>input_sequence_38408
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---------ATGGCGCCCCTGGAGTCAGGCTCCTCACAACCCTTCTTCGACAGCAGTGCGATCGACGGCCCGTTCGATAT
CTACGAGTGCGGTACCTTGGCAGGTACCAGAGTTGTGCCAGATCCACCTCCATTACCTGGAACTTCTTATGGCAAGCAGA
GAGCTTCCAGGAAAGCAAAAGAGACTCGTTGTGTTC---ATGTCCCTGAGGAGGTCCAGGACTGCTGGAACAGGCTATTC
TTGGAAGGATATCAAGCCGATGTCCGCGTGTCGACGGATGATGGGAGCGAGATTTTATCGCATTCATGCATTCTTGTGAG
TACAGTTTT-CTGCCTCTCTTCCTGAAATGGCCTCACACCCACTAGAACAGAGGCAGGTTTTGATCTTATGTAAGAAGAT
CTTGGTCTCGTCTCCTACAGGGCATCAGATCTCCCGTTCTGAGAAGTATGCTGGAAGAAGCTAGAGTGGAAGATGGTCTC
AGAAACATCCTGATTTCCGGTGTACCATCTCAAGCAGTCCGTGTCTTCATCAGATTTCTGTATTCTTCACGGTATAAGTG
TGAACTGTATTCTTCATGCCTGAATGTTTGTGTTTCTTCAGAGTTTTCAGTATGGTCTCTTCTTTGACCACAAGAGATAG
CATGACAGAACCTTACATTCATGTCGTTTTCTCTCTTGTGAAGCTTTGAGCAGGATGAGATGAAGAAATACGCCCTTCAT
TTGCTCGTACTCTCTCATGTTTACTCGGTACAATCTCTGAAGATCGTCTGTACCGACCAGCTCGAGAGGTTTTTTCTCGC
TCCTGATAACGCGGTGGACGTTCTACAACTTGCACGGCTATGTGACGCACCAAGGCTCTCACTCATCTGTACTCGTATGA
TCACTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTGATGAGACGGGCCAACCCGAGCCTGGAGCAAGAG
CTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTCTCTGAAACAGAGCATCCTATTATGGCTTAATCACTAGTTGCT
CCACCCCGCAACATCTCGGTTGTTCGAATTACTCGTCTT---------------------------GCTATATGTTATGT
GTATGATCTTCCACATGACGCACACACCTAGAATGCTTATACCTGCTGACGGAATTTTTG-TAGCTGCACATCTACATAC
TGTCATGGTTCATAATCATTGTTCTCAAAACTGAATTTGACACAGAGAAGGCAAGAAAGAGCTAAAAGGCTGGAGGAAAA
GAAGGTTTATCTTCAGCTGTATGAAGCTATGGAAGCTCTTGTTCATATATGCCGAGACGGTTGTAGGACAATTGGTCCCT
GGGATCAGAAACTGAAGGGCAGTCAGGCTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGAGTTGCTGGTGCGCCATTTC
TCGGCATGCAAAATGCGGGTGCCGCGTGGCTGCGCCAACTGCAAGCGCATGTGGCAGCTTCTTGAGCTGCATTCGCGAAT
GTGTTCCACACCAGGCACCTGCAGGGTTCCTCTGTGCAGGTGAGGTCTCTTGTCTTTGTTGGTCAGGATCATTTCATTCA
GACACACAAGTTTTTTAGGTTAA---TACTACGTAGTACAACAGATGCTTGCTTTCATACCATCTCAGAATATATTTTTA
GTCCCTCTTTTCCAAATGGGGCACCCCCTACTAGCTTCATCTCCATAAACTGAAGGTAGGTGGACTTACCAGACAGACAA
ACATAGCAGTTAAAATTCAGAAGACCAGGAAGAAG-----AACACATCAGATTTCTAGTTGCCTTCC---------TCAC
TCACACACCATATGCTCCAGAAAAGAAATTGGACTCAATTGACCACAATAGGAAATTTACTGCTGTACGCATACCATGCC
ACTTCTTCAGCATTTCTGTTGTATTCCCTTCATTGGTATACTATTTGTACATGTTGCAGGCATTTTAAGGATAAAATGCG
GCATCGGAGCAAGAAAGAAGAAATCAAATGGGTCCTATTGGTGTGTAAGGTCCTAGGGAGTAAAGGAACAATTGATTCCG
TCCTAAAAGCGAGAAAAATTTCACCCCTCAAGCCAATTGGAGCTTGA---------------------------------
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--------
>chr3B_1_TraesCS3B01G433400
GGCCCGGGCGGCGCGTCCTTTCCACGTGAAGACATATATGCGTGAGTCGGCTCCGTCCTACTTTTTGCCCTCTCATCACT
TCACAGCCGTGGCG-------------------------GGCAGTGACATGCGGGGCCAGGCCTTCTGTGGGGGACTCGT
GTCAGCCACACGCAGCACGTGGCCCCCTCCCCCCGGCCTGCGTGGGCGTGTGGCCAAGCAGGAAGGACAACACAAGCAGG
CTTCAAAAGCTCTGCAATAGTGGAGACTGAAGAGACGGTAGTGGTGCAGCCCAGCTTCTTCTTTCTCTTCCCGTCGTCGC
TTTTACAGAGAGAGGCTCCGGCGACTCCGACCACTCGAGCACG----ATCTCAGGTGAGCACGCAAGCTTCGATTTGTTC
CAATCCCAAGTCCCCTCTCGCGTCTCTCTTCTTCCCCGTCGATTTTCCCTCTCTGATGGTCCCAAGGACCTGGGAGCCAT
GGCTCTTCTTGAGTGAGGAGCTGAAGAATATCTGAGCGGAGAATCATCTGATCAGCTCAAAATTTGACAACATTTTAGCA
ATTCTCGGTTTCTTTTTTCTGGGGAGTGGAAGTCTCATGGAACGCCTCAGAGTTCAGAAATACTAGTCTGATTCCCTGGT
TTATGGCCTC----TGTGATGTTCAGTTGGACAGGAAATTCTTACAATTTCC---TTCAGGGTTCAGGAGAGAAACA-CA
TGGATGTAATTCTGTGCATCTTTTCCTTCAACTCACTATTAC----------TAGTATGAAGTAACTTCTGAAACAC--A
GTACTCATTAATTAATTTATTTATTATCTGCTGAAGATATCGAGTAATTAGTAATGAATCACTTGCCTTACGTTATGCCT
TTGGTTTCTTCTATCTATTTATAACAACTTCTTCCTGAACCTTGCTTCAAAGAAAGTACTACTTGCGCTGCCGTATGGGC
ACTACAAAAACTTGAGCAGGTTGTGTTCTCAGCTGTCTTCTCTCTTGATCATTTTGGCCTGCAGGGTCAAAGCAGGAGGC
ACACCTTTGATGGCGCCCCTGGAGTCAGGCTCCTCACAACCCTTCTTCGACAGCAGTGCGATCGACGGCCCGTTCGATAT
CTACGAGTGCGGTACCTTGGCAGGTACCAGAGTTGTGCCAGATCCACCTCCATTACCTGGAACTTCTTATGGCAAGCAGA
GAGCTTCCAGGAAAGCAAAAGAGACTCGTTGTGTTC---ATGTCCCTGAGGAGGTCCAGGACTGCTGGAACAGGCTATTC
TTGGAAGGATATCAAGCCGATGTCCGCGTGTCGACGGATGATGGGAGCGAGATTTTATCGCATTCATGCATTCTTGTGAG
TACAGTTTT-CTGCCTCTCTTCCTGAAATGGCCTCACACCCACTAGAACAGAGGCAGGTTTTGATCTTATGTAAGAAGAT
CTTGGTCTCGTCTCCTACAGGGCATCAGATCTCCCGTTCTGAGAAGTATGCTGGAAGAAGCTAGAGTGGAAGATGGTCTC
AGAAACATCCTGATTTCCGGTGTACCATCTCAAGCAGTCCGTGTCTTCATCAGATTTCTGTATTCTTCACGGTATAAGTG
TGAACTGTATTCTTCATGCCTGAATGTTTGTGTTTCTTCAGAGTTTTCAGTATGGTCTCTTCTTTGACCACAAGAGATAG
CATGACAGAACCTTACATTCATGTCGTTTTCTCTCTTGTGAAGCTTTGAGCAGGATGAGATGAAGAAATACGCCCTTCAT
TTGCTCGTACTCTCTCATGTTTACTCGGTACAATCTCTGAAGATCGTCTGTACCGACCAGCTCGAGAGGTTTTTTCTCGC
TCCTGATAACGCGGTGGACGTTCTACAACTTGCACGGCTATGTGACGCACCAAGGCTCTCACTCATCTGTACTCGTATGA
TCACTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTGATGAGACGGGCCAACCCGAGCCTGGAGCAAGAG
CTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTCTCTGAAACAGAGCATCCTATTATGGCTTAATCACTAGTTGCT
CCACCCCGCAACATCTCGGTTGTTCGAATTACTCGTCTT---------------------------GCTATATGTTATGT
GTATGATCTTCCACATGACGCACACACCTAGAATGCTTATACCTGCTGACGGAATTTTTG-TAGCTGCACATCTACATAC
TGTCATGGTTCATAATCATTGTTCTCAAAACTGAATTTGACACAGAGAAGGCAAGAAAGAGCTAAAAGGCTGGAGGAAAA
GAAGGTTTATCTTCAGCTGTATGAAGCTATGGAAGCTCTTGTTCATATATGCCGAGACGGTTGTAGGACAATTGGTCCCT
GGGATCAGAAACTGAAGGGCAGTCAGGCTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGAGTTGCTGGTGCGCCATTTC
TCGGCATGCAAAATGCGGGTGCCGCGTGGCTGCGCCAACTGCAAGCGCATGTGGCAGCTTCTTGAGCTGCATTCGCGAAT
GTGTTCCACACCAGGCACCTGCAGGGTTCCTCTGTGCAGGTGAGGTCTCTTGTCTTTGTTGGTCAGGATCATTTCATTCA
GACACACAAGTTTTTTAGGTTAA---TACTACGTAGTACAACAGATGCTTGCTTTCATACCATCTCAGAATATATTTTTA
GTCCCTCTTTTCCAAATGGGGCACCCCCTACTAGCTTCATCTCCATAAACTGAAGGTAGGTGGACTTACCAGACAGACAA
ACATAGCAGTTAAAATTCAGAAGACCAGGAAGAAG-----AACACATCAGATTTCTAGTTGCCTTCC---------TCAC
TCACACACCATATGCTCCAGAAAAGAAATTGGACTCAATTGACCACAATAGGAAATTTACTGCTGTACGCATACCATGCC
ACTTCTTCAGCATTTCTGTTGTATTCCCTTCATTGGTATACTATTTGTACATGTTGCAGGCATTTTAAGGATAAAATGCG
GCATCGGAGCAAGAAAGAAGAAATCAAATGGGTCCTATTGGTGTGTAAGGTCCTAGGGAGTAAAGGAACAATTGATTCCG
TCCTAAAAGCGAGAAAAATTTCACCCCTCAAGCCAATTGGAGCTTGACGTGTAGTTCGACAGTAATAACGTGAGCAGTGA
CAGTAAGTACAGGTGTGTATCATCTAGGTTTGAGTTGAGTTACAGATGATGGCGACTGCAGAAGGTGCTTTTGCCATGGT
CAATGACTATGCTGGCAGGGGGCTTGACATTCTAGCTTGCACATGGGAGGTGGTTAACATGCGCTTCTACTGACCTCGCC
TACCGCTGCTCTGTTGCTGCAATCTCCTCGATCTTGTCCTCGCCAACTAGGTAGCTCTGCAATTCCAGTGGAAACGTGTT
AATGTTCATGTGTTAGCGCAAGAGTACCTAGGCGAGTAGTCAGCCAACATATCATTGATTACTATGGAGCAGAGAAG-AT
CATTTACCGTTATCCATGACACTGAGTGAAGTATGACAGCGGCGAACATGAAGACTCCATGACACTGAGTGAAGTATGAC
AGCGGCGAACATGAAGACGTAGAAGCAGACAGTGGCAAAGGTGCCGGTCGGGAGCATCCATGTGAGGTGGAGAACCACTA
GTAGTGTCAGTCCAAGAATCCCTAGGCGAGCAGTGAGCCTGCATACCGCCTGCTCGAAGTTGGACTTGCCGTGCAGTCCA
CATAAGAGCCCCACGCTAGCCAGCACCCAGATCAAAGCGAAGCTCAGCACAAGGATGATCCTCTGTGTGTTGGTCAAGTT
ATCTTTGCTCGCAGCGCGCTCCGCGGTGGAGGGCAAGAGGGAAAGGGATCTGAATAGGGAGAAGCCGAATAGGCCGATCA
CCTTCTCAACGCCAACTGAGTCAAGCTGCACAATAGCGAAAACATTACTGTTATGCCACATACCATATCAAATTCTGTCA
AGGGCCGAAAGCAATACCAATCAATGATATAAAGCAAAGGGAGAGTTAAGATATCGATAGTACTGCTTTCAGCTAAACTA
ACTACTCTCTAAGAACAGAAACCATGCAATCTGGGTACTGTAGTAAACAGCAAGTAACTTAATAGCTTACAGATTTAAAA
AAAAAAAC
>chr3A_1
GGCCCGGGCGGCGCGTCCTTTCCACGTGAGGACATATGTGTGAGTCAC--CTCCGTCCTACCTTTTGCCCTCTCGTCGCT
TCACAGCCGTGGCGGGCACCGAAGACGCACCTGCCTCGTGGCAGTGACATGCGGGGCCGGGCCTTCTGTGGGGGACTCGT
GTCAGCCACACACAGCACGTGGCCCCCTCCCCCCAGCCTGCGTGGGCGTGTGGCCAAGCAGGAAGGTAGC--CAAGCAGG
CTTCAAAAGCTTTCGAG-AGTGGAGACTGAAGGGACGGTGGTGGTGCTGCAGCCCAGCTTCTTTCTCTTCCCGTCGTCGC
TTTTACAGAGA----CTCCGGCGACTCCGACCACTCGAGCACG----ATCTCAGGTGAGCACGCA-GCTGCGATTTGCTC
CAGT-CCAAGTCCCCTCTCGAGTCTCCCTTCTTCCCCGTCGGTTTCCCCTCTCTGATGGTCCAAAGGACCTGGGAGCCAT
AGCTCTTCTTCAGTGAGGAGCTGAAGAATATCTGAGCTGAGAATCATTTGATAAGCTCAAAATTTGAGAGCCGTTTAGAA
AT-------------TTGCTGGGGAGTGGAAGTCTCATGGAACGCCTCAGAGTTCAGAAA---TAGTCTGATTCCCTGGT
TTATGGCCTT----TGTGATGTTCTTCCGGGCAGCAAATTCTTACAATTTCC---CTCAGAGTTCAGGAAAAAAACAACA
TGGATGTAATTATGTGCATCTTTTCCTTGAACCCACTATTACTTATTACTAGTAGTATGAAGTAACTTCAGAAATAC--A
GTACTCATTAATTTATTTATTTATTATTTGCCCAAGATATCGAGTAATTAACAGTGAATCACTTGCCTTACGTTATGCCT
TTGGGTTCTTCCATCTATTTATTACAACTTCTTCCTGAACCTTCCTTCAAGGAAAGTACTACTTGCGCTGCCGTATGGGT
ACTACAAAAACTCGAGTAGGTTGTGGTTTCAGCTCTCTTCTCTCTTGATCATTTGGACTTGCAGGGTCAAAGCAGGAGGC
ACACCTT-GATGGCGCCCCTGGAGTCAAGCTCCTCACAGCTCTTCTTCGACAGCA---------------CGTTCGATGT
CTACGACTGCGGTACCTTGGCAGGCACCAGAGTCGTGCCAGATCCACCTCCATTACCTGGAACTTCTTATGGCAAGCAGA
GAAGTTCCAGGAATGCAAAAGAGGCTCGTTGTGTTCATGATGTCCCTGAGGAGGTCCGGGACTGCTGGAACAGGCTTTTC
TTGGAAGGATATCAAGCCGATGTCCGCGTATCGACGGATGATGGAAGCGAGATTTTATCGCATTCCTGCATTCTTGTGAG
TGCAG-TTTTCTGATTCCCTTCCTGTAACTGCCTCACATTCATTAGAACAGAGGCAGGTTTTAATCTTATGTAAGAAGAT
CTTGATCACGTCTTTTACAGGGCATCAGATCTCCCGTTCTAAGAAGTATGTTGGAAGAAGCTAGAGTGGAAGATGGTTTC
AGAAACATCCTGATTTCTGGTGTCCCATCTGAAGCAGCCCGTGTCTTCATCAGGTTTCTGTATTCTTCACGGTATGAATG
TGGACTGTATTCTTCATGCCTGAATGTTTATGTTTCTTCGGAGTTTTCAGTATGGTCTTCTTTGACTCACACAGTCTAGC
CTTG----------ACATTCGTGCCGTTTTCTCTCTGGTGAAGCTTTGAGCAGGATGAGATGAAGAAATATGCCCTCCAT
TTGCTCGTACTCTCTCATGTTTTCTCGGTACCATCGCTGAAGATCGTCTGCACCGACCAGCTCGAGAGGTTTTCTCTTGC
TCCTGATAACGTGGTGGACGTTCTACAACTGGCTAGACTCTGTGACGCGCCAAGGCTCTCGCTCATGTGTACTCGCATGA
TCACTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTCATGAGACGGGCCAACCCAAGCCTGGAGCAAGAG
CTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTCTCTGAAACAGAGCATCCTAAAATGGCTTAATCACTAGTTACT
CCACCTCGCAACATCTCAGTTGTTCGAATTACTCGTCTATCTATAT--------------------------TGTTATGT
GTATGATCTTCCACATGACGCACACACTTAGCATGCTTATACCCGCTGTCAGAAAATTTTATAGCTGCACATCTACATAT
TGTCATGGTTCATACTCATCATTCTCACAACTGAATTTGATGCAGAGAAGGCAAGAAAGAGCTAAAAGGATGGAGGAAAA
GAAGGTTTATCTTCAGCTGTATGAAGCTATGGAAGCTCTTGTTCATATATGCAGAGACGGTTGTAGGACGATTGGCCCCT
GGGATCAGAAACTGAAGGGCAGTCAGGTTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGAGTTGCTGGTGCGCCATTTC
TCGGCATGCAAAATGCGTGTTCCGCGTGGCTGCTCCAACTGCAAGCGTATGTGGCAGCTTCTTGAGCTGCATTCGCGAAT
GTGTTCTACACCGGGCACCTGCAGGGTTCCTCTATGCAGGTGAGGTCTCTTGTCTTTGTTGGCCAGGATCATTTCATTCA
GACACACAAGTTTTTTAGGTTAATACTACTACGTAGTACAACAGATGTTTGCTTTCATAGCATCTCAGAATATATTTTTA
GTCCCCATTTTCCAAATGGGGCACCCCCTCCTAGCTTCATCTCCATAAACTGAAGGTAGCTGGACTTACCAGACAGACAA
ATATAGCAGTTAAAATTCAGAAGACCAGGAAGAAG-----AACACACCAGATTTCTAGTTGCCTTCC---------TCAC
TCGCCCACCATATGTTCCACAAAGGAAATTGAACTCAATTGACCGCAATAGGAAATTTACTGCTGTACGCATACCATGCC
ACTTCTTCAGCATTTCTGTTGTATTCACTTCATTGGTATACTATTTGTACATGTTGCAGGCATTTTAAGGATAAAATGCG
GCATCGGAGCAAGAAAGAAGAACTCAAATGGGTCCTATTGGTGTGTAAGGTCCTAGGGAGTAAAGGAACAATTGATTCCG
TCCTAAAAGCGAGAAAAATCTCACCCCTCAAGCCAATTGGAGCTTGACGTGTAGTTCGACAGTAATAACGTGAGCACTGA
CAGTAAGTACAGGTGTGTATCATCTAGGTTTGAGTTGAGTTACAGATGATGGCGAATGCAGAAGGTGCTTTTGCCACGGT
CGACGACTATGCTGGCAGGGGGCTTGCAC-TCTAGCTTGCACATGGGAGGTGGTTAACATGCGCTTTTACTGACCTCGCC
TACCGCTGCTCTGTTGCTGCAATCTCCTCGATCTTGTCCTCGCCAACTAGGCAGCTCTGCAATTCCAGTGGAAACGTGTT
AATATTCATGTGTTAGCGCAAGAGTACCTAGGCGAGTAGTCAGCCAGCATATCGATGATTACTATGGAGCAGAGAAGAAT
CATTTACCGTTACCCATGACACTA-------------------------------------------AGTGAAGTATGAC
AGCGGCGATCATGAAGACGTAGAAGCAG--AGTGGCAAAGGTGCCGGTCGGGAGCATCCATGTGAGGTGGAGAACCACTA
GTAGTGTCAGTCCAAGAATCCCTAGGCGAGCAGTGAGCCTGCATACCGCCTGCTCGAAGTTGGACTTGCCGTGCAGTCCA
CATAAGAGCCCCACGCTAGCCAGCACCCAGATCAAAGCGAAGCTCAGCACGAGGATGACCCTCTGTGTGCCTGTCAAGTT
ATCTTTGCTCGCGGCGCGCTCTGCGGTGGAGGGCAAGAGGGAAAGGGATCCGAATAGGGAGAAACCAAATAGGCCGATCA
CCTTCTCAACGCCAACTGAGTCAAGCTGCACAATAGCGAAAACATTACTGTTATGCCACATACCATATCAAATTCTGTCA
AAGACCGAAAGCAATACCAACCAATGATATAAAGCAAAGGGAGAGTTAAGATATCGATAGTACTGCTTTCAGCTCAACTA
ACTACTCTCTAAGAACAGAAACCATGCAATCTGGGTACTGTAGTAAACAGCAAGTAACTTAATAGCTTACAGATTAAAAA
AAAA----
>chr3D_306
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----------AGAGACTCCGGCGACTCCAGTCCATCGCTCGTGGAAAATCTCAGGTGAGCACGCA-GCTGTGGCTTGCTC
CAAT-CCAATTTCCATCTCGCGTCTCCCTTCTTCCCCGTCGATTTCCCCTCTCTGATGGTCCCAGGGACAGGGGAGCCAT
AGCTCTT---GAGTGAGGAGCTGAAGCGTATTTGATCAGCTCGAGTTTGAGATACTTTC-----------------AGCA
ATTCTTGGTTTCTACTTTCCGGGGACTGGAATTCTCATGGGCCACCCACATAACTCAGAAATTTCCATGTTAACATCTTC
TTTTATGGACCTCATGTGATGTTCTTCTGGGCAGGAAGTTCTTACAATTTCCAGCCTCAGAGTTCAGGAAAGAAACA-CA
TGGATGTAATTCTGTGCATATTTTCCTTCAACTCACTATTT--------TAGTATGAAGTAGTAACTTCAGAAACACGGA
GTTCTCATTAATTTATTTGTTTATTATGTGCTGAAGATATCGAGTAATTAGTAATGAATCACTTGCCTTACGTTATGCCT
TTGGTTTCTTCCATCTATTTATAACAACTTCTTCCTGAACCTTGCTTCAAAGGAAGTACTACTTGCGGTGCCATATGGGT
ACTACAAAAACTCGAGTAGGCTGTGTTTTCAGCTCTCTTCTCTCTTGATCATTTTGGCTTGCAGGGTCAAAGCAGGAGGC
ACACCTT-GATGGCGCCCCTGGAGTCAGGCTCCTCACAGCTCTTCTTCGACAGCAGTGCGATCGACGGCCCGTTCGATGT
CTACGAGTGCGGTACCTTGGCAGGCACCAGAGTCGTGCCAGATCCACCTCCA---CCTGGAACCTCTTATGGCAAGCAGA
GAAGTTCCAGGAATGCTAAAAAGGCTCGTCGTGTTC---ATGGCTCTGAGGAGGTCGAGGACTGCTGGAACAGGCTATTC
TTGGAAGGATATCAAGCCGATGTCCGCGTATCGACGGGCGATGGCAGCCAGATCTTATCGCATTCGTGCATTCTTGTGAG
TACAGTTTTTATGATTCTTTTCCTGTAATGGCCTCACACTC-CTAGAACAGAGGCAGGTTTTGATATTATGTAA-----T
CTTGACCTCGTCTCCTACAGGGCATCAGATCTCCGGTTCTGAGAAGTATGTTGGAAGAAGCTAGAATTGAACATGGTTTC
AGAAACATCCTGATTTCCGGTGTCCCATCAGAAGCAGTCCGTGTCTTCATCAGATTTCTGTATTCTTCACGGTATGAATG
TGGGCTGTG---TTCATGCCTGAATGTTTATGTTTCTTCAGAGTTTTCAGTATG--CTCTTCTTTTACTACAAGATATAG
CTTGACAGAACCTTGTCATCTATTTTGTTC--CTCTGGTGAAGCTTTGAGCAGGGTGAGATGAAGAAGTATGCCCTTCAT
TTGCTCGTACTCTCTCATGTTTTCTCGGTACAATCGCTGAAGATCGTCTGCACCGACCAGCTCGAGAGGTTTTTTCTTGC
TCCTGATAACGTGGTGGACGTTCTACAACTGGCTAGACTCTGTGACGCACCAAGGCTCTCGCTCATCTGTACCCGTATGA
TCGTTGGAGATTTCAAGACCATCTCTCTGTCAGAAGGGTGGAAAGTGATGAGACGGGCCAACCCAAGCCTGGAGCAAGAG
CTTCTTGAGTTTCTTGTTGAAGTGGACACAGTGAGTTATCTGAAACAGAGCATCCTAATATGGCTTAATCACTAGTAACT
CCACCTCGCAACATCTCAGTTGTTCGAATTACTCGTCTCGCTACATGTTATGTCTATAATCGTCTCGCTATATGTTATGT
CTATAATCTTCTACATGACGCACACACTTAGAATGCTTATACCTGCTGTCAGAAAATTGTATAGCTGCACA---ACTTAC
TGTCATGGTTCATACTCATCGTTCTTAAAACTGAATTTGACGCAGAGAAGGCAAGAAAGAGCTAAAAGGATGGAGGAAAA
GAAGGTTTATCTTCAGTTGTATGAAGCTATGGAAGCTCTTGTTCATATATGCCGAGACGGTTGTAGGACGATTGGCCCCT
GGGATCAGAAACTCAAGGGCAGTCAGGTTGTTTGCAAGTTTCCTGCCTGCAAGGGCATCGAGTTGCTCGTGCGCCATTTC
TCGGCATGCAAAAAACGTGTGCCTCGTGGCTGCGCCAACTGCAAGCGCATGTGGCAGCTTCTTGAGCTGCATTCTCGAAT
GTGTTCCACACCAGACACCTGCAGGGTTCCTCTATGCAGGTGAGG--TCTTGTCTTTGTTGGTCAGGATCATTTCATTTA
GACACACAAGTTTTCTAGGTTAATAC-------------AACAGATGTTTGCTTTCATAGCATTTCAGAATATATTTTTA
GTACCCCTTTTCCAAAAGGGGCGCCCC-TCCTAGCTTCATCTCCATAAACTGAAGGTAGGTGGACTTAGCGGACAGACAA
ACATCACAATTAAAATTCAGAAGACTAGGGAGAAGAAGCTAACACATCAGATTTCTAGCTGCCTTCCATCTTTTTCTCAC
TCACCCACCAAATCCCGCAAAAGG------------AATTGACCGCAATAGGAAATTTACTGTCGTACGCATACCGTGCC
ACTTCTTCAGCATTTCTGTTATATTCACTTCACGGGTATACTATTTGTACATGTTGCAGGCATTTTAAGGATAAAATATG
GCATCGGAGCAAGAAAGAAGAAATCAAATGGAACATATTGGTGTGTAAGGTCCTAGAGAGCAATGCAACAAGCACATCCA
TCCTAAAAATGAGGAAAACATCATCCTTGATGCCGAATGAAACTTGGCATATAGTTCAACAGTAATAAC-----------
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>SNPs
-----------------------------S-------S--S-S-SSS-SS-----------S------------S--S--
----------------------------------------------------------S---------------------
-----------S----------------------S-------------------------------SSSSSS--------
-----------S-SS-SS--------------S------S-------S--SSSS-SS-----------------------
--------------S--------------------------------------------------S---S-------S--
----S---------------------S------------------S----------------------------------
S------------------------------------S---------S----S--------------S-S-SS-------
-----S-------SS---------------------------------------------SSS-----------------
------------------------SSS---S------------------------S----S--------S----------
---------------------------------------------------------------------S----------
-------------S-------------S----------------------------------------------------
-----------S-------------------------------------------------------------------S
------------S---S----------S------S-----------------------S---------------------
-------S------------------------------S-S-------------------------------------S-
------------------------S--------S----------------------------------------------
--SS---------S---------S--------------------------------------------------------
-----------------------------S--------------S--------------------S--------------
-------------SS----------S-------------S----------------------------------------
----S---------------------------------------------S--------------------------S--
-----------------------S------S--------------------------------------------S-S--
--S--------------------------S-----------------------------------S--S------S----
-S------------------S---------------S---------------------------------S---------
----------------------S------------S--------------S--------------------------S--
-----------S------------------S--SS-S--S--------------------S-------------------
----------------------------------------------------------------S---------------
---------------------------------------------------------S-------------------S--
-----S-----------S--------------------S-----------------------------------------
---------------------------S--------------------S-S---SS---S--------------------
--------------S----S---------------------S---------------------------S----------
---------------------------------------------------------------------S-----S----
---------------------------S----------------------------------------------------
-----------------S--------------------------------------------------------------
---------------------------------S----------------------------------------------
-----------------------------------------------S-----------S--------------------
-----S-----------------------S--------------------------------------------------
--------------------------------------------------------------------------------
----S--------------S---S-------S------------S-----------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
-------------------S--------------------------------------------------------S---
-------------------------------------------------------S--------------------S---
-S-S----------------------SSSS------------------------------------S-------------
---------------------------------------------------S----------------------------
---S------------------------------------------S------SS-------------------------
------------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
--------S-------------------SS--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-------S----------SSS--------
------------S--------S----------------------------S------------S--S-------------
--------------------------------------------------------------------------------
-S-S----------------S-----------------------------------------------------S-----
---------------------------------------------------------------------------S----
----SSSS
>forward_398
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----------------------------------------------------------GCACGCAAGCTTCGATTTGT--
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>reverse_1544
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-----------------------ACCATCTCAAGCAGTCCGTG-------------------------------------
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>forward_1081
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---------------------GAGTCAGGCTCCTCACAACC---------------------------------------
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>reverse_2594
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---------------------------------GTGCAGGTGAGGTCTCTTGT---------------------------
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>forward_1400
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--------------------TCCTGAAATGGCCTCACACC----------------------------------------
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>reverse_3282
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-AATGACTATGCTGGCAGGGG-----------------------------------------------------------
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--------
