Multiple sequence alignment - TraesCS3B01G433400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G433400 chr3B 100.000 4069 0 0 1 4069 672384955 672380887 0.000000e+00 7515.0
1 TraesCS3B01G433400 chr3B 100.000 43 0 0 3434 3476 672381479 672381437 3.370000e-11 80.5
2 TraesCS3B01G433400 chr3B 100.000 43 0 0 3477 3519 672381522 672381480 3.370000e-11 80.5
3 TraesCS3B01G433400 chr3A 91.010 3526 208 45 1 3476 647148000 647144534 0.000000e+00 4654.0
4 TraesCS3B01G433400 chr3A 96.774 589 16 2 3478 4066 647144575 647143990 0.000000e+00 979.0
5 TraesCS3B01G433400 chr3D 86.767 2849 242 65 306 3091 510287325 510284549 0.000000e+00 3048.0
6 TraesCS3B01G433400 chr3D 92.233 309 20 3 2279 2585 510266109 510265803 6.250000e-118 435.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G433400 chr3B 672380887 672384955 4068 True 2558.666667 7515 100.000 1 4069 3 chr3B.!!$R1 4068
1 TraesCS3B01G433400 chr3A 647143990 647148000 4010 True 2816.500000 4654 93.892 1 4066 2 chr3A.!!$R1 4065
2 TraesCS3B01G433400 chr3D 510284549 510287325 2776 True 3048.000000 3048 86.767 306 3091 1 chr3D.!!$R2 2785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 398 0.385974 GCACGCAAGCTTCGATTTGT 60.386 50.0 20.18 1.68 45.62 2.83 F
1031 1081 0.036858 GAGTCAGGCTCCTCACAACC 60.037 60.0 5.96 0.00 38.27 3.77 F
1346 1400 0.038166 TCCTGAAATGGCCTCACACC 59.962 55.0 3.32 0.00 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1490 1544 0.036952 CACGGACTGCTTGAGATGGT 60.037 55.0 0.0 0.0 0.0 3.55 R
2512 2594 0.394565 ACAAGAGACCTCACCTGCAC 59.605 55.0 0.0 0.0 0.0 4.57 R
3183 3282 0.184451 CCCCTGCCAGCATAGTCATT 59.816 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.036977 GCGTCCTTTCCACGTGAA 57.963 55.556 19.30 6.73 39.54 3.18
37 38 5.657474 GTCCTTTCCACGTGAAGACATATA 58.343 41.667 19.30 0.00 33.63 0.86
40 41 5.050091 CCTTTCCACGTGAAGACATATATGC 60.050 44.000 19.30 5.91 33.63 3.14
42 43 3.067601 TCCACGTGAAGACATATATGCGT 59.932 43.478 19.30 9.86 0.00 5.24
44 45 4.301637 ACGTGAAGACATATATGCGTGA 57.698 40.909 12.79 0.00 0.00 4.35
45 46 4.290969 ACGTGAAGACATATATGCGTGAG 58.709 43.478 12.79 1.87 0.00 3.51
46 47 4.202020 ACGTGAAGACATATATGCGTGAGT 60.202 41.667 12.79 2.45 0.00 3.41
48 49 4.380087 GTGAAGACATATATGCGTGAGTCG 59.620 45.833 12.79 0.00 43.12 4.18
49 50 3.560902 AGACATATATGCGTGAGTCGG 57.439 47.619 12.79 0.00 40.26 4.79
61 62 1.451747 GAGTCGGCTCCGTCCTACT 60.452 63.158 5.50 4.25 40.74 2.57
74 75 2.289444 CGTCCTACTTTTTGCCCTCTCA 60.289 50.000 0.00 0.00 0.00 3.27
77 78 3.587061 TCCTACTTTTTGCCCTCTCATCA 59.413 43.478 0.00 0.00 0.00 3.07
113 139 4.720902 CAGTGACATGCGGGGCCA 62.721 66.667 4.39 0.00 0.00 5.36
201 227 2.436109 GTGGCCAAGCAGGAAGGA 59.564 61.111 7.24 0.00 41.22 3.36
202 228 1.973812 GTGGCCAAGCAGGAAGGAC 60.974 63.158 7.24 0.00 41.22 3.85
203 229 2.436109 GGCCAAGCAGGAAGGACA 59.564 61.111 0.00 0.00 41.22 4.02
204 230 1.228552 GGCCAAGCAGGAAGGACAA 60.229 57.895 0.00 0.00 41.22 3.18
205 231 1.527433 GGCCAAGCAGGAAGGACAAC 61.527 60.000 0.00 0.00 41.22 3.32
206 232 0.823356 GCCAAGCAGGAAGGACAACA 60.823 55.000 0.00 0.00 41.22 3.33
247 273 4.089361 TCTGCAATAGTGGAGACTGAAGA 58.911 43.478 10.53 0.00 46.25 2.87
254 280 2.040012 AGTGGAGACTGAAGAGACGGTA 59.960 50.000 0.00 0.00 0.00 4.02
262 288 0.601558 GAAGAGACGGTAGTGGTGCA 59.398 55.000 0.00 0.00 0.00 4.57
265 291 2.434359 GACGGTAGTGGTGCAGCC 60.434 66.667 14.36 5.89 37.90 4.85
266 292 3.952628 GACGGTAGTGGTGCAGCCC 62.953 68.421 14.36 0.65 36.04 5.19
267 293 4.015406 CGGTAGTGGTGCAGCCCA 62.015 66.667 14.36 2.01 36.04 5.36
268 294 2.045926 GGTAGTGGTGCAGCCCAG 60.046 66.667 14.36 0.00 34.43 4.45
270 296 2.930019 TAGTGGTGCAGCCCAGCT 60.930 61.111 14.36 8.79 42.38 4.24
271 297 2.528818 TAGTGGTGCAGCCCAGCTT 61.529 57.895 14.36 0.00 42.38 3.74
309 335 2.161808 TCGTCGCTTTTACAGAGAGAGG 59.838 50.000 0.00 0.00 30.90 3.69
356 386 0.390340 GATCTCAGGTGAGCACGCAA 60.390 55.000 1.81 0.00 41.80 4.85
360 390 2.111878 AGGTGAGCACGCAAGCTT 59.888 55.556 0.00 0.00 46.75 3.74
368 398 0.385974 GCACGCAAGCTTCGATTTGT 60.386 50.000 20.18 1.68 45.62 2.83
375 405 3.609807 GCAAGCTTCGATTTGTTCCAATC 59.390 43.478 0.00 0.00 0.00 2.67
397 427 2.438795 GTCCCCTCTCGCGTCTCT 60.439 66.667 5.77 0.00 0.00 3.10
416 446 2.565834 TCTCTTCTTCCCCGTCGATTTT 59.434 45.455 0.00 0.00 0.00 1.82
451 481 1.077212 CAAGGACCTGGGAGCCATG 60.077 63.158 0.00 0.00 30.82 3.66
488 518 3.005684 AGGAGCTGAAGAATATCTGAGCG 59.994 47.826 0.00 0.00 37.67 5.03
498 528 5.964758 AGAATATCTGAGCGGAGAATCATC 58.035 41.667 0.00 0.00 36.25 2.92
503 533 3.255395 TCTGAGCGGAGAATCATCTGATC 59.745 47.826 0.00 0.00 40.62 2.92
518 548 6.849502 TCATCTGATCAGCTCAAAATTTGAC 58.150 36.000 18.36 2.69 35.46 3.18
520 550 6.638096 TCTGATCAGCTCAAAATTTGACAA 57.362 33.333 18.36 0.00 35.46 3.18
522 552 6.039605 TCTGATCAGCTCAAAATTTGACAACA 59.960 34.615 18.36 0.14 35.46 3.33
523 553 6.751157 TGATCAGCTCAAAATTTGACAACAT 58.249 32.000 4.03 0.00 35.46 2.71
544 574 6.981722 ACATTTTAGCAATTCTCGGTTTCTT 58.018 32.000 0.00 0.00 0.00 2.52
545 575 7.433680 ACATTTTAGCAATTCTCGGTTTCTTT 58.566 30.769 0.00 0.00 0.00 2.52
591 621 3.409026 AACGCCTCAGAGTTCAGAAAT 57.591 42.857 0.00 0.00 28.93 2.17
592 622 4.537135 AACGCCTCAGAGTTCAGAAATA 57.463 40.909 0.00 0.00 28.93 1.40
593 623 3.851098 ACGCCTCAGAGTTCAGAAATAC 58.149 45.455 0.00 0.00 0.00 1.89
631 665 3.998913 TTATGGCCTCTGTGATGTTCA 57.001 42.857 3.32 0.00 0.00 3.18
632 666 2.414994 ATGGCCTCTGTGATGTTCAG 57.585 50.000 3.32 0.00 0.00 3.02
633 667 1.059098 TGGCCTCTGTGATGTTCAGT 58.941 50.000 3.32 0.00 34.86 3.41
637 671 2.550855 GCCTCTGTGATGTTCAGTTGGA 60.551 50.000 0.00 0.00 34.86 3.53
673 710 3.728385 ATTTCCTTCAGGGTTCAGGAG 57.272 47.619 0.00 0.00 38.00 3.69
842 892 4.142038 ACGTTATGCCTTTGGTTTCTTCT 58.858 39.130 0.00 0.00 0.00 2.85
923 973 3.504520 CCGTATGGGCACTACAAAAACTT 59.495 43.478 0.00 0.00 0.00 2.66
927 977 2.360801 TGGGCACTACAAAAACTTGAGC 59.639 45.455 0.00 0.00 0.00 4.26
938 988 3.782889 AAACTTGAGCAGGTTGTGTTC 57.217 42.857 0.00 0.00 36.93 3.18
945 995 0.590195 GCAGGTTGTGTTCTCAGCTG 59.410 55.000 7.63 7.63 38.75 4.24
969 1019 4.946157 TCTTCTCTCTTGATCATTTTGGCC 59.054 41.667 0.00 0.00 0.00 5.36
1031 1081 0.036858 GAGTCAGGCTCCTCACAACC 60.037 60.000 5.96 0.00 38.27 3.77
1069 1119 2.121564 GATCGACGGCCCGTTCGATA 62.122 60.000 29.68 14.36 43.64 2.92
1104 1154 0.693049 CCTTGGCAGGTACCAGAGTT 59.307 55.000 15.94 0.00 41.82 3.01
1153 1203 3.871485 ACTTCTTATGGCAAGCAGAGAG 58.129 45.455 0.00 0.00 0.00 3.20
1154 1204 2.322355 TCTTATGGCAAGCAGAGAGC 57.678 50.000 0.00 0.00 46.19 4.09
1164 1214 3.944476 GCAGAGAGCTTCCAGGAAA 57.056 52.632 2.72 0.00 41.15 3.13
1257 1310 3.853330 CAAGCCGATGTCCGCGTG 61.853 66.667 4.92 0.00 36.84 5.34
1272 1325 1.588932 CGTGTCGACGGATGATGGG 60.589 63.158 11.62 0.00 42.18 4.00
1332 1386 2.975489 AGTTTTCTGCCTCTCTTCCTGA 59.025 45.455 0.00 0.00 0.00 3.86
1346 1400 0.038166 TCCTGAAATGGCCTCACACC 59.962 55.000 3.32 0.00 0.00 4.16
1437 1491 2.427453 TCTCCCGTTCTGAGAAGTATGC 59.573 50.000 0.00 0.00 35.98 3.14
1464 1518 3.704061 AGAAGCTAGAGTGGAAGATGGTC 59.296 47.826 0.00 0.00 0.00 4.02
1490 1544 3.992943 AACATCCTGATTTCCGGTGTA 57.007 42.857 0.00 0.00 0.00 2.90
1497 1551 3.458189 CTGATTTCCGGTGTACCATCTC 58.542 50.000 0.00 0.00 35.14 2.75
1542 1596 8.909923 TCAGATTTCTGTATTCTTCACGGTATA 58.090 33.333 7.42 0.00 44.12 1.47
1544 1598 9.751542 AGATTTCTGTATTCTTCACGGTATAAG 57.248 33.333 0.00 0.00 0.00 1.73
1549 1603 7.121611 TCTGTATTCTTCACGGTATAAGTGTGA 59.878 37.037 8.80 4.69 40.62 3.58
1576 1630 6.623486 TGTATTCTTCATGCCTGAATGTTTG 58.377 36.000 4.81 0.00 40.52 2.93
1612 1666 7.659390 AGAGTTTTCAGTATGGTCTCTTCTTTG 59.341 37.037 0.00 0.00 36.16 2.77
1628 1682 4.890158 TCTTTGACCACAAGAGATAGCA 57.110 40.909 0.00 0.00 37.32 3.49
1647 1701 4.910195 AGCATGACAGAACCTTACATTCA 58.090 39.130 0.00 0.00 0.00 2.57
1663 1717 7.118390 CCTTACATTCATGTCGTTTTCTCTCTT 59.882 37.037 0.00 0.00 41.97 2.85
1697 1751 6.286758 TGAGCAGGATGAGATGAAGAAATAC 58.713 40.000 0.00 0.00 39.69 1.89
1729 1783 5.638596 TTGCTCGTACTCTCTCATGTTTA 57.361 39.130 0.00 0.00 0.00 2.01
1742 1796 6.377429 TCTCTCATGTTTACTCGGTACAATCT 59.623 38.462 0.00 0.00 0.00 2.40
1757 1811 5.163602 GGTACAATCTCTGAAGATCGTCTGT 60.164 44.000 10.08 7.11 41.54 3.41
1798 1852 1.922570 TTTCTCGCTCCTGATAACGC 58.077 50.000 0.00 0.00 0.00 4.84
1817 1871 1.870993 GCGGTGGACGTTCTACAACTT 60.871 52.381 0.00 0.00 46.52 2.66
1820 1874 2.206750 GTGGACGTTCTACAACTTGCA 58.793 47.619 0.00 0.00 30.87 4.08
1821 1875 2.033151 GTGGACGTTCTACAACTTGCAC 60.033 50.000 0.00 0.00 42.92 4.57
1823 1877 1.191647 GACGTTCTACAACTTGCACGG 59.808 52.381 0.00 0.00 31.93 4.94
1826 1880 2.409975 GTTCTACAACTTGCACGGCTA 58.590 47.619 0.00 0.00 0.00 3.93
1847 1901 2.343758 GACGCACCAAGGCTCTCA 59.656 61.111 0.00 0.00 0.00 3.27
2024 2078 9.950496 ATCCTATTATGGCTTAATCACTAGTTG 57.050 33.333 8.72 0.00 32.66 3.16
2032 2086 2.789409 AATCACTAGTTGCTCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
2044 2098 2.819595 CCACCCCGCAACATCTCG 60.820 66.667 0.00 0.00 0.00 4.04
2107 2188 1.163420 TTCCACATGACGCACACACC 61.163 55.000 0.00 0.00 0.00 4.16
2128 2209 4.901849 ACCTAGAATGCTTATACCTGCTGA 59.098 41.667 0.00 0.00 0.00 4.26
2130 2211 3.722147 AGAATGCTTATACCTGCTGACG 58.278 45.455 0.00 0.00 0.00 4.35
2134 2215 2.434336 TGCTTATACCTGCTGACGGAAT 59.566 45.455 0.00 0.00 0.00 3.01
2135 2216 3.118408 TGCTTATACCTGCTGACGGAATT 60.118 43.478 0.00 0.00 0.00 2.17
2139 2220 4.701956 ATACCTGCTGACGGAATTTTTG 57.298 40.909 0.00 0.00 0.00 2.44
2173 2255 8.704668 ACATCTACATACTGTCATGGTTCATAA 58.295 33.333 0.00 0.00 29.58 1.90
2178 2260 8.985315 ACATACTGTCATGGTTCATAATCATT 57.015 30.769 0.00 0.00 0.00 2.57
2200 2282 8.249638 TCATTGTTCTCAAAACTGAATTTGACA 58.750 29.630 8.53 5.17 42.68 3.58
2228 2310 2.822561 AGGCAAGAAAGAGCTAAAAGGC 59.177 45.455 0.00 0.00 0.00 4.35
2308 2390 2.260247 CCGAGACGGTTGTAGGACA 58.740 57.895 1.80 0.00 42.73 4.02
2314 2396 2.370849 AGACGGTTGTAGGACAATTGGT 59.629 45.455 10.83 0.00 40.59 3.67
2603 2688 8.951969 GTTAATACTACGTAGTACAACAGATGC 58.048 37.037 32.49 18.55 45.11 3.91
2615 2700 5.051891 ACAACAGATGCTTGCTTTCATAC 57.948 39.130 0.00 0.00 0.00 2.39
2786 2885 1.131638 AGTTGCCTTCCTCACTCACA 58.868 50.000 0.00 0.00 0.00 3.58
2801 2900 2.093288 ACTCACACACCATATGCTCCAG 60.093 50.000 0.00 0.00 0.00 3.86
2805 2904 3.758023 CACACACCATATGCTCCAGAAAA 59.242 43.478 0.00 0.00 0.00 2.29
2813 2912 6.127253 ACCATATGCTCCAGAAAAGAAATTGG 60.127 38.462 0.00 0.00 0.00 3.16
2888 2987 6.500684 TCTTCAGCATTTCTGTTGTATTCC 57.499 37.500 0.00 0.00 43.32 3.01
3041 3140 4.758165 TCCGTCCTAAAAGCGAGAAAAATT 59.242 37.500 0.00 0.00 0.00 1.82
3098 3197 3.754955 TCGACAGTAATAACGTGAGCAG 58.245 45.455 0.00 0.00 0.00 4.24
3157 3256 3.165058 TGAGTTACAGATGATGGCGAC 57.835 47.619 0.00 0.00 0.00 5.19
3183 3282 0.469705 AGGTGCTTTTGCCATGGTCA 60.470 50.000 14.67 9.23 46.87 4.02
3185 3284 1.002315 GGTGCTTTTGCCATGGTCAAT 59.998 47.619 14.67 0.00 46.87 2.57
3210 3309 3.970410 CTGGCAGGGGGCTTGACA 61.970 66.667 6.61 0.00 44.01 3.58
3211 3310 3.267233 TGGCAGGGGGCTTGACAT 61.267 61.111 0.00 0.00 44.01 3.06
3248 3347 1.130561 GAGGTGGTTAACATGCGCTTC 59.869 52.381 9.73 0.00 0.00 3.86
3313 3412 0.608640 CTTGTCCTCGCCAACTAGGT 59.391 55.000 0.00 0.00 40.61 3.08
3345 3444 4.822036 TTCCAGTGGAAACGTGTTAATG 57.178 40.909 22.59 0.00 38.93 1.90
3395 3494 3.490933 GCGAGTAGTCAGCCAACATATCA 60.491 47.826 0.00 0.00 0.00 2.15
3396 3495 4.797604 GCGAGTAGTCAGCCAACATATCAT 60.798 45.833 0.00 0.00 0.00 2.45
3433 3533 6.821388 AGCAGAGAAGATCATTTACCGTTAT 58.179 36.000 0.00 0.00 0.00 1.89
3444 3544 5.815222 TCATTTACCGTTATCCATGACACTG 59.185 40.000 0.00 0.00 0.00 3.66
3445 3545 5.408880 TTTACCGTTATCCATGACACTGA 57.591 39.130 0.00 0.00 0.00 3.41
3446 3546 3.526931 ACCGTTATCCATGACACTGAG 57.473 47.619 0.00 0.00 0.00 3.35
3447 3547 2.832129 ACCGTTATCCATGACACTGAGT 59.168 45.455 0.00 0.00 0.00 3.41
3448 3548 3.190079 CCGTTATCCATGACACTGAGTG 58.810 50.000 11.70 11.70 39.75 3.51
3449 3549 3.119137 CCGTTATCCATGACACTGAGTGA 60.119 47.826 20.97 0.00 36.96 3.41
3450 3550 4.494484 CGTTATCCATGACACTGAGTGAA 58.506 43.478 20.97 7.41 36.96 3.18
3451 3551 4.564372 CGTTATCCATGACACTGAGTGAAG 59.436 45.833 20.97 5.56 36.96 3.02
3452 3552 5.482908 GTTATCCATGACACTGAGTGAAGT 58.517 41.667 20.97 0.00 36.96 3.01
3453 3553 6.625081 CGTTATCCATGACACTGAGTGAAGTA 60.625 42.308 20.97 2.57 36.96 2.24
3454 3554 5.946942 ATCCATGACACTGAGTGAAGTAT 57.053 39.130 20.97 4.86 36.96 2.12
3455 3555 5.077134 TCCATGACACTGAGTGAAGTATG 57.923 43.478 20.97 15.49 36.96 2.39
3456 3556 4.772100 TCCATGACACTGAGTGAAGTATGA 59.228 41.667 20.97 5.58 36.96 2.15
3457 3557 4.867047 CCATGACACTGAGTGAAGTATGAC 59.133 45.833 20.97 1.12 36.96 3.06
3458 3558 5.473039 CATGACACTGAGTGAAGTATGACA 58.527 41.667 20.97 6.33 36.96 3.58
3459 3559 5.126396 TGACACTGAGTGAAGTATGACAG 57.874 43.478 20.97 0.00 36.96 3.51
3460 3560 3.919216 ACACTGAGTGAAGTATGACAGC 58.081 45.455 20.97 0.00 36.96 4.40
3461 3561 2.919859 CACTGAGTGAAGTATGACAGCG 59.080 50.000 6.79 0.00 35.23 5.18
3462 3562 2.094494 ACTGAGTGAAGTATGACAGCGG 60.094 50.000 0.00 0.00 0.00 5.52
3463 3563 1.281899 GAGTGAAGTATGACAGCGGC 58.718 55.000 0.00 0.00 0.00 6.53
3464 3564 0.458543 AGTGAAGTATGACAGCGGCG 60.459 55.000 0.51 0.51 0.00 6.46
3465 3565 0.457853 GTGAAGTATGACAGCGGCGA 60.458 55.000 12.98 0.00 0.00 5.54
3466 3566 0.245266 TGAAGTATGACAGCGGCGAA 59.755 50.000 12.98 0.00 0.00 4.70
3467 3567 0.645868 GAAGTATGACAGCGGCGAAC 59.354 55.000 12.98 0.00 0.00 3.95
3468 3568 0.037697 AAGTATGACAGCGGCGAACA 60.038 50.000 12.98 4.52 0.00 3.18
3469 3569 0.175760 AGTATGACAGCGGCGAACAT 59.824 50.000 12.98 11.98 0.00 2.71
3470 3570 0.301687 GTATGACAGCGGCGAACATG 59.698 55.000 12.98 5.63 0.00 3.21
3471 3571 0.174617 TATGACAGCGGCGAACATGA 59.825 50.000 12.98 0.00 0.00 3.07
3472 3572 0.673333 ATGACAGCGGCGAACATGAA 60.673 50.000 12.98 0.00 0.00 2.57
3473 3573 1.291184 TGACAGCGGCGAACATGAAG 61.291 55.000 12.98 0.00 0.00 3.02
3474 3574 1.005037 ACAGCGGCGAACATGAAGA 60.005 52.632 12.98 0.00 0.00 2.87
3475 3575 1.291877 ACAGCGGCGAACATGAAGAC 61.292 55.000 12.98 0.00 0.00 3.01
3476 3576 1.016130 CAGCGGCGAACATGAAGACT 61.016 55.000 12.98 0.00 0.00 3.24
3477 3577 0.737715 AGCGGCGAACATGAAGACTC 60.738 55.000 12.98 0.00 0.00 3.36
3478 3578 1.696832 GCGGCGAACATGAAGACTCC 61.697 60.000 12.98 0.00 0.00 3.85
3479 3579 0.389817 CGGCGAACATGAAGACTCCA 60.390 55.000 0.00 0.00 0.00 3.86
3480 3580 1.740380 CGGCGAACATGAAGACTCCAT 60.740 52.381 0.00 0.00 0.00 3.41
3481 3581 1.667724 GGCGAACATGAAGACTCCATG 59.332 52.381 0.00 0.00 45.03 3.66
3482 3582 2.621338 GCGAACATGAAGACTCCATGA 58.379 47.619 8.87 0.00 42.89 3.07
3483 3583 2.349886 GCGAACATGAAGACTCCATGAC 59.650 50.000 8.87 1.69 42.89 3.06
3484 3584 3.588955 CGAACATGAAGACTCCATGACA 58.411 45.455 8.87 0.00 42.89 3.58
3485 3585 3.369147 CGAACATGAAGACTCCATGACAC 59.631 47.826 8.87 0.00 42.89 3.67
3486 3586 4.573900 GAACATGAAGACTCCATGACACT 58.426 43.478 8.87 0.00 42.89 3.55
3487 3587 3.935315 ACATGAAGACTCCATGACACTG 58.065 45.455 8.87 0.00 42.89 3.66
3509 3609 0.245266 TGAAGTATGACAGCGGCGAA 59.755 50.000 12.98 0.00 0.00 4.70
3529 3629 4.486090 GAACATGAAGACGTAGAAGCAGA 58.514 43.478 0.00 0.00 0.00 4.26
3530 3630 3.839293 ACATGAAGACGTAGAAGCAGAC 58.161 45.455 0.00 0.00 0.00 3.51
3719 3819 2.641305 GAAGCTCAGCACAAGGATGAT 58.359 47.619 0.00 0.00 41.87 2.45
3732 3832 3.623906 AGGATGATCCTCTGTGTGTTG 57.376 47.619 8.51 0.00 45.66 3.33
3753 3853 2.742053 GGTCAAGTTATCTTTGCTCGCA 59.258 45.455 0.00 0.00 0.00 5.10
3791 3891 0.922626 GGCAAGAGGGAAAGGGATCT 59.077 55.000 0.00 0.00 0.00 2.75
3804 3904 5.221823 GGAAAGGGATCTGAATAGGGAGAAG 60.222 48.000 0.00 0.00 0.00 2.85
3807 3907 2.028567 GGATCTGAATAGGGAGAAGCCG 60.029 54.545 0.00 0.00 37.63 5.52
3902 4002 8.347771 CCACATACCATATCAAATTCTGTCAAG 58.652 37.037 0.00 0.00 0.00 3.02
3904 4004 7.503566 ACATACCATATCAAATTCTGTCAAGGG 59.496 37.037 0.00 0.00 0.00 3.95
3921 4021 1.111277 GGGCCGAAAGCAATACCAAT 58.889 50.000 0.00 0.00 46.50 3.16
3975 4075 7.608376 AGATATCGATAGTACTGCTTTCAGCTA 59.392 37.037 11.41 0.00 39.86 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.351835 GCCGACTCACGCATATATGTCT 60.352 50.000 14.14 0.00 41.07 3.41
37 38 4.498520 CGGAGCCGACTCACGCAT 62.499 66.667 2.00 0.00 45.42 4.73
40 41 4.477975 GGACGGAGCCGACTCACG 62.478 72.222 16.83 4.65 45.42 4.35
42 43 1.748122 GTAGGACGGAGCCGACTCA 60.748 63.158 16.83 0.00 45.42 3.41
44 45 0.611340 AAAGTAGGACGGAGCCGACT 60.611 55.000 16.83 14.70 44.39 4.18
45 46 0.245813 AAAAGTAGGACGGAGCCGAC 59.754 55.000 16.83 9.51 42.83 4.79
46 47 0.971386 AAAAAGTAGGACGGAGCCGA 59.029 50.000 16.83 0.00 42.83 5.54
48 49 0.803117 GCAAAAAGTAGGACGGAGCC 59.197 55.000 0.00 0.00 0.00 4.70
49 50 0.803117 GGCAAAAAGTAGGACGGAGC 59.197 55.000 0.00 0.00 0.00 4.70
61 62 3.569701 GTGAAGTGATGAGAGGGCAAAAA 59.430 43.478 0.00 0.00 0.00 1.94
113 139 2.936032 GTCCCCCACAGAAGGCCT 60.936 66.667 0.00 0.00 0.00 5.19
201 227 1.473258 TTGAAGCCTGCTTGTGTTGT 58.527 45.000 9.48 0.00 36.26 3.32
202 228 2.582728 TTTGAAGCCTGCTTGTGTTG 57.417 45.000 9.48 0.00 36.26 3.33
203 229 3.169355 CTTTTGAAGCCTGCTTGTGTT 57.831 42.857 9.48 0.00 36.26 3.32
204 230 2.877043 CTTTTGAAGCCTGCTTGTGT 57.123 45.000 9.48 0.00 36.26 3.72
226 252 4.159321 TCTCTTCAGTCTCCACTATTGCAG 59.841 45.833 0.00 0.00 0.00 4.41
228 254 4.429108 GTCTCTTCAGTCTCCACTATTGC 58.571 47.826 0.00 0.00 0.00 3.56
229 255 4.439426 CCGTCTCTTCAGTCTCCACTATTG 60.439 50.000 0.00 0.00 0.00 1.90
231 257 3.283751 CCGTCTCTTCAGTCTCCACTAT 58.716 50.000 0.00 0.00 0.00 2.12
232 258 2.040012 ACCGTCTCTTCAGTCTCCACTA 59.960 50.000 0.00 0.00 0.00 2.74
247 273 2.657237 GCTGCACCACTACCGTCT 59.343 61.111 0.00 0.00 0.00 4.18
254 280 3.857309 GAAGCTGGGCTGCACCACT 62.857 63.158 0.00 0.00 39.62 4.00
262 288 1.984424 AGAGAAAGAAGAAGCTGGGCT 59.016 47.619 0.00 0.00 42.56 5.19
265 291 3.342719 GGGAAGAGAAAGAAGAAGCTGG 58.657 50.000 0.00 0.00 0.00 4.85
266 292 2.999355 CGGGAAGAGAAAGAAGAAGCTG 59.001 50.000 0.00 0.00 0.00 4.24
267 293 2.635427 ACGGGAAGAGAAAGAAGAAGCT 59.365 45.455 0.00 0.00 0.00 3.74
268 294 2.997303 GACGGGAAGAGAAAGAAGAAGC 59.003 50.000 0.00 0.00 0.00 3.86
270 296 2.626743 ACGACGGGAAGAGAAAGAAGAA 59.373 45.455 0.00 0.00 0.00 2.52
271 297 2.228343 GACGACGGGAAGAGAAAGAAGA 59.772 50.000 0.00 0.00 0.00 2.87
368 398 0.999712 GAGGGGACTTGGGATTGGAA 59.000 55.000 0.00 0.00 44.43 3.53
375 405 4.148825 CGCGAGAGGGGACTTGGG 62.149 72.222 0.00 0.00 44.43 4.12
397 427 2.354403 GGAAAATCGACGGGGAAGAAGA 60.354 50.000 0.00 0.00 0.00 2.87
416 446 0.417437 TTGGGACCATCAGAGAGGGA 59.583 55.000 4.55 0.00 35.26 4.20
488 518 4.603989 TGAGCTGATCAGATGATTCTCC 57.396 45.455 27.04 6.76 34.37 3.71
498 528 6.210796 TGTTGTCAAATTTTGAGCTGATCAG 58.789 36.000 18.84 18.84 41.01 2.90
503 533 7.795272 GCTAAAATGTTGTCAAATTTTGAGCTG 59.205 33.333 12.02 9.36 41.01 4.24
518 548 6.863126 AGAAACCGAGAATTGCTAAAATGTTG 59.137 34.615 0.00 0.00 0.00 3.33
520 550 6.575162 AGAAACCGAGAATTGCTAAAATGT 57.425 33.333 0.00 0.00 0.00 2.71
522 552 8.887036 AAAAAGAAACCGAGAATTGCTAAAAT 57.113 26.923 0.00 0.00 0.00 1.82
544 574 2.783510 AGACTTCCACTCCCCAGAAAAA 59.216 45.455 0.00 0.00 0.00 1.94
545 575 2.372172 GAGACTTCCACTCCCCAGAAAA 59.628 50.000 0.00 0.00 0.00 2.29
591 621 6.326583 CCATAAACCAGGGAATCAGACTAGTA 59.673 42.308 0.00 0.00 0.00 1.82
592 622 5.131142 CCATAAACCAGGGAATCAGACTAGT 59.869 44.000 0.00 0.00 0.00 2.57
593 623 5.615289 CCATAAACCAGGGAATCAGACTAG 58.385 45.833 0.00 0.00 0.00 2.57
631 665 7.839680 AATTGTAAGAATTTCCTGTCCAACT 57.160 32.000 0.00 0.00 0.00 3.16
632 666 8.520835 GAAATTGTAAGAATTTCCTGTCCAAC 57.479 34.615 9.74 0.00 39.49 3.77
659 696 3.045634 TGTTTCTCTCCTGAACCCTGAA 58.954 45.455 0.00 0.00 0.00 3.02
664 701 3.077359 CCATGTGTTTCTCTCCTGAACC 58.923 50.000 0.00 0.00 0.00 3.62
673 710 7.246311 CACAGAATTACATCCATGTGTTTCTC 58.754 38.462 12.53 1.10 41.89 2.87
910 960 4.900635 ACCTGCTCAAGTTTTTGTAGTG 57.099 40.909 0.00 0.00 35.73 2.74
923 973 1.811558 GCTGAGAACACAACCTGCTCA 60.812 52.381 0.00 0.00 34.71 4.26
927 977 1.869767 GACAGCTGAGAACACAACCTG 59.130 52.381 23.35 0.00 0.00 4.00
938 988 4.158209 TGATCAAGAGAGAAGACAGCTGAG 59.842 45.833 23.35 0.00 0.00 3.35
945 995 5.163673 GGCCAAAATGATCAAGAGAGAAGAC 60.164 44.000 0.00 0.00 0.00 3.01
1029 1079 0.034059 CACTGCTGTCGAAGAAGGGT 59.966 55.000 0.00 0.00 39.69 4.34
1031 1081 1.621301 CGCACTGCTGTCGAAGAAGG 61.621 60.000 0.00 0.00 39.69 3.46
1069 1119 1.404391 CAAGGTACCGCACTCGTAGAT 59.596 52.381 6.18 0.00 33.89 1.98
1095 1145 1.555075 GGATCTGGCACAACTCTGGTA 59.445 52.381 0.00 0.00 38.70 3.25
1104 1154 0.915872 ATGGAGGTGGATCTGGCACA 60.916 55.000 3.47 0.00 0.00 4.57
1154 1204 4.140536 AGTCTCTTTTGCTTTCCTGGAAG 58.859 43.478 9.42 5.50 0.00 3.46
1164 1214 2.906354 ACACAACGAGTCTCTTTTGCT 58.094 42.857 9.79 0.00 0.00 3.91
1174 1224 1.416401 AGGGACATGAACACAACGAGT 59.584 47.619 0.00 0.00 0.00 4.18
1257 1310 1.300233 GCTCCCATCATCCGTCGAC 60.300 63.158 5.18 5.18 0.00 4.20
1293 1346 6.488006 AGAAAACTGTACTCACAAGAATGCAT 59.512 34.615 0.00 0.00 33.22 3.96
1320 1374 1.563410 AGGCCATTTCAGGAAGAGAGG 59.437 52.381 5.01 0.00 0.00 3.69
1321 1375 2.238144 TGAGGCCATTTCAGGAAGAGAG 59.762 50.000 5.01 0.00 0.00 3.20
1332 1386 1.004745 CTAGTGGGTGTGAGGCCATTT 59.995 52.381 5.01 0.00 0.00 2.32
1346 1400 1.270907 ACCTGCCTCTGTTCTAGTGG 58.729 55.000 0.00 0.00 41.90 4.00
1391 1445 0.680280 TGCCCTGTAGGAGACGAGAC 60.680 60.000 0.00 0.00 38.24 3.36
1437 1491 3.766591 TCTTCCACTCTAGCTTCTTCCAG 59.233 47.826 0.00 0.00 0.00 3.86
1464 1518 3.624861 CCGGAAATCAGGATGTTTCTGAG 59.375 47.826 0.00 0.00 43.45 3.35
1490 1544 0.036952 CACGGACTGCTTGAGATGGT 60.037 55.000 0.00 0.00 0.00 3.55
1497 1551 1.728971 GATGAAGACACGGACTGCTTG 59.271 52.381 0.00 0.00 0.00 4.01
1542 1596 5.182001 GGCATGAAGAATACAGTTCACACTT 59.818 40.000 0.00 0.00 35.55 3.16
1544 1598 4.697352 AGGCATGAAGAATACAGTTCACAC 59.303 41.667 0.00 0.00 35.55 3.82
1576 1630 7.012421 ACCATACTGAAAACTCTGAAGAAACAC 59.988 37.037 0.00 0.00 0.00 3.32
1612 1666 4.118410 CTGTCATGCTATCTCTTGTGGTC 58.882 47.826 0.00 0.00 0.00 4.02
1615 1669 4.569966 GGTTCTGTCATGCTATCTCTTGTG 59.430 45.833 0.00 0.00 0.00 3.33
1622 1676 6.763135 TGAATGTAAGGTTCTGTCATGCTATC 59.237 38.462 0.00 0.00 0.00 2.08
1628 1682 5.582269 CGACATGAATGTAAGGTTCTGTCAT 59.418 40.000 0.00 0.00 41.95 3.06
1647 1701 4.212214 GCTTCACAAGAGAGAAAACGACAT 59.788 41.667 0.00 0.00 0.00 3.06
1663 1717 2.156917 CATCCTGCTCAAAGCTTCACA 58.843 47.619 0.00 0.00 42.97 3.58
1697 1751 0.373716 GTACGAGCAAATGAAGGGCG 59.626 55.000 0.00 0.00 0.00 6.13
1729 1783 4.035792 CGATCTTCAGAGATTGTACCGAGT 59.964 45.833 0.00 0.00 42.66 4.18
1742 1796 2.676839 GTCGGTACAGACGATCTTCAGA 59.323 50.000 10.43 0.00 42.82 3.27
1798 1852 1.790623 CAAGTTGTAGAACGTCCACCG 59.209 52.381 0.00 0.00 44.03 4.94
1817 1871 2.813474 GCGTCACATAGCCGTGCA 60.813 61.111 0.00 0.00 36.80 4.57
1820 1874 2.125673 GGTGCGTCACATAGCCGT 60.126 61.111 11.20 0.00 35.86 5.68
1821 1875 1.695893 CTTGGTGCGTCACATAGCCG 61.696 60.000 11.20 0.00 35.86 5.52
1823 1877 1.982073 GCCTTGGTGCGTCACATAGC 61.982 60.000 11.20 5.46 35.86 2.97
1826 1880 1.672356 GAGCCTTGGTGCGTCACAT 60.672 57.895 11.20 0.00 35.86 3.21
1847 1901 6.017523 CAGTGATCATACGAGTACAGATGAGT 60.018 42.308 0.00 0.00 32.12 3.41
2004 2058 6.055588 GGAGCAACTAGTGATTAAGCCATAA 58.944 40.000 0.00 0.00 0.00 1.90
2024 2078 3.134127 GATGTTGCGGGGTGGAGC 61.134 66.667 0.00 0.00 0.00 4.70
2065 2119 9.875691 GGAAGATCATACACATAACATATAGCA 57.124 33.333 0.00 0.00 0.00 3.49
2107 2188 4.920340 CGTCAGCAGGTATAAGCATTCTAG 59.080 45.833 0.00 0.00 0.00 2.43
2128 2209 2.621055 TGTGCAGCTACAAAAATTCCGT 59.379 40.909 0.00 0.00 0.00 4.69
2130 2211 5.064441 AGATGTGCAGCTACAAAAATTCC 57.936 39.130 0.00 0.00 33.69 3.01
2173 2255 9.252962 GTCAAATTCAGTTTTGAGAACAATGAT 57.747 29.630 0.15 0.00 44.06 2.45
2178 2260 6.918626 TGTGTCAAATTCAGTTTTGAGAACA 58.081 32.000 9.55 9.55 44.06 3.18
2200 2282 2.371510 AGCTCTTTCTTGCCTTCTCTGT 59.628 45.455 0.00 0.00 0.00 3.41
2228 2310 6.942576 TGAAGATAAACCTTCTTTTCCTCCAG 59.057 38.462 0.00 0.00 42.20 3.86
2308 2390 1.985622 TCTGATCCCAGGGACCAATT 58.014 50.000 11.70 0.00 40.76 2.32
2314 2396 2.342406 TCAGTTTCTGATCCCAGGGA 57.658 50.000 11.90 11.90 40.76 4.20
2346 2428 1.410153 AGGCAGGAAACTTGCAAACAG 59.590 47.619 0.00 0.00 40.21 3.16
2512 2594 0.394565 ACAAGAGACCTCACCTGCAC 59.605 55.000 0.00 0.00 0.00 4.57
2603 2688 6.939132 ATTCTGAGATGGTATGAAAGCAAG 57.061 37.500 0.00 0.00 39.48 4.01
2641 2726 1.347062 GGTGCCCCATTTGGAAAAGA 58.653 50.000 0.00 0.00 37.39 2.52
2665 2750 6.798427 TCAGTTTATGGAGATGAAGCTAGT 57.202 37.500 0.00 0.00 0.00 2.57
2786 2885 4.574674 TCTTTTCTGGAGCATATGGTGT 57.425 40.909 13.10 0.00 0.00 4.16
2813 2912 6.817765 TTTCCTATTGTGGTCAATTGAGTC 57.182 37.500 8.80 5.11 43.12 3.36
2826 2925 7.303634 CGTACAGCAGTAAATTTCCTATTGT 57.696 36.000 0.00 0.00 30.67 2.71
3041 3140 1.631405 CAATTGGCTTGAGGGGTGAA 58.369 50.000 0.00 0.00 36.97 3.18
3098 3197 4.317671 ACACACCTGTACTTACTGTCAC 57.682 45.455 0.00 0.00 0.00 3.67
3178 3277 1.281577 TGCCAGCATAGTCATTGACCA 59.718 47.619 13.14 0.00 32.18 4.02
3183 3282 0.184451 CCCCTGCCAGCATAGTCATT 59.816 55.000 0.00 0.00 0.00 2.57
3185 3284 2.377810 CCCCCTGCCAGCATAGTCA 61.378 63.158 0.00 0.00 0.00 3.41
3208 3307 2.025981 TCCCATGTGCAAGCTAGAATGT 60.026 45.455 0.00 0.00 0.00 2.71
3209 3308 2.617308 CTCCCATGTGCAAGCTAGAATG 59.383 50.000 0.00 0.00 0.00 2.67
3210 3309 2.422519 CCTCCCATGTGCAAGCTAGAAT 60.423 50.000 0.00 0.00 0.00 2.40
3211 3310 1.065199 CCTCCCATGTGCAAGCTAGAA 60.065 52.381 0.00 0.00 0.00 2.10
3248 3347 2.023318 CGGTAGGCGAGGTCAGTAG 58.977 63.158 0.00 0.00 0.00 2.57
3313 3412 1.908619 TCCACTGGAATTGCAGAGCTA 59.091 47.619 30.84 12.60 0.00 3.32
3345 3444 2.480419 ACTCTTGCGCTAACACATGAAC 59.520 45.455 9.73 0.00 0.00 3.18
3388 3487 8.819845 TCTGCTCCATAGTAATCAATGATATGT 58.180 33.333 0.00 0.00 0.00 2.29
3395 3494 7.609097 TCTTCTCTGCTCCATAGTAATCAAT 57.391 36.000 0.00 0.00 0.00 2.57
3396 3495 7.288621 TGATCTTCTCTGCTCCATAGTAATCAA 59.711 37.037 0.00 0.00 0.00 2.57
3433 3533 4.772100 TCATACTTCACTCAGTGTCATGGA 59.228 41.667 4.28 0.00 34.79 3.41
3444 3544 1.281899 GCCGCTGTCATACTTCACTC 58.718 55.000 0.00 0.00 0.00 3.51
3445 3545 0.458543 CGCCGCTGTCATACTTCACT 60.459 55.000 0.00 0.00 0.00 3.41
3446 3546 0.457853 TCGCCGCTGTCATACTTCAC 60.458 55.000 0.00 0.00 0.00 3.18
3447 3547 0.245266 TTCGCCGCTGTCATACTTCA 59.755 50.000 0.00 0.00 0.00 3.02
3448 3548 0.645868 GTTCGCCGCTGTCATACTTC 59.354 55.000 0.00 0.00 0.00 3.01
3449 3549 0.037697 TGTTCGCCGCTGTCATACTT 60.038 50.000 0.00 0.00 0.00 2.24
3450 3550 0.175760 ATGTTCGCCGCTGTCATACT 59.824 50.000 0.00 0.00 0.00 2.12
3451 3551 0.301687 CATGTTCGCCGCTGTCATAC 59.698 55.000 0.00 0.00 0.00 2.39
3452 3552 0.174617 TCATGTTCGCCGCTGTCATA 59.825 50.000 0.00 0.00 0.00 2.15
3453 3553 0.673333 TTCATGTTCGCCGCTGTCAT 60.673 50.000 0.00 0.00 0.00 3.06
3454 3554 1.291184 CTTCATGTTCGCCGCTGTCA 61.291 55.000 0.00 0.00 0.00 3.58
3455 3555 1.014044 TCTTCATGTTCGCCGCTGTC 61.014 55.000 0.00 0.00 0.00 3.51
3456 3556 1.005037 TCTTCATGTTCGCCGCTGT 60.005 52.632 0.00 0.00 0.00 4.40
3457 3557 1.016130 AGTCTTCATGTTCGCCGCTG 61.016 55.000 0.00 0.00 0.00 5.18
3458 3558 0.737715 GAGTCTTCATGTTCGCCGCT 60.738 55.000 0.00 0.00 0.00 5.52
3459 3559 1.696832 GGAGTCTTCATGTTCGCCGC 61.697 60.000 0.00 0.00 0.00 6.53
3460 3560 0.389817 TGGAGTCTTCATGTTCGCCG 60.390 55.000 0.00 0.00 0.00 6.46
3461 3561 1.667724 CATGGAGTCTTCATGTTCGCC 59.332 52.381 12.47 0.00 37.72 5.54
3462 3562 2.349886 GTCATGGAGTCTTCATGTTCGC 59.650 50.000 18.86 6.53 41.79 4.70
3463 3563 3.369147 GTGTCATGGAGTCTTCATGTTCG 59.631 47.826 18.86 0.00 41.79 3.95
3464 3564 4.391216 CAGTGTCATGGAGTCTTCATGTTC 59.609 45.833 18.86 13.92 41.79 3.18
3465 3565 4.040829 TCAGTGTCATGGAGTCTTCATGTT 59.959 41.667 18.86 3.45 41.79 2.71
3466 3566 3.580022 TCAGTGTCATGGAGTCTTCATGT 59.420 43.478 18.86 0.00 41.79 3.21
3467 3567 4.182339 CTCAGTGTCATGGAGTCTTCATG 58.818 47.826 14.29 14.29 42.28 3.07
3468 3568 3.837146 ACTCAGTGTCATGGAGTCTTCAT 59.163 43.478 4.11 0.00 37.31 2.57
3469 3569 3.006217 CACTCAGTGTCATGGAGTCTTCA 59.994 47.826 0.00 0.00 39.75 3.02
3470 3570 3.256879 TCACTCAGTGTCATGGAGTCTTC 59.743 47.826 4.28 0.00 39.75 2.87
3471 3571 3.234353 TCACTCAGTGTCATGGAGTCTT 58.766 45.455 4.28 0.00 39.75 3.01
3472 3572 2.881734 TCACTCAGTGTCATGGAGTCT 58.118 47.619 4.28 0.00 39.75 3.24
3473 3573 3.006323 ACTTCACTCAGTGTCATGGAGTC 59.994 47.826 4.28 0.00 39.75 3.36
3474 3574 2.968574 ACTTCACTCAGTGTCATGGAGT 59.031 45.455 4.28 4.11 42.32 3.85
3475 3575 3.674528 ACTTCACTCAGTGTCATGGAG 57.325 47.619 4.28 0.00 34.79 3.86
3476 3576 4.772100 TCATACTTCACTCAGTGTCATGGA 59.228 41.667 4.28 0.00 34.79 3.41
3477 3577 4.867047 GTCATACTTCACTCAGTGTCATGG 59.133 45.833 4.28 0.00 34.79 3.66
3478 3578 5.473039 TGTCATACTTCACTCAGTGTCATG 58.527 41.667 4.28 4.78 34.79 3.07
3479 3579 5.718146 CTGTCATACTTCACTCAGTGTCAT 58.282 41.667 4.28 0.00 34.79 3.06
3480 3580 4.559502 GCTGTCATACTTCACTCAGTGTCA 60.560 45.833 4.28 0.00 34.79 3.58
3481 3581 3.923461 GCTGTCATACTTCACTCAGTGTC 59.077 47.826 4.28 0.00 34.79 3.67
3482 3582 3.612717 CGCTGTCATACTTCACTCAGTGT 60.613 47.826 4.28 0.00 34.79 3.55
3483 3583 2.919859 CGCTGTCATACTTCACTCAGTG 59.080 50.000 0.00 0.00 34.45 3.66
3484 3584 2.094494 CCGCTGTCATACTTCACTCAGT 60.094 50.000 0.00 0.00 0.00 3.41
3485 3585 2.534298 CCGCTGTCATACTTCACTCAG 58.466 52.381 0.00 0.00 0.00 3.35
3486 3586 1.404181 GCCGCTGTCATACTTCACTCA 60.404 52.381 0.00 0.00 0.00 3.41
3487 3587 1.281899 GCCGCTGTCATACTTCACTC 58.718 55.000 0.00 0.00 0.00 3.51
3509 3609 3.255888 TGTCTGCTTCTACGTCTTCATGT 59.744 43.478 0.00 0.00 0.00 3.21
3719 3819 1.837439 ACTTGACCAACACACAGAGGA 59.163 47.619 0.00 0.00 0.00 3.71
3730 3830 3.188460 GCGAGCAAAGATAACTTGACCAA 59.812 43.478 0.00 0.00 36.39 3.67
3731 3831 2.742053 GCGAGCAAAGATAACTTGACCA 59.258 45.455 0.00 0.00 36.39 4.02
3732 3832 2.742053 TGCGAGCAAAGATAACTTGACC 59.258 45.455 0.00 0.00 36.39 4.02
3791 3891 3.578716 CCTATTCGGCTTCTCCCTATTCA 59.421 47.826 0.00 0.00 0.00 2.57
3807 3907 2.365617 TGAGAAGGTGATCGGCCTATTC 59.634 50.000 0.00 9.72 34.81 1.75
3902 4002 1.067060 GATTGGTATTGCTTTCGGCCC 59.933 52.381 0.00 0.00 40.92 5.80
3904 4004 3.502191 TTGATTGGTATTGCTTTCGGC 57.498 42.857 0.00 0.00 42.22 5.54
3921 4021 7.577303 ACTCTCCCTTTGCTTTATATCATTGA 58.423 34.615 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.