Multiple sequence alignment - TraesCS3B01G419500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G419500 chr3B 100.000 3476 0 0 1 3476 655864156 655860681 0.000000e+00 6420.0
1 TraesCS3B01G419500 chr3B 84.830 501 55 7 2 500 753267795 753268276 5.220000e-133 484.0
2 TraesCS3B01G419500 chr3A 95.238 2835 89 22 658 3476 638058245 638061049 0.000000e+00 4446.0
3 TraesCS3B01G419500 chr3D 93.606 2987 127 27 530 3476 496749108 496746146 0.000000e+00 4399.0
4 TraesCS3B01G419500 chr1B 86.066 488 47 8 6 491 600980140 600979672 4.000000e-139 505.0
5 TraesCS3B01G419500 chr1B 86.925 413 48 6 2 412 475286234 475285826 3.160000e-125 459.0
6 TraesCS3B01G419500 chr7B 85.178 506 51 13 2 503 707963567 707964052 6.700000e-137 497.0
7 TraesCS3B01G419500 chr2D 89.594 394 38 3 2 393 575827546 575827938 6.700000e-137 497.0
8 TraesCS3B01G419500 chr5B 84.940 498 53 7 6 501 538045104 538044627 5.220000e-133 484.0
9 TraesCS3B01G419500 chr2B 84.127 504 58 9 2 503 421080269 421080752 5.250000e-128 468.0
10 TraesCS3B01G419500 chr2B 84.306 497 57 11 6 500 421077653 421078130 1.890000e-127 466.0
11 TraesCS3B01G419500 chr6B 88.071 394 43 4 2 393 678533403 678533794 6.800000e-127 464.0
12 TraesCS3B01G419500 chr5D 88.041 393 43 4 2 393 477991645 477992034 2.440000e-126 462.0
13 TraesCS3B01G419500 chr4B 86.124 418 51 7 2 414 636833428 636833843 8.850000e-121 444.0
14 TraesCS3B01G419500 chr5A 90.476 63 4 1 443 505 459677564 459677504 8.000000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G419500 chr3B 655860681 655864156 3475 True 6420 6420 100.0000 1 3476 1 chr3B.!!$R1 3475
1 TraesCS3B01G419500 chr3A 638058245 638061049 2804 False 4446 4446 95.2380 658 3476 1 chr3A.!!$F1 2818
2 TraesCS3B01G419500 chr3D 496746146 496749108 2962 True 4399 4399 93.6060 530 3476 1 chr3D.!!$R1 2946
3 TraesCS3B01G419500 chr2B 421077653 421080752 3099 False 467 468 84.2165 2 503 2 chr2B.!!$F1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 390 0.174389 CCTCACCACCGATGACTGAG 59.826 60.0 0.00 0.00 33.38 3.35 F
388 391 0.174389 CTCACCACCGATGACTGAGG 59.826 60.0 0.00 0.00 31.47 3.86 F
400 403 0.249238 GACTGAGGCCGCTGATGTAG 60.249 60.0 19.91 4.03 0.00 2.74 F
728 1890 0.808755 GTGGTTGGATTTGCTACGGG 59.191 55.0 0.00 0.00 0.00 5.28 F
1917 4037 0.253044 ATGGTGTCACCCCTGATTCG 59.747 55.0 19.57 0.00 37.50 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 3791 0.745486 CGATGCTGACCATTGGCTCA 60.745 55.000 1.54 5.32 33.29 4.26 R
1677 3797 1.089920 GCTGAACGATGCTGACCATT 58.910 50.000 0.00 0.00 33.29 3.16 R
1884 4004 3.052566 TGACACCATAGGACCTCATCTCT 60.053 47.826 0.00 0.00 0.00 3.10 R
2407 4527 2.495669 AGCTCTTACAGTTCTGAGAGGC 59.504 50.000 15.44 12.29 36.88 4.70 R
3147 5290 4.188247 TGGGTGTCGATACTTCTTTGAG 57.812 45.455 12.29 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.467962 TCACGAACCACAAAACGCA 58.532 47.368 0.00 0.00 0.00 5.24
34 35 1.746615 GCAGCACACGATCCACCAT 60.747 57.895 0.00 0.00 0.00 3.55
35 36 1.985447 GCAGCACACGATCCACCATG 61.985 60.000 0.00 0.00 0.00 3.66
48 49 1.750399 ACCATGTTCCAGATGCCGC 60.750 57.895 0.00 0.00 0.00 6.53
49 50 1.452651 CCATGTTCCAGATGCCGCT 60.453 57.895 0.00 0.00 0.00 5.52
54 55 1.820906 TTCCAGATGCCGCTGATGC 60.821 57.895 4.63 0.00 38.14 3.91
79 80 0.463295 ACAATCTGCATCCGCTCCTG 60.463 55.000 0.00 0.00 39.64 3.86
93 94 1.952621 CTCCTGGACTACCTCCCAAA 58.047 55.000 0.00 0.00 38.49 3.28
98 99 0.535797 GGACTACCTCCCAAACTCCG 59.464 60.000 0.00 0.00 31.83 4.63
99 100 1.553706 GACTACCTCCCAAACTCCGA 58.446 55.000 0.00 0.00 0.00 4.55
102 103 0.252103 TACCTCCCAAACTCCGAGCT 60.252 55.000 0.00 0.00 0.00 4.09
105 106 1.831652 CTCCCAAACTCCGAGCTGGT 61.832 60.000 13.57 0.00 39.52 4.00
159 160 3.966215 GACACATGTCCACCACGG 58.034 61.111 0.00 0.00 39.07 4.94
166 167 1.497309 ATGTCCACCACGGGGATGTT 61.497 55.000 12.96 0.00 36.67 2.71
167 168 1.674322 GTCCACCACGGGGATGTTG 60.674 63.158 12.96 0.00 36.67 3.33
168 169 2.150719 TCCACCACGGGGATGTTGT 61.151 57.895 12.96 0.00 38.05 3.32
178 179 4.147322 GATGTTGTCGCCGCCACG 62.147 66.667 0.00 0.00 0.00 4.94
187 188 4.849310 GCCGCCACGCCATCCTTA 62.849 66.667 0.00 0.00 0.00 2.69
191 192 1.705337 CGCCACGCCATCCTTACTTG 61.705 60.000 0.00 0.00 0.00 3.16
218 219 4.017222 AGACTGATTTCCAAATCCATCCCA 60.017 41.667 9.12 0.00 43.19 4.37
220 221 4.467438 ACTGATTTCCAAATCCATCCCAAC 59.533 41.667 9.12 0.00 43.19 3.77
228 230 4.449672 CCAAATCCATCCCAACCATAGGAT 60.450 45.833 0.00 0.00 43.89 3.24
229 231 5.149976 CAAATCCATCCCAACCATAGGATT 58.850 41.667 0.00 0.00 45.11 3.01
238 240 3.070018 CAACCATAGGATTGATCGCCTC 58.930 50.000 5.01 0.00 35.73 4.70
242 244 1.687563 TAGGATTGATCGCCTCGTCA 58.312 50.000 5.01 0.00 35.73 4.35
252 254 1.415289 TCGCCTCGTCAGAGTAGGATA 59.585 52.381 2.55 0.00 42.86 2.59
254 256 2.160615 CGCCTCGTCAGAGTAGGATATG 59.839 54.545 2.55 0.00 42.86 1.78
261 263 7.028926 TCGTCAGAGTAGGATATGAAGAAAC 57.971 40.000 0.00 0.00 28.29 2.78
262 264 6.039493 TCGTCAGAGTAGGATATGAAGAAACC 59.961 42.308 0.00 0.00 28.29 3.27
282 284 0.176910 TTATTCAGTGCCGCCATCGA 59.823 50.000 0.00 0.00 38.10 3.59
306 308 1.602311 GCCGAAGCCAAGATGATGAT 58.398 50.000 0.00 0.00 0.00 2.45
307 309 1.952296 GCCGAAGCCAAGATGATGATT 59.048 47.619 0.00 0.00 0.00 2.57
384 387 1.990060 CCCCTCACCACCGATGACT 60.990 63.158 0.00 0.00 0.00 3.41
387 390 0.174389 CCTCACCACCGATGACTGAG 59.826 60.000 0.00 0.00 33.38 3.35
388 391 0.174389 CTCACCACCGATGACTGAGG 59.826 60.000 0.00 0.00 31.47 3.86
389 392 1.448540 CACCACCGATGACTGAGGC 60.449 63.158 0.00 0.00 0.00 4.70
390 393 2.187946 CCACCGATGACTGAGGCC 59.812 66.667 0.00 0.00 0.00 5.19
391 394 2.202797 CACCGATGACTGAGGCCG 60.203 66.667 0.00 0.00 0.00 6.13
392 395 4.148825 ACCGATGACTGAGGCCGC 62.149 66.667 0.00 0.00 0.00 6.53
393 396 3.842923 CCGATGACTGAGGCCGCT 61.843 66.667 8.34 0.00 0.00 5.52
394 397 2.584418 CGATGACTGAGGCCGCTG 60.584 66.667 11.81 11.81 0.00 5.18
395 398 2.895680 GATGACTGAGGCCGCTGA 59.104 61.111 19.91 0.00 0.00 4.26
396 399 1.445095 GATGACTGAGGCCGCTGAT 59.555 57.895 19.91 3.89 0.00 2.90
397 400 0.879400 GATGACTGAGGCCGCTGATG 60.879 60.000 19.91 4.31 0.00 3.07
398 401 1.620739 ATGACTGAGGCCGCTGATGT 61.621 55.000 19.91 7.46 0.00 3.06
399 402 0.970427 TGACTGAGGCCGCTGATGTA 60.970 55.000 19.91 0.70 0.00 2.29
400 403 0.249238 GACTGAGGCCGCTGATGTAG 60.249 60.000 19.91 4.03 0.00 2.74
401 404 1.068753 CTGAGGCCGCTGATGTAGG 59.931 63.158 8.34 0.00 0.00 3.18
402 405 2.374830 CTGAGGCCGCTGATGTAGGG 62.375 65.000 8.34 0.00 38.97 3.53
409 412 3.479203 CTGATGTAGGGGCGGCCA 61.479 66.667 30.95 9.65 0.00 5.36
410 413 3.757248 CTGATGTAGGGGCGGCCAC 62.757 68.421 30.95 19.08 0.00 5.01
456 459 1.609501 CGGTGGGGGAGACTCTTGA 60.610 63.158 1.74 0.00 0.00 3.02
500 503 1.798813 TCGAGCGGAAGAAAGAAAAGC 59.201 47.619 0.00 0.00 0.00 3.51
503 506 2.218603 AGCGGAAGAAAGAAAAGCGAA 58.781 42.857 0.00 0.00 0.00 4.70
506 1068 2.661979 CGGAAGAAAGAAAAGCGAACCG 60.662 50.000 0.00 0.00 0.00 4.44
516 1078 2.468532 AAGCGAACCGTTTGTTTCTG 57.531 45.000 0.43 0.00 37.29 3.02
522 1084 3.308866 CGAACCGTTTGTTTCTGTCTCTT 59.691 43.478 0.00 0.00 37.29 2.85
524 1086 4.138487 ACCGTTTGTTTCTGTCTCTTCT 57.862 40.909 0.00 0.00 0.00 2.85
525 1087 5.272283 ACCGTTTGTTTCTGTCTCTTCTA 57.728 39.130 0.00 0.00 0.00 2.10
526 1088 5.667466 ACCGTTTGTTTCTGTCTCTTCTAA 58.333 37.500 0.00 0.00 0.00 2.10
528 1090 6.424207 ACCGTTTGTTTCTGTCTCTTCTAATC 59.576 38.462 0.00 0.00 0.00 1.75
531 1093 9.193133 CGTTTGTTTCTGTCTCTTCTAATCTTA 57.807 33.333 0.00 0.00 0.00 2.10
590 1536 6.144402 GCACAAATGTGGTGATTTTTCTACTG 59.856 38.462 14.85 0.00 45.72 2.74
728 1890 0.808755 GTGGTTGGATTTGCTACGGG 59.191 55.000 0.00 0.00 0.00 5.28
805 2925 0.944386 GCAGTGCTTCTGTTCCGAAA 59.056 50.000 8.18 0.00 45.23 3.46
806 2926 1.537202 GCAGTGCTTCTGTTCCGAAAT 59.463 47.619 8.18 0.00 45.23 2.17
942 3062 3.009714 GACCCACCACTCCCCCTC 61.010 72.222 0.00 0.00 0.00 4.30
1063 3183 3.406200 AGAGCTCCCTTGCGCCAT 61.406 61.111 10.93 0.00 38.13 4.40
1161 3281 2.094539 CGCGATGTCGTGTGCTTG 59.905 61.111 0.00 0.00 44.02 4.01
1275 3395 1.736586 CGAGAGGAGTGATTCGGGG 59.263 63.158 0.00 0.00 0.00 5.73
1317 3437 3.329889 TGGTGCCGCTCCAAGGAT 61.330 61.111 11.76 0.00 31.50 3.24
1320 3440 2.688666 TGCCGCTCCAAGGATCCT 60.689 61.111 9.02 9.02 0.00 3.24
1335 3455 4.506255 CCTGCCGGATTGGGGGAC 62.506 72.222 5.05 0.00 38.63 4.46
1350 3470 2.333417 GGACGAGGAGCACGACAGA 61.333 63.158 0.00 0.00 34.70 3.41
1354 3474 3.691744 GAGGAGCACGACAGAGCGG 62.692 68.421 0.00 0.00 39.00 5.52
1632 3752 2.501128 GGCTATGCTCGTGAGGCA 59.499 61.111 0.00 0.00 40.55 4.75
1677 3797 1.588597 CGAACTCTCAGCTGAGCCA 59.411 57.895 34.48 20.04 41.80 4.75
1797 3917 4.335214 CCATTGGGATTGCCGTCA 57.665 55.556 0.00 0.00 35.59 4.35
1809 3929 1.144969 TGCCGTCATTCAACGACTTC 58.855 50.000 0.00 0.00 45.37 3.01
1842 3962 4.072131 TGTGCCATAGAAACCTCAAGTTC 58.928 43.478 0.00 0.00 37.88 3.01
1854 3974 3.181440 ACCTCAAGTTCAATCCTTCTGCA 60.181 43.478 0.00 0.00 0.00 4.41
1861 3981 4.276926 AGTTCAATCCTTCTGCACTTGTTC 59.723 41.667 0.00 0.00 0.00 3.18
1866 3986 2.172505 TCCTTCTGCACTTGTTCCTGAA 59.827 45.455 0.00 0.00 0.00 3.02
1869 3989 1.141657 TCTGCACTTGTTCCTGAAGCT 59.858 47.619 0.00 0.00 0.00 3.74
1884 4004 7.855784 TCCTGAAGCTATGGATATCTTAACA 57.144 36.000 2.05 0.00 0.00 2.41
1917 4037 0.253044 ATGGTGTCACCCCTGATTCG 59.747 55.000 19.57 0.00 37.50 3.34
2237 4357 3.069729 AGTTGTGAGTTAGTGGACACTCC 59.930 47.826 8.44 1.34 42.54 3.85
2433 4553 6.352016 TCTCAGAACTGTAAGAGCTTGATT 57.648 37.500 1.73 0.00 37.43 2.57
2600 4722 4.761739 TGATGAGTTGATGACCCTTGTTTC 59.238 41.667 0.00 0.00 0.00 2.78
2774 4900 7.966204 GCTTTTAGTATTTTATTGCCGTTCTGA 59.034 33.333 0.00 0.00 0.00 3.27
2840 4981 9.326413 GTATTGTATAGCAACTGTCCTTATGTT 57.674 33.333 0.00 0.00 40.28 2.71
2943 5086 5.008217 TGTTACAGTTCTGTTTTAAGCGCAT 59.992 36.000 11.47 0.00 0.00 4.73
2950 5093 5.984233 TCTGTTTTAAGCGCATATCGAAT 57.016 34.783 11.47 0.00 41.67 3.34
3147 5290 1.393539 TGCGTAATCAAAGAGCGCTTC 59.606 47.619 13.26 4.88 46.94 3.86
3210 5353 6.017440 TGACTCTAAAACGCTTAAATGCTGTT 60.017 34.615 0.00 0.00 33.66 3.16
3374 5527 6.183360 GCAGCAAAGAGTTTCATATGCTTTTC 60.183 38.462 0.00 0.00 41.82 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.199852 GCTGCGTTTTGTGGTTCGTG 61.200 55.000 0.00 0.00 0.00 4.35
4 5 0.179150 TGTGCTGCGTTTTGTGGTTC 60.179 50.000 0.00 0.00 0.00 3.62
5 6 0.457681 GTGTGCTGCGTTTTGTGGTT 60.458 50.000 0.00 0.00 0.00 3.67
6 7 1.138671 GTGTGCTGCGTTTTGTGGT 59.861 52.632 0.00 0.00 0.00 4.16
7 8 1.938814 CGTGTGCTGCGTTTTGTGG 60.939 57.895 0.00 0.00 0.00 4.17
8 9 0.316937 ATCGTGTGCTGCGTTTTGTG 60.317 50.000 0.00 0.00 0.00 3.33
9 10 0.041312 GATCGTGTGCTGCGTTTTGT 60.041 50.000 0.00 0.00 0.00 2.83
11 12 1.163420 TGGATCGTGTGCTGCGTTTT 61.163 50.000 0.00 0.00 0.00 2.43
12 13 1.596752 TGGATCGTGTGCTGCGTTT 60.597 52.632 0.00 0.00 0.00 3.60
13 14 2.030412 TGGATCGTGTGCTGCGTT 59.970 55.556 0.00 0.00 0.00 4.84
14 15 2.738521 GTGGATCGTGTGCTGCGT 60.739 61.111 0.00 0.00 0.00 5.24
15 16 3.490759 GGTGGATCGTGTGCTGCG 61.491 66.667 0.00 0.00 0.00 5.18
16 17 1.746615 ATGGTGGATCGTGTGCTGC 60.747 57.895 0.00 0.00 0.00 5.25
17 18 0.674581 ACATGGTGGATCGTGTGCTG 60.675 55.000 0.00 0.00 35.75 4.41
18 19 0.036732 AACATGGTGGATCGTGTGCT 59.963 50.000 0.00 0.00 37.02 4.40
34 35 0.745486 CATCAGCGGCATCTGGAACA 60.745 55.000 1.45 0.00 34.91 3.18
35 36 2.020131 CATCAGCGGCATCTGGAAC 58.980 57.895 1.45 0.00 34.91 3.62
54 55 1.012086 CGGATGCAGATTGTGGTCTG 58.988 55.000 0.00 0.00 46.59 3.51
79 80 0.535797 CGGAGTTTGGGAGGTAGTCC 59.464 60.000 0.00 0.00 46.10 3.85
148 149 2.150719 AACATCCCCGTGGTGGACA 61.151 57.895 0.00 0.00 42.00 4.02
178 179 3.686726 CAGTCTGTTCAAGTAAGGATGGC 59.313 47.826 0.00 0.00 0.00 4.40
187 188 6.015940 GGATTTGGAAATCAGTCTGTTCAAGT 60.016 38.462 12.90 0.00 45.10 3.16
191 192 5.964958 TGGATTTGGAAATCAGTCTGTTC 57.035 39.130 12.90 0.00 45.10 3.18
218 219 2.289072 CGAGGCGATCAATCCTATGGTT 60.289 50.000 0.00 0.00 31.71 3.67
220 221 1.273606 ACGAGGCGATCAATCCTATGG 59.726 52.381 0.00 0.00 31.71 2.74
228 230 1.671328 CTACTCTGACGAGGCGATCAA 59.329 52.381 0.00 0.00 41.71 2.57
229 231 1.300481 CTACTCTGACGAGGCGATCA 58.700 55.000 0.00 0.00 41.71 2.92
238 240 6.039941 AGGTTTCTTCATATCCTACTCTGACG 59.960 42.308 0.00 0.00 0.00 4.35
252 254 4.396166 CGGCACTGAATAAGGTTTCTTCAT 59.604 41.667 0.00 0.00 34.59 2.57
254 256 3.426292 GCGGCACTGAATAAGGTTTCTTC 60.426 47.826 0.00 0.00 34.59 2.87
261 263 0.947244 GATGGCGGCACTGAATAAGG 59.053 55.000 16.34 0.00 0.00 2.69
262 264 0.583438 CGATGGCGGCACTGAATAAG 59.417 55.000 16.34 0.00 0.00 1.73
380 383 0.970427 TACATCAGCGGCCTCAGTCA 60.970 55.000 0.00 0.00 0.00 3.41
384 387 2.434843 CCCTACATCAGCGGCCTCA 61.435 63.158 0.00 0.00 0.00 3.86
387 390 4.937431 GCCCCTACATCAGCGGCC 62.937 72.222 0.00 0.00 41.70 6.13
391 394 4.937431 GGCCGCCCCTACATCAGC 62.937 72.222 0.00 0.00 0.00 4.26
392 395 3.479203 TGGCCGCCCCTACATCAG 61.479 66.667 7.03 0.00 0.00 2.90
393 396 3.792736 GTGGCCGCCCCTACATCA 61.793 66.667 4.45 0.00 0.00 3.07
394 397 4.564110 GGTGGCCGCCCCTACATC 62.564 72.222 25.93 0.00 0.00 3.06
416 419 4.475444 CCTCCGGTGGCTCCCCTA 62.475 72.222 10.13 0.00 0.00 3.53
441 444 1.609501 CCGTCAAGAGTCTCCCCCA 60.610 63.158 0.00 0.00 0.00 4.96
443 446 1.827399 TTGCCGTCAAGAGTCTCCCC 61.827 60.000 0.00 0.00 0.00 4.81
444 447 1.671742 TTGCCGTCAAGAGTCTCCC 59.328 57.895 0.00 0.00 0.00 4.30
453 456 1.757682 AAAGGTGAACTTGCCGTCAA 58.242 45.000 0.00 0.00 39.96 3.18
456 459 2.052782 AGAAAAGGTGAACTTGCCGT 57.947 45.000 0.00 0.00 39.96 5.68
464 467 3.247648 CGCTCGAAGAAAGAAAAGGTGAA 59.752 43.478 0.00 0.00 34.09 3.18
467 470 2.143925 CCGCTCGAAGAAAGAAAAGGT 58.856 47.619 0.00 0.00 34.09 3.50
500 503 2.864343 AGAGACAGAAACAAACGGTTCG 59.136 45.455 0.00 0.00 39.29 3.95
503 506 4.138487 AGAAGAGACAGAAACAAACGGT 57.862 40.909 0.00 0.00 0.00 4.83
516 1078 9.973450 TGCACATAGATTAAGATTAGAAGAGAC 57.027 33.333 0.00 0.00 0.00 3.36
522 1084 8.159447 AGCCATTGCACATAGATTAAGATTAGA 58.841 33.333 0.00 0.00 41.13 2.10
524 1086 8.159447 AGAGCCATTGCACATAGATTAAGATTA 58.841 33.333 0.00 0.00 41.13 1.75
525 1087 7.002879 AGAGCCATTGCACATAGATTAAGATT 58.997 34.615 0.00 0.00 41.13 2.40
526 1088 6.540995 AGAGCCATTGCACATAGATTAAGAT 58.459 36.000 0.00 0.00 41.13 2.40
528 1090 6.630444 AAGAGCCATTGCACATAGATTAAG 57.370 37.500 0.00 0.00 41.13 1.85
531 1093 5.475909 CCATAAGAGCCATTGCACATAGATT 59.524 40.000 0.00 0.00 41.13 2.40
532 1094 5.008331 CCATAAGAGCCATTGCACATAGAT 58.992 41.667 0.00 0.00 41.13 1.98
534 1096 3.057736 GCCATAAGAGCCATTGCACATAG 60.058 47.826 0.00 0.00 41.13 2.23
714 1876 2.406596 GGTAACCCGTAGCAAATCCA 57.593 50.000 0.00 0.00 0.00 3.41
728 1890 1.078214 GGGTAACTGGGCCGGTAAC 60.078 63.158 20.50 11.75 0.00 2.50
840 2960 3.151022 CTGACGGAGGAGGAGGGC 61.151 72.222 0.00 0.00 0.00 5.19
841 2961 3.151022 GCTGACGGAGGAGGAGGG 61.151 72.222 0.00 0.00 0.00 4.30
842 2962 3.151022 GGCTGACGGAGGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
942 3062 0.906756 TTGGTCTGGAGCAGAGAGGG 60.907 60.000 2.80 0.00 41.46 4.30
1085 3205 1.762222 GCACATAGCGCGACGGATTT 61.762 55.000 12.10 0.00 0.00 2.17
1275 3395 4.400961 AACCGCAGCAGCCTCCTC 62.401 66.667 0.00 0.00 37.52 3.71
1335 3455 2.202544 GCTCTGTCGTGCTCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
1354 3474 4.980903 CCGTGCAAGCACCGCAAC 62.981 66.667 18.54 0.00 43.49 4.17
1440 3560 2.050351 ACAGCGGTGAACGTCTCG 60.050 61.111 23.44 0.00 46.52 4.04
1632 3752 4.497984 TGCCACACAACGCCCTGT 62.498 61.111 0.00 0.00 0.00 4.00
1638 3758 1.464608 CTCTTATGGTGCCACACAACG 59.535 52.381 0.00 0.00 39.66 4.10
1671 3791 0.745486 CGATGCTGACCATTGGCTCA 60.745 55.000 1.54 5.32 33.29 4.26
1677 3797 1.089920 GCTGAACGATGCTGACCATT 58.910 50.000 0.00 0.00 33.29 3.16
1797 3917 3.432252 CGCAGTTTAGGAAGTCGTTGAAT 59.568 43.478 0.00 0.00 0.00 2.57
1809 3929 4.057224 TGGCACACGCAGTTTAGG 57.943 55.556 0.00 0.00 41.61 2.69
1842 3962 3.057736 CAGGAACAAGTGCAGAAGGATTG 60.058 47.826 0.00 0.00 0.00 2.67
1854 3974 4.851639 ATCCATAGCTTCAGGAACAAGT 57.148 40.909 0.00 0.00 34.62 3.16
1861 3981 7.901029 TCTGTTAAGATATCCATAGCTTCAGG 58.099 38.462 0.37 0.00 39.46 3.86
1866 3986 8.891985 TCATCTCTGTTAAGATATCCATAGCT 57.108 34.615 0.00 0.00 34.21 3.32
1869 3989 9.249053 GACCTCATCTCTGTTAAGATATCCATA 57.751 37.037 0.00 0.00 34.21 2.74
1884 4004 3.052566 TGACACCATAGGACCTCATCTCT 60.053 47.826 0.00 0.00 0.00 3.10
1917 4037 4.319177 ACAGTAAGATGTTGAAGCTGGAC 58.681 43.478 0.00 0.00 0.00 4.02
2407 4527 2.495669 AGCTCTTACAGTTCTGAGAGGC 59.504 50.000 15.44 12.29 36.88 4.70
2433 4553 3.192844 CAGCAGTACCCTTCTTAGTTCGA 59.807 47.826 0.00 0.00 0.00 3.71
2554 4675 5.055265 TCACATAGTTCCAAACCAAAGGA 57.945 39.130 0.00 0.00 0.00 3.36
2774 4900 9.855021 GTCATTTTTGCAAACTACTATAATGGT 57.145 29.630 21.49 0.00 0.00 3.55
2943 5086 9.875691 CCTGAGATATGTCCATAAAATTCGATA 57.124 33.333 0.00 0.00 0.00 2.92
2950 5093 6.499106 TGCTCCTGAGATATGTCCATAAAA 57.501 37.500 0.00 0.00 0.00 1.52
3047 5190 6.503560 TGAAAACAGGTAAGGGAGAAACTA 57.496 37.500 0.00 0.00 0.00 2.24
3147 5290 4.188247 TGGGTGTCGATACTTCTTTGAG 57.812 45.455 12.29 0.00 0.00 3.02
3210 5353 6.869206 AAAGCACATAGGTTAAGGAGACTA 57.131 37.500 0.00 0.00 36.82 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.