Multiple sequence alignment - TraesCS3B01G429300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G429300 chr3B 100.000 2654 0 0 1 2654 667854954 667857607 0.000000e+00 4902
1 TraesCS3B01G429300 chr3B 93.248 311 19 2 2344 2654 13459089 13458781 8.660000e-125 457
2 TraesCS3B01G429300 chr3B 85.714 455 37 11 2227 2654 64479658 64479205 3.110000e-124 455
3 TraesCS3B01G429300 chr3B 95.376 173 6 1 2061 2233 169427635 169427805 9.360000e-70 274
4 TraesCS3B01G429300 chr3A 94.358 1223 57 7 843 2059 644779948 644781164 0.000000e+00 1866
5 TraesCS3B01G429300 chr3A 87.500 120 15 0 962 1081 644696507 644696626 3.560000e-29 139
6 TraesCS3B01G429300 chr3D 92.242 1289 62 16 788 2059 506160828 506162095 0.000000e+00 1792
7 TraesCS3B01G429300 chr3D 97.126 174 5 0 2060 2233 101562887 101562714 7.180000e-76 294
8 TraesCS3B01G429300 chr1B 84.490 677 82 19 58 722 688402374 688401709 0.000000e+00 647
9 TraesCS3B01G429300 chr1B 89.908 109 11 0 2125 2233 624670308 624670200 9.900000e-30 141
10 TraesCS3B01G429300 chr2B 83.772 684 74 29 58 716 14614132 14614803 4.860000e-172 614
11 TraesCS3B01G429300 chr2B 83.793 617 73 19 112 716 154188809 154188208 6.420000e-156 560
12 TraesCS3B01G429300 chr2B 80.220 728 79 33 4 716 642447867 642448544 1.100000e-133 486
13 TraesCS3B01G429300 chr2B 86.830 448 30 10 2233 2654 690938125 690937681 8.600000e-130 473
14 TraesCS3B01G429300 chr2B 93.569 311 19 1 2344 2654 787544049 787544358 1.860000e-126 462
15 TraesCS3B01G429300 chr2B 93.770 305 18 1 2344 2648 787510538 787510841 8.660000e-125 457
16 TraesCS3B01G429300 chr2B 84.524 336 38 11 1 331 32066799 32066473 1.190000e-83 320
17 TraesCS3B01G429300 chr2B 95.402 174 6 1 2060 2233 411495392 411495563 2.600000e-70 276
18 TraesCS3B01G429300 chr2B 90.984 122 9 2 2229 2349 758929489 758929369 2.110000e-36 163
19 TraesCS3B01G429300 chr2B 90.678 118 9 2 2233 2349 216717862 216717746 3.540000e-34 156
20 TraesCS3B01G429300 chrUn 82.407 756 82 33 1 716 345775541 345774797 1.750000e-171 612
21 TraesCS3B01G429300 chr4B 82.082 759 81 34 1 716 578345666 578346412 4.890000e-167 597
22 TraesCS3B01G429300 chr4B 93.910 312 16 3 2343 2654 113883511 113883819 4.000000e-128 468
23 TraesCS3B01G429300 chr4B 91.597 119 10 0 2231 2349 619599137 619599255 5.880000e-37 165
24 TraesCS3B01G429300 chr6B 83.259 669 87 19 63 716 9021131 9021789 2.280000e-165 592
25 TraesCS3B01G429300 chr6B 82.840 676 83 25 63 716 198914246 198913582 2.290000e-160 575
26 TraesCS3B01G429300 chr6B 95.977 174 7 0 2060 2233 420748390 420748217 1.560000e-72 283
27 TraesCS3B01G429300 chr7B 82.127 677 89 19 63 714 496887906 496887237 3.860000e-153 551
28 TraesCS3B01G429300 chr7B 92.742 124 9 0 2226 2349 630889690 630889813 2.100000e-41 180
29 TraesCS3B01G429300 chr5A 84.965 572 54 25 152 716 322134079 322134625 3.860000e-153 551
30 TraesCS3B01G429300 chr6D 93.291 313 19 2 2343 2654 464142470 464142159 6.690000e-126 460
31 TraesCS3B01G429300 chr6D 87.234 141 12 6 2212 2349 225141924 225142061 3.540000e-34 156
32 TraesCS3B01G429300 chr5B 92.949 312 22 0 2343 2654 30869191 30869502 3.110000e-124 455
33 TraesCS3B01G429300 chr5B 97.701 174 4 0 2060 2233 327703950 327704123 1.540000e-77 300
34 TraesCS3B01G429300 chr2D 92.652 313 22 1 2343 2654 37871703 37872015 1.450000e-122 449
35 TraesCS3B01G429300 chr1D 98.266 173 3 0 2061 2233 490355899 490356071 1.190000e-78 303
36 TraesCS3B01G429300 chr1D 91.453 117 10 0 2233 2349 320981941 320981825 7.600000e-36 161
37 TraesCS3B01G429300 chr5D 91.597 119 9 1 2231 2349 470036865 470036982 2.110000e-36 163
38 TraesCS3B01G429300 chr5D 91.379 116 10 0 2234 2349 294049167 294049052 2.730000e-35 159
39 TraesCS3B01G429300 chr7D 90.083 121 12 0 2229 2349 593423662 593423782 9.830000e-35 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G429300 chr3B 667854954 667857607 2653 False 4902 4902 100.000 1 2654 1 chr3B.!!$F2 2653
1 TraesCS3B01G429300 chr3A 644779948 644781164 1216 False 1866 1866 94.358 843 2059 1 chr3A.!!$F2 1216
2 TraesCS3B01G429300 chr3D 506160828 506162095 1267 False 1792 1792 92.242 788 2059 1 chr3D.!!$F1 1271
3 TraesCS3B01G429300 chr1B 688401709 688402374 665 True 647 647 84.490 58 722 1 chr1B.!!$R2 664
4 TraesCS3B01G429300 chr2B 14614132 14614803 671 False 614 614 83.772 58 716 1 chr2B.!!$F1 658
5 TraesCS3B01G429300 chr2B 154188208 154188809 601 True 560 560 83.793 112 716 1 chr2B.!!$R2 604
6 TraesCS3B01G429300 chr2B 642447867 642448544 677 False 486 486 80.220 4 716 1 chr2B.!!$F3 712
7 TraesCS3B01G429300 chrUn 345774797 345775541 744 True 612 612 82.407 1 716 1 chrUn.!!$R1 715
8 TraesCS3B01G429300 chr4B 578345666 578346412 746 False 597 597 82.082 1 716 1 chr4B.!!$F2 715
9 TraesCS3B01G429300 chr6B 9021131 9021789 658 False 592 592 83.259 63 716 1 chr6B.!!$F1 653
10 TraesCS3B01G429300 chr6B 198913582 198914246 664 True 575 575 82.840 63 716 1 chr6B.!!$R1 653
11 TraesCS3B01G429300 chr7B 496887237 496887906 669 True 551 551 82.127 63 714 1 chr7B.!!$R1 651
12 TraesCS3B01G429300 chr5A 322134079 322134625 546 False 551 551 84.965 152 716 1 chr5A.!!$F1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
760 848 0.107831 TGGTACCAATATCGCAGGCC 59.892 55.0 13.6 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2464 2581 0.027194 TATTCGTCGCGAGAACCGAG 59.973 55.0 10.24 0.0 45.01 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 65 2.635714 ACTGAACGAAAAACCCGAACT 58.364 42.857 0.00 0.00 0.00 3.01
147 166 2.703416 AGCAAAATCATGACTCTCGCA 58.297 42.857 0.00 0.00 0.00 5.10
530 591 5.838531 TTTTGTTCGAAAAGCTAGGGAAA 57.161 34.783 0.00 0.00 0.00 3.13
542 603 2.557056 GCTAGGGAAAACCAGTGGAAAC 59.443 50.000 18.40 4.09 43.89 2.78
543 604 2.838637 AGGGAAAACCAGTGGAAACA 57.161 45.000 18.40 0.00 43.89 2.83
544 605 3.328535 AGGGAAAACCAGTGGAAACAT 57.671 42.857 18.40 0.00 42.90 2.71
545 606 3.230976 AGGGAAAACCAGTGGAAACATC 58.769 45.455 18.40 6.42 42.90 3.06
546 607 2.030274 GGGAAAACCAGTGGAAACATCG 60.030 50.000 18.40 0.00 40.74 3.84
579 652 5.559225 CGGGAAAAATTGTTTAAAAAGCCGG 60.559 40.000 0.00 0.00 0.00 6.13
583 656 8.132362 GGAAAAATTGTTTAAAAAGCCGGAAAT 58.868 29.630 5.05 0.00 0.00 2.17
607 695 5.163893 TGCGTGCGGAAAAATAAAACAAAAA 60.164 32.000 0.00 0.00 0.00 1.94
608 696 5.904630 GCGTGCGGAAAAATAAAACAAAAAT 59.095 32.000 0.00 0.00 0.00 1.82
644 732 2.995450 GCGCGACACGTGACGAATT 61.995 57.895 37.05 9.29 46.11 2.17
657 745 2.447887 CGAATTGCTGAGAGCGCGT 61.448 57.895 8.43 0.00 46.26 6.01
686 774 0.459237 CTGATCGTTGCGAGGCTTCT 60.459 55.000 0.00 0.00 39.91 2.85
716 804 3.532542 GCTCGTTAATTAGTTGCTCCCT 58.467 45.455 0.00 0.00 0.00 4.20
719 807 3.516300 TCGTTAATTAGTTGCTCCCTCCA 59.484 43.478 0.00 0.00 0.00 3.86
722 810 6.053005 CGTTAATTAGTTGCTCCCTCCATAA 58.947 40.000 0.00 0.00 0.00 1.90
723 811 6.540914 CGTTAATTAGTTGCTCCCTCCATAAA 59.459 38.462 0.00 0.00 0.00 1.40
724 812 7.466860 CGTTAATTAGTTGCTCCCTCCATAAAC 60.467 40.741 0.00 0.00 0.00 2.01
725 813 2.403252 AGTTGCTCCCTCCATAAACG 57.597 50.000 0.00 0.00 0.00 3.60
726 814 1.065418 AGTTGCTCCCTCCATAAACGG 60.065 52.381 0.00 0.00 0.00 4.44
727 815 0.254747 TTGCTCCCTCCATAAACGGG 59.745 55.000 0.00 0.00 39.41 5.28
728 816 1.148498 GCTCCCTCCATAAACGGGG 59.852 63.158 0.00 0.00 38.55 5.73
729 817 1.342672 GCTCCCTCCATAAACGGGGA 61.343 60.000 0.00 0.00 44.76 4.81
730 818 1.209621 CTCCCTCCATAAACGGGGAA 58.790 55.000 0.00 0.00 46.00 3.97
731 819 1.774856 CTCCCTCCATAAACGGGGAAT 59.225 52.381 0.00 0.00 46.00 3.01
732 820 2.174854 CTCCCTCCATAAACGGGGAATT 59.825 50.000 0.00 0.00 46.00 2.17
733 821 2.583566 TCCCTCCATAAACGGGGAATTT 59.416 45.455 0.00 0.00 44.10 1.82
734 822 3.787013 TCCCTCCATAAACGGGGAATTTA 59.213 43.478 0.00 0.00 44.10 1.40
735 823 3.887110 CCCTCCATAAACGGGGAATTTAC 59.113 47.826 0.00 0.00 41.25 2.01
736 824 4.528920 CCTCCATAAACGGGGAATTTACA 58.471 43.478 0.00 0.00 31.58 2.41
737 825 4.337274 CCTCCATAAACGGGGAATTTACAC 59.663 45.833 0.00 0.00 31.58 2.90
738 826 4.919793 TCCATAAACGGGGAATTTACACA 58.080 39.130 0.00 0.00 0.00 3.72
739 827 4.701171 TCCATAAACGGGGAATTTACACAC 59.299 41.667 0.00 0.00 0.00 3.82
740 828 4.437659 CCATAAACGGGGAATTTACACACG 60.438 45.833 0.00 0.00 0.00 4.49
741 829 2.259266 AACGGGGAATTTACACACGT 57.741 45.000 0.00 0.00 34.25 4.49
742 830 1.515081 ACGGGGAATTTACACACGTG 58.485 50.000 15.48 15.48 0.00 4.49
743 831 0.800012 CGGGGAATTTACACACGTGG 59.200 55.000 21.57 11.39 34.19 4.94
744 832 1.878948 CGGGGAATTTACACACGTGGT 60.879 52.381 21.57 16.66 34.19 4.16
745 833 2.612471 CGGGGAATTTACACACGTGGTA 60.612 50.000 21.57 15.64 34.19 3.25
746 834 2.743664 GGGGAATTTACACACGTGGTAC 59.256 50.000 21.57 7.14 34.19 3.34
747 835 2.743664 GGGAATTTACACACGTGGTACC 59.256 50.000 21.57 4.43 34.19 3.34
748 836 3.401182 GGAATTTACACACGTGGTACCA 58.599 45.455 21.57 11.60 34.19 3.25
749 837 3.814283 GGAATTTACACACGTGGTACCAA 59.186 43.478 18.31 11.12 34.19 3.67
750 838 4.456566 GGAATTTACACACGTGGTACCAAT 59.543 41.667 18.31 4.94 34.19 3.16
751 839 5.642919 GGAATTTACACACGTGGTACCAATA 59.357 40.000 18.31 0.00 34.19 1.90
752 840 6.316890 GGAATTTACACACGTGGTACCAATAT 59.683 38.462 18.31 1.54 34.19 1.28
753 841 6.913873 ATTTACACACGTGGTACCAATATC 57.086 37.500 18.31 2.76 34.19 1.63
754 842 2.883574 ACACACGTGGTACCAATATCG 58.116 47.619 18.31 18.22 34.19 2.92
755 843 1.591158 CACACGTGGTACCAATATCGC 59.409 52.381 18.31 1.50 0.00 4.58
756 844 1.205179 ACACGTGGTACCAATATCGCA 59.795 47.619 18.31 0.00 0.00 5.10
757 845 1.858458 CACGTGGTACCAATATCGCAG 59.142 52.381 18.31 8.56 0.00 5.18
758 846 1.202486 ACGTGGTACCAATATCGCAGG 60.202 52.381 18.31 0.00 0.00 4.85
759 847 1.226746 GTGGTACCAATATCGCAGGC 58.773 55.000 18.31 0.00 0.00 4.85
760 848 0.107831 TGGTACCAATATCGCAGGCC 59.892 55.000 13.60 0.00 0.00 5.19
761 849 0.396811 GGTACCAATATCGCAGGCCT 59.603 55.000 7.15 0.00 0.00 5.19
762 850 1.202770 GGTACCAATATCGCAGGCCTT 60.203 52.381 0.00 0.00 0.00 4.35
763 851 2.038033 GGTACCAATATCGCAGGCCTTA 59.962 50.000 0.00 0.00 0.00 2.69
764 852 2.256117 ACCAATATCGCAGGCCTTAC 57.744 50.000 0.00 0.00 0.00 2.34
765 853 1.202770 ACCAATATCGCAGGCCTTACC 60.203 52.381 0.00 0.00 39.61 2.85
766 854 1.202758 CCAATATCGCAGGCCTTACCA 60.203 52.381 0.00 0.00 43.14 3.25
767 855 2.571212 CAATATCGCAGGCCTTACCAA 58.429 47.619 0.00 0.00 43.14 3.67
768 856 2.948979 CAATATCGCAGGCCTTACCAAA 59.051 45.455 0.00 0.00 43.14 3.28
769 857 2.032680 TATCGCAGGCCTTACCAAAC 57.967 50.000 0.00 0.00 43.14 2.93
770 858 0.679960 ATCGCAGGCCTTACCAAACC 60.680 55.000 0.00 0.00 43.14 3.27
771 859 2.340328 CGCAGGCCTTACCAAACCC 61.340 63.158 0.00 0.00 43.14 4.11
772 860 1.076727 GCAGGCCTTACCAAACCCT 59.923 57.895 0.00 0.00 43.14 4.34
773 861 0.965866 GCAGGCCTTACCAAACCCTC 60.966 60.000 0.00 0.00 43.14 4.30
774 862 0.404040 CAGGCCTTACCAAACCCTCA 59.596 55.000 0.00 0.00 43.14 3.86
775 863 1.154430 AGGCCTTACCAAACCCTCAA 58.846 50.000 0.00 0.00 43.14 3.02
776 864 1.501604 AGGCCTTACCAAACCCTCAAA 59.498 47.619 0.00 0.00 43.14 2.69
777 865 2.090999 AGGCCTTACCAAACCCTCAAAA 60.091 45.455 0.00 0.00 43.14 2.44
778 866 2.701423 GGCCTTACCAAACCCTCAAAAA 59.299 45.455 0.00 0.00 38.86 1.94
826 914 2.569404 TGCAAACCCAAATACCCCAATC 59.431 45.455 0.00 0.00 0.00 2.67
834 922 1.834540 AATACCCCAATCCCTCCCTC 58.165 55.000 0.00 0.00 0.00 4.30
837 928 0.479589 ACCCCAATCCCTCCCTCAAA 60.480 55.000 0.00 0.00 0.00 2.69
858 949 2.694829 AATATCCCTCGCGCGGTCAC 62.695 60.000 31.69 0.00 0.00 3.67
963 1063 1.078708 TTGCTCCCGATCGGTTTCC 60.079 57.895 31.22 16.97 0.00 3.13
973 1073 2.337532 CGGTTTCCGTGGTCTCGT 59.662 61.111 0.00 0.00 42.73 4.18
974 1074 1.731969 CGGTTTCCGTGGTCTCGTC 60.732 63.158 0.00 0.00 42.73 4.20
975 1075 1.664306 GGTTTCCGTGGTCTCGTCT 59.336 57.895 0.00 0.00 0.00 4.18
976 1076 0.388263 GGTTTCCGTGGTCTCGTCTC 60.388 60.000 0.00 0.00 0.00 3.36
977 1077 0.728466 GTTTCCGTGGTCTCGTCTCG 60.728 60.000 0.00 0.00 0.00 4.04
978 1078 2.467946 TTTCCGTGGTCTCGTCTCGC 62.468 60.000 0.00 0.00 0.00 5.03
979 1079 4.813526 CCGTGGTCTCGTCTCGCG 62.814 72.222 0.00 0.00 43.01 5.87
1017 1126 4.344865 ATGGGCGCCACCGTCTTT 62.345 61.111 30.85 0.00 39.48 2.52
1026 1135 1.752198 CACCGTCTTTCCCCACTCA 59.248 57.895 0.00 0.00 0.00 3.41
1342 1451 3.441290 CCTCGCCGACTCGTCCTT 61.441 66.667 0.00 0.00 0.00 3.36
1483 1592 1.725066 GAGCTCCTCGAGAAGACCG 59.275 63.158 15.71 0.00 0.00 4.79
1487 1596 0.393267 CTCCTCGAGAAGACCGGTCT 60.393 60.000 31.69 31.69 42.75 3.85
1662 1774 1.376466 GCTCAAGTGAAGCCAGGGA 59.624 57.895 0.00 0.00 0.00 4.20
1663 1775 0.034670 GCTCAAGTGAAGCCAGGGAT 60.035 55.000 0.00 0.00 0.00 3.85
1664 1776 2.016096 GCTCAAGTGAAGCCAGGGATC 61.016 57.143 0.00 0.00 0.00 3.36
1665 1777 0.620556 TCAAGTGAAGCCAGGGATCC 59.379 55.000 1.92 1.92 0.00 3.36
1681 1793 1.209019 GATCCATCCATCCATCTCGGG 59.791 57.143 0.00 0.00 34.36 5.14
1689 1801 3.473647 CCATCTCGGGGCAGAGCA 61.474 66.667 4.59 0.00 38.12 4.26
1710 1822 2.879002 TGAACAGAGCAGGATCGATC 57.121 50.000 17.36 17.36 0.00 3.69
1830 1943 3.226347 GCAGTTTCATTGTTAGTGCGAC 58.774 45.455 0.00 0.00 0.00 5.19
1866 1979 7.362660 CCCTTGTAACTAAGTAAATTGGGAAGC 60.363 40.741 0.00 0.00 31.98 3.86
2059 2176 6.037610 GGTACATCAGTGAGCAATTCCTTAAG 59.962 42.308 0.00 0.00 0.00 1.85
2060 2177 4.946157 ACATCAGTGAGCAATTCCTTAAGG 59.054 41.667 15.98 15.98 0.00 2.69
2061 2178 4.640771 TCAGTGAGCAATTCCTTAAGGT 57.359 40.909 21.04 0.08 36.34 3.50
2062 2179 4.326826 TCAGTGAGCAATTCCTTAAGGTG 58.673 43.478 21.04 13.18 36.34 4.00
2063 2180 3.441572 CAGTGAGCAATTCCTTAAGGTGG 59.558 47.826 21.04 10.11 36.34 4.61
2064 2181 3.330701 AGTGAGCAATTCCTTAAGGTGGA 59.669 43.478 21.04 9.13 36.34 4.02
2065 2182 3.440522 GTGAGCAATTCCTTAAGGTGGAC 59.559 47.826 21.04 8.50 36.34 4.02
2066 2183 3.073798 TGAGCAATTCCTTAAGGTGGACA 59.926 43.478 21.04 10.39 36.34 4.02
2067 2184 4.079253 GAGCAATTCCTTAAGGTGGACAA 58.921 43.478 21.04 8.16 36.34 3.18
2068 2185 4.082125 AGCAATTCCTTAAGGTGGACAAG 58.918 43.478 21.04 7.38 36.34 3.16
2069 2186 3.193479 GCAATTCCTTAAGGTGGACAAGG 59.807 47.826 21.04 5.85 40.23 3.61
2070 2187 2.579410 TTCCTTAAGGTGGACAAGGC 57.421 50.000 21.04 0.00 38.98 4.35
2071 2188 1.742308 TCCTTAAGGTGGACAAGGCT 58.258 50.000 21.04 0.00 38.98 4.58
2072 2189 2.062636 TCCTTAAGGTGGACAAGGCTT 58.937 47.619 21.04 0.00 38.98 4.35
2073 2190 2.445525 TCCTTAAGGTGGACAAGGCTTT 59.554 45.455 21.04 0.00 38.98 3.51
2074 2191 2.558359 CCTTAAGGTGGACAAGGCTTTG 59.442 50.000 13.83 7.07 40.24 2.77
2075 2192 3.486383 CTTAAGGTGGACAAGGCTTTGA 58.514 45.455 16.36 0.00 37.73 2.69
2076 2193 1.986882 AAGGTGGACAAGGCTTTGAG 58.013 50.000 16.36 0.00 37.73 3.02
2077 2194 0.111253 AGGTGGACAAGGCTTTGAGG 59.889 55.000 16.36 0.00 37.73 3.86
2078 2195 0.110486 GGTGGACAAGGCTTTGAGGA 59.890 55.000 16.36 0.00 37.73 3.71
2079 2196 1.478654 GGTGGACAAGGCTTTGAGGAA 60.479 52.381 16.36 0.00 37.73 3.36
2080 2197 2.519013 GTGGACAAGGCTTTGAGGAAT 58.481 47.619 16.36 0.00 37.73 3.01
2081 2198 3.561313 GGTGGACAAGGCTTTGAGGAATA 60.561 47.826 16.36 0.00 37.73 1.75
2082 2199 4.079253 GTGGACAAGGCTTTGAGGAATAA 58.921 43.478 16.36 0.00 37.73 1.40
2083 2200 4.706962 GTGGACAAGGCTTTGAGGAATAAT 59.293 41.667 16.36 0.00 37.73 1.28
2084 2201 4.706476 TGGACAAGGCTTTGAGGAATAATG 59.294 41.667 16.36 0.00 37.73 1.90
2085 2202 4.440663 GGACAAGGCTTTGAGGAATAATGC 60.441 45.833 16.36 0.00 37.73 3.56
2086 2203 4.347607 ACAAGGCTTTGAGGAATAATGCT 58.652 39.130 16.36 0.00 37.73 3.79
2087 2204 4.774200 ACAAGGCTTTGAGGAATAATGCTT 59.226 37.500 16.36 0.00 37.73 3.91
2088 2205 4.996788 AGGCTTTGAGGAATAATGCTTG 57.003 40.909 0.00 0.00 0.00 4.01
2089 2206 3.703052 AGGCTTTGAGGAATAATGCTTGG 59.297 43.478 0.00 0.00 0.00 3.61
2090 2207 3.181472 GGCTTTGAGGAATAATGCTTGGG 60.181 47.826 0.00 0.00 0.00 4.12
2091 2208 3.448660 GCTTTGAGGAATAATGCTTGGGT 59.551 43.478 0.00 0.00 0.00 4.51
2092 2209 4.081476 GCTTTGAGGAATAATGCTTGGGTT 60.081 41.667 0.00 0.00 0.00 4.11
2093 2210 5.127031 GCTTTGAGGAATAATGCTTGGGTTA 59.873 40.000 0.00 0.00 0.00 2.85
2094 2211 6.350949 GCTTTGAGGAATAATGCTTGGGTTAA 60.351 38.462 0.00 0.00 0.00 2.01
2095 2212 7.633553 GCTTTGAGGAATAATGCTTGGGTTAAT 60.634 37.037 0.00 0.00 0.00 1.40
2096 2213 6.959639 TGAGGAATAATGCTTGGGTTAATC 57.040 37.500 0.00 0.00 0.00 1.75
2097 2214 6.430864 TGAGGAATAATGCTTGGGTTAATCA 58.569 36.000 0.00 0.00 0.00 2.57
2098 2215 6.321181 TGAGGAATAATGCTTGGGTTAATCAC 59.679 38.462 0.00 0.00 0.00 3.06
2099 2216 6.194235 AGGAATAATGCTTGGGTTAATCACA 58.806 36.000 0.00 0.00 0.00 3.58
2100 2217 6.840705 AGGAATAATGCTTGGGTTAATCACAT 59.159 34.615 0.00 0.00 0.00 3.21
2101 2218 7.014615 AGGAATAATGCTTGGGTTAATCACATC 59.985 37.037 0.00 0.00 0.00 3.06
2102 2219 4.637483 AATGCTTGGGTTAATCACATCG 57.363 40.909 0.00 0.00 0.00 3.84
2103 2220 3.342377 TGCTTGGGTTAATCACATCGA 57.658 42.857 0.00 0.00 0.00 3.59
2104 2221 3.884895 TGCTTGGGTTAATCACATCGAT 58.115 40.909 0.00 0.00 35.12 3.59
2105 2222 5.029807 TGCTTGGGTTAATCACATCGATA 57.970 39.130 0.00 0.00 32.51 2.92
2106 2223 4.814234 TGCTTGGGTTAATCACATCGATAC 59.186 41.667 0.00 0.00 32.51 2.24
2107 2224 4.213482 GCTTGGGTTAATCACATCGATACC 59.787 45.833 0.00 0.00 33.49 2.73
2108 2225 4.345859 TGGGTTAATCACATCGATACCC 57.654 45.455 19.31 19.31 46.96 3.69
2109 2226 4.345859 GGGTTAATCACATCGATACCCA 57.654 45.455 20.64 0.00 46.39 4.51
2110 2227 4.315803 GGGTTAATCACATCGATACCCAG 58.684 47.826 20.64 2.20 46.39 4.45
2111 2228 3.746492 GGTTAATCACATCGATACCCAGC 59.254 47.826 0.00 0.00 32.51 4.85
2112 2229 4.377021 GTTAATCACATCGATACCCAGCA 58.623 43.478 0.00 0.00 32.51 4.41
2113 2230 3.777106 AATCACATCGATACCCAGCAT 57.223 42.857 0.00 0.00 32.51 3.79
2114 2231 2.531522 TCACATCGATACCCAGCATG 57.468 50.000 0.00 0.00 0.00 4.06
2115 2232 2.289882 ATCACATCGATACCCAGCATGG 60.290 50.000 0.00 0.00 45.20 3.66
2125 2242 2.434884 CAGCATGGGACGACGCTT 60.435 61.111 3.44 0.00 30.72 4.68
2126 2243 2.434884 AGCATGGGACGACGCTTG 60.435 61.111 11.95 11.95 37.25 4.01
2127 2244 4.166011 GCATGGGACGACGCTTGC 62.166 66.667 21.45 21.45 46.25 4.01
2128 2245 2.434884 CATGGGACGACGCTTGCT 60.435 61.111 3.44 0.00 0.00 3.91
2129 2246 2.125512 ATGGGACGACGCTTGCTC 60.126 61.111 3.44 0.00 0.00 4.26
2130 2247 2.942796 ATGGGACGACGCTTGCTCA 61.943 57.895 3.44 0.00 0.00 4.26
2131 2248 3.112709 GGGACGACGCTTGCTCAC 61.113 66.667 0.00 0.00 0.00 3.51
2132 2249 2.355837 GGACGACGCTTGCTCACA 60.356 61.111 0.00 0.00 0.00 3.58
2133 2250 1.738099 GGACGACGCTTGCTCACAT 60.738 57.895 0.00 0.00 0.00 3.21
2134 2251 1.291877 GGACGACGCTTGCTCACATT 61.292 55.000 0.00 0.00 0.00 2.71
2135 2252 0.093705 GACGACGCTTGCTCACATTC 59.906 55.000 0.00 0.00 0.00 2.67
2136 2253 0.599991 ACGACGCTTGCTCACATTCA 60.600 50.000 0.00 0.00 0.00 2.57
2137 2254 0.512518 CGACGCTTGCTCACATTCAA 59.487 50.000 0.00 0.00 0.00 2.69
2138 2255 1.722751 CGACGCTTGCTCACATTCAAC 60.723 52.381 0.00 0.00 0.00 3.18
2139 2256 1.264020 GACGCTTGCTCACATTCAACA 59.736 47.619 0.00 0.00 0.00 3.33
2140 2257 1.675483 ACGCTTGCTCACATTCAACAA 59.325 42.857 0.00 0.00 0.00 2.83
2141 2258 2.294233 ACGCTTGCTCACATTCAACAAT 59.706 40.909 0.00 0.00 0.00 2.71
2142 2259 3.243501 ACGCTTGCTCACATTCAACAATT 60.244 39.130 0.00 0.00 0.00 2.32
2143 2260 3.737266 CGCTTGCTCACATTCAACAATTT 59.263 39.130 0.00 0.00 0.00 1.82
2144 2261 4.375606 CGCTTGCTCACATTCAACAATTTG 60.376 41.667 0.00 0.00 0.00 2.32
2145 2262 4.609783 GCTTGCTCACATTCAACAATTTGC 60.610 41.667 0.00 0.00 32.17 3.68
2146 2263 3.391965 TGCTCACATTCAACAATTTGCC 58.608 40.909 0.00 0.00 32.17 4.52
2147 2264 3.181468 TGCTCACATTCAACAATTTGCCA 60.181 39.130 0.00 0.00 32.17 4.92
2148 2265 3.184986 GCTCACATTCAACAATTTGCCAC 59.815 43.478 0.00 0.00 32.17 5.01
2149 2266 4.624015 CTCACATTCAACAATTTGCCACT 58.376 39.130 0.00 0.00 32.17 4.00
2150 2267 4.619973 TCACATTCAACAATTTGCCACTC 58.380 39.130 0.00 0.00 32.17 3.51
2151 2268 4.341806 TCACATTCAACAATTTGCCACTCT 59.658 37.500 0.00 0.00 32.17 3.24
2152 2269 5.534278 TCACATTCAACAATTTGCCACTCTA 59.466 36.000 0.00 0.00 32.17 2.43
2153 2270 6.209192 TCACATTCAACAATTTGCCACTCTAT 59.791 34.615 0.00 0.00 32.17 1.98
2154 2271 6.309494 CACATTCAACAATTTGCCACTCTATG 59.691 38.462 0.00 0.00 32.17 2.23
2166 2283 3.471680 CCACTCTATGGGAAAAGCTAGC 58.528 50.000 6.62 6.62 45.95 3.42
2167 2284 3.471680 CACTCTATGGGAAAAGCTAGCC 58.528 50.000 12.13 0.00 0.00 3.93
2168 2285 3.115390 ACTCTATGGGAAAAGCTAGCCA 58.885 45.455 12.13 0.70 0.00 4.75
2169 2286 3.523564 ACTCTATGGGAAAAGCTAGCCAA 59.476 43.478 12.13 0.00 0.00 4.52
2170 2287 4.166919 ACTCTATGGGAAAAGCTAGCCAAT 59.833 41.667 12.13 0.00 0.00 3.16
2171 2288 4.464008 TCTATGGGAAAAGCTAGCCAATG 58.536 43.478 12.13 0.00 0.00 2.82
2172 2289 2.603075 TGGGAAAAGCTAGCCAATGT 57.397 45.000 12.13 0.00 0.00 2.71
2173 2290 2.446435 TGGGAAAAGCTAGCCAATGTC 58.554 47.619 12.13 2.69 0.00 3.06
2174 2291 2.224992 TGGGAAAAGCTAGCCAATGTCA 60.225 45.455 12.13 1.06 0.00 3.58
2175 2292 2.825532 GGGAAAAGCTAGCCAATGTCAA 59.174 45.455 12.13 0.00 0.00 3.18
2176 2293 3.367395 GGGAAAAGCTAGCCAATGTCAAC 60.367 47.826 12.13 0.00 0.00 3.18
2177 2294 3.255642 GGAAAAGCTAGCCAATGTCAACA 59.744 43.478 12.13 0.00 0.00 3.33
2178 2295 4.082026 GGAAAAGCTAGCCAATGTCAACAT 60.082 41.667 12.13 0.00 38.41 2.71
2179 2296 5.125417 GGAAAAGCTAGCCAATGTCAACATA 59.875 40.000 12.13 0.00 35.10 2.29
2180 2297 5.567138 AAAGCTAGCCAATGTCAACATAC 57.433 39.130 12.13 0.00 35.10 2.39
2181 2298 4.220693 AGCTAGCCAATGTCAACATACA 57.779 40.909 12.13 0.00 35.10 2.29
2182 2299 4.588899 AGCTAGCCAATGTCAACATACAA 58.411 39.130 12.13 0.00 35.10 2.41
2183 2300 4.396166 AGCTAGCCAATGTCAACATACAAC 59.604 41.667 12.13 0.00 35.10 3.32
2184 2301 4.155826 GCTAGCCAATGTCAACATACAACA 59.844 41.667 2.29 0.00 35.10 3.33
2185 2302 5.163622 GCTAGCCAATGTCAACATACAACAT 60.164 40.000 2.29 0.00 35.10 2.71
2186 2303 5.063180 AGCCAATGTCAACATACAACATG 57.937 39.130 0.00 0.00 35.10 3.21
2187 2304 4.082081 AGCCAATGTCAACATACAACATGG 60.082 41.667 0.00 1.02 35.10 3.66
2188 2305 4.082300 GCCAATGTCAACATACAACATGGA 60.082 41.667 11.61 0.00 35.40 3.41
2189 2306 5.643664 CCAATGTCAACATACAACATGGAG 58.356 41.667 0.00 0.00 35.40 3.86
2190 2307 5.183713 CCAATGTCAACATACAACATGGAGT 59.816 40.000 0.00 0.00 35.40 3.85
2191 2308 6.294675 CCAATGTCAACATACAACATGGAGTT 60.295 38.462 0.00 0.00 36.84 3.01
2192 2309 5.940192 TGTCAACATACAACATGGAGTTC 57.060 39.130 0.00 0.00 38.74 3.01
2193 2310 4.450757 TGTCAACATACAACATGGAGTTCG 59.549 41.667 0.00 0.00 38.74 3.95
2194 2311 4.451096 GTCAACATACAACATGGAGTTCGT 59.549 41.667 0.00 0.00 38.74 3.85
2195 2312 4.450757 TCAACATACAACATGGAGTTCGTG 59.549 41.667 0.00 0.00 38.74 4.35
2196 2313 4.265904 ACATACAACATGGAGTTCGTGA 57.734 40.909 0.00 0.00 38.74 4.35
2197 2314 4.832248 ACATACAACATGGAGTTCGTGAT 58.168 39.130 0.00 0.00 38.74 3.06
2198 2315 5.245531 ACATACAACATGGAGTTCGTGATT 58.754 37.500 0.00 0.00 38.74 2.57
2199 2316 5.351465 ACATACAACATGGAGTTCGTGATTC 59.649 40.000 0.00 0.00 38.74 2.52
2200 2317 4.008074 ACAACATGGAGTTCGTGATTCT 57.992 40.909 0.00 0.00 38.74 2.40
2201 2318 5.147330 ACAACATGGAGTTCGTGATTCTA 57.853 39.130 0.00 0.00 38.74 2.10
2202 2319 5.734720 ACAACATGGAGTTCGTGATTCTAT 58.265 37.500 0.00 0.00 38.74 1.98
2203 2320 5.812642 ACAACATGGAGTTCGTGATTCTATC 59.187 40.000 0.00 0.00 38.74 2.08
2204 2321 5.598416 ACATGGAGTTCGTGATTCTATCA 57.402 39.130 0.00 0.00 36.29 2.15
2205 2322 6.166984 ACATGGAGTTCGTGATTCTATCAT 57.833 37.500 0.00 0.00 42.04 2.45
2206 2323 6.219473 ACATGGAGTTCGTGATTCTATCATC 58.781 40.000 0.00 0.00 42.04 2.92
2207 2324 6.041409 ACATGGAGTTCGTGATTCTATCATCT 59.959 38.462 0.00 0.00 42.04 2.90
2208 2325 5.836347 TGGAGTTCGTGATTCTATCATCTG 58.164 41.667 0.00 0.00 42.04 2.90
2209 2326 5.221322 TGGAGTTCGTGATTCTATCATCTGG 60.221 44.000 0.00 0.00 42.04 3.86
2210 2327 5.010112 GGAGTTCGTGATTCTATCATCTGGA 59.990 44.000 0.00 0.00 42.04 3.86
2211 2328 6.461648 GGAGTTCGTGATTCTATCATCTGGAA 60.462 42.308 0.00 0.00 42.04 3.53
2212 2329 6.511416 AGTTCGTGATTCTATCATCTGGAAG 58.489 40.000 0.00 0.00 42.04 3.46
2213 2330 4.876125 TCGTGATTCTATCATCTGGAAGC 58.124 43.478 0.00 0.00 42.04 3.86
2214 2331 4.586421 TCGTGATTCTATCATCTGGAAGCT 59.414 41.667 0.00 0.00 42.04 3.74
2215 2332 4.922692 CGTGATTCTATCATCTGGAAGCTC 59.077 45.833 0.00 0.00 42.04 4.09
2216 2333 5.508657 CGTGATTCTATCATCTGGAAGCTCA 60.509 44.000 0.00 0.00 42.04 4.26
2217 2334 5.695816 GTGATTCTATCATCTGGAAGCTCAC 59.304 44.000 0.00 0.00 42.04 3.51
2218 2335 5.601729 TGATTCTATCATCTGGAAGCTCACT 59.398 40.000 0.00 0.00 32.49 3.41
2219 2336 6.779539 TGATTCTATCATCTGGAAGCTCACTA 59.220 38.462 0.00 0.00 32.49 2.74
2220 2337 7.288621 TGATTCTATCATCTGGAAGCTCACTAA 59.711 37.037 0.00 0.00 32.49 2.24
2221 2338 7.609097 TTCTATCATCTGGAAGCTCACTAAT 57.391 36.000 0.00 0.00 0.00 1.73
2222 2339 6.990798 TCTATCATCTGGAAGCTCACTAATG 58.009 40.000 0.00 0.00 0.00 1.90
2223 2340 3.801698 TCATCTGGAAGCTCACTAATGC 58.198 45.455 0.00 0.00 0.00 3.56
2224 2341 2.698855 TCTGGAAGCTCACTAATGCC 57.301 50.000 0.00 0.00 0.00 4.40
2225 2342 1.134699 TCTGGAAGCTCACTAATGCCG 60.135 52.381 0.00 0.00 0.00 5.69
2226 2343 0.107703 TGGAAGCTCACTAATGCCGG 60.108 55.000 0.00 0.00 0.00 6.13
2227 2344 0.815615 GGAAGCTCACTAATGCCGGG 60.816 60.000 2.18 0.00 0.00 5.73
2228 2345 0.178068 GAAGCTCACTAATGCCGGGA 59.822 55.000 2.18 0.00 0.00 5.14
2229 2346 0.107654 AAGCTCACTAATGCCGGGAC 60.108 55.000 2.18 0.00 0.00 4.46
2230 2347 0.978146 AGCTCACTAATGCCGGGACT 60.978 55.000 2.18 0.00 0.00 3.85
2231 2348 0.107654 GCTCACTAATGCCGGGACTT 60.108 55.000 2.18 0.00 0.00 3.01
2232 2349 1.138266 GCTCACTAATGCCGGGACTTA 59.862 52.381 2.18 0.57 0.00 2.24
2233 2350 2.803492 GCTCACTAATGCCGGGACTTAG 60.803 54.545 17.41 17.41 0.00 2.18
2234 2351 2.693591 CTCACTAATGCCGGGACTTAGA 59.306 50.000 22.51 8.73 0.00 2.10
2235 2352 2.693591 TCACTAATGCCGGGACTTAGAG 59.306 50.000 22.51 17.43 0.00 2.43
2236 2353 1.413077 ACTAATGCCGGGACTTAGAGC 59.587 52.381 22.51 0.87 0.00 4.09
2237 2354 1.412710 CTAATGCCGGGACTTAGAGCA 59.587 52.381 15.30 0.40 37.94 4.26
2238 2355 0.839946 AATGCCGGGACTTAGAGCAT 59.160 50.000 2.18 0.00 45.68 3.79
2239 2356 0.394565 ATGCCGGGACTTAGAGCATC 59.605 55.000 2.18 0.00 39.95 3.91
2314 2431 2.271821 AAAAACAACACAGTCGCACC 57.728 45.000 0.00 0.00 0.00 5.01
2315 2432 0.454196 AAAACAACACAGTCGCACCC 59.546 50.000 0.00 0.00 0.00 4.61
2316 2433 1.381165 AAACAACACAGTCGCACCCC 61.381 55.000 0.00 0.00 0.00 4.95
2317 2434 2.978010 CAACACAGTCGCACCCCC 60.978 66.667 0.00 0.00 0.00 5.40
2318 2435 3.484806 AACACAGTCGCACCCCCA 61.485 61.111 0.00 0.00 0.00 4.96
2319 2436 3.476031 AACACAGTCGCACCCCCAG 62.476 63.158 0.00 0.00 0.00 4.45
2320 2437 4.704833 CACAGTCGCACCCCCAGG 62.705 72.222 0.00 0.00 40.04 4.45
2321 2438 4.954118 ACAGTCGCACCCCCAGGA 62.954 66.667 0.00 0.00 36.73 3.86
2322 2439 4.087892 CAGTCGCACCCCCAGGAG 62.088 72.222 0.00 0.00 36.73 3.69
2330 2447 3.979497 CCCCCAGGAGCCCGTTTT 61.979 66.667 0.00 0.00 33.47 2.43
2331 2448 2.117423 CCCCAGGAGCCCGTTTTT 59.883 61.111 0.00 0.00 0.00 1.94
2332 2449 1.977009 CCCCAGGAGCCCGTTTTTC 60.977 63.158 0.00 0.00 0.00 2.29
2333 2450 2.332654 CCCAGGAGCCCGTTTTTCG 61.333 63.158 0.00 0.00 39.52 3.46
2334 2451 2.561373 CAGGAGCCCGTTTTTCGC 59.439 61.111 0.00 0.00 38.35 4.70
2335 2452 2.671963 AGGAGCCCGTTTTTCGCC 60.672 61.111 0.00 0.00 38.35 5.54
2336 2453 4.097863 GGAGCCCGTTTTTCGCCG 62.098 66.667 0.00 0.00 38.35 6.46
2337 2454 4.097863 GAGCCCGTTTTTCGCCGG 62.098 66.667 0.00 0.00 43.82 6.13
2340 2457 3.666253 CCCGTTTTTCGCCGGCTT 61.666 61.111 26.68 0.00 42.87 4.35
2341 2458 2.428403 CCGTTTTTCGCCGGCTTG 60.428 61.111 26.68 10.37 37.43 4.01
2342 2459 2.428403 CGTTTTTCGCCGGCTTGG 60.428 61.111 26.68 9.50 42.50 3.61
2343 2460 2.049526 GTTTTTCGCCGGCTTGGG 60.050 61.111 26.68 9.07 38.63 4.12
2392 2509 4.004241 GCGTCGGCCGAAACGTTT 62.004 61.111 32.93 14.57 40.87 3.60
2393 2510 2.627555 CGTCGGCCGAAACGTTTT 59.372 55.556 32.93 0.00 39.56 2.43
2394 2511 1.010908 CGTCGGCCGAAACGTTTTT 60.011 52.632 32.93 0.00 39.56 1.94
2395 2512 1.256935 CGTCGGCCGAAACGTTTTTG 61.257 55.000 32.93 10.80 39.56 2.44
2396 2513 0.931202 GTCGGCCGAAACGTTTTTGG 60.931 55.000 32.93 22.17 0.00 3.28
2397 2514 2.297195 CGGCCGAAACGTTTTTGGC 61.297 57.895 33.24 33.24 37.79 4.52
2398 2515 2.297195 GGCCGAAACGTTTTTGGCG 61.297 57.895 33.30 24.10 38.65 5.69
2399 2516 2.923177 GCCGAAACGTTTTTGGCGC 61.923 57.895 30.12 17.74 32.69 6.53
2400 2517 2.631630 CCGAAACGTTTTTGGCGCG 61.632 57.895 15.89 12.30 0.00 6.86
2401 2518 1.651730 CGAAACGTTTTTGGCGCGA 60.652 52.632 15.89 0.00 0.00 5.87
2402 2519 1.194896 CGAAACGTTTTTGGCGCGAA 61.195 50.000 15.89 0.00 0.00 4.70
2403 2520 0.915227 GAAACGTTTTTGGCGCGAAA 59.085 45.000 15.89 13.91 0.00 3.46
2404 2521 1.320852 GAAACGTTTTTGGCGCGAAAA 59.679 42.857 23.88 23.88 0.00 2.29
2405 2522 0.641275 AACGTTTTTGGCGCGAAAAC 59.359 45.000 26.79 27.07 41.62 2.43
2406 2523 1.140999 ACGTTTTTGGCGCGAAAACC 61.141 50.000 26.79 20.19 41.87 3.27
2407 2524 1.556011 GTTTTTGGCGCGAAAACCG 59.444 52.632 26.79 0.00 40.11 4.44
2408 2525 1.589196 TTTTTGGCGCGAAAACCGG 60.589 52.632 26.79 0.00 39.04 5.28
2430 2547 3.710722 CCCTCCTTGGCAGCGACT 61.711 66.667 0.00 0.00 0.00 4.18
2431 2548 2.125350 CCTCCTTGGCAGCGACTC 60.125 66.667 0.00 0.00 0.00 3.36
2432 2549 2.507992 CTCCTTGGCAGCGACTCG 60.508 66.667 0.00 0.00 0.00 4.18
2433 2550 3.997064 CTCCTTGGCAGCGACTCGG 62.997 68.421 0.00 0.00 0.00 4.63
2435 2552 4.749310 CTTGGCAGCGACTCGGCT 62.749 66.667 0.00 0.00 46.13 5.52
2436 2553 4.742201 TTGGCAGCGACTCGGCTC 62.742 66.667 0.00 0.00 42.53 4.70
2438 2555 4.443266 GGCAGCGACTCGGCTCTT 62.443 66.667 0.00 0.00 42.53 2.85
2439 2556 2.883253 GCAGCGACTCGGCTCTTC 60.883 66.667 0.00 0.00 42.53 2.87
2440 2557 2.881389 CAGCGACTCGGCTCTTCT 59.119 61.111 0.00 0.00 42.53 2.85
2441 2558 1.226547 CAGCGACTCGGCTCTTCTC 60.227 63.158 0.00 0.00 42.53 2.87
2442 2559 2.277628 GCGACTCGGCTCTTCTCG 60.278 66.667 0.00 0.00 0.00 4.04
2443 2560 2.277628 CGACTCGGCTCTTCTCGC 60.278 66.667 0.00 0.00 0.00 5.03
2444 2561 2.103340 GACTCGGCTCTTCTCGCC 59.897 66.667 0.00 0.00 44.11 5.54
2449 2566 2.888051 GGCTCTTCTCGCCGCTTC 60.888 66.667 0.00 0.00 37.87 3.86
2450 2567 3.251043 GCTCTTCTCGCCGCTTCG 61.251 66.667 0.00 0.00 0.00 3.79
2451 2568 2.179517 CTCTTCTCGCCGCTTCGT 59.820 61.111 0.00 0.00 0.00 3.85
2452 2569 1.870016 CTCTTCTCGCCGCTTCGTC 60.870 63.158 0.00 0.00 0.00 4.20
2453 2570 3.241059 CTTCTCGCCGCTTCGTCG 61.241 66.667 0.00 0.00 0.00 5.12
2454 2571 3.948086 CTTCTCGCCGCTTCGTCGT 62.948 63.158 0.00 0.00 0.00 4.34
2455 2572 3.940975 TTCTCGCCGCTTCGTCGTC 62.941 63.158 0.00 0.00 0.00 4.20
2459 2576 4.415332 GCCGCTTCGTCGTCCTCA 62.415 66.667 0.00 0.00 0.00 3.86
2460 2577 2.490217 CCGCTTCGTCGTCCTCAT 59.510 61.111 0.00 0.00 0.00 2.90
2461 2578 1.586564 CCGCTTCGTCGTCCTCATC 60.587 63.158 0.00 0.00 0.00 2.92
2462 2579 1.934956 CGCTTCGTCGTCCTCATCG 60.935 63.158 0.00 0.00 0.00 3.84
2463 2580 1.136984 GCTTCGTCGTCCTCATCGT 59.863 57.895 0.00 0.00 0.00 3.73
2464 2581 0.862283 GCTTCGTCGTCCTCATCGTC 60.862 60.000 0.00 0.00 0.00 4.20
2465 2582 0.727970 CTTCGTCGTCCTCATCGTCT 59.272 55.000 0.00 0.00 0.00 4.18
2466 2583 0.725686 TTCGTCGTCCTCATCGTCTC 59.274 55.000 0.00 0.00 0.00 3.36
2467 2584 1.012124 CGTCGTCCTCATCGTCTCG 60.012 63.158 0.00 0.00 0.00 4.04
2468 2585 1.352404 GTCGTCCTCATCGTCTCGG 59.648 63.158 0.00 0.00 0.00 4.63
2469 2586 1.078637 TCGTCCTCATCGTCTCGGT 60.079 57.895 0.00 0.00 0.00 4.69
2470 2587 0.675837 TCGTCCTCATCGTCTCGGTT 60.676 55.000 0.00 0.00 0.00 4.44
2471 2588 0.248134 CGTCCTCATCGTCTCGGTTC 60.248 60.000 0.00 0.00 0.00 3.62
2472 2589 1.096416 GTCCTCATCGTCTCGGTTCT 58.904 55.000 0.00 0.00 0.00 3.01
2473 2590 1.064357 GTCCTCATCGTCTCGGTTCTC 59.936 57.143 0.00 0.00 0.00 2.87
2474 2591 0.028242 CCTCATCGTCTCGGTTCTCG 59.972 60.000 0.00 0.00 40.90 4.04
2475 2592 0.590230 CTCATCGTCTCGGTTCTCGC 60.590 60.000 0.00 0.00 39.05 5.03
2476 2593 1.934956 CATCGTCTCGGTTCTCGCG 60.935 63.158 0.00 0.00 39.05 5.87
2477 2594 2.104859 ATCGTCTCGGTTCTCGCGA 61.105 57.895 9.26 9.26 39.05 5.87
2478 2595 2.307137 ATCGTCTCGGTTCTCGCGAC 62.307 60.000 3.71 0.00 46.50 5.19
2479 2596 2.573689 GTCTCGGTTCTCGCGACG 60.574 66.667 3.71 7.77 42.48 5.12
2480 2597 2.739671 TCTCGGTTCTCGCGACGA 60.740 61.111 16.99 16.99 39.05 4.20
2481 2598 2.175078 CTCGGTTCTCGCGACGAA 59.825 61.111 18.23 16.20 39.05 3.85
2482 2599 1.226323 CTCGGTTCTCGCGACGAAT 60.226 57.895 18.23 0.00 39.05 3.34
2483 2600 0.027194 CTCGGTTCTCGCGACGAATA 59.973 55.000 18.23 9.53 39.05 1.75
2484 2601 0.447406 TCGGTTCTCGCGACGAATAA 59.553 50.000 15.88 6.61 39.05 1.40
2485 2602 1.135717 TCGGTTCTCGCGACGAATAAA 60.136 47.619 15.88 6.33 39.05 1.40
2486 2603 1.850441 CGGTTCTCGCGACGAATAAAT 59.150 47.619 19.10 0.00 34.74 1.40
2487 2604 2.346376 CGGTTCTCGCGACGAATAAATG 60.346 50.000 19.10 2.63 34.74 2.32
2488 2605 2.596807 GGTTCTCGCGACGAATAAATGC 60.597 50.000 19.10 8.94 34.74 3.56
2489 2606 1.205657 TCTCGCGACGAATAAATGCC 58.794 50.000 3.71 0.00 34.74 4.40
2490 2607 0.927537 CTCGCGACGAATAAATGCCA 59.072 50.000 3.71 0.00 34.74 4.92
2491 2608 1.326245 CTCGCGACGAATAAATGCCAA 59.674 47.619 3.71 0.00 34.74 4.52
2492 2609 1.732809 TCGCGACGAATAAATGCCAAA 59.267 42.857 3.71 0.00 31.06 3.28
2493 2610 2.101125 CGCGACGAATAAATGCCAAAG 58.899 47.619 0.00 0.00 0.00 2.77
2494 2611 1.846175 GCGACGAATAAATGCCAAAGC 59.154 47.619 0.00 0.00 40.48 3.51
2495 2612 2.477863 GCGACGAATAAATGCCAAAGCT 60.478 45.455 0.00 0.00 40.80 3.74
2496 2613 3.100817 CGACGAATAAATGCCAAAGCTG 58.899 45.455 0.00 0.00 40.80 4.24
2497 2614 2.854185 GACGAATAAATGCCAAAGCTGC 59.146 45.455 0.00 0.00 40.80 5.25
2498 2615 2.195922 CGAATAAATGCCAAAGCTGCC 58.804 47.619 0.00 0.00 40.80 4.85
2499 2616 2.195922 GAATAAATGCCAAAGCTGCCG 58.804 47.619 0.00 0.00 40.80 5.69
2500 2617 0.179103 ATAAATGCCAAAGCTGCCGC 60.179 50.000 0.00 0.00 40.80 6.53
2501 2618 2.540736 TAAATGCCAAAGCTGCCGCG 62.541 55.000 0.00 0.00 42.32 6.46
2526 2643 4.459089 GTGCCGGTCAGCCTCCTC 62.459 72.222 1.90 0.00 0.00 3.71
2529 2646 2.765807 CCGGTCAGCCTCCTCCAT 60.766 66.667 0.00 0.00 0.00 3.41
2530 2647 2.370445 CCGGTCAGCCTCCTCCATT 61.370 63.158 0.00 0.00 0.00 3.16
2531 2648 1.153289 CGGTCAGCCTCCTCCATTG 60.153 63.158 0.00 0.00 0.00 2.82
2532 2649 1.617018 CGGTCAGCCTCCTCCATTGA 61.617 60.000 0.00 0.00 0.00 2.57
2533 2650 0.842635 GGTCAGCCTCCTCCATTGAT 59.157 55.000 0.00 0.00 0.00 2.57
2534 2651 1.476471 GGTCAGCCTCCTCCATTGATG 60.476 57.143 0.00 0.00 0.00 3.07
2535 2652 0.182061 TCAGCCTCCTCCATTGATGC 59.818 55.000 0.00 0.00 0.00 3.91
2536 2653 0.822532 CAGCCTCCTCCATTGATGCC 60.823 60.000 0.00 0.00 0.00 4.40
2537 2654 0.992431 AGCCTCCTCCATTGATGCCT 60.992 55.000 0.00 0.00 0.00 4.75
2538 2655 0.536915 GCCTCCTCCATTGATGCCTC 60.537 60.000 0.00 0.00 0.00 4.70
2539 2656 0.841961 CCTCCTCCATTGATGCCTCA 59.158 55.000 0.00 0.00 0.00 3.86
2540 2657 1.476471 CCTCCTCCATTGATGCCTCAC 60.476 57.143 0.00 0.00 0.00 3.51
2541 2658 0.178767 TCCTCCATTGATGCCTCACG 59.821 55.000 0.00 0.00 0.00 4.35
2542 2659 0.816825 CCTCCATTGATGCCTCACGG 60.817 60.000 0.00 0.00 0.00 4.94
2543 2660 0.816825 CTCCATTGATGCCTCACGGG 60.817 60.000 6.75 4.77 38.36 5.28
2555 2672 4.728102 CACGGGCGGCGTAGTGAA 62.728 66.667 20.48 0.00 36.79 3.18
2556 2673 4.430765 ACGGGCGGCGTAGTGAAG 62.431 66.667 9.37 0.00 0.00 3.02
2557 2674 4.124351 CGGGCGGCGTAGTGAAGA 62.124 66.667 9.37 0.00 0.00 2.87
2558 2675 2.508663 GGGCGGCGTAGTGAAGAC 60.509 66.667 9.37 0.00 0.00 3.01
2559 2676 2.508663 GGCGGCGTAGTGAAGACC 60.509 66.667 9.37 0.00 0.00 3.85
2560 2677 2.879462 GCGGCGTAGTGAAGACCG 60.879 66.667 9.37 0.00 46.50 4.79
2561 2678 2.202570 CGGCGTAGTGAAGACCGG 60.203 66.667 0.00 0.00 40.18 5.28
2562 2679 2.693762 CGGCGTAGTGAAGACCGGA 61.694 63.158 9.46 0.00 40.18 5.14
2563 2680 1.153881 GGCGTAGTGAAGACCGGAC 60.154 63.158 9.46 0.10 0.00 4.79
2564 2681 1.513586 GCGTAGTGAAGACCGGACG 60.514 63.158 9.46 5.99 0.00 4.79
2565 2682 1.915614 GCGTAGTGAAGACCGGACGA 61.916 60.000 9.46 0.00 32.20 4.20
2566 2683 0.179205 CGTAGTGAAGACCGGACGAC 60.179 60.000 9.46 0.15 32.20 4.34
2567 2684 0.179205 GTAGTGAAGACCGGACGACG 60.179 60.000 9.46 0.00 43.80 5.12
2568 2685 1.915614 TAGTGAAGACCGGACGACGC 61.916 60.000 9.46 8.64 42.52 5.19
2569 2686 4.394078 TGAAGACCGGACGACGCG 62.394 66.667 9.46 3.53 42.52 6.01
2596 2713 3.411351 CCTGCCACGCGTACACAC 61.411 66.667 13.44 0.00 0.00 3.82
2636 2753 1.646189 GCGCCTCTGCCTATATAAGC 58.354 55.000 0.00 0.00 0.00 3.09
2637 2754 1.740718 GCGCCTCTGCCTATATAAGCC 60.741 57.143 0.00 0.00 0.00 4.35
2638 2755 1.469940 CGCCTCTGCCTATATAAGCCG 60.470 57.143 0.87 0.00 0.00 5.52
2639 2756 1.740718 GCCTCTGCCTATATAAGCCGC 60.741 57.143 0.87 0.00 0.00 6.53
2640 2757 1.134670 CCTCTGCCTATATAAGCCGCC 60.135 57.143 0.87 0.00 0.00 6.13
2641 2758 0.902531 TCTGCCTATATAAGCCGCCC 59.097 55.000 0.87 0.00 0.00 6.13
2642 2759 0.107654 CTGCCTATATAAGCCGCCCC 60.108 60.000 0.87 0.00 0.00 5.80
2643 2760 0.838554 TGCCTATATAAGCCGCCCCA 60.839 55.000 0.87 0.00 0.00 4.96
2644 2761 0.326927 GCCTATATAAGCCGCCCCAA 59.673 55.000 0.00 0.00 0.00 4.12
2645 2762 1.679032 GCCTATATAAGCCGCCCCAAG 60.679 57.143 0.00 0.00 0.00 3.61
2646 2763 1.679032 CCTATATAAGCCGCCCCAAGC 60.679 57.143 0.00 0.00 38.52 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.671845 CCAGTTCGGGTTTTTCGTTCA 59.328 47.619 0.00 0.00 0.00 3.18
325 373 1.959226 GCGAGAGGCACGGTTTTGA 60.959 57.895 0.00 0.00 42.87 2.69
370 420 3.243737 GCCTCTTGGAAACGGAACAAATT 60.244 43.478 0.00 0.00 34.57 1.82
371 421 2.296190 GCCTCTTGGAAACGGAACAAAT 59.704 45.455 0.00 0.00 34.57 2.32
375 425 0.591659 GTGCCTCTTGGAAACGGAAC 59.408 55.000 0.00 0.00 34.57 3.62
513 574 3.818773 CTGGTTTTCCCTAGCTTTTCGAA 59.181 43.478 0.00 0.00 39.73 3.71
530 591 4.993029 TTTTTCGATGTTTCCACTGGTT 57.007 36.364 0.00 0.00 0.00 3.67
564 637 3.491267 CGCATTTCCGGCTTTTTAAACAA 59.509 39.130 0.00 0.00 0.00 2.83
565 638 3.053455 CGCATTTCCGGCTTTTTAAACA 58.947 40.909 0.00 0.00 0.00 2.83
579 652 4.894798 TTTATTTTTCCGCACGCATTTC 57.105 36.364 0.00 0.00 0.00 2.17
583 656 3.079960 TGTTTTATTTTTCCGCACGCA 57.920 38.095 0.00 0.00 0.00 5.24
644 732 2.431430 CTTGACGCGCTCTCAGCA 60.431 61.111 5.73 0.00 42.58 4.41
686 774 2.380084 AATTAACGAGCGCTCCTTCA 57.620 45.000 30.66 17.41 0.00 3.02
716 804 4.701171 GTGTGTAAATTCCCCGTTTATGGA 59.299 41.667 0.00 0.00 0.00 3.41
719 807 4.154556 CACGTGTGTAAATTCCCCGTTTAT 59.845 41.667 7.58 0.00 0.00 1.40
722 810 1.874872 CACGTGTGTAAATTCCCCGTT 59.125 47.619 7.58 0.00 0.00 4.44
723 811 1.515081 CACGTGTGTAAATTCCCCGT 58.485 50.000 7.58 0.00 0.00 5.28
724 812 0.800012 CCACGTGTGTAAATTCCCCG 59.200 55.000 15.65 0.00 0.00 5.73
725 813 1.900245 ACCACGTGTGTAAATTCCCC 58.100 50.000 15.65 0.00 0.00 4.81
726 814 2.743664 GGTACCACGTGTGTAAATTCCC 59.256 50.000 15.65 9.28 0.00 3.97
727 815 3.401182 TGGTACCACGTGTGTAAATTCC 58.599 45.455 11.60 12.87 0.00 3.01
728 816 5.616488 ATTGGTACCACGTGTGTAAATTC 57.384 39.130 16.04 4.75 0.00 2.17
729 817 6.036300 CGATATTGGTACCACGTGTGTAAATT 59.964 38.462 16.04 7.47 0.00 1.82
730 818 5.521010 CGATATTGGTACCACGTGTGTAAAT 59.479 40.000 16.04 14.33 0.00 1.40
731 819 4.863689 CGATATTGGTACCACGTGTGTAAA 59.136 41.667 16.04 8.82 0.00 2.01
732 820 4.422840 CGATATTGGTACCACGTGTGTAA 58.577 43.478 16.04 0.00 0.00 2.41
733 821 3.734597 GCGATATTGGTACCACGTGTGTA 60.735 47.826 16.04 13.14 0.00 2.90
734 822 2.883574 CGATATTGGTACCACGTGTGT 58.116 47.619 16.04 14.16 0.00 3.72
735 823 1.591158 GCGATATTGGTACCACGTGTG 59.409 52.381 16.04 8.62 0.00 3.82
736 824 1.205179 TGCGATATTGGTACCACGTGT 59.795 47.619 16.04 4.64 0.00 4.49
737 825 1.858458 CTGCGATATTGGTACCACGTG 59.142 52.381 16.04 9.08 0.00 4.49
738 826 1.202486 CCTGCGATATTGGTACCACGT 60.202 52.381 16.04 9.24 0.00 4.49
739 827 1.497991 CCTGCGATATTGGTACCACG 58.502 55.000 16.04 16.08 0.00 4.94
740 828 1.226746 GCCTGCGATATTGGTACCAC 58.773 55.000 16.04 2.07 0.00 4.16
741 829 0.107831 GGCCTGCGATATTGGTACCA 59.892 55.000 11.60 11.60 0.00 3.25
742 830 0.396811 AGGCCTGCGATATTGGTACC 59.603 55.000 3.11 4.43 0.00 3.34
743 831 2.256117 AAGGCCTGCGATATTGGTAC 57.744 50.000 5.69 0.00 0.00 3.34
744 832 2.038033 GGTAAGGCCTGCGATATTGGTA 59.962 50.000 5.69 0.00 0.00 3.25
745 833 1.202770 GGTAAGGCCTGCGATATTGGT 60.203 52.381 5.69 0.00 0.00 3.67
746 834 1.202758 TGGTAAGGCCTGCGATATTGG 60.203 52.381 5.69 0.00 38.35 3.16
747 835 2.254546 TGGTAAGGCCTGCGATATTG 57.745 50.000 5.69 0.00 38.35 1.90
748 836 2.949644 GTTTGGTAAGGCCTGCGATATT 59.050 45.455 5.69 0.00 38.35 1.28
749 837 2.572290 GTTTGGTAAGGCCTGCGATAT 58.428 47.619 5.69 0.00 38.35 1.63
750 838 1.407712 GGTTTGGTAAGGCCTGCGATA 60.408 52.381 5.69 0.00 38.35 2.92
751 839 0.679960 GGTTTGGTAAGGCCTGCGAT 60.680 55.000 5.69 0.00 38.35 4.58
752 840 1.302993 GGTTTGGTAAGGCCTGCGA 60.303 57.895 5.69 0.00 38.35 5.10
753 841 2.340328 GGGTTTGGTAAGGCCTGCG 61.340 63.158 5.69 0.00 38.35 5.18
754 842 0.965866 GAGGGTTTGGTAAGGCCTGC 60.966 60.000 5.69 1.67 38.35 4.85
755 843 0.404040 TGAGGGTTTGGTAAGGCCTG 59.596 55.000 5.69 0.00 38.35 4.85
756 844 1.154430 TTGAGGGTTTGGTAAGGCCT 58.846 50.000 0.00 0.00 38.35 5.19
757 845 2.003937 TTTGAGGGTTTGGTAAGGCC 57.996 50.000 0.00 0.00 37.90 5.19
779 867 7.900782 AGTGCAATGTACTAGTACGATTTTT 57.099 32.000 24.36 11.99 38.85 1.94
780 868 7.900782 AAGTGCAATGTACTAGTACGATTTT 57.099 32.000 24.36 14.03 38.85 1.82
781 869 7.623506 GCAAAGTGCAATGTACTAGTACGATTT 60.624 37.037 24.36 16.10 44.26 2.17
782 870 6.183360 GCAAAGTGCAATGTACTAGTACGATT 60.183 38.462 24.36 20.54 44.26 3.34
783 871 5.291128 GCAAAGTGCAATGTACTAGTACGAT 59.709 40.000 24.36 16.81 44.26 3.73
784 872 4.624024 GCAAAGTGCAATGTACTAGTACGA 59.376 41.667 24.36 15.51 44.26 3.43
785 873 4.882447 GCAAAGTGCAATGTACTAGTACG 58.118 43.478 24.36 13.63 44.26 3.67
802 890 2.370189 TGGGGTATTTGGGTTTGCAAAG 59.630 45.455 13.26 0.00 0.00 2.77
858 949 4.622701 GGATTCAACTCCGAAATCCAAG 57.377 45.455 8.17 0.00 0.00 3.61
1079 1188 3.585990 CGGGGTTGATGCGGATGC 61.586 66.667 0.00 0.00 43.20 3.91
1258 1367 3.905678 CGAGCTCCGCGGATCCTT 61.906 66.667 31.19 14.44 0.00 3.36
1306 1415 1.302033 CGCTGCTCTGGTTCTTGGT 60.302 57.895 0.00 0.00 0.00 3.67
1483 1592 0.108281 GGACTAACCTTGGCGAGACC 60.108 60.000 2.43 0.00 35.60 3.85
1504 1616 2.125229 CTCAGCATCGGCAGCAGT 60.125 61.111 0.00 0.00 44.61 4.40
1585 1697 1.802880 CGTCCGAACCATCTGATCCAC 60.803 57.143 0.00 0.00 0.00 4.02
1590 1702 1.589630 CACCGTCCGAACCATCTGA 59.410 57.895 0.00 0.00 0.00 3.27
1620 1732 1.059098 CCTGGGGATCGATGAATGGA 58.941 55.000 0.54 0.00 0.00 3.41
1662 1774 1.283347 CCCGAGATGGATGGATGGAT 58.717 55.000 0.00 0.00 42.00 3.41
1663 1775 0.837691 CCCCGAGATGGATGGATGGA 60.838 60.000 0.00 0.00 42.00 3.41
1664 1776 1.681666 CCCCGAGATGGATGGATGG 59.318 63.158 0.00 0.00 42.00 3.51
1665 1777 1.002868 GCCCCGAGATGGATGGATG 60.003 63.158 0.00 0.00 42.00 3.51
1681 1793 0.450983 GCTCTGTTCATTGCTCTGCC 59.549 55.000 0.00 0.00 0.00 4.85
1689 1801 3.494048 GGATCGATCCTGCTCTGTTCATT 60.494 47.826 32.91 0.00 43.73 2.57
1710 1822 1.961793 TTCTTCACTTGTTGGACGGG 58.038 50.000 0.00 0.00 0.00 5.28
1830 1943 3.721087 AGTTACAAGGGGGAATCACAG 57.279 47.619 0.00 0.00 0.00 3.66
1866 1979 8.443160 CAAGTGACCAACTAATGTATTACAGTG 58.557 37.037 7.02 0.00 38.56 3.66
1940 2055 4.391216 CAGTAGCATGGACTGAAGACAAAG 59.609 45.833 0.00 0.00 46.01 2.77
2059 2176 0.110486 TCCTCAAAGCCTTGTCCACC 59.890 55.000 0.00 0.00 33.94 4.61
2060 2177 1.981256 TTCCTCAAAGCCTTGTCCAC 58.019 50.000 0.00 0.00 33.94 4.02
2061 2178 2.978156 ATTCCTCAAAGCCTTGTCCA 57.022 45.000 0.00 0.00 33.94 4.02
2062 2179 4.440663 GCATTATTCCTCAAAGCCTTGTCC 60.441 45.833 0.00 0.00 33.94 4.02
2063 2180 4.400567 AGCATTATTCCTCAAAGCCTTGTC 59.599 41.667 0.00 0.00 33.94 3.18
2064 2181 4.347607 AGCATTATTCCTCAAAGCCTTGT 58.652 39.130 0.00 0.00 33.94 3.16
2065 2182 4.996788 AGCATTATTCCTCAAAGCCTTG 57.003 40.909 0.00 0.00 0.00 3.61
2066 2183 4.161001 CCAAGCATTATTCCTCAAAGCCTT 59.839 41.667 0.00 0.00 0.00 4.35
2067 2184 3.703052 CCAAGCATTATTCCTCAAAGCCT 59.297 43.478 0.00 0.00 0.00 4.58
2068 2185 3.181472 CCCAAGCATTATTCCTCAAAGCC 60.181 47.826 0.00 0.00 0.00 4.35
2069 2186 3.448660 ACCCAAGCATTATTCCTCAAAGC 59.551 43.478 0.00 0.00 0.00 3.51
2070 2187 5.665916 AACCCAAGCATTATTCCTCAAAG 57.334 39.130 0.00 0.00 0.00 2.77
2071 2188 7.398618 TGATTAACCCAAGCATTATTCCTCAAA 59.601 33.333 0.00 0.00 0.00 2.69
2072 2189 6.894654 TGATTAACCCAAGCATTATTCCTCAA 59.105 34.615 0.00 0.00 0.00 3.02
2073 2190 6.321181 GTGATTAACCCAAGCATTATTCCTCA 59.679 38.462 0.00 0.00 34.49 3.86
2074 2191 6.321181 TGTGATTAACCCAAGCATTATTCCTC 59.679 38.462 0.00 0.00 34.49 3.71
2075 2192 6.194235 TGTGATTAACCCAAGCATTATTCCT 58.806 36.000 0.00 0.00 34.49 3.36
2076 2193 6.463995 TGTGATTAACCCAAGCATTATTCC 57.536 37.500 0.00 0.00 34.49 3.01
2077 2194 6.857964 CGATGTGATTAACCCAAGCATTATTC 59.142 38.462 0.00 0.00 34.49 1.75
2078 2195 6.545666 TCGATGTGATTAACCCAAGCATTATT 59.454 34.615 0.00 0.00 34.49 1.40
2079 2196 6.061441 TCGATGTGATTAACCCAAGCATTAT 58.939 36.000 0.00 0.00 34.49 1.28
2080 2197 5.432645 TCGATGTGATTAACCCAAGCATTA 58.567 37.500 0.00 0.00 34.49 1.90
2081 2198 4.269183 TCGATGTGATTAACCCAAGCATT 58.731 39.130 0.00 0.00 34.49 3.56
2082 2199 3.884895 TCGATGTGATTAACCCAAGCAT 58.115 40.909 0.00 0.00 34.49 3.79
2083 2200 3.342377 TCGATGTGATTAACCCAAGCA 57.658 42.857 0.00 0.00 0.00 3.91
2084 2201 4.213482 GGTATCGATGTGATTAACCCAAGC 59.787 45.833 8.54 0.00 38.57 4.01
2085 2202 5.924475 GGTATCGATGTGATTAACCCAAG 57.076 43.478 8.54 0.00 38.57 3.61
2089 2206 3.746492 GCTGGGTATCGATGTGATTAACC 59.254 47.826 8.54 5.40 38.57 2.85
2090 2207 4.377021 TGCTGGGTATCGATGTGATTAAC 58.623 43.478 8.54 0.00 38.57 2.01
2091 2208 4.681074 TGCTGGGTATCGATGTGATTAA 57.319 40.909 8.54 0.00 38.57 1.40
2092 2209 4.563374 CCATGCTGGGTATCGATGTGATTA 60.563 45.833 8.54 0.00 34.49 1.75
2093 2210 3.405831 CATGCTGGGTATCGATGTGATT 58.594 45.455 8.54 0.00 38.57 2.57
2094 2211 2.289882 CCATGCTGGGTATCGATGTGAT 60.290 50.000 8.54 0.00 35.99 3.06
2095 2212 1.070601 CCATGCTGGGTATCGATGTGA 59.929 52.381 8.54 0.00 32.67 3.58
2096 2213 1.516161 CCATGCTGGGTATCGATGTG 58.484 55.000 8.54 0.00 32.67 3.21
2107 2224 3.958147 AAGCGTCGTCCCATGCTGG 62.958 63.158 0.00 0.00 38.70 4.85
2108 2225 2.434884 AAGCGTCGTCCCATGCTG 60.435 61.111 0.00 0.00 38.70 4.41
2109 2226 2.434884 CAAGCGTCGTCCCATGCT 60.435 61.111 0.00 0.00 40.56 3.79
2110 2227 4.166011 GCAAGCGTCGTCCCATGC 62.166 66.667 0.00 0.00 0.00 4.06
2111 2228 2.434884 AGCAAGCGTCGTCCCATG 60.435 61.111 0.00 0.00 0.00 3.66
2112 2229 2.125512 GAGCAAGCGTCGTCCCAT 60.126 61.111 0.00 0.00 0.00 4.00
2113 2230 3.611674 TGAGCAAGCGTCGTCCCA 61.612 61.111 0.00 0.00 0.00 4.37
2114 2231 3.112709 GTGAGCAAGCGTCGTCCC 61.113 66.667 0.00 0.00 0.00 4.46
2115 2232 1.291877 AATGTGAGCAAGCGTCGTCC 61.292 55.000 0.00 0.00 0.00 4.79
2116 2233 0.093705 GAATGTGAGCAAGCGTCGTC 59.906 55.000 0.00 0.00 0.00 4.20
2117 2234 0.599991 TGAATGTGAGCAAGCGTCGT 60.600 50.000 0.00 0.00 0.00 4.34
2118 2235 0.512518 TTGAATGTGAGCAAGCGTCG 59.487 50.000 0.00 0.00 0.00 5.12
2119 2236 1.264020 TGTTGAATGTGAGCAAGCGTC 59.736 47.619 0.00 0.00 0.00 5.19
2120 2237 1.308047 TGTTGAATGTGAGCAAGCGT 58.692 45.000 0.00 0.00 0.00 5.07
2121 2238 2.404265 TTGTTGAATGTGAGCAAGCG 57.596 45.000 0.00 0.00 0.00 4.68
2122 2239 4.609783 GCAAATTGTTGAATGTGAGCAAGC 60.610 41.667 0.00 0.00 36.83 4.01
2123 2240 4.084223 GGCAAATTGTTGAATGTGAGCAAG 60.084 41.667 0.00 0.00 36.83 4.01
2124 2241 3.808726 GGCAAATTGTTGAATGTGAGCAA 59.191 39.130 0.00 0.00 36.83 3.91
2125 2242 3.181468 TGGCAAATTGTTGAATGTGAGCA 60.181 39.130 0.00 0.00 36.83 4.26
2126 2243 3.184986 GTGGCAAATTGTTGAATGTGAGC 59.815 43.478 0.00 0.00 36.83 4.26
2127 2244 4.624015 AGTGGCAAATTGTTGAATGTGAG 58.376 39.130 0.00 0.00 36.83 3.51
2128 2245 4.341806 AGAGTGGCAAATTGTTGAATGTGA 59.658 37.500 0.00 0.00 36.83 3.58
2129 2246 4.624015 AGAGTGGCAAATTGTTGAATGTG 58.376 39.130 0.00 0.00 36.83 3.21
2130 2247 4.942761 AGAGTGGCAAATTGTTGAATGT 57.057 36.364 0.00 0.00 36.83 2.71
2131 2248 5.808540 CCATAGAGTGGCAAATTGTTGAATG 59.191 40.000 0.00 0.00 42.12 2.67
2132 2249 5.969423 CCATAGAGTGGCAAATTGTTGAAT 58.031 37.500 0.00 0.00 42.12 2.57
2133 2250 5.389859 CCATAGAGTGGCAAATTGTTGAA 57.610 39.130 0.00 0.00 42.12 2.69
2146 2263 3.118261 TGGCTAGCTTTTCCCATAGAGTG 60.118 47.826 15.72 0.00 0.00 3.51
2147 2264 3.115390 TGGCTAGCTTTTCCCATAGAGT 58.885 45.455 15.72 0.00 0.00 3.24
2148 2265 3.845781 TGGCTAGCTTTTCCCATAGAG 57.154 47.619 15.72 0.00 0.00 2.43
2149 2266 4.079787 ACATTGGCTAGCTTTTCCCATAGA 60.080 41.667 15.72 0.00 0.00 1.98
2150 2267 4.210331 ACATTGGCTAGCTTTTCCCATAG 58.790 43.478 15.72 1.50 0.00 2.23
2151 2268 4.207165 GACATTGGCTAGCTTTTCCCATA 58.793 43.478 15.72 0.00 0.00 2.74
2152 2269 3.026694 GACATTGGCTAGCTTTTCCCAT 58.973 45.455 15.72 0.00 0.00 4.00
2153 2270 2.224992 TGACATTGGCTAGCTTTTCCCA 60.225 45.455 15.72 0.00 0.00 4.37
2154 2271 2.446435 TGACATTGGCTAGCTTTTCCC 58.554 47.619 15.72 0.00 0.00 3.97
2155 2272 3.255642 TGTTGACATTGGCTAGCTTTTCC 59.744 43.478 15.72 0.00 0.00 3.13
2156 2273 4.503741 TGTTGACATTGGCTAGCTTTTC 57.496 40.909 15.72 5.18 0.00 2.29
2157 2274 5.476599 TGTATGTTGACATTGGCTAGCTTTT 59.523 36.000 15.72 0.00 37.76 2.27
2158 2275 5.009631 TGTATGTTGACATTGGCTAGCTTT 58.990 37.500 15.72 0.00 37.76 3.51
2159 2276 4.588899 TGTATGTTGACATTGGCTAGCTT 58.411 39.130 15.72 0.00 37.76 3.74
2160 2277 4.220693 TGTATGTTGACATTGGCTAGCT 57.779 40.909 15.72 0.00 37.76 3.32
2161 2278 4.155826 TGTTGTATGTTGACATTGGCTAGC 59.844 41.667 6.04 6.04 37.76 3.42
2162 2279 5.878332 TGTTGTATGTTGACATTGGCTAG 57.122 39.130 1.46 0.00 37.76 3.42
2163 2280 5.125257 CCATGTTGTATGTTGACATTGGCTA 59.875 40.000 1.46 0.00 37.76 3.93
2164 2281 4.082081 CCATGTTGTATGTTGACATTGGCT 60.082 41.667 1.46 0.00 37.76 4.75
2165 2282 4.082300 TCCATGTTGTATGTTGACATTGGC 60.082 41.667 1.46 0.00 37.76 4.52
2166 2283 5.183713 ACTCCATGTTGTATGTTGACATTGG 59.816 40.000 1.46 3.33 37.76 3.16
2167 2284 6.258230 ACTCCATGTTGTATGTTGACATTG 57.742 37.500 1.46 0.00 37.76 2.82
2168 2285 6.348458 CGAACTCCATGTTGTATGTTGACATT 60.348 38.462 1.46 0.00 39.30 2.71
2169 2286 5.122239 CGAACTCCATGTTGTATGTTGACAT 59.878 40.000 1.84 1.84 39.30 3.06
2170 2287 4.450757 CGAACTCCATGTTGTATGTTGACA 59.549 41.667 0.00 0.00 39.30 3.58
2171 2288 4.451096 ACGAACTCCATGTTGTATGTTGAC 59.549 41.667 0.00 0.00 39.30 3.18
2172 2289 4.450757 CACGAACTCCATGTTGTATGTTGA 59.549 41.667 0.00 0.00 39.30 3.18
2173 2290 4.450757 TCACGAACTCCATGTTGTATGTTG 59.549 41.667 0.00 0.00 39.30 3.33
2174 2291 4.637276 TCACGAACTCCATGTTGTATGTT 58.363 39.130 0.00 0.00 39.30 2.71
2175 2292 4.265904 TCACGAACTCCATGTTGTATGT 57.734 40.909 0.00 0.00 39.30 2.29
2176 2293 5.582269 AGAATCACGAACTCCATGTTGTATG 59.418 40.000 0.00 0.00 39.30 2.39
2177 2294 5.734720 AGAATCACGAACTCCATGTTGTAT 58.265 37.500 0.00 0.00 39.30 2.29
2178 2295 5.147330 AGAATCACGAACTCCATGTTGTA 57.853 39.130 0.00 0.00 39.30 2.41
2179 2296 4.008074 AGAATCACGAACTCCATGTTGT 57.992 40.909 0.00 0.00 39.30 3.32
2180 2297 5.812127 TGATAGAATCACGAACTCCATGTTG 59.188 40.000 0.00 0.00 34.99 3.33
2181 2298 5.977635 TGATAGAATCACGAACTCCATGTT 58.022 37.500 0.00 0.00 36.54 2.71
2182 2299 5.598416 TGATAGAATCACGAACTCCATGT 57.402 39.130 0.00 0.00 33.59 3.21
2183 2300 6.365518 CAGATGATAGAATCACGAACTCCATG 59.634 42.308 0.00 0.00 43.01 3.66
2184 2301 6.453943 CAGATGATAGAATCACGAACTCCAT 58.546 40.000 0.00 0.00 43.01 3.41
2185 2302 5.221322 CCAGATGATAGAATCACGAACTCCA 60.221 44.000 0.00 0.00 43.01 3.86
2186 2303 5.010112 TCCAGATGATAGAATCACGAACTCC 59.990 44.000 0.00 0.00 43.01 3.85
2187 2304 6.078202 TCCAGATGATAGAATCACGAACTC 57.922 41.667 0.00 0.00 43.01 3.01
2188 2305 6.471233 TTCCAGATGATAGAATCACGAACT 57.529 37.500 0.00 0.00 43.01 3.01
2189 2306 5.176590 GCTTCCAGATGATAGAATCACGAAC 59.823 44.000 0.00 0.00 43.01 3.95
2190 2307 5.069648 AGCTTCCAGATGATAGAATCACGAA 59.930 40.000 0.00 0.00 43.01 3.85
2191 2308 4.586421 AGCTTCCAGATGATAGAATCACGA 59.414 41.667 0.00 0.00 43.01 4.35
2192 2309 4.880759 AGCTTCCAGATGATAGAATCACG 58.119 43.478 0.00 0.00 43.01 4.35
2193 2310 5.695816 GTGAGCTTCCAGATGATAGAATCAC 59.304 44.000 0.00 0.00 43.01 3.06
2194 2311 5.601729 AGTGAGCTTCCAGATGATAGAATCA 59.398 40.000 0.00 0.00 44.55 2.57
2195 2312 6.100404 AGTGAGCTTCCAGATGATAGAATC 57.900 41.667 0.00 0.00 0.00 2.52
2196 2313 7.609097 TTAGTGAGCTTCCAGATGATAGAAT 57.391 36.000 0.00 0.00 0.00 2.40
2197 2314 7.440198 CATTAGTGAGCTTCCAGATGATAGAA 58.560 38.462 0.00 0.00 0.00 2.10
2198 2315 6.518032 GCATTAGTGAGCTTCCAGATGATAGA 60.518 42.308 0.00 0.00 0.00 1.98
2199 2316 5.638657 GCATTAGTGAGCTTCCAGATGATAG 59.361 44.000 0.00 0.00 0.00 2.08
2200 2317 5.512060 GGCATTAGTGAGCTTCCAGATGATA 60.512 44.000 0.00 0.00 0.00 2.15
2201 2318 4.387598 GCATTAGTGAGCTTCCAGATGAT 58.612 43.478 0.00 0.00 0.00 2.45
2202 2319 3.432749 GGCATTAGTGAGCTTCCAGATGA 60.433 47.826 0.00 0.00 0.00 2.92
2203 2320 2.877168 GGCATTAGTGAGCTTCCAGATG 59.123 50.000 0.00 0.00 0.00 2.90
2204 2321 2.484417 CGGCATTAGTGAGCTTCCAGAT 60.484 50.000 0.00 0.00 0.00 2.90
2205 2322 1.134699 CGGCATTAGTGAGCTTCCAGA 60.135 52.381 0.00 0.00 0.00 3.86
2206 2323 1.293924 CGGCATTAGTGAGCTTCCAG 58.706 55.000 0.00 0.00 0.00 3.86
2207 2324 0.107703 CCGGCATTAGTGAGCTTCCA 60.108 55.000 0.00 0.00 0.00 3.53
2208 2325 0.815615 CCCGGCATTAGTGAGCTTCC 60.816 60.000 0.00 0.00 0.00 3.46
2209 2326 0.178068 TCCCGGCATTAGTGAGCTTC 59.822 55.000 0.00 0.00 0.00 3.86
2210 2327 0.107654 GTCCCGGCATTAGTGAGCTT 60.108 55.000 0.00 0.00 0.00 3.74
2211 2328 0.978146 AGTCCCGGCATTAGTGAGCT 60.978 55.000 0.00 0.00 0.00 4.09
2212 2329 0.107654 AAGTCCCGGCATTAGTGAGC 60.108 55.000 0.00 0.00 0.00 4.26
2213 2330 2.693591 TCTAAGTCCCGGCATTAGTGAG 59.306 50.000 14.50 0.00 0.00 3.51
2214 2331 2.693591 CTCTAAGTCCCGGCATTAGTGA 59.306 50.000 14.50 0.00 0.00 3.41
2215 2332 2.803492 GCTCTAAGTCCCGGCATTAGTG 60.803 54.545 14.50 13.48 0.00 2.74
2216 2333 1.413077 GCTCTAAGTCCCGGCATTAGT 59.587 52.381 14.50 0.00 0.00 2.24
2217 2334 1.412710 TGCTCTAAGTCCCGGCATTAG 59.587 52.381 0.00 4.03 0.00 1.73
2218 2335 1.491668 TGCTCTAAGTCCCGGCATTA 58.508 50.000 0.00 0.00 0.00 1.90
2219 2336 0.839946 ATGCTCTAAGTCCCGGCATT 59.160 50.000 0.00 0.00 40.12 3.56
2220 2337 0.394565 GATGCTCTAAGTCCCGGCAT 59.605 55.000 0.00 0.00 44.73 4.40
2221 2338 0.687757 AGATGCTCTAAGTCCCGGCA 60.688 55.000 0.00 0.00 37.32 5.69
2222 2339 0.032815 GAGATGCTCTAAGTCCCGGC 59.967 60.000 0.00 0.00 0.00 6.13
2223 2340 0.676736 GGAGATGCTCTAAGTCCCGG 59.323 60.000 0.00 0.00 0.00 5.73
2224 2341 1.339610 CTGGAGATGCTCTAAGTCCCG 59.660 57.143 0.00 0.00 0.00 5.14
2225 2342 1.069978 GCTGGAGATGCTCTAAGTCCC 59.930 57.143 0.00 0.00 0.00 4.46
2226 2343 1.069978 GGCTGGAGATGCTCTAAGTCC 59.930 57.143 0.00 0.00 0.00 3.85
2227 2344 1.269517 CGGCTGGAGATGCTCTAAGTC 60.270 57.143 0.00 0.00 0.00 3.01
2228 2345 0.749649 CGGCTGGAGATGCTCTAAGT 59.250 55.000 0.00 0.00 0.00 2.24
2229 2346 0.599728 GCGGCTGGAGATGCTCTAAG 60.600 60.000 0.00 0.00 0.00 2.18
2230 2347 1.443407 GCGGCTGGAGATGCTCTAA 59.557 57.895 0.00 0.00 0.00 2.10
2231 2348 2.849964 CGCGGCTGGAGATGCTCTA 61.850 63.158 0.00 0.00 0.00 2.43
2232 2349 4.218578 CGCGGCTGGAGATGCTCT 62.219 66.667 0.00 0.00 0.00 4.09
2260 2377 1.182667 AAAAATTACCTGCGGAGGCC 58.817 50.000 24.53 0.00 44.33 5.19
2295 2412 1.135228 GGGTGCGACTGTGTTGTTTTT 60.135 47.619 0.00 0.00 0.00 1.94
2296 2413 0.454196 GGGTGCGACTGTGTTGTTTT 59.546 50.000 0.00 0.00 0.00 2.43
2297 2414 1.381165 GGGGTGCGACTGTGTTGTTT 61.381 55.000 0.00 0.00 0.00 2.83
2298 2415 1.822186 GGGGTGCGACTGTGTTGTT 60.822 57.895 0.00 0.00 0.00 2.83
2299 2416 2.203153 GGGGTGCGACTGTGTTGT 60.203 61.111 0.00 0.00 0.00 3.32
2300 2417 2.978010 GGGGGTGCGACTGTGTTG 60.978 66.667 0.00 0.00 0.00 3.33
2301 2418 3.476031 CTGGGGGTGCGACTGTGTT 62.476 63.158 0.00 0.00 0.00 3.32
2302 2419 3.941188 CTGGGGGTGCGACTGTGT 61.941 66.667 0.00 0.00 0.00 3.72
2303 2420 4.704833 CCTGGGGGTGCGACTGTG 62.705 72.222 0.00 0.00 0.00 3.66
2304 2421 4.954118 TCCTGGGGGTGCGACTGT 62.954 66.667 0.00 0.00 0.00 3.55
2305 2422 4.087892 CTCCTGGGGGTGCGACTG 62.088 72.222 0.00 0.00 0.00 3.51
2313 2430 3.523374 AAAAACGGGCTCCTGGGGG 62.523 63.158 0.00 0.00 0.00 5.40
2314 2431 1.977009 GAAAAACGGGCTCCTGGGG 60.977 63.158 0.00 0.00 0.00 4.96
2315 2432 2.332654 CGAAAAACGGGCTCCTGGG 61.333 63.158 0.00 0.00 38.46 4.45
2316 2433 2.978018 GCGAAAAACGGGCTCCTGG 61.978 63.158 0.00 0.00 42.83 4.45
2317 2434 2.561373 GCGAAAAACGGGCTCCTG 59.439 61.111 0.00 0.00 42.83 3.86
2318 2435 2.671963 GGCGAAAAACGGGCTCCT 60.672 61.111 0.00 0.00 42.83 3.69
2319 2436 4.097863 CGGCGAAAAACGGGCTCC 62.098 66.667 0.00 0.00 42.83 4.70
2320 2437 4.097863 CCGGCGAAAAACGGGCTC 62.098 66.667 9.30 0.00 46.08 4.70
2325 2442 2.428403 CCAAGCCGGCGAAAAACG 60.428 61.111 23.20 5.28 45.66 3.60
2326 2443 2.049526 CCCAAGCCGGCGAAAAAC 60.050 61.111 23.20 0.00 0.00 2.43
2327 2444 3.984749 GCCCAAGCCGGCGAAAAA 61.985 61.111 23.20 0.00 39.64 1.94
2375 2492 2.970036 AAAAACGTTTCGGCCGACGC 62.970 55.000 31.80 23.98 42.67 5.19
2376 2493 1.010908 AAAAACGTTTCGGCCGACG 60.011 52.632 30.69 30.69 44.34 5.12
2377 2494 0.931202 CCAAAAACGTTTCGGCCGAC 60.931 55.000 31.19 17.92 0.00 4.79
2378 2495 1.355916 CCAAAAACGTTTCGGCCGA 59.644 52.632 27.28 27.28 0.00 5.54
2379 2496 2.297195 GCCAAAAACGTTTCGGCCG 61.297 57.895 30.37 22.12 36.08 6.13
2380 2497 2.297195 CGCCAAAAACGTTTCGGCC 61.297 57.895 32.38 21.48 37.50 6.13
2381 2498 2.923177 GCGCCAAAAACGTTTCGGC 61.923 57.895 30.56 30.56 37.46 5.54
2382 2499 2.631630 CGCGCCAAAAACGTTTCGG 61.632 57.895 15.01 18.05 0.00 4.30
2383 2500 1.194896 TTCGCGCCAAAAACGTTTCG 61.195 50.000 15.01 14.18 0.00 3.46
2384 2501 0.915227 TTTCGCGCCAAAAACGTTTC 59.085 45.000 15.01 0.35 0.00 2.78
2385 2502 1.059407 GTTTTCGCGCCAAAAACGTTT 59.941 42.857 22.35 7.96 37.00 3.60
2386 2503 0.641275 GTTTTCGCGCCAAAAACGTT 59.359 45.000 22.35 0.00 37.00 3.99
2387 2504 1.140999 GGTTTTCGCGCCAAAAACGT 61.141 50.000 26.44 0.00 44.02 3.99
2388 2505 1.556011 GGTTTTCGCGCCAAAAACG 59.444 52.632 26.44 5.07 44.02 3.60
2389 2506 1.556011 CGGTTTTCGCGCCAAAAAC 59.444 52.632 25.99 25.99 42.93 2.43
2390 2507 1.589196 CCGGTTTTCGCGCCAAAAA 60.589 52.632 14.53 12.23 37.59 1.94
2391 2508 2.026301 CCGGTTTTCGCGCCAAAA 59.974 55.556 8.92 8.92 37.59 2.44
2392 2509 4.632458 GCCGGTTTTCGCGCCAAA 62.632 61.111 1.90 0.00 37.59 3.28
2413 2530 3.672295 GAGTCGCTGCCAAGGAGGG 62.672 68.421 0.00 0.00 38.09 4.30
2414 2531 2.125350 GAGTCGCTGCCAAGGAGG 60.125 66.667 0.00 0.00 41.84 4.30
2415 2532 2.507992 CGAGTCGCTGCCAAGGAG 60.508 66.667 0.00 0.00 0.00 3.69
2416 2533 4.069232 CCGAGTCGCTGCCAAGGA 62.069 66.667 7.12 0.00 0.00 3.36
2418 2535 4.749310 AGCCGAGTCGCTGCCAAG 62.749 66.667 7.12 0.00 37.82 3.61
2419 2536 4.742201 GAGCCGAGTCGCTGCCAA 62.742 66.667 7.12 0.00 39.87 4.52
2421 2538 4.443266 AAGAGCCGAGTCGCTGCC 62.443 66.667 7.12 1.01 39.87 4.85
2422 2539 2.883253 GAAGAGCCGAGTCGCTGC 60.883 66.667 7.12 6.32 39.87 5.25
2423 2540 1.226547 GAGAAGAGCCGAGTCGCTG 60.227 63.158 7.12 0.00 39.87 5.18
2424 2541 2.756025 CGAGAAGAGCCGAGTCGCT 61.756 63.158 7.12 8.14 43.42 4.93
2425 2542 2.277628 CGAGAAGAGCCGAGTCGC 60.278 66.667 7.12 2.73 0.00 5.19
2426 2543 2.277628 GCGAGAAGAGCCGAGTCG 60.278 66.667 5.29 5.29 0.00 4.18
2427 2544 2.103340 GGCGAGAAGAGCCGAGTC 59.897 66.667 0.00 0.00 45.58 3.36
2433 2550 3.251043 CGAAGCGGCGAGAAGAGC 61.251 66.667 12.98 0.00 0.00 4.09
2434 2551 1.870016 GACGAAGCGGCGAGAAGAG 60.870 63.158 12.98 0.00 34.83 2.85
2435 2552 2.178521 GACGAAGCGGCGAGAAGA 59.821 61.111 12.98 0.00 34.83 2.87
2442 2559 3.701604 ATGAGGACGACGAAGCGGC 62.702 63.158 0.00 0.00 38.96 6.53
2443 2560 1.586564 GATGAGGACGACGAAGCGG 60.587 63.158 0.00 0.00 35.12 5.52
2444 2561 1.934956 CGATGAGGACGACGAAGCG 60.935 63.158 0.00 0.00 37.29 4.68
2445 2562 0.862283 GACGATGAGGACGACGAAGC 60.862 60.000 0.00 0.00 34.70 3.86
2446 2563 0.727970 AGACGATGAGGACGACGAAG 59.272 55.000 0.00 0.00 34.70 3.79
2447 2564 0.725686 GAGACGATGAGGACGACGAA 59.274 55.000 0.00 0.00 34.70 3.85
2448 2565 1.419107 CGAGACGATGAGGACGACGA 61.419 60.000 0.00 0.00 34.70 4.20
2449 2566 1.012124 CGAGACGATGAGGACGACG 60.012 63.158 0.00 0.00 34.70 5.12
2450 2567 1.352404 CCGAGACGATGAGGACGAC 59.648 63.158 0.00 0.00 34.70 4.34
2451 2568 0.675837 AACCGAGACGATGAGGACGA 60.676 55.000 0.00 0.00 34.70 4.20
2452 2569 0.248134 GAACCGAGACGATGAGGACG 60.248 60.000 0.00 0.00 0.00 4.79
2453 2570 1.064357 GAGAACCGAGACGATGAGGAC 59.936 57.143 0.00 0.00 0.00 3.85
2454 2571 1.380524 GAGAACCGAGACGATGAGGA 58.619 55.000 0.00 0.00 0.00 3.71
2455 2572 0.028242 CGAGAACCGAGACGATGAGG 59.972 60.000 0.00 0.00 41.76 3.86
2456 2573 0.590230 GCGAGAACCGAGACGATGAG 60.590 60.000 0.00 0.00 41.76 2.90
2457 2574 1.428219 GCGAGAACCGAGACGATGA 59.572 57.895 0.00 0.00 41.76 2.92
2458 2575 1.934956 CGCGAGAACCGAGACGATG 60.935 63.158 0.00 0.00 40.62 3.84
2459 2576 2.104859 TCGCGAGAACCGAGACGAT 61.105 57.895 3.71 0.00 41.99 3.73
2460 2577 2.739671 TCGCGAGAACCGAGACGA 60.740 61.111 3.71 0.00 41.99 4.20
2463 2580 1.642037 ATTCGTCGCGAGAACCGAGA 61.642 55.000 10.24 6.62 44.54 4.04
2464 2581 0.027194 TATTCGTCGCGAGAACCGAG 59.973 55.000 10.24 0.00 45.01 4.63
2465 2582 0.447406 TTATTCGTCGCGAGAACCGA 59.553 50.000 10.24 12.91 45.01 4.69
2466 2583 1.261989 TTTATTCGTCGCGAGAACCG 58.738 50.000 10.24 10.24 45.01 4.44
2467 2584 2.596807 GCATTTATTCGTCGCGAGAACC 60.597 50.000 10.24 0.00 45.01 3.62
2468 2585 2.596807 GGCATTTATTCGTCGCGAGAAC 60.597 50.000 10.24 0.00 45.01 3.01
2469 2586 1.591158 GGCATTTATTCGTCGCGAGAA 59.409 47.619 10.24 15.92 45.01 2.87
2470 2587 1.205657 GGCATTTATTCGTCGCGAGA 58.794 50.000 10.24 6.61 37.14 4.04
2471 2588 0.927537 TGGCATTTATTCGTCGCGAG 59.072 50.000 10.24 3.82 37.14 5.03
2472 2589 1.360820 TTGGCATTTATTCGTCGCGA 58.639 45.000 3.71 3.71 0.00 5.87
2473 2590 2.101125 CTTTGGCATTTATTCGTCGCG 58.899 47.619 0.00 0.00 0.00 5.87
2474 2591 1.846175 GCTTTGGCATTTATTCGTCGC 59.154 47.619 0.00 0.00 38.54 5.19
2475 2592 3.100817 CAGCTTTGGCATTTATTCGTCG 58.899 45.455 0.00 0.00 41.70 5.12
2476 2593 2.854185 GCAGCTTTGGCATTTATTCGTC 59.146 45.455 0.00 0.00 41.70 4.20
2477 2594 2.417243 GGCAGCTTTGGCATTTATTCGT 60.417 45.455 0.00 0.00 41.70 3.85
2478 2595 2.195922 GGCAGCTTTGGCATTTATTCG 58.804 47.619 0.00 0.00 41.70 3.34
2479 2596 2.195922 CGGCAGCTTTGGCATTTATTC 58.804 47.619 0.46 0.00 41.70 1.75
2480 2597 1.740043 GCGGCAGCTTTGGCATTTATT 60.740 47.619 0.00 0.00 41.70 1.40
2481 2598 0.179103 GCGGCAGCTTTGGCATTTAT 60.179 50.000 0.00 0.00 41.70 1.40
2482 2599 1.215117 GCGGCAGCTTTGGCATTTA 59.785 52.632 0.00 0.00 41.70 1.40
2483 2600 2.047939 GCGGCAGCTTTGGCATTT 60.048 55.556 0.00 0.00 41.70 2.32
2484 2601 4.424566 CGCGGCAGCTTTGGCATT 62.425 61.111 7.38 0.00 42.32 3.56
2509 2626 4.459089 GAGGAGGCTGACCGGCAC 62.459 72.222 0.00 0.00 42.76 5.01
2512 2629 2.370445 AATGGAGGAGGCTGACCGG 61.370 63.158 0.00 0.00 42.76 5.28
2513 2630 1.153289 CAATGGAGGAGGCTGACCG 60.153 63.158 0.00 0.00 42.76 4.79
2514 2631 0.842635 ATCAATGGAGGAGGCTGACC 59.157 55.000 0.00 0.00 0.00 4.02
2515 2632 1.964552 CATCAATGGAGGAGGCTGAC 58.035 55.000 0.00 0.00 0.00 3.51
2516 2633 0.182061 GCATCAATGGAGGAGGCTGA 59.818 55.000 0.00 0.00 38.88 4.26
2517 2634 0.822532 GGCATCAATGGAGGAGGCTG 60.823 60.000 0.00 0.00 41.46 4.85
2518 2635 0.992431 AGGCATCAATGGAGGAGGCT 60.992 55.000 0.00 0.00 41.46 4.58
2519 2636 0.536915 GAGGCATCAATGGAGGAGGC 60.537 60.000 0.00 0.00 41.04 4.70
2520 2637 0.841961 TGAGGCATCAATGGAGGAGG 59.158 55.000 0.00 0.00 30.61 4.30
2521 2638 1.809271 CGTGAGGCATCAATGGAGGAG 60.809 57.143 0.92 0.00 37.14 3.69
2522 2639 0.178767 CGTGAGGCATCAATGGAGGA 59.821 55.000 0.92 0.00 37.14 3.71
2523 2640 2.699073 CGTGAGGCATCAATGGAGG 58.301 57.895 0.92 0.00 37.14 4.30
2540 2657 4.124351 TCTTCACTACGCCGCCCG 62.124 66.667 0.00 0.00 44.21 6.13
2541 2658 2.508663 GTCTTCACTACGCCGCCC 60.509 66.667 0.00 0.00 0.00 6.13
2542 2659 2.508663 GGTCTTCACTACGCCGCC 60.509 66.667 0.00 0.00 0.00 6.13
2543 2660 2.879462 CGGTCTTCACTACGCCGC 60.879 66.667 0.00 0.00 35.90 6.53
2544 2661 2.202570 CCGGTCTTCACTACGCCG 60.203 66.667 0.00 0.00 41.82 6.46
2545 2662 1.153881 GTCCGGTCTTCACTACGCC 60.154 63.158 0.00 0.00 0.00 5.68
2546 2663 1.513586 CGTCCGGTCTTCACTACGC 60.514 63.158 0.00 0.00 0.00 4.42
2547 2664 0.179205 GTCGTCCGGTCTTCACTACG 60.179 60.000 0.00 0.71 0.00 3.51
2548 2665 0.179205 CGTCGTCCGGTCTTCACTAC 60.179 60.000 0.00 0.00 0.00 2.73
2549 2666 1.915614 GCGTCGTCCGGTCTTCACTA 61.916 60.000 0.00 0.00 36.94 2.74
2550 2667 2.952245 CGTCGTCCGGTCTTCACT 59.048 61.111 0.00 0.00 0.00 3.41
2551 2668 2.804090 GCGTCGTCCGGTCTTCAC 60.804 66.667 0.00 0.00 36.94 3.18
2552 2669 4.394078 CGCGTCGTCCGGTCTTCA 62.394 66.667 0.00 0.00 36.94 3.02
2579 2696 3.411351 GTGTGTACGCGTGGCAGG 61.411 66.667 24.59 2.14 0.00 4.85
2580 2697 3.762992 CGTGTGTACGCGTGGCAG 61.763 66.667 24.59 5.56 44.11 4.85
2617 2734 1.646189 GCTTATATAGGCAGAGGCGC 58.354 55.000 11.70 0.00 42.47 6.53
2625 2742 0.326927 TTGGGGCGGCTTATATAGGC 59.673 55.000 9.56 8.29 45.60 3.93
2626 2743 1.679032 GCTTGGGGCGGCTTATATAGG 60.679 57.143 9.56 0.00 0.00 2.57
2627 2744 1.739067 GCTTGGGGCGGCTTATATAG 58.261 55.000 9.56 0.00 0.00 1.31
2628 2745 3.948735 GCTTGGGGCGGCTTATATA 57.051 52.632 9.56 0.00 0.00 0.86
2629 2746 4.821935 GCTTGGGGCGGCTTATAT 57.178 55.556 9.56 0.00 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.