAAATAGCACTAGAACTCTTGGAATTA 57.040 29.630 0.00 0.00 0.00 1.40
30 31 8.734386 CAAAATAGCACTAGAACTCTTGGAATT 58.266 33.333 0.00 0.00 0.00 2.17
31 32 7.885399 ACAAAATAGCACTAGAACTCTTGGAAT 59.115 33.333 0.00 0.00 0.00 3.01
32 33 7.173218 CACAAAATAGCACTAGAACTCTTGGAA 59.827 37.037 0.00 0.00 0.00 3.53
33 34 6.650807 CACAAAATAGCACTAGAACTCTTGGA 59.349 38.462 0.00 0.00 0.00 3.53
34 35 6.128172 CCACAAAATAGCACTAGAACTCTTGG 60.128 42.308 0.00 0.00 0.00 3.61
35 36 6.621596 GCCACAAAATAGCACTAGAACTCTTG 60.622 42.308 0.00 1.60 0.00 3.02
36 37 5.412904 GCCACAAAATAGCACTAGAACTCTT 59.587 40.000 0.00 0.00 0.00 2.85
37 38 4.938226 GCCACAAAATAGCACTAGAACTCT 59.062 41.667 0.00 0.00 0.00 3.24
38 39 4.695455 TGCCACAAAATAGCACTAGAACTC 59.305 41.667 0.00 0.00 0.00 3.01
39 40 4.651778 TGCCACAAAATAGCACTAGAACT 58.348 39.130 0.00 0.00 0.00 3.01
42 43 4.393834 TGTTGCCACAAAATAGCACTAGA 58.606 39.130 0.00 0.00 35.96 2.43
43 44 4.764679 TGTTGCCACAAAATAGCACTAG 57.235 40.909 0.00 0.00 35.96 2.57
44 45 4.339530 TGTTGTTGCCACAAAATAGCACTA 59.660 37.500 4.72 0.00 44.72 2.74
45 46 3.131933 TGTTGTTGCCACAAAATAGCACT 59.868 39.130 4.72 0.00 44.72 4.40
46 47 3.452474 TGTTGTTGCCACAAAATAGCAC 58.548 40.909 4.72 0.00 44.72 4.40
47 48 3.808466 TGTTGTTGCCACAAAATAGCA 57.192 38.095 4.72 0.00 44.72 3.49
48 49 4.305769 TCATGTTGTTGCCACAAAATAGC 58.694 39.130 4.72 0.00 44.72 2.97
49 50 5.177327 GGTTCATGTTGTTGCCACAAAATAG 59.823 40.000 4.72 1.75 44.72 1.73
50 51 5.053145 GGTTCATGTTGTTGCCACAAAATA 58.947 37.500 4.72 0.00 44.72 1.40
51 52 3.876320 GGTTCATGTTGTTGCCACAAAAT 59.124 39.130 4.72 2.47 44.72 1.82
52 53 3.265791 GGTTCATGTTGTTGCCACAAAA 58.734 40.909 4.72 0.00 44.72 2.44
53 54 2.234661 TGGTTCATGTTGTTGCCACAAA 59.765 40.909 4.72 0.00 44.72 2.83
54 55 1.827344 TGGTTCATGTTGTTGCCACAA 59.173 42.857 0.00 0.00 40.82 3.33
55 56 1.135915 GTGGTTCATGTTGTTGCCACA 59.864 47.619 6.64 0.00 44.00 4.17
57 58 0.749649 GGTGGTTCATGTTGTTGCCA 59.250 50.000 0.00 0.00 0.00 4.92
59 60 1.680735 TCAGGTGGTTCATGTTGTTGC 59.319 47.619 0.00 0.00 0.00 4.17
61 62 1.946768 CGTCAGGTGGTTCATGTTGTT 59.053 47.619 0.00 0.00 0.00 2.83
62 63 1.134220 ACGTCAGGTGGTTCATGTTGT 60.134 47.619 0.00 0.00 0.00 3.32
64 65 3.478857 TTACGTCAGGTGGTTCATGTT 57.521 42.857 0.00 0.00 0.00 2.71
65 66 3.695830 ATTACGTCAGGTGGTTCATGT 57.304 42.857 0.00 0.00 0.00 3.21
66 67 5.051039 CGAATATTACGTCAGGTGGTTCATG 60.051 44.000 0.00 0.00 0.00 3.07
67 68 5.047847 CGAATATTACGTCAGGTGGTTCAT 58.952 41.667 0.00 0.00 0.00 2.57
68 69 4.426416 CGAATATTACGTCAGGTGGTTCA 58.574 43.478 0.00 0.00 0.00 3.18
69 70 3.244579 GCGAATATTACGTCAGGTGGTTC 59.755 47.826 0.00 0.00 0.00 3.62
70 71 3.192466 GCGAATATTACGTCAGGTGGTT 58.808 45.455 0.00 0.00 0.00 3.67
74 75 1.202325 TGCGCGAATATTACGTCAGGT 60.202 47.619 12.10 0.00 0.00 4.00
75 76 1.189446 GTGCGCGAATATTACGTCAGG 59.811 52.381 12.10 1.36 0.00 3.86
77 78 1.202203 GGTGCGCGAATATTACGTCA 58.798 50.000 12.10 7.44 0.00 4.35
79 80 2.780065 TAGGTGCGCGAATATTACGT 57.220 45.000 12.10 0.00 0.00 3.57
80 81 2.790448 TGTTAGGTGCGCGAATATTACG 59.210 45.455 12.10 6.09 0.00 3.18
82 83 5.524281 TCATTTGTTAGGTGCGCGAATATTA 59.476 36.000 12.10 0.00 0.00 0.98
85 86 3.263261 TCATTTGTTAGGTGCGCGAATA 58.737 40.909 12.10 0.00 0.00 1.75
86 87 2.080693 TCATTTGTTAGGTGCGCGAAT 58.919 42.857 12.10 0.00 0.00 3.34
87 88 1.514003 TCATTTGTTAGGTGCGCGAA 58.486 45.000 12.10 0.00 0.00 4.70
88 89 1.396648 CATCATTTGTTAGGTGCGCGA 59.603 47.619 12.10 0.00 0.00 5.87
89 90 1.130373 ACATCATTTGTTAGGTGCGCG 59.870 47.619 0.00 0.00 33.74 6.86
90 91 2.919666 ACATCATTTGTTAGGTGCGC 57.080 45.000 0.00 0.00 33.74 6.09
102 103 9.326413 CGGAAGGAGTATAAAAGTTACATCATT 57.674 33.333 0.00 0.00 0.00 2.57
103 104 8.483758 ACGGAAGGAGTATAAAAGTTACATCAT 58.516 33.333 0.00 0.00 0.00 2.45
105 106 7.437565 GGACGGAAGGAGTATAAAAGTTACATC 59.562 40.741 0.00 0.00 0.00 3.06
108 109 6.871844 AGGACGGAAGGAGTATAAAAGTTAC 58.128 40.000 0.00 0.00 0.00 2.50
109 110 8.593945 TTAGGACGGAAGGAGTATAAAAGTTA 57.406 34.615 0.00 0.00 0.00 2.24
110 111 7.486407 TTAGGACGGAAGGAGTATAAAAGTT 57.514 36.000 0.00 0.00 0.00 2.66
111 112 7.486407 TTTAGGACGGAAGGAGTATAAAAGT 57.514 36.000 0.00 0.00 0.00 2.66
112 113 8.959705 ATTTTAGGACGGAAGGAGTATAAAAG 57.040 34.615 0.00 0.00 31.94 2.27
119 120 9.916360 ATTTTTATATTTTAGGACGGAAGGAGT 57.084 29.630 0.00 0.00 0.00 3.85
121 122 9.689501 ACATTTTTATATTTTAGGACGGAAGGA 57.310 29.630 0.00 0.00 0.00 3.36
155 156 6.921914 AGAACGTTTTAGACACTATGCTAGT 58.078 36.000 0.46 0.00 40.28 2.57
156 157 7.813852 AAGAACGTTTTAGACACTATGCTAG 57.186 36.000 0.46 0.00 0.00 3.42
171 172 8.936864 CCTTCTGTTTCAGATATAAGAACGTTT 58.063 33.333 0.46 0.00 40.39 3.60
173 174 7.837863 TCCTTCTGTTTCAGATATAAGAACGT 58.162 34.615 0.24 0.00 40.39 3.99
174 175 7.976734 ACTCCTTCTGTTTCAGATATAAGAACG 59.023 37.037 0.24 0.00 40.39 3.95
177 178 8.915036 GGTACTCCTTCTGTTTCAGATATAAGA 58.085 37.037 0.24 0.00 40.39 2.10
178 179 7.863375 CGGTACTCCTTCTGTTTCAGATATAAG 59.137 40.741 0.24 0.00 40.39 1.73
180 181 7.058525 TCGGTACTCCTTCTGTTTCAGATATA 58.941 38.462 0.24 0.00 40.39 0.86
181 182 5.892119 TCGGTACTCCTTCTGTTTCAGATAT 59.108 40.000 0.24 0.00 40.39 1.63
182 183 5.258841 TCGGTACTCCTTCTGTTTCAGATA 58.741 41.667 0.24 0.00 40.39 1.98
183 184 4.087182 TCGGTACTCCTTCTGTTTCAGAT 58.913 43.478 0.24 0.00 40.39 2.90
184 185 3.493334 TCGGTACTCCTTCTGTTTCAGA 58.507 45.455 0.00 0.00 38.87 3.27
185 186 3.936372 TCGGTACTCCTTCTGTTTCAG 57.064 47.619 0.00 0.00 0.00 3.02
186 187 4.884668 AATCGGTACTCCTTCTGTTTCA 57.115 40.909 0.00 0.00 0.00 2.69
188 189 5.617252 TCAAAATCGGTACTCCTTCTGTTT 58.383 37.500 0.00 0.00 0.00 2.83
189 190 5.223449 TCAAAATCGGTACTCCTTCTGTT 57.777 39.130 0.00 0.00 0.00 3.16
190 191 4.884668 TCAAAATCGGTACTCCTTCTGT 57.115 40.909 0.00 0.00 0.00 3.41
191 192 7.843490 TTATTCAAAATCGGTACTCCTTCTG 57.157 36.000 0.00 0.00 0.00 3.02
196 197 7.461918 GTGACTTTATTCAAAATCGGTACTCC 58.538 38.462 0.00 0.00 0.00 3.85
197 198 7.062605 TCGTGACTTTATTCAAAATCGGTACTC 59.937 37.037 0.00 0.00 0.00 2.59
198 199 6.869913 TCGTGACTTTATTCAAAATCGGTACT 59.130 34.615 0.00 0.00 0.00 2.73
199 200 6.952083 GTCGTGACTTTATTCAAAATCGGTAC 59.048 38.462 0.00 0.00 0.00 3.34
200 201 6.091169 GGTCGTGACTTTATTCAAAATCGGTA 59.909 38.462 0.00 0.00 0.00 4.02
203 204 5.922546 TGGTCGTGACTTTATTCAAAATCG 58.077 37.500 0.00 0.00 0.00 3.34
204 205 6.747280 CCATGGTCGTGACTTTATTCAAAATC 59.253 38.462 2.57 0.00 0.00 2.17
205 206 6.208599 ACCATGGTCGTGACTTTATTCAAAAT 59.791 34.615 13.00 0.00 0.00 1.82
206 207 5.533154 ACCATGGTCGTGACTTTATTCAAAA 59.467 36.000 13.00 0.00 0.00 2.44
208 209 4.647611 ACCATGGTCGTGACTTTATTCAA 58.352 39.130 13.00 0.00 0.00 2.69
209 210 4.280436 ACCATGGTCGTGACTTTATTCA 57.720 40.909 13.00 0.00 0.00 2.57
210 211 5.622770 AAACCATGGTCGTGACTTTATTC 57.377 39.130 20.07 0.00 0.00 1.75
211 212 6.399639 AAAAACCATGGTCGTGACTTTATT 57.600 33.333 20.07 1.05 0.00 1.40
212 213 5.048294 GGAAAAACCATGGTCGTGACTTTAT 60.048 40.000 20.07 5.08 38.79 1.40
213 214 4.276431 GGAAAAACCATGGTCGTGACTTTA 59.724 41.667 20.07 0.00 38.79 1.85
214 215 3.067601 GGAAAAACCATGGTCGTGACTTT 59.932 43.478 20.07 11.04 38.79 2.66
215 216 2.621526 GGAAAAACCATGGTCGTGACTT 59.378 45.455 20.07 4.40 38.79 3.01
218 219 2.649531 AGGAAAAACCATGGTCGTGA 57.350 45.000 20.07 0.00 42.04 4.35
219 220 4.839668 TTTAGGAAAAACCATGGTCGTG 57.160 40.909 20.07 0.00 42.04 4.35
220 221 5.737922 GCTTTTTAGGAAAAACCATGGTCGT 60.738 40.000 20.07 9.75 42.04 4.34
221 222 4.684242 GCTTTTTAGGAAAAACCATGGTCG 59.316 41.667 20.07 0.00 42.04 4.79
222 223 5.465390 GTGCTTTTTAGGAAAAACCATGGTC 59.535 40.000 20.07 5.16 42.04 4.02
223 224 5.104735 TGTGCTTTTTAGGAAAAACCATGGT 60.105 36.000 13.00 13.00 42.04 3.55
224 225 5.236263 GTGTGCTTTTTAGGAAAAACCATGG 59.764 40.000 11.19 11.19 42.04 3.66
225 226 5.236263 GGTGTGCTTTTTAGGAAAAACCATG 59.764 40.000 0.00 0.00 42.04 3.66
226 227 5.104735 TGGTGTGCTTTTTAGGAAAAACCAT 60.105 36.000 2.51 0.00 37.16 3.55
227 228 4.223032 TGGTGTGCTTTTTAGGAAAAACCA 59.777 37.500 2.51 2.51 38.57 3.67
228 229 4.760878 TGGTGTGCTTTTTAGGAAAAACC 58.239 39.130 0.00 0.00 35.57 3.27
229 230 6.103330 TCTTGGTGTGCTTTTTAGGAAAAAC 58.897 36.000 0.00 0.00 35.57 2.43
230 231 6.153680 TCTCTTGGTGTGCTTTTTAGGAAAAA 59.846 34.615 0.00 0.00 37.99 1.94
231 232 5.654650 TCTCTTGGTGTGCTTTTTAGGAAAA 59.345 36.000 0.00 0.00 33.86 2.29
232 233 5.197451 TCTCTTGGTGTGCTTTTTAGGAAA 58.803 37.500 0.00 0.00 0.00 3.13
233 234 4.787551 TCTCTTGGTGTGCTTTTTAGGAA 58.212 39.130 0.00 0.00 0.00 3.36
234 235 4.431416 TCTCTTGGTGTGCTTTTTAGGA 57.569 40.909 0.00 0.00 0.00 2.94
235 236 5.712152 ATTCTCTTGGTGTGCTTTTTAGG 57.288 39.130 0.00 0.00 0.00 2.69
237 238 6.208599 CCCTAATTCTCTTGGTGTGCTTTTTA 59.791 38.462 0.00 0.00 0.00 1.52
238 239 5.011023 CCCTAATTCTCTTGGTGTGCTTTTT 59.989 40.000 0.00 0.00 0.00 1.94
239 240 4.524328 CCCTAATTCTCTTGGTGTGCTTTT 59.476 41.667 0.00 0.00 0.00 2.27
240 241 4.082125 CCCTAATTCTCTTGGTGTGCTTT 58.918 43.478 0.00 0.00 0.00 3.51
241 242 3.330701 TCCCTAATTCTCTTGGTGTGCTT 59.669 43.478 0.00 0.00 0.00 3.91
242 243 2.912956 TCCCTAATTCTCTTGGTGTGCT 59.087 45.455 0.00 0.00 0.00 4.40
243 244 3.055094 TCTCCCTAATTCTCTTGGTGTGC 60.055 47.826 0.00 0.00 0.00 4.57
247 248 6.903534 TGTTATCTCTCCCTAATTCTCTTGGT 59.096 38.462 0.00 0.00 0.00 3.67
248 249 7.366847 TGTTATCTCTCCCTAATTCTCTTGG 57.633 40.000 0.00 0.00 0.00 3.61
249 250 8.482128 AGTTGTTATCTCTCCCTAATTCTCTTG 58.518 37.037 0.00 0.00 0.00 3.02
250 251 8.616799 AGTTGTTATCTCTCCCTAATTCTCTT 57.383 34.615 0.00 0.00 0.00 2.85
251 252 8.616799 AAGTTGTTATCTCTCCCTAATTCTCT 57.383 34.615 0.00 0.00 0.00 3.10
252 253 9.752961 GTAAGTTGTTATCTCTCCCTAATTCTC 57.247 37.037 0.00 0.00 0.00 2.87
253 254 9.268282 TGTAAGTTGTTATCTCTCCCTAATTCT 57.732 33.333 0.00 0.00 0.00 2.40
259 260 9.268282 TCTTTATGTAAGTTGTTATCTCTCCCT 57.732 33.333 0.00 0.00 35.28 4.20
276 277 8.653338 GCGTGAGTTTGTTAGAATCTTTATGTA 58.347 33.333 0.00 0.00 0.00 2.29
277 278 7.172532 TGCGTGAGTTTGTTAGAATCTTTATGT 59.827 33.333 0.00 0.00 0.00 2.29
278 279 7.478667 GTGCGTGAGTTTGTTAGAATCTTTATG 59.521 37.037 0.00 0.00 0.00 1.90
279 280 7.172532 TGTGCGTGAGTTTGTTAGAATCTTTAT 59.827 33.333 0.00 0.00 0.00 1.40
280 281 6.480651 TGTGCGTGAGTTTGTTAGAATCTTTA 59.519 34.615 0.00 0.00 0.00 1.85
281 282 5.295787 TGTGCGTGAGTTTGTTAGAATCTTT 59.704 36.000 0.00 0.00 0.00 2.52
282 283 4.814234 TGTGCGTGAGTTTGTTAGAATCTT 59.186 37.500 0.00 0.00 0.00 2.40
283 284 4.211374 GTGTGCGTGAGTTTGTTAGAATCT 59.789 41.667 0.00 0.00 0.00 2.40
284 285 4.211374 AGTGTGCGTGAGTTTGTTAGAATC 59.789 41.667 0.00 0.00 0.00 2.52
285 286 4.127171 AGTGTGCGTGAGTTTGTTAGAAT 58.873 39.130 0.00 0.00 0.00 2.40
286 287 3.527533 AGTGTGCGTGAGTTTGTTAGAA 58.472 40.909 0.00 0.00 0.00 2.10
287 288 3.173668 AGTGTGCGTGAGTTTGTTAGA 57.826 42.857 0.00 0.00 0.00 2.10
288 289 3.944422 AAGTGTGCGTGAGTTTGTTAG 57.056 42.857 0.00 0.00 0.00 2.34
289 290 4.871557 ACTAAAGTGTGCGTGAGTTTGTTA 59.128 37.500 0.00 0.00 0.00 2.41
290 291 3.687698 ACTAAAGTGTGCGTGAGTTTGTT 59.312 39.130 0.00 0.00 0.00 2.83
291 292 3.267483 ACTAAAGTGTGCGTGAGTTTGT 58.733 40.909 0.00 0.00 0.00 2.83
292 293 3.944422 ACTAAAGTGTGCGTGAGTTTG 57.056 42.857 0.00 0.00 0.00 2.93
293 294 4.690122 AGTACTAAAGTGTGCGTGAGTTT 58.310 39.130 0.00 0.00 0.00 2.66
295 296 3.305199 GGAGTACTAAAGTGTGCGTGAGT 60.305 47.826 0.00 0.00 0.00 3.41
296 297 3.243336 GGAGTACTAAAGTGTGCGTGAG 58.757 50.000 0.00 0.00 0.00 3.51
297 298 2.029649 GGGAGTACTAAAGTGTGCGTGA 60.030 50.000 0.00 0.00 0.00 4.35
300 301 2.416972 GGAGGGAGTACTAAAGTGTGCG 60.417 54.545 0.00 0.00 0.00 5.34
302 303 2.824341 ACGGAGGGAGTACTAAAGTGTG 59.176 50.000 0.00 0.00 0.00 3.82
303 304 3.087781 GACGGAGGGAGTACTAAAGTGT 58.912 50.000 0.00 0.00 0.00 3.55
305 306 2.311243 AGGACGGAGGGAGTACTAAAGT 59.689 50.000 0.00 0.00 29.47 2.66
306 307 3.015675 AGGACGGAGGGAGTACTAAAG 57.984 52.381 0.00 0.00 29.47 1.85
307 308 4.591321 TTAGGACGGAGGGAGTACTAAA 57.409 45.455 0.00 0.00 40.81 1.85
308 309 4.591321 TTTAGGACGGAGGGAGTACTAA 57.409 45.455 0.00 0.00 41.71 2.24
309 310 4.591321 TTTTAGGACGGAGGGAGTACTA 57.409 45.455 0.00 0.00 34.13 1.82
310 311 3.463048 TTTTAGGACGGAGGGAGTACT 57.537 47.619 0.00 0.00 36.60 2.73
313 314 4.161754 CACTTATTTTAGGACGGAGGGAGT 59.838 45.833 0.00 0.00 0.00 3.85
314 315 4.161754 ACACTTATTTTAGGACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
315 316 4.098894 ACACTTATTTTAGGACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
317 318 5.935789 TGAAACACTTATTTTAGGACGGAGG 59.064 40.000 0.00 0.00 0.00 4.30
318 319 7.172703 AGTTGAAACACTTATTTTAGGACGGAG 59.827 37.037 0.00 0.00 0.00 4.63
320 321 7.198306 AGTTGAAACACTTATTTTAGGACGG 57.802 36.000 0.00 0.00 0.00 4.79
322 323 9.797556 ACAAAGTTGAAACACTTATTTTAGGAC 57.202 29.630 0.00 0.00 35.87 3.85
342 343 8.562052 CGTCCCAAAATAAAGTTAGTACAAAGT 58.438 33.333 0.00 0.00 0.00 2.66
344 345 7.718753 TCCGTCCCAAAATAAAGTTAGTACAAA 59.281 33.333 0.00 0.00 0.00 2.83
345 346 7.222872 TCCGTCCCAAAATAAAGTTAGTACAA 58.777 34.615 0.00 0.00 0.00 2.41
346 347 6.767456 TCCGTCCCAAAATAAAGTTAGTACA 58.233 36.000 0.00 0.00 0.00 2.90
347 348 6.314648 CCTCCGTCCCAAAATAAAGTTAGTAC 59.685 42.308 0.00 0.00 0.00 2.73
348 349 6.408869 CCTCCGTCCCAAAATAAAGTTAGTA 58.591 40.000 0.00 0.00 0.00 1.82
349 350 5.250982 CCTCCGTCCCAAAATAAAGTTAGT 58.749 41.667 0.00 0.00 0.00 2.24
350 351 4.638865 CCCTCCGTCCCAAAATAAAGTTAG 59.361 45.833 0.00 0.00 0.00 2.34
351 352 4.289148 TCCCTCCGTCCCAAAATAAAGTTA 59.711 41.667 0.00 0.00 0.00 2.24
352 353 3.074836 TCCCTCCGTCCCAAAATAAAGTT 59.925 43.478 0.00 0.00 0.00 2.66
353 354 2.645797 TCCCTCCGTCCCAAAATAAAGT 59.354 45.455 0.00 0.00 0.00 2.66
354 355 3.279434 CTCCCTCCGTCCCAAAATAAAG 58.721 50.000 0.00 0.00 0.00 1.85
355 356 2.645797 ACTCCCTCCGTCCCAAAATAAA 59.354 45.455 0.00 0.00 0.00 1.40
356 357 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
357 358 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
358 359 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
359 360 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
361 362 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
362 363 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
363 364 0.324091 TCAACTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
367 368 4.730949 TTGTAATCAACTACTCCCTCCG 57.269 45.455 0.00 0.00 0.00 4.63
388 389 4.034048 GCGGAGTTTGAATCATTACATCGT 59.966 41.667 0.00 0.00 0.00 3.73
392 393 3.680490 TGGCGGAGTTTGAATCATTACA 58.320 40.909 0.00 0.00 0.00 2.41
394 395 5.708948 CTTTTGGCGGAGTTTGAATCATTA 58.291 37.500 0.00 0.00 0.00 1.90
454 455 2.810852 CCGAACGGAGGGAGTAGTATAC 59.189 54.545 7.53 0.00 38.76 1.47
455 456 2.705658 TCCGAACGGAGGGAGTAGTATA 59.294 50.000 12.04 0.00 39.76 1.47
457 458 0.911769 TCCGAACGGAGGGAGTAGTA 59.088 55.000 12.04 0.00 39.76 1.82
459 460 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
461 462 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
463 464 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
464 465 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
466 467 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
467 468 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
468 469 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
469 470 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
470 471 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
471 472 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
472 473 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
473 474 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
474 475 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
475 476 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
476 477 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
481 482 6.683974 AAATACATCCATTTCCGAGACAAG 57.316 37.500 0.00 0.00 0.00 3.16
482 483 7.561251 TCTAAATACATCCATTTCCGAGACAA 58.439 34.615 0.00 0.00 30.84 3.18
484 485 7.711339 AGTTCTAAATACATCCATTTCCGAGAC 59.289 37.037 0.00 0.00 30.84 3.36
485 486 7.792032 AGTTCTAAATACATCCATTTCCGAGA 58.208 34.615 0.00 0.00 30.84 4.04
486 487 9.542462 TTAGTTCTAAATACATCCATTTCCGAG 57.458 33.333 0.00 0.00 30.84 4.63
487 488 9.893634 TTTAGTTCTAAATACATCCATTTCCGA 57.106 29.630 1.47 0.00 30.84 4.55
513 514 9.376075 CGCAGAAATGGATGTATCTAGATTATT 57.624 33.333 11.25 0.00 0.00 1.40
514 515 8.753133 TCGCAGAAATGGATGTATCTAGATTAT 58.247 33.333 11.25 6.23 0.00 1.28
515 516 8.029522 GTCGCAGAAATGGATGTATCTAGATTA 58.970 37.037 11.25 1.04 39.69 1.75
518 519 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
519 520 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
520 521 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
521 522 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
522 523 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
523 524 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
524 525 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
526 527 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
527 528 6.515272 AAATTACTTGTCGCAGAAATGGAT 57.485 33.333 0.00 0.00 39.69 3.41
528 529 5.390461 CGAAATTACTTGTCGCAGAAATGGA 60.390 40.000 0.00 0.00 39.69 3.41
530 531 5.617609 TCGAAATTACTTGTCGCAGAAATG 58.382 37.500 0.00 0.00 39.69 2.32
531 532 5.856126 TCGAAATTACTTGTCGCAGAAAT 57.144 34.783 0.00 0.00 39.69 2.17
532 533 5.437263 GTTCGAAATTACTTGTCGCAGAAA 58.563 37.500 0.00 0.00 39.69 2.52
534 535 3.120616 CGTTCGAAATTACTTGTCGCAGA 59.879 43.478 0.00 0.00 34.80 4.26
535 536 3.395671 CGTTCGAAATTACTTGTCGCAG 58.604 45.455 0.00 0.00 34.80 5.18
537 538 2.409378 TCCGTTCGAAATTACTTGTCGC 59.591 45.455 0.00 0.00 34.80 5.19
538 539 3.060363 CCTCCGTTCGAAATTACTTGTCG 59.940 47.826 0.00 0.00 36.12 4.35
539 540 3.370061 CCCTCCGTTCGAAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
540 541 3.007182 TCCCTCCGTTCGAAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
541 542 3.592059 TCCCTCCGTTCGAAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
544 545 3.242549 ACTCCCTCCGTTCGAAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
545 546 3.763360 TGTACTCCCTCCGTTCGAAATTA 59.237 43.478 0.00 0.00 0.00 1.40
547 548 2.173519 TGTACTCCCTCCGTTCGAAAT 58.826 47.619 0.00 0.00 0.00 2.17
548 549 1.619654 TGTACTCCCTCCGTTCGAAA 58.380 50.000 0.00 0.00 0.00 3.46
549 550 1.619654 TTGTACTCCCTCCGTTCGAA 58.380 50.000 0.00 0.00 0.00 3.71
551 552 2.667473 AATTGTACTCCCTCCGTTCG 57.333 50.000 0.00 0.00 0.00 3.95
552 553 3.119955 GCAAAATTGTACTCCCTCCGTTC 60.120 47.826 0.00 0.00 0.00 3.95
554 555 2.224670 TGCAAAATTGTACTCCCTCCGT 60.225 45.455 0.00 0.00 0.00 4.69
555 556 2.432444 TGCAAAATTGTACTCCCTCCG 58.568 47.619 0.00 0.00 0.00 4.63
556 557 3.193479 CCTTGCAAAATTGTACTCCCTCC 59.807 47.826 0.00 0.00 0.00 4.30
558 559 4.112634 TCCTTGCAAAATTGTACTCCCT 57.887 40.909 0.00 0.00 0.00 4.20
559 560 6.152831 ACTTATCCTTGCAAAATTGTACTCCC 59.847 38.462 0.00 0.00 0.00 4.30
560 561 7.094377 TGACTTATCCTTGCAAAATTGTACTCC 60.094 37.037 0.00 0.00 0.00 3.85
561 562 7.816640 TGACTTATCCTTGCAAAATTGTACTC 58.183 34.615 0.00 0.00 0.00 2.59
564 565 7.309133 CCACTGACTTATCCTTGCAAAATTGTA 60.309 37.037 0.00 0.00 0.00 2.41
565 566 6.449698 CACTGACTTATCCTTGCAAAATTGT 58.550 36.000 0.00 0.80 0.00 2.71
566 567 5.865552 CCACTGACTTATCCTTGCAAAATTG 59.134 40.000 0.00 0.00 0.00 2.32
592 6677 3.395639 TGTCGATTCCGTTACAGCTTTT 58.604 40.909 0.00 0.00 37.05 2.27
603 6688 1.062002 CCGTTTTGGATGTCGATTCCG 59.938 52.381 11.44 0.00 42.00 4.30
673 6763 4.361451 AAGATTGGCGATGATTGACAAC 57.639 40.909 2.38 0.00 37.12 3.32
674 6764 6.057533 AGATAAGATTGGCGATGATTGACAA 58.942 36.000 2.90 2.90 39.02 3.18
675 6765 5.614308 AGATAAGATTGGCGATGATTGACA 58.386 37.500 0.00 0.00 0.00 3.58
676 6766 5.121454 GGAGATAAGATTGGCGATGATTGAC 59.879 44.000 0.00 0.00 0.00 3.18
677 6767 5.240891 GGAGATAAGATTGGCGATGATTGA 58.759 41.667 0.00 0.00 0.00 2.57
678 6768 4.394300 GGGAGATAAGATTGGCGATGATTG 59.606 45.833 0.00 0.00 0.00 2.67
679 6769 4.042062 TGGGAGATAAGATTGGCGATGATT 59.958 41.667 0.00 0.00 0.00 2.57
680 6770 3.584406 TGGGAGATAAGATTGGCGATGAT 59.416 43.478 0.00 0.00 0.00 2.45
681 6771 2.972021 TGGGAGATAAGATTGGCGATGA 59.028 45.455 0.00 0.00 0.00 2.92
682 6772 3.407424 TGGGAGATAAGATTGGCGATG 57.593 47.619 0.00 0.00 0.00 3.84
693 6783 3.244215 GGCTCACGATGAATGGGAGATAA 60.244 47.826 0.00 0.00 0.00 1.75
694 6784 2.300152 GGCTCACGATGAATGGGAGATA 59.700 50.000 0.00 0.00 0.00 1.98
707 6803 1.934220 GATCGGTCACTGGCTCACGA 61.934 60.000 0.00 0.00 34.70 4.35
721 6817 3.123804 CTCCAATTTGTAGACCGATCGG 58.876 50.000 32.20 32.20 42.03 4.18
722 6818 3.551890 CACTCCAATTTGTAGACCGATCG 59.448 47.826 8.51 8.51 0.00 3.69
875 6976 9.632807 GCAAGATAGAGTATATGTAAGACAAGG 57.367 37.037 0.00 0.00 0.00 3.61
891 6992 2.741228 GCTGTGGAGTGGCAAGATAGAG 60.741 54.545 0.00 0.00 0.00 2.43
892 6993 1.208052 GCTGTGGAGTGGCAAGATAGA 59.792 52.381 0.00 0.00 0.00 1.98
893 6994 1.065926 TGCTGTGGAGTGGCAAGATAG 60.066 52.381 0.00 0.00 32.79 2.08
894 6995 0.983467 TGCTGTGGAGTGGCAAGATA 59.017 50.000 0.00 0.00 32.79 1.98
895 6996 0.607489 GTGCTGTGGAGTGGCAAGAT 60.607 55.000 0.00 0.00 37.73 2.40
936 7037 5.415389 TCTCTAGATCTCTCTATGTGCATGC 59.585 44.000 11.82 11.82 33.52 4.06
939 7040 7.228507 GTCTTTCTCTAGATCTCTCTATGTGCA 59.771 40.741 0.00 0.00 33.52 4.57
953 7076 6.667848 TCTCTCTCTCTCTGTCTTTCTCTAGA 59.332 42.308 0.00 0.00 0.00 2.43
954 7077 6.878317 TCTCTCTCTCTCTGTCTTTCTCTAG 58.122 44.000 0.00 0.00 0.00 2.43
955 7078 6.667848 TCTCTCTCTCTCTCTGTCTTTCTCTA 59.332 42.308 0.00 0.00 0.00 2.43
961 7084 5.026121 TCTCTCTCTCTCTCTCTCTGTCTT 58.974 45.833 0.00 0.00 0.00 3.01
965 7088 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
1132 7256 7.430211 TCAACGACTATAGTACAGTAAATTGCG 59.570 37.037 5.09 3.17 0.00 4.85
1215 7359 2.490148 CGCCAGCTCCTCCACGATA 61.490 63.158 0.00 0.00 0.00 2.92
1425 7938 2.489329 TCCTCGAAGTTACTGGTTACGG 59.511 50.000 0.00 0.00 0.00 4.02
1430 7943 2.299297 CCAAGTCCTCGAAGTTACTGGT 59.701 50.000 0.00 0.00 0.00 4.00
1443 7956 2.297597 CAGAAAGACGAGTCCAAGTCCT 59.702 50.000 0.00 0.00 38.08 3.85
1444 7957 2.296471 TCAGAAAGACGAGTCCAAGTCC 59.704 50.000 0.00 0.00 38.08 3.85
1445 7958 3.644884 TCAGAAAGACGAGTCCAAGTC 57.355 47.619 0.00 0.00 37.63 3.01
1447 7960 5.233988 AGATTTCAGAAAGACGAGTCCAAG 58.766 41.667 1.28 0.00 0.00 3.61
1449 7962 4.873746 AGATTTCAGAAAGACGAGTCCA 57.126 40.909 1.28 0.00 0.00 4.02
1450 7963 5.230942 TGAAGATTTCAGAAAGACGAGTCC 58.769 41.667 1.28 0.00 34.08 3.85
1654 9320 1.154073 GTGCGTGTACTCCTCCGAC 60.154 63.158 0.00 0.00 0.00 4.79
1690 9356 1.112916 TCAGGTGGAAGCACGACTCA 61.113 55.000 0.00 0.00 36.26 3.41
1823 9489 5.016173 TGGAGGGAATTACCTTTTGTCATG 58.984 41.667 11.59 0.00 42.10 3.07
1897 9572 8.410141 TGAAACCGTCATTATTTGAAAGTTTCT 58.590 29.630 16.33 0.00 46.48 2.52
2031 9716 6.328672 AGTCCTTATCTCATCTTGGCATAACT 59.671 38.462 0.00 0.00 0.00 2.24
2032 9717 6.529220 AGTCCTTATCTCATCTTGGCATAAC 58.471 40.000 0.00 0.00 0.00 1.89
2127 9813 8.403606 GATGAGACCATCACATTTTCAATTTC 57.596 34.615 0.00 0.00 46.48 2.17
2170 9856 5.118510 CCAAAAAGTATTTCATTGTGGCGTC 59.881 40.000 0.00 0.00 37.28 5.19
2180 9866 5.528043 TTGCTCAGCCAAAAAGTATTTCA 57.472 34.783 0.00 0.00 37.28 2.69
2181 9867 6.843069 TTTTGCTCAGCCAAAAAGTATTTC 57.157 33.333 0.00 0.00 40.57 2.17
2212 9898 2.135933 GTCTAGTTATGGCATGGTCGC 58.864 52.381 10.98 0.00 0.00 5.19
2215 9901 4.655649 TCATCAGTCTAGTTATGGCATGGT 59.344 41.667 10.98 0.00 0.00 3.55
2216 9902 5.219343 TCATCAGTCTAGTTATGGCATGG 57.781 43.478 10.98 0.00 0.00 3.66
2218 9904 7.071069 TCATTCATCAGTCTAGTTATGGCAT 57.929 36.000 4.88 4.88 0.00 4.40
2219 9905 6.484364 TCATTCATCAGTCTAGTTATGGCA 57.516 37.500 0.00 0.00 0.00 4.92
2220 9906 6.933521 ACATCATTCATCAGTCTAGTTATGGC 59.066 38.462 0.00 0.00 0.00 4.40
2221 9907 7.930325 ACACATCATTCATCAGTCTAGTTATGG 59.070 37.037 0.00 0.00 0.00 2.74
2223 9909 8.922237 AGACACATCATTCATCAGTCTAGTTAT 58.078 33.333 0.00 0.00 33.51 1.89
2225 9911 7.180322 AGACACATCATTCATCAGTCTAGTT 57.820 36.000 0.00 0.00 33.51 2.24
2242 9929 2.616510 GCTAGGTCAAGGCAAGACACAT 60.617 50.000 10.76 0.64 37.74 3.21
2250 9937 1.812686 AACGACGCTAGGTCAAGGCA 61.813 55.000 10.68 0.00 46.42 4.75
2252 9939 1.725164 GAAAACGACGCTAGGTCAAGG 59.275 52.381 10.68 0.07 46.42 3.61
2253 9940 1.725164 GGAAAACGACGCTAGGTCAAG 59.275 52.381 10.68 0.61 46.42 3.02
2272 9964 9.521503 CTGATACCATAATATTACTCGTCATGG 57.478 37.037 8.87 8.87 37.93 3.66
2310 10002 9.812347 AAATATCAGATTTGCCTCCATACATAA 57.188 29.630 0.00 0.00 0.00 1.90
2356 10050 3.059634 TGACACAGCGTTAGTTTTTGC 57.940 42.857 0.00 0.00 0.00 3.68
2368 10062 2.493035 CCCCCAAAAATTTGACACAGC 58.507 47.619 7.44 0.00 40.55 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.