Multiple sequence alignment - TraesCS3B01G414000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G414000 chr3B 100.000 3906 0 0 1 3906 650829643 650833548 0.000000e+00 7214.0
1 TraesCS3B01G414000 chr3D 94.951 2951 112 15 25 2948 488054384 488057324 0.000000e+00 4590.0
2 TraesCS3B01G414000 chr3D 83.673 245 20 7 2957 3191 488057387 488057621 3.060000e-51 213.0
3 TraesCS3B01G414000 chr3D 89.655 58 2 3 3852 3906 7021450 7021506 1.950000e-08 71.3
4 TraesCS3B01G414000 chr3A 94.158 2054 96 8 911 2946 631613971 631616018 0.000000e+00 3107.0
5 TraesCS3B01G414000 chr3A 91.667 876 43 16 25 872 631613099 631613972 0.000000e+00 1186.0
6 TraesCS3B01G414000 chr3A 94.426 305 14 3 3190 3494 460588537 460588236 2.130000e-127 466.0
7 TraesCS3B01G414000 chr3A 85.075 268 24 11 2937 3191 631616068 631616332 3.870000e-65 259.0
8 TraesCS3B01G414000 chr5A 99.662 296 1 0 3192 3487 158201183 158200888 3.430000e-150 542.0
9 TraesCS3B01G414000 chr5A 86.989 269 27 5 3599 3860 59511260 59511527 2.950000e-76 296.0
10 TraesCS3B01G414000 chr5A 92.000 50 4 0 3855 3904 546578048 546577999 1.950000e-08 71.3
11 TraesCS3B01G414000 chr5A 100.000 31 0 0 3571 3601 65178453 65178423 1.520000e-04 58.4
12 TraesCS3B01G414000 chr2D 91.379 348 19 8 352 689 632562664 632563010 2.130000e-127 466.0
13 TraesCS3B01G414000 chr2D 86.989 269 27 5 3602 3863 421012020 421011753 2.950000e-76 296.0
14 TraesCS3B01G414000 chr2D 97.143 35 1 0 3568 3602 190024135 190024101 4.210000e-05 60.2
15 TraesCS3B01G414000 chr7A 93.399 303 20 0 3190 3492 645255947 645255645 2.140000e-122 449.0
16 TraesCS3B01G414000 chr7A 93.581 296 18 1 3192 3487 477309826 477310120 1.290000e-119 440.0
17 TraesCS3B01G414000 chr7A 90.991 222 19 1 3599 3819 110675091 110674870 8.200000e-77 298.0
18 TraesCS3B01G414000 chr6D 93.266 297 19 1 3192 3487 308585921 308586217 1.670000e-118 436.0
19 TraesCS3B01G414000 chr6D 100.000 35 0 0 3568 3602 462634160 462634126 9.060000e-07 65.8
20 TraesCS3B01G414000 chr4A 93.243 296 19 1 3192 3487 518118117 518118411 5.990000e-118 435.0
21 TraesCS3B01G414000 chr4A 73.725 765 156 35 1985 2728 2952550 2951810 1.390000e-64 257.0
22 TraesCS3B01G414000 chr4A 87.179 156 15 5 481 636 656046069 656045919 5.190000e-39 172.0
23 TraesCS3B01G414000 chr1A 92.691 301 21 1 3190 3489 28616260 28615960 2.160000e-117 433.0
24 TraesCS3B01G414000 chr1A 92.691 301 21 1 3189 3489 510700400 510700699 2.160000e-117 433.0
25 TraesCS3B01G414000 chr2A 92.359 301 23 0 3189 3489 146749327 146749627 2.790000e-116 429.0
26 TraesCS3B01G414000 chr2A 89.313 262 21 3 3602 3856 2338903 2339164 4.870000e-84 322.0
27 TraesCS3B01G414000 chr7B 87.293 362 21 8 352 689 648223003 648223363 1.320000e-104 390.0
28 TraesCS3B01G414000 chr7B 85.294 136 9 5 564 689 684173136 684173002 3.170000e-26 130.0
29 TraesCS3B01G414000 chr7B 85.294 136 9 5 564 689 704165707 704165573 3.170000e-26 130.0
30 TraesCS3B01G414000 chrUn 92.308 221 16 1 3600 3819 362111378 362111598 2.930000e-81 313.0
31 TraesCS3B01G414000 chr1D 91.441 222 18 1 3599 3819 64214104 64213883 1.760000e-78 303.0
32 TraesCS3B01G414000 chr1D 97.619 42 1 0 3817 3858 369035288 369035329 5.410000e-09 73.1
33 TraesCS3B01G414000 chr4B 87.645 259 27 3 3602 3856 508228446 508228703 2.950000e-76 296.0
34 TraesCS3B01G414000 chr4B 73.671 771 158 35 1979 2728 587903208 587903954 1.390000e-64 257.0
35 TraesCS3B01G414000 chr4B 86.029 136 8 8 564 689 631973385 631973519 6.810000e-28 135.0
36 TraesCS3B01G414000 chr5D 87.218 266 24 6 3600 3858 512749704 512749442 1.060000e-75 294.0
37 TraesCS3B01G414000 chr5D 90.741 54 3 2 3855 3906 344567395 344567342 1.950000e-08 71.3
38 TraesCS3B01G414000 chr5D 88.889 54 4 2 3855 3906 535728186 535728133 9.060000e-07 65.8
39 TraesCS3B01G414000 chr1B 86.667 270 28 6 3592 3857 674619009 674619274 3.820000e-75 292.0
40 TraesCS3B01G414000 chr1B 86.765 136 7 5 564 689 554153635 554153501 1.460000e-29 141.0
41 TraesCS3B01G414000 chr1B 86.765 136 7 5 564 689 670625206 670625340 1.460000e-29 141.0
42 TraesCS3B01G414000 chr4D 75.651 538 110 17 1979 2510 468593002 468593524 8.380000e-62 248.0
43 TraesCS3B01G414000 chr4D 100.000 35 0 0 3568 3602 467118663 467118697 9.060000e-07 65.8
44 TraesCS3B01G414000 chr5B 87.500 136 6 5 564 689 521347057 521346923 3.140000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G414000 chr3B 650829643 650833548 3905 False 7214.000000 7214 100.000 1 3906 1 chr3B.!!$F1 3905
1 TraesCS3B01G414000 chr3D 488054384 488057621 3237 False 2401.500000 4590 89.312 25 3191 2 chr3D.!!$F2 3166
2 TraesCS3B01G414000 chr3A 631613099 631616332 3233 False 1517.333333 3107 90.300 25 3191 3 chr3A.!!$F1 3166
3 TraesCS3B01G414000 chr4A 2951810 2952550 740 True 257.000000 257 73.725 1985 2728 1 chr4A.!!$R1 743
4 TraesCS3B01G414000 chr4B 587903208 587903954 746 False 257.000000 257 73.671 1979 2728 1 chr4B.!!$F2 749
5 TraesCS3B01G414000 chr4D 468593002 468593524 522 False 248.000000 248 75.651 1979 2510 1 chr4D.!!$F2 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 282 0.251297 CCCATCTGCACCAAACCTGA 60.251 55.0 0.0 0.0 0.0 3.86 F
1353 1406 0.029567 CGTCATCGTCCAGCTCCTAC 59.970 60.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1807 1863 1.229529 GAGGTTGGGGAGTGGGAGA 60.230 63.158 0.0 0.0 0.00 3.71 R
2967 3135 0.101759 CGGCTAGGAAAATCGACCGA 59.898 55.000 0.0 0.0 41.61 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.429236 CTATAGCGCGGCTGTCGG 60.429 66.667 8.83 0.00 40.10 4.79
18 19 2.903350 TATAGCGCGGCTGTCGGA 60.903 61.111 8.83 0.00 40.10 4.55
19 20 2.788172 CTATAGCGCGGCTGTCGGAG 62.788 65.000 8.83 0.00 40.10 4.63
35 36 6.309251 GCTGTCGGAGATGCTCTTATATTAAC 59.691 42.308 0.00 0.00 40.67 2.01
39 40 9.909644 GTCGGAGATGCTCTTATATTAACTTAA 57.090 33.333 0.00 0.00 40.67 1.85
71 72 4.331968 AGTTGGCGAATTGAAGTTGGATA 58.668 39.130 0.00 0.00 0.00 2.59
127 129 2.475864 TCCACGTCAAATAAACCGAACG 59.524 45.455 0.00 0.00 0.00 3.95
132 134 4.325472 ACGTCAAATAAACCGAACGATCTC 59.675 41.667 0.00 0.00 0.00 2.75
156 158 3.807622 CACGGTGCGATAATCAATTAGGT 59.192 43.478 0.00 0.00 0.00 3.08
167 169 8.278408 CGATAATCAATTAGGTGTCACAATCAG 58.722 37.037 5.12 0.00 0.00 2.90
177 179 5.649395 AGGTGTCACAATCAGACAAATATGG 59.351 40.000 5.12 0.00 46.50 2.74
216 218 0.387565 GCTAGCTAGACAGGTGAGGC 59.612 60.000 25.15 1.53 33.61 4.70
231 238 1.621317 TGAGGCGAGGTGAACAATACA 59.379 47.619 0.00 0.00 0.00 2.29
275 282 0.251297 CCCATCTGCACCAAACCTGA 60.251 55.000 0.00 0.00 0.00 3.86
279 286 2.727123 TCTGCACCAAACCTGAAAGA 57.273 45.000 0.00 0.00 34.07 2.52
333 341 3.542046 GGAGCAAGACCTCCTCAAC 57.458 57.895 1.07 0.00 46.39 3.18
338 346 2.367567 AGCAAGACCTCCTCAACGTTAA 59.632 45.455 0.00 0.00 0.00 2.01
377 391 7.976826 ACTAGATAGATATACAAGTACGCAGC 58.023 38.462 0.00 0.00 0.00 5.25
449 463 2.203538 ACAACCAGCTGGCCTTGG 60.204 61.111 33.06 18.79 39.32 3.61
470 484 4.222366 TGGCCAAGCAAATCAAATCATGTA 59.778 37.500 0.61 0.00 0.00 2.29
475 489 7.545265 GCCAAGCAAATCAAATCATGTACTTAA 59.455 33.333 0.00 0.00 0.00 1.85
550 573 4.710680 CAAACCACAAAGCACAGTTTTTG 58.289 39.130 5.96 5.96 39.55 2.44
576 599 4.836404 CCGGGGAGGAACTTGGAAAGAC 62.836 59.091 0.00 0.00 45.83 3.01
588 611 4.610605 TTGGAAAGACCGATGTTAGTCA 57.389 40.909 0.00 0.00 42.61 3.41
803 829 0.384309 TGTACGTGGAGGCATCGATC 59.616 55.000 0.00 0.00 0.00 3.69
1032 1082 1.953311 GCTCTCTTGTCTCCGGAGTCT 60.953 57.143 30.17 0.00 0.00 3.24
1037 1087 1.176619 TTGTCTCCGGAGTCTCGCAA 61.177 55.000 30.17 22.21 0.00 4.85
1103 1153 3.737850 GATCGAGGAGAAAAGATGGCAT 58.262 45.455 0.00 0.00 0.00 4.40
1154 1204 2.224042 GGACTCACGATCATGGTGCATA 60.224 50.000 0.00 0.00 35.39 3.14
1192 1242 0.812811 GCAGAGAAGATCATGGCGCA 60.813 55.000 10.83 0.00 0.00 6.09
1208 1258 2.125552 CAGATGCGCGGAAGACCA 60.126 61.111 3.18 0.00 35.59 4.02
1270 1323 2.357517 CTGGTGCTGACCGTGGTC 60.358 66.667 12.17 12.17 46.62 4.02
1290 1343 1.372872 TGTCCGTCGTGCTCATGTG 60.373 57.895 0.00 0.00 0.00 3.21
1315 1368 2.559931 CCTCCTCAAGACCAGAACCCTA 60.560 54.545 0.00 0.00 0.00 3.53
1352 1405 1.101635 CCGTCATCGTCCAGCTCCTA 61.102 60.000 0.00 0.00 35.01 2.94
1353 1406 0.029567 CGTCATCGTCCAGCTCCTAC 59.970 60.000 0.00 0.00 0.00 3.18
1465 1518 1.963338 GGCGCTGCTCAACTTCAGT 60.963 57.895 7.64 0.00 33.09 3.41
1519 1575 2.258591 CTCCACACGACAGTCCGG 59.741 66.667 0.00 0.00 0.00 5.14
1520 1576 2.203379 TCCACACGACAGTCCGGA 60.203 61.111 0.00 0.00 0.00 5.14
1653 1709 2.419198 CGAGGATCAAGGAGGCCG 59.581 66.667 0.00 0.00 33.17 6.13
1807 1863 0.035036 TCCTCGTCGTCTCTGACTGT 59.965 55.000 0.00 0.00 36.71 3.55
1857 1913 0.105964 CACCTCTTCCACCAACACGA 59.894 55.000 0.00 0.00 0.00 4.35
1885 1941 2.716017 GCTCTACAGGGCTCACGCT 61.716 63.158 0.00 0.00 40.24 5.07
1918 1974 2.436646 CGCACTCGCCTTCCCATT 60.437 61.111 0.00 0.00 33.11 3.16
2026 2082 4.406173 CTGCACTCGTCGGACGCT 62.406 66.667 24.76 9.95 42.21 5.07
2242 2337 1.520342 CTACAGCAAGCTCCGCCTC 60.520 63.158 4.54 0.00 0.00 4.70
2555 2661 1.378911 CAACAGGGCCATGCTGCTA 60.379 57.895 19.26 0.00 0.00 3.49
2605 2715 2.187946 GAGCCGTACCTGCTGCAT 59.812 61.111 1.31 0.00 39.69 3.96
2660 2770 1.687123 ACTACGACTGCAACTGGAACT 59.313 47.619 0.00 0.00 0.00 3.01
2731 2841 1.669760 GGTGCACGACCGGATCAAA 60.670 57.895 9.46 0.00 34.02 2.69
2779 2889 0.241213 CGTTGCCGAAGAGTCAGAGA 59.759 55.000 0.00 0.00 35.63 3.10
2797 2907 1.552348 GATCGGCGCTGCAGTATGAC 61.552 60.000 16.64 7.06 39.69 3.06
2948 3059 7.722795 ACCTATGGTGTTTTTGTAAATTTGC 57.277 32.000 0.00 0.00 32.98 3.68
2967 3135 8.871686 AATTTGCTTTTAGAAAAATCTGACGT 57.128 26.923 0.00 0.00 0.00 4.34
2970 3138 5.080068 GCTTTTAGAAAAATCTGACGTCGG 58.920 41.667 18.66 18.66 0.00 4.79
3011 3179 0.460722 TTGCAATCATCCAATGGCCG 59.539 50.000 0.00 0.00 0.00 6.13
3015 3183 1.168407 AATCATCCAATGGCCGAGCG 61.168 55.000 0.00 0.00 0.00 5.03
3016 3184 2.329539 ATCATCCAATGGCCGAGCGT 62.330 55.000 0.00 0.00 0.00 5.07
3018 3186 2.735772 ATCCAATGGCCGAGCGTCT 61.736 57.895 0.00 0.00 0.00 4.18
3019 3187 2.650813 ATCCAATGGCCGAGCGTCTC 62.651 60.000 0.00 0.00 0.00 3.36
3049 3217 2.026729 CCCAACCCCTCTCTTCTTCTTC 60.027 54.545 0.00 0.00 0.00 2.87
3050 3218 2.026729 CCAACCCCTCTCTTCTTCTTCC 60.027 54.545 0.00 0.00 0.00 3.46
3070 3250 3.378399 GAGCACCCTCCTCTTCCGC 62.378 68.421 0.00 0.00 31.68 5.54
3071 3251 4.475135 GCACCCTCCTCTTCCGCC 62.475 72.222 0.00 0.00 0.00 6.13
3127 3307 2.508751 GGTCCTATCCCGGTCTGGC 61.509 68.421 0.00 0.00 35.87 4.85
3153 3333 1.819632 CCGTGGCCAGCCTATTGTC 60.820 63.158 5.11 0.00 36.94 3.18
3178 3358 3.385384 CACCCTCAGAGCTCCGCA 61.385 66.667 10.93 0.00 0.00 5.69
3181 3361 2.729479 CCCTCAGAGCTCCGCATGT 61.729 63.158 10.93 0.00 0.00 3.21
3191 3371 1.136305 GCTCCGCATGTACCTCACTTA 59.864 52.381 0.00 0.00 0.00 2.24
3192 3372 2.799917 GCTCCGCATGTACCTCACTTAG 60.800 54.545 0.00 0.00 0.00 2.18
3202 3382 2.409948 CCTCACTTAGGCCTCCTTTG 57.590 55.000 9.68 2.39 38.97 2.77
3203 3383 1.065126 CCTCACTTAGGCCTCCTTTGG 60.065 57.143 9.68 1.88 38.97 3.28
3204 3384 1.630878 CTCACTTAGGCCTCCTTTGGT 59.369 52.381 9.68 0.00 34.61 3.67
3205 3385 2.040412 CTCACTTAGGCCTCCTTTGGTT 59.960 50.000 9.68 0.00 34.61 3.67
3206 3386 2.039879 TCACTTAGGCCTCCTTTGGTTC 59.960 50.000 9.68 0.00 34.61 3.62
3207 3387 2.062636 ACTTAGGCCTCCTTTGGTTCA 58.937 47.619 9.68 0.00 34.61 3.18
3208 3388 2.649816 ACTTAGGCCTCCTTTGGTTCAT 59.350 45.455 9.68 0.00 34.61 2.57
3209 3389 3.850173 ACTTAGGCCTCCTTTGGTTCATA 59.150 43.478 9.68 0.00 34.61 2.15
3210 3390 4.291249 ACTTAGGCCTCCTTTGGTTCATAA 59.709 41.667 9.68 0.00 34.61 1.90
3211 3391 3.372440 AGGCCTCCTTTGGTTCATAAG 57.628 47.619 0.00 0.00 0.00 1.73
3212 3392 2.919602 AGGCCTCCTTTGGTTCATAAGA 59.080 45.455 0.00 0.00 0.00 2.10
3213 3393 3.529319 AGGCCTCCTTTGGTTCATAAGAT 59.471 43.478 0.00 0.00 0.00 2.40
3214 3394 4.726825 AGGCCTCCTTTGGTTCATAAGATA 59.273 41.667 0.00 0.00 0.00 1.98
3215 3395 5.066593 GGCCTCCTTTGGTTCATAAGATAG 58.933 45.833 0.00 0.00 0.00 2.08
3216 3396 5.163195 GGCCTCCTTTGGTTCATAAGATAGA 60.163 44.000 0.00 0.00 0.00 1.98
3217 3397 6.357367 GCCTCCTTTGGTTCATAAGATAGAA 58.643 40.000 0.00 0.00 0.00 2.10
3218 3398 6.828785 GCCTCCTTTGGTTCATAAGATAGAAA 59.171 38.462 0.00 0.00 0.00 2.52
3219 3399 7.503902 GCCTCCTTTGGTTCATAAGATAGAAAT 59.496 37.037 0.00 0.00 0.00 2.17
3220 3400 8.844244 CCTCCTTTGGTTCATAAGATAGAAATG 58.156 37.037 0.00 0.00 0.00 2.32
3221 3401 9.401058 CTCCTTTGGTTCATAAGATAGAAATGT 57.599 33.333 0.00 0.00 0.00 2.71
3222 3402 9.753674 TCCTTTGGTTCATAAGATAGAAATGTT 57.246 29.630 0.00 0.00 0.00 2.71
3257 3437 9.715121 AGTAAAATTATAGGAAGTGAAACGACA 57.285 29.630 0.00 0.00 45.86 4.35
3260 3440 6.604735 ATTATAGGAAGTGAAACGACATGC 57.395 37.500 0.00 0.00 45.86 4.06
3261 3441 2.254546 AGGAAGTGAAACGACATGCA 57.745 45.000 0.00 0.00 45.86 3.96
3262 3442 2.783135 AGGAAGTGAAACGACATGCAT 58.217 42.857 0.00 0.00 45.86 3.96
3263 3443 2.744202 AGGAAGTGAAACGACATGCATC 59.256 45.455 0.00 0.00 45.86 3.91
3264 3444 2.744202 GGAAGTGAAACGACATGCATCT 59.256 45.455 0.00 0.00 45.86 2.90
3265 3445 3.181516 GGAAGTGAAACGACATGCATCTC 60.182 47.826 0.00 0.00 45.86 2.75
3266 3446 3.044235 AGTGAAACGACATGCATCTCA 57.956 42.857 0.00 0.00 45.86 3.27
3267 3447 3.402110 AGTGAAACGACATGCATCTCAA 58.598 40.909 0.00 0.00 45.86 3.02
3268 3448 4.005650 AGTGAAACGACATGCATCTCAAT 58.994 39.130 0.00 0.00 45.86 2.57
3269 3449 4.456911 AGTGAAACGACATGCATCTCAATT 59.543 37.500 0.00 0.00 45.86 2.32
3270 3450 4.790140 GTGAAACGACATGCATCTCAATTC 59.210 41.667 0.00 3.16 0.00 2.17
3271 3451 4.142622 TGAAACGACATGCATCTCAATTCC 60.143 41.667 0.00 0.00 0.00 3.01
3272 3452 3.272574 ACGACATGCATCTCAATTCCT 57.727 42.857 0.00 0.00 0.00 3.36
3273 3453 4.406648 ACGACATGCATCTCAATTCCTA 57.593 40.909 0.00 0.00 0.00 2.94
3274 3454 4.965814 ACGACATGCATCTCAATTCCTAT 58.034 39.130 0.00 0.00 0.00 2.57
3275 3455 6.101650 ACGACATGCATCTCAATTCCTATA 57.898 37.500 0.00 0.00 0.00 1.31
3276 3456 6.162079 ACGACATGCATCTCAATTCCTATAG 58.838 40.000 0.00 0.00 0.00 1.31
3277 3457 6.015095 ACGACATGCATCTCAATTCCTATAGA 60.015 38.462 0.00 0.00 0.00 1.98
3278 3458 6.530887 CGACATGCATCTCAATTCCTATAGAG 59.469 42.308 0.00 0.00 0.00 2.43
3279 3459 7.550597 ACATGCATCTCAATTCCTATAGAGA 57.449 36.000 0.00 0.00 40.96 3.10
3280 3460 7.971201 ACATGCATCTCAATTCCTATAGAGAA 58.029 34.615 0.00 3.84 40.19 2.87
3281 3461 8.435187 ACATGCATCTCAATTCCTATAGAGAAA 58.565 33.333 0.00 0.00 40.19 2.52
3282 3462 8.937884 CATGCATCTCAATTCCTATAGAGAAAG 58.062 37.037 0.00 1.90 40.19 2.62
3283 3463 8.255111 TGCATCTCAATTCCTATAGAGAAAGA 57.745 34.615 0.00 4.31 40.19 2.52
3284 3464 8.366401 TGCATCTCAATTCCTATAGAGAAAGAG 58.634 37.037 18.33 18.33 40.19 2.85
3285 3465 8.584157 GCATCTCAATTCCTATAGAGAAAGAGA 58.416 37.037 23.11 23.11 40.19 3.10
3288 3468 9.653516 TCTCAATTCCTATAGAGAAAGAGATGT 57.346 33.333 20.46 2.79 35.41 3.06
3289 3469 9.912634 CTCAATTCCTATAGAGAAAGAGATGTC 57.087 37.037 18.93 0.00 34.18 3.06
3290 3470 9.426534 TCAATTCCTATAGAGAAAGAGATGTCA 57.573 33.333 0.00 0.00 0.00 3.58
3295 3475 9.426534 TCCTATAGAGAAAGAGATGTCATTTGA 57.573 33.333 0.00 0.00 0.00 2.69
3298 3478 6.680874 AGAGAAAGAGATGTCATTTGATGC 57.319 37.500 0.00 0.00 0.00 3.91
3299 3479 6.178324 AGAGAAAGAGATGTCATTTGATGCA 58.822 36.000 0.00 0.00 0.00 3.96
3300 3480 6.829298 AGAGAAAGAGATGTCATTTGATGCAT 59.171 34.615 0.00 0.00 32.43 3.96
3301 3481 7.991460 AGAGAAAGAGATGTCATTTGATGCATA 59.009 33.333 0.00 0.00 30.80 3.14
3302 3482 8.693120 AGAAAGAGATGTCATTTGATGCATAT 57.307 30.769 0.00 0.00 30.80 1.78
3303 3483 8.568794 AGAAAGAGATGTCATTTGATGCATATG 58.431 33.333 0.00 0.00 30.80 1.78
3304 3484 8.459911 AAAGAGATGTCATTTGATGCATATGA 57.540 30.769 6.97 2.41 31.48 2.15
3305 3485 8.637196 AAGAGATGTCATTTGATGCATATGAT 57.363 30.769 12.57 0.00 35.18 2.45
3306 3486 9.734984 AAGAGATGTCATTTGATGCATATGATA 57.265 29.630 12.57 10.78 35.18 2.15
3307 3487 9.384764 AGAGATGTCATTTGATGCATATGATAG 57.615 33.333 12.57 0.00 35.18 2.08
3308 3488 8.507524 AGATGTCATTTGATGCATATGATAGG 57.492 34.615 12.57 0.00 35.18 2.57
3309 3489 8.326529 AGATGTCATTTGATGCATATGATAGGA 58.673 33.333 12.57 0.00 35.18 2.94
3310 3490 8.873186 ATGTCATTTGATGCATATGATAGGAA 57.127 30.769 12.57 0.00 35.18 3.36
3311 3491 8.873186 TGTCATTTGATGCATATGATAGGAAT 57.127 30.769 12.57 0.00 35.18 3.01
3312 3492 9.304335 TGTCATTTGATGCATATGATAGGAATT 57.696 29.630 12.57 0.00 35.18 2.17
3336 3516 8.635765 TTTTTCCATTGAGTCTTAGCTAATGT 57.364 30.769 6.64 0.00 0.00 2.71
3337 3517 8.635765 TTTTCCATTGAGTCTTAGCTAATGTT 57.364 30.769 6.64 0.00 0.00 2.71
3338 3518 7.849804 TTCCATTGAGTCTTAGCTAATGTTC 57.150 36.000 6.64 5.60 0.00 3.18
3339 3519 7.187824 TCCATTGAGTCTTAGCTAATGTTCT 57.812 36.000 6.64 3.42 0.00 3.01
3340 3520 7.624549 TCCATTGAGTCTTAGCTAATGTTCTT 58.375 34.615 6.64 0.00 0.00 2.52
3341 3521 8.103305 TCCATTGAGTCTTAGCTAATGTTCTTT 58.897 33.333 6.64 0.00 0.00 2.52
3342 3522 8.734386 CCATTGAGTCTTAGCTAATGTTCTTTT 58.266 33.333 6.64 0.00 0.00 2.27
3343 3523 9.766277 CATTGAGTCTTAGCTAATGTTCTTTTC 57.234 33.333 6.64 0.00 0.00 2.29
3344 3524 7.907214 TGAGTCTTAGCTAATGTTCTTTTCC 57.093 36.000 6.64 0.00 0.00 3.13
3345 3525 7.680730 TGAGTCTTAGCTAATGTTCTTTTCCT 58.319 34.615 6.64 0.00 0.00 3.36
3346 3526 7.819900 TGAGTCTTAGCTAATGTTCTTTTCCTC 59.180 37.037 6.64 2.01 0.00 3.71
3347 3527 7.912719 AGTCTTAGCTAATGTTCTTTTCCTCT 58.087 34.615 6.64 0.00 0.00 3.69
3348 3528 9.036980 AGTCTTAGCTAATGTTCTTTTCCTCTA 57.963 33.333 6.64 0.00 0.00 2.43
3349 3529 9.654663 GTCTTAGCTAATGTTCTTTTCCTCTAA 57.345 33.333 6.64 0.00 0.00 2.10
3368 3548 9.799106 TCCTCTAAAATATGAAGGATTGATTCC 57.201 33.333 0.00 0.00 45.85 3.01
3397 3577 8.386012 CCTACATAGGAATAGGAATCCATTCT 57.614 38.462 17.55 5.49 46.63 2.40
3398 3578 8.830741 CCTACATAGGAATAGGAATCCATTCTT 58.169 37.037 17.55 14.55 46.63 2.52
3401 3581 9.170890 ACATAGGAATAGGAATCCATTCTTACA 57.829 33.333 17.55 4.23 39.55 2.41
3404 3584 8.753497 AGGAATAGGAATCCATTCTTACAAAC 57.247 34.615 17.55 5.90 39.55 2.93
3405 3585 7.780271 AGGAATAGGAATCCATTCTTACAAACC 59.220 37.037 17.55 5.86 39.55 3.27
3406 3586 7.559897 GGAATAGGAATCCATTCTTACAAACCA 59.440 37.037 17.55 0.00 36.92 3.67
3407 3587 8.893563 AATAGGAATCCATTCTTACAAACCAA 57.106 30.769 0.61 0.00 37.00 3.67
3408 3588 8.893563 ATAGGAATCCATTCTTACAAACCAAA 57.106 30.769 0.61 0.00 37.00 3.28
3409 3589 7.232118 AGGAATCCATTCTTACAAACCAAAG 57.768 36.000 0.61 0.00 37.00 2.77
3410 3590 6.211384 AGGAATCCATTCTTACAAACCAAAGG 59.789 38.462 0.61 0.00 37.00 3.11
3411 3591 6.358974 AATCCATTCTTACAAACCAAAGGG 57.641 37.500 0.00 0.00 41.29 3.95
3412 3592 3.576550 TCCATTCTTACAAACCAAAGGGC 59.423 43.478 0.00 0.00 37.90 5.19
3413 3593 3.578282 CCATTCTTACAAACCAAAGGGCT 59.422 43.478 0.00 0.00 37.90 5.19
3414 3594 4.040339 CCATTCTTACAAACCAAAGGGCTT 59.960 41.667 0.00 0.00 37.90 4.35
3415 3595 4.929819 TTCTTACAAACCAAAGGGCTTC 57.070 40.909 0.00 0.00 37.90 3.86
3416 3596 3.904717 TCTTACAAACCAAAGGGCTTCA 58.095 40.909 0.00 0.00 37.90 3.02
3417 3597 4.282496 TCTTACAAACCAAAGGGCTTCAA 58.718 39.130 0.00 0.00 37.90 2.69
3418 3598 4.712337 TCTTACAAACCAAAGGGCTTCAAA 59.288 37.500 0.00 0.00 37.90 2.69
3419 3599 3.541996 ACAAACCAAAGGGCTTCAAAG 57.458 42.857 0.00 0.00 37.90 2.77
3420 3600 2.170397 ACAAACCAAAGGGCTTCAAAGG 59.830 45.455 0.00 0.00 37.90 3.11
3421 3601 2.433970 CAAACCAAAGGGCTTCAAAGGA 59.566 45.455 0.00 0.00 37.90 3.36
3422 3602 2.470057 ACCAAAGGGCTTCAAAGGAA 57.530 45.000 0.00 0.00 37.90 3.36
3423 3603 2.758130 ACCAAAGGGCTTCAAAGGAAA 58.242 42.857 0.00 0.00 37.90 3.13
3424 3604 3.317406 ACCAAAGGGCTTCAAAGGAAAT 58.683 40.909 0.00 0.00 37.90 2.17
3425 3605 3.716353 ACCAAAGGGCTTCAAAGGAAATT 59.284 39.130 0.00 0.00 37.90 1.82
3426 3606 4.165950 ACCAAAGGGCTTCAAAGGAAATTT 59.834 37.500 0.00 0.00 37.90 1.82
3427 3607 5.132502 CCAAAGGGCTTCAAAGGAAATTTT 58.867 37.500 0.00 0.00 31.35 1.82
3428 3608 5.239306 CCAAAGGGCTTCAAAGGAAATTTTC 59.761 40.000 0.24 0.24 31.35 2.29
3429 3609 9.962289 ACCAAAGGGCTTCAAAGGAAATTTTCC 62.962 40.741 18.71 18.71 44.02 3.13
3475 3655 9.803315 GAAAATCCTATGAAATTCCTACAAACC 57.197 33.333 0.00 0.00 0.00 3.27
3476 3656 8.893563 AAATCCTATGAAATTCCTACAAACCA 57.106 30.769 0.00 0.00 0.00 3.67
3477 3657 8.893563 AATCCTATGAAATTCCTACAAACCAA 57.106 30.769 0.00 0.00 0.00 3.67
3478 3658 8.893563 ATCCTATGAAATTCCTACAAACCAAA 57.106 30.769 0.00 0.00 0.00 3.28
3479 3659 8.348285 TCCTATGAAATTCCTACAAACCAAAG 57.652 34.615 0.00 0.00 0.00 2.77
3480 3660 7.396055 TCCTATGAAATTCCTACAAACCAAAGG 59.604 37.037 0.00 0.00 0.00 3.11
3481 3661 7.396055 CCTATGAAATTCCTACAAACCAAAGGA 59.604 37.037 0.00 0.00 37.64 3.36
3482 3662 6.648879 TGAAATTCCTACAAACCAAAGGAG 57.351 37.500 0.00 0.00 40.43 3.69
3483 3663 5.010617 TGAAATTCCTACAAACCAAAGGAGC 59.989 40.000 0.00 0.00 40.43 4.70
3484 3664 2.579410 TCCTACAAACCAAAGGAGCC 57.421 50.000 0.00 0.00 34.46 4.70
3485 3665 1.074889 TCCTACAAACCAAAGGAGCCC 59.925 52.381 0.00 0.00 34.46 5.19
3486 3666 1.075536 CCTACAAACCAAAGGAGCCCT 59.924 52.381 0.00 0.00 33.87 5.19
3488 3668 3.245122 CCTACAAACCAAAGGAGCCCTTA 60.245 47.826 6.88 0.00 43.92 2.69
3489 3669 3.542969 ACAAACCAAAGGAGCCCTTAT 57.457 42.857 6.88 0.00 43.92 1.73
3490 3670 3.856900 ACAAACCAAAGGAGCCCTTATT 58.143 40.909 6.88 1.13 43.92 1.40
3491 3671 3.832490 ACAAACCAAAGGAGCCCTTATTC 59.168 43.478 6.88 0.00 43.92 1.75
3492 3672 4.089361 CAAACCAAAGGAGCCCTTATTCT 58.911 43.478 6.88 0.00 43.92 2.40
3493 3673 4.404185 AACCAAAGGAGCCCTTATTCTT 57.596 40.909 6.88 0.00 43.92 2.52
3494 3674 3.969553 ACCAAAGGAGCCCTTATTCTTC 58.030 45.455 6.88 0.00 43.92 2.87
3495 3675 3.291584 CCAAAGGAGCCCTTATTCTTCC 58.708 50.000 6.88 0.00 43.92 3.46
3496 3676 3.309121 CCAAAGGAGCCCTTATTCTTCCA 60.309 47.826 6.88 0.00 43.92 3.53
3497 3677 3.941704 AAGGAGCCCTTATTCTTCCAG 57.058 47.619 4.81 0.00 42.74 3.86
3498 3678 3.136641 AGGAGCCCTTATTCTTCCAGA 57.863 47.619 0.00 0.00 0.00 3.86
3499 3679 3.464828 AGGAGCCCTTATTCTTCCAGAA 58.535 45.455 0.00 0.00 38.78 3.02
3500 3680 3.852578 AGGAGCCCTTATTCTTCCAGAAA 59.147 43.478 0.00 0.00 37.82 2.52
3501 3681 4.292306 AGGAGCCCTTATTCTTCCAGAAAA 59.708 41.667 0.00 0.00 37.82 2.29
3502 3682 4.399618 GGAGCCCTTATTCTTCCAGAAAAC 59.600 45.833 0.00 0.00 37.82 2.43
3503 3683 4.344978 AGCCCTTATTCTTCCAGAAAACC 58.655 43.478 0.00 0.00 37.82 3.27
3504 3684 3.128764 GCCCTTATTCTTCCAGAAAACCG 59.871 47.826 0.00 0.00 37.82 4.44
3505 3685 4.585879 CCCTTATTCTTCCAGAAAACCGA 58.414 43.478 0.00 0.00 37.82 4.69
3506 3686 4.395231 CCCTTATTCTTCCAGAAAACCGAC 59.605 45.833 0.00 0.00 37.82 4.79
3507 3687 5.246307 CCTTATTCTTCCAGAAAACCGACT 58.754 41.667 0.00 0.00 37.82 4.18
3508 3688 6.403878 CCTTATTCTTCCAGAAAACCGACTA 58.596 40.000 0.00 0.00 37.82 2.59
3509 3689 6.877322 CCTTATTCTTCCAGAAAACCGACTAA 59.123 38.462 0.00 0.00 37.82 2.24
3510 3690 7.553044 CCTTATTCTTCCAGAAAACCGACTAAT 59.447 37.037 0.00 0.00 37.82 1.73
3511 3691 6.743575 ATTCTTCCAGAAAACCGACTAATG 57.256 37.500 0.00 0.00 37.82 1.90
3512 3692 5.223449 TCTTCCAGAAAACCGACTAATGT 57.777 39.130 0.00 0.00 0.00 2.71
3513 3693 5.235516 TCTTCCAGAAAACCGACTAATGTC 58.764 41.667 0.00 0.00 39.70 3.06
3514 3694 4.610605 TCCAGAAAACCGACTAATGTCA 57.389 40.909 0.00 0.00 43.06 3.58
3515 3695 4.312443 TCCAGAAAACCGACTAATGTCAC 58.688 43.478 0.00 0.00 43.06 3.67
3516 3696 4.039973 TCCAGAAAACCGACTAATGTCACT 59.960 41.667 0.00 0.00 43.06 3.41
3517 3697 4.389077 CCAGAAAACCGACTAATGTCACTC 59.611 45.833 0.00 0.00 43.06 3.51
3518 3698 4.090066 CAGAAAACCGACTAATGTCACTCG 59.910 45.833 0.00 0.00 43.06 4.18
3519 3699 1.992170 AACCGACTAATGTCACTCGC 58.008 50.000 0.00 0.00 43.06 5.03
3520 3700 0.179171 ACCGACTAATGTCACTCGCG 60.179 55.000 0.00 0.00 43.06 5.87
3521 3701 0.179171 CCGACTAATGTCACTCGCGT 60.179 55.000 5.77 0.00 43.06 6.01
3522 3702 1.614385 CGACTAATGTCACTCGCGTT 58.386 50.000 5.77 0.00 43.06 4.84
3523 3703 1.983605 CGACTAATGTCACTCGCGTTT 59.016 47.619 5.77 0.00 43.06 3.60
3524 3704 2.407361 CGACTAATGTCACTCGCGTTTT 59.593 45.455 5.77 0.00 43.06 2.43
3525 3705 3.479866 CGACTAATGTCACTCGCGTTTTC 60.480 47.826 5.77 0.00 43.06 2.29
3526 3706 3.386486 ACTAATGTCACTCGCGTTTTCA 58.614 40.909 5.77 0.98 0.00 2.69
3527 3707 2.663279 AATGTCACTCGCGTTTTCAC 57.337 45.000 5.77 0.00 0.00 3.18
3528 3708 7.808484 GACTAATGTCACTCGCGTTTTCACG 62.808 48.000 5.77 0.00 44.66 4.35
3538 3718 2.631663 CGTTTTCACGCGACTTACAA 57.368 45.000 15.93 0.00 40.18 2.41
3539 3719 2.958908 CGTTTTCACGCGACTTACAAA 58.041 42.857 15.93 0.00 40.18 2.83
3540 3720 3.537806 CGTTTTCACGCGACTTACAAAT 58.462 40.909 15.93 0.00 40.18 2.32
3541 3721 4.690096 CGTTTTCACGCGACTTACAAATA 58.310 39.130 15.93 0.00 40.18 1.40
3542 3722 5.131890 CGTTTTCACGCGACTTACAAATAA 58.868 37.500 15.93 0.00 40.18 1.40
3543 3723 5.055973 CGTTTTCACGCGACTTACAAATAAC 59.944 40.000 15.93 2.19 40.18 1.89
3544 3724 3.957747 TCACGCGACTTACAAATAACG 57.042 42.857 15.93 0.00 0.00 3.18
3545 3725 3.563508 TCACGCGACTTACAAATAACGA 58.436 40.909 15.93 0.00 0.00 3.85
3546 3726 3.980134 TCACGCGACTTACAAATAACGAA 59.020 39.130 15.93 0.00 0.00 3.85
3547 3727 4.622313 TCACGCGACTTACAAATAACGAAT 59.378 37.500 15.93 0.00 0.00 3.34
3548 3728 5.799435 TCACGCGACTTACAAATAACGAATA 59.201 36.000 15.93 0.00 0.00 1.75
3549 3729 5.887288 CACGCGACTTACAAATAACGAATAC 59.113 40.000 15.93 0.00 0.00 1.89
3550 3730 5.004726 ACGCGACTTACAAATAACGAATACC 59.995 40.000 15.93 0.00 0.00 2.73
3551 3731 5.555069 CGCGACTTACAAATAACGAATACCC 60.555 44.000 0.00 0.00 0.00 3.69
3552 3732 5.291614 GCGACTTACAAATAACGAATACCCA 59.708 40.000 0.00 0.00 0.00 4.51
3553 3733 6.018507 GCGACTTACAAATAACGAATACCCAT 60.019 38.462 0.00 0.00 0.00 4.00
3554 3734 7.466320 GCGACTTACAAATAACGAATACCCATT 60.466 37.037 0.00 0.00 0.00 3.16
3555 3735 8.392612 CGACTTACAAATAACGAATACCCATTT 58.607 33.333 0.00 0.00 0.00 2.32
3567 3747 9.985730 AACGAATACCCATTTATAATTCTACGA 57.014 29.630 0.00 0.00 0.00 3.43
3568 3748 9.985730 ACGAATACCCATTTATAATTCTACGAA 57.014 29.630 0.00 0.00 0.00 3.85
3571 3751 9.734984 AATACCCATTTATAATTCTACGAAGGG 57.265 33.333 0.00 0.00 37.43 3.95
3572 3752 7.145474 ACCCATTTATAATTCTACGAAGGGT 57.855 36.000 0.00 0.00 39.68 4.34
3573 3753 6.996282 ACCCATTTATAATTCTACGAAGGGTG 59.004 38.462 0.00 0.00 42.66 4.61
3574 3754 6.996282 CCCATTTATAATTCTACGAAGGGTGT 59.004 38.462 0.00 0.00 0.00 4.16
3575 3755 7.041372 CCCATTTATAATTCTACGAAGGGTGTG 60.041 40.741 0.00 0.00 0.00 3.82
3576 3756 7.041372 CCATTTATAATTCTACGAAGGGTGTGG 60.041 40.741 0.00 0.00 0.00 4.17
3577 3757 2.109425 AATTCTACGAAGGGTGTGGC 57.891 50.000 0.00 0.00 0.00 5.01
3578 3758 1.276622 ATTCTACGAAGGGTGTGGCT 58.723 50.000 0.00 0.00 0.00 4.75
3579 3759 1.927487 TTCTACGAAGGGTGTGGCTA 58.073 50.000 0.00 0.00 0.00 3.93
3580 3760 1.471119 TCTACGAAGGGTGTGGCTAG 58.529 55.000 0.00 0.00 0.00 3.42
3581 3761 0.460311 CTACGAAGGGTGTGGCTAGG 59.540 60.000 0.00 0.00 0.00 3.02
3582 3762 0.251922 TACGAAGGGTGTGGCTAGGT 60.252 55.000 0.00 0.00 0.00 3.08
3583 3763 1.218316 CGAAGGGTGTGGCTAGGTC 59.782 63.158 0.00 0.00 0.00 3.85
3584 3764 1.258445 CGAAGGGTGTGGCTAGGTCT 61.258 60.000 0.00 0.00 0.00 3.85
3585 3765 1.861982 GAAGGGTGTGGCTAGGTCTA 58.138 55.000 0.00 0.00 0.00 2.59
3586 3766 2.185387 GAAGGGTGTGGCTAGGTCTAA 58.815 52.381 0.00 0.00 0.00 2.10
3587 3767 1.867363 AGGGTGTGGCTAGGTCTAAG 58.133 55.000 0.00 0.00 0.00 2.18
3588 3768 1.078989 AGGGTGTGGCTAGGTCTAAGT 59.921 52.381 0.00 0.00 0.00 2.24
3589 3769 1.481363 GGGTGTGGCTAGGTCTAAGTC 59.519 57.143 0.00 0.00 0.00 3.01
3590 3770 1.134560 GGTGTGGCTAGGTCTAAGTCG 59.865 57.143 0.00 0.00 0.00 4.18
3591 3771 2.089980 GTGTGGCTAGGTCTAAGTCGA 58.910 52.381 0.00 0.00 0.00 4.20
3592 3772 2.089980 TGTGGCTAGGTCTAAGTCGAC 58.910 52.381 7.70 7.70 0.00 4.20
3593 3773 2.290768 TGTGGCTAGGTCTAAGTCGACT 60.291 50.000 13.58 13.58 34.38 4.18
3594 3774 2.097791 GTGGCTAGGTCTAAGTCGACTG 59.902 54.545 20.85 7.79 34.38 3.51
3595 3775 2.026542 TGGCTAGGTCTAAGTCGACTGA 60.027 50.000 20.85 11.31 34.38 3.41
3596 3776 2.614983 GGCTAGGTCTAAGTCGACTGAG 59.385 54.545 22.32 22.32 34.38 3.35
3597 3777 3.533547 GCTAGGTCTAAGTCGACTGAGA 58.466 50.000 26.12 26.12 34.38 3.27
3606 3786 2.553079 GTCGACTGAGACTTAGGCTG 57.447 55.000 8.70 0.00 38.09 4.85
3607 3787 1.133407 GTCGACTGAGACTTAGGCTGG 59.867 57.143 8.70 0.00 38.09 4.85
3608 3788 1.178276 CGACTGAGACTTAGGCTGGT 58.822 55.000 0.00 0.00 0.00 4.00
3609 3789 1.133407 CGACTGAGACTTAGGCTGGTC 59.867 57.143 0.00 12.47 0.00 4.02
3610 3790 1.133407 GACTGAGACTTAGGCTGGTCG 59.867 57.143 0.00 5.87 37.52 4.79
3611 3791 1.178276 CTGAGACTTAGGCTGGTCGT 58.822 55.000 0.00 5.81 37.52 4.34
3612 3792 2.290768 ACTGAGACTTAGGCTGGTCGTA 60.291 50.000 0.00 8.30 37.52 3.43
3613 3793 2.753452 CTGAGACTTAGGCTGGTCGTAA 59.247 50.000 0.00 6.00 37.52 3.18
3614 3794 3.362706 TGAGACTTAGGCTGGTCGTAAT 58.637 45.455 0.00 1.00 37.52 1.89
3615 3795 3.130516 TGAGACTTAGGCTGGTCGTAATG 59.869 47.826 0.00 0.00 37.52 1.90
3616 3796 2.431057 AGACTTAGGCTGGTCGTAATGG 59.569 50.000 13.85 0.00 37.52 3.16
3617 3797 1.485066 ACTTAGGCTGGTCGTAATGGG 59.515 52.381 0.00 0.00 0.00 4.00
3618 3798 1.760613 CTTAGGCTGGTCGTAATGGGA 59.239 52.381 0.00 0.00 0.00 4.37
3619 3799 1.410004 TAGGCTGGTCGTAATGGGAG 58.590 55.000 0.00 0.00 0.00 4.30
3620 3800 0.617820 AGGCTGGTCGTAATGGGAGT 60.618 55.000 0.00 0.00 0.00 3.85
3621 3801 1.117150 GGCTGGTCGTAATGGGAGTA 58.883 55.000 0.00 0.00 0.00 2.59
3622 3802 1.692519 GGCTGGTCGTAATGGGAGTAT 59.307 52.381 0.00 0.00 0.00 2.12
3623 3803 2.288886 GGCTGGTCGTAATGGGAGTATC 60.289 54.545 0.00 0.00 0.00 2.24
3624 3804 2.364324 GCTGGTCGTAATGGGAGTATCA 59.636 50.000 0.00 0.00 36.25 2.15
3625 3805 3.006967 GCTGGTCGTAATGGGAGTATCAT 59.993 47.826 0.00 0.00 36.25 2.45
3626 3806 4.219944 GCTGGTCGTAATGGGAGTATCATA 59.780 45.833 0.00 0.00 36.25 2.15
3627 3807 5.279306 GCTGGTCGTAATGGGAGTATCATAA 60.279 44.000 0.00 0.00 36.25 1.90
3628 3808 6.734502 TGGTCGTAATGGGAGTATCATAAA 57.265 37.500 0.00 0.00 36.25 1.40
3629 3809 7.311092 TGGTCGTAATGGGAGTATCATAAAT 57.689 36.000 0.00 0.00 36.25 1.40
3630 3810 8.425237 TGGTCGTAATGGGAGTATCATAAATA 57.575 34.615 0.00 0.00 36.25 1.40
3631 3811 9.042450 TGGTCGTAATGGGAGTATCATAAATAT 57.958 33.333 0.00 0.00 36.25 1.28
3632 3812 9.886132 GGTCGTAATGGGAGTATCATAAATATT 57.114 33.333 0.00 0.00 36.25 1.28
3647 3827 9.811995 ATCATAAATATTATCATGCATGCCAAC 57.188 29.630 22.25 0.00 0.00 3.77
3648 3828 9.027202 TCATAAATATTATCATGCATGCCAACT 57.973 29.630 22.25 7.69 0.00 3.16
3651 3831 7.400599 AATATTATCATGCATGCCAACTAGG 57.599 36.000 22.25 0.00 41.84 3.02
3665 3845 5.002464 CCAACTAGGCAAATTTGATGAGG 57.998 43.478 22.31 9.20 0.00 3.86
3666 3846 4.463891 CCAACTAGGCAAATTTGATGAGGT 59.536 41.667 22.31 9.97 0.00 3.85
3667 3847 5.652014 CCAACTAGGCAAATTTGATGAGGTA 59.348 40.000 22.31 2.63 0.00 3.08
3668 3848 6.183360 CCAACTAGGCAAATTTGATGAGGTAG 60.183 42.308 22.31 12.83 0.00 3.18
3669 3849 4.884164 ACTAGGCAAATTTGATGAGGTAGC 59.116 41.667 22.31 2.63 0.00 3.58
3670 3850 3.700538 AGGCAAATTTGATGAGGTAGCA 58.299 40.909 22.31 0.00 0.00 3.49
3671 3851 4.284178 AGGCAAATTTGATGAGGTAGCAT 58.716 39.130 22.31 0.00 0.00 3.79
3672 3852 5.448654 AGGCAAATTTGATGAGGTAGCATA 58.551 37.500 22.31 0.00 0.00 3.14
3673 3853 5.533903 AGGCAAATTTGATGAGGTAGCATAG 59.466 40.000 22.31 0.00 0.00 2.23
3674 3854 5.532406 GGCAAATTTGATGAGGTAGCATAGA 59.468 40.000 22.31 0.00 0.00 1.98
3675 3855 6.039717 GGCAAATTTGATGAGGTAGCATAGAA 59.960 38.462 22.31 0.00 0.00 2.10
3676 3856 7.416664 GGCAAATTTGATGAGGTAGCATAGAAA 60.417 37.037 22.31 0.00 0.00 2.52
3677 3857 8.139989 GCAAATTTGATGAGGTAGCATAGAAAT 58.860 33.333 22.31 0.00 0.00 2.17
3694 3874 9.727627 GCATAGAAATAAATGAAGAAAGAGTGG 57.272 33.333 0.00 0.00 0.00 4.00
3704 3884 9.660180 AAATGAAGAAAGAGTGGAGTAAGTATC 57.340 33.333 0.00 0.00 0.00 2.24
3705 3885 7.776618 TGAAGAAAGAGTGGAGTAAGTATCA 57.223 36.000 0.00 0.00 0.00 2.15
3706 3886 8.367660 TGAAGAAAGAGTGGAGTAAGTATCAT 57.632 34.615 0.00 0.00 0.00 2.45
3707 3887 8.253810 TGAAGAAAGAGTGGAGTAAGTATCATG 58.746 37.037 0.00 0.00 0.00 3.07
3708 3888 7.726033 AGAAAGAGTGGAGTAAGTATCATGT 57.274 36.000 0.00 0.00 0.00 3.21
3709 3889 7.777095 AGAAAGAGTGGAGTAAGTATCATGTC 58.223 38.462 0.00 0.00 0.00 3.06
3710 3890 7.397476 AGAAAGAGTGGAGTAAGTATCATGTCA 59.603 37.037 0.00 0.00 0.00 3.58
3711 3891 7.667575 AAGAGTGGAGTAAGTATCATGTCAT 57.332 36.000 0.00 0.00 0.00 3.06
3712 3892 7.048629 AGAGTGGAGTAAGTATCATGTCATG 57.951 40.000 6.47 6.47 0.00 3.07
3713 3893 6.836007 AGAGTGGAGTAAGTATCATGTCATGA 59.164 38.462 17.70 17.70 44.55 3.07
3738 3918 9.755064 GATACCGTATCATATTAAATGTTGTGC 57.245 33.333 12.83 0.00 35.28 4.57
3739 3919 7.801716 ACCGTATCATATTAAATGTTGTGCT 57.198 32.000 0.00 0.00 0.00 4.40
3740 3920 8.896320 ACCGTATCATATTAAATGTTGTGCTA 57.104 30.769 0.00 0.00 0.00 3.49
3741 3921 9.332502 ACCGTATCATATTAAATGTTGTGCTAA 57.667 29.630 0.00 0.00 0.00 3.09
3752 3932 9.786105 TTAAATGTTGTGCTAATATGTGTCATG 57.214 29.630 0.00 0.00 0.00 3.07
3753 3933 5.233957 TGTTGTGCTAATATGTGTCATGC 57.766 39.130 0.00 0.00 0.00 4.06
3754 3934 4.699257 TGTTGTGCTAATATGTGTCATGCA 59.301 37.500 0.00 0.00 0.00 3.96
3755 3935 5.357596 TGTTGTGCTAATATGTGTCATGCAT 59.642 36.000 0.00 0.00 0.00 3.96
3756 3936 5.427036 TGTGCTAATATGTGTCATGCATG 57.573 39.130 21.07 21.07 0.00 4.06
3757 3937 5.124645 TGTGCTAATATGTGTCATGCATGA 58.875 37.500 25.42 25.42 0.00 3.07
3802 3982 9.645059 ATGATACTAACACATGATACTATGCAC 57.355 33.333 0.00 0.00 0.00 4.57
3803 3983 8.860088 TGATACTAACACATGATACTATGCACT 58.140 33.333 0.00 0.00 0.00 4.40
3806 3986 8.007405 ACTAACACATGATACTATGCACTACA 57.993 34.615 0.00 0.00 0.00 2.74
3807 3987 8.138074 ACTAACACATGATACTATGCACTACAG 58.862 37.037 0.00 0.00 0.00 2.74
3808 3988 6.715347 ACACATGATACTATGCACTACAGA 57.285 37.500 0.00 0.00 0.00 3.41
3809 3989 7.295322 ACACATGATACTATGCACTACAGAT 57.705 36.000 0.00 0.00 0.00 2.90
3810 3990 7.150640 ACACATGATACTATGCACTACAGATG 58.849 38.462 0.00 0.00 0.00 2.90
3811 3991 7.150640 CACATGATACTATGCACTACAGATGT 58.849 38.462 0.00 0.00 0.00 3.06
3812 3992 8.299570 CACATGATACTATGCACTACAGATGTA 58.700 37.037 0.00 0.00 0.00 2.29
3827 4007 8.905660 CTACAGATGTAGTACATGGTACTAGT 57.094 38.462 20.46 12.68 39.27 2.57
3828 4008 7.569639 ACAGATGTAGTACATGGTACTAGTG 57.430 40.000 20.46 12.21 39.27 2.74
3829 4009 7.117397 ACAGATGTAGTACATGGTACTAGTGT 58.883 38.462 20.46 12.68 39.27 3.55
3830 4010 8.270030 ACAGATGTAGTACATGGTACTAGTGTA 58.730 37.037 20.46 0.00 39.27 2.90
3831 4011 9.286170 CAGATGTAGTACATGGTACTAGTGTAT 57.714 37.037 20.46 8.53 39.27 2.29
3832 4012 9.286170 AGATGTAGTACATGGTACTAGTGTATG 57.714 37.037 20.46 9.57 39.27 2.39
3833 4013 9.281371 GATGTAGTACATGGTACTAGTGTATGA 57.719 37.037 20.46 0.00 39.27 2.15
3834 4014 9.809395 ATGTAGTACATGGTACTAGTGTATGAT 57.191 33.333 15.07 8.97 37.45 2.45
3838 4018 9.504708 AGTACATGGTACTAGTGTATGATACTC 57.495 37.037 17.39 0.22 31.71 2.59
3839 4019 9.281371 GTACATGGTACTAGTGTATGATACTCA 57.719 37.037 17.39 4.11 31.71 3.41
3840 4020 8.167605 ACATGGTACTAGTGTATGATACTCAC 57.832 38.462 17.39 0.00 0.00 3.51
3841 4021 7.230913 ACATGGTACTAGTGTATGATACTCACC 59.769 40.741 17.39 8.76 33.21 4.02
3842 4022 6.665695 TGGTACTAGTGTATGATACTCACCA 58.334 40.000 5.39 3.58 34.74 4.17
3843 4023 7.295340 TGGTACTAGTGTATGATACTCACCAT 58.705 38.462 5.39 0.00 33.42 3.55
3844 4024 7.783119 TGGTACTAGTGTATGATACTCACCATT 59.217 37.037 5.39 0.00 33.42 3.16
3845 4025 9.293404 GGTACTAGTGTATGATACTCACCATTA 57.707 37.037 5.39 0.00 33.21 1.90
3847 4027 7.872881 ACTAGTGTATGATACTCACCATTACG 58.127 38.462 4.03 0.00 33.21 3.18
3848 4028 6.954487 AGTGTATGATACTCACCATTACGA 57.046 37.500 4.03 0.00 33.21 3.43
3849 4029 6.736123 AGTGTATGATACTCACCATTACGAC 58.264 40.000 4.03 0.00 33.21 4.34
3850 4030 5.919141 GTGTATGATACTCACCATTACGACC 59.081 44.000 4.03 0.00 0.00 4.79
3851 4031 5.595133 TGTATGATACTCACCATTACGACCA 59.405 40.000 4.03 0.00 0.00 4.02
3852 4032 4.649088 TGATACTCACCATTACGACCAG 57.351 45.455 0.00 0.00 0.00 4.00
3853 4033 2.953466 TACTCACCATTACGACCAGC 57.047 50.000 0.00 0.00 0.00 4.85
3854 4034 0.249398 ACTCACCATTACGACCAGCC 59.751 55.000 0.00 0.00 0.00 4.85
3855 4035 0.537188 CTCACCATTACGACCAGCCT 59.463 55.000 0.00 0.00 0.00 4.58
3856 4036 0.981183 TCACCATTACGACCAGCCTT 59.019 50.000 0.00 0.00 0.00 4.35
3857 4037 2.167693 CTCACCATTACGACCAGCCTTA 59.832 50.000 0.00 0.00 0.00 2.69
3858 4038 2.568062 TCACCATTACGACCAGCCTTAA 59.432 45.455 0.00 0.00 0.00 1.85
3859 4039 2.676342 CACCATTACGACCAGCCTTAAC 59.324 50.000 0.00 0.00 0.00 2.01
3860 4040 2.285977 CCATTACGACCAGCCTTAACC 58.714 52.381 0.00 0.00 0.00 2.85
3861 4041 2.355310 CCATTACGACCAGCCTTAACCA 60.355 50.000 0.00 0.00 0.00 3.67
3862 4042 3.340034 CATTACGACCAGCCTTAACCAA 58.660 45.455 0.00 0.00 0.00 3.67
3863 4043 2.754946 TACGACCAGCCTTAACCAAG 57.245 50.000 0.00 0.00 0.00 3.61
3864 4044 0.763035 ACGACCAGCCTTAACCAAGT 59.237 50.000 0.00 0.00 0.00 3.16
3865 4045 1.270678 ACGACCAGCCTTAACCAAGTC 60.271 52.381 0.00 0.00 0.00 3.01
3866 4046 1.002087 CGACCAGCCTTAACCAAGTCT 59.998 52.381 0.00 0.00 0.00 3.24
3867 4047 2.701107 GACCAGCCTTAACCAAGTCTC 58.299 52.381 0.00 0.00 0.00 3.36
3868 4048 2.038557 GACCAGCCTTAACCAAGTCTCA 59.961 50.000 0.00 0.00 0.00 3.27
3869 4049 2.039084 ACCAGCCTTAACCAAGTCTCAG 59.961 50.000 0.00 0.00 0.00 3.35
3870 4050 2.039084 CCAGCCTTAACCAAGTCTCAGT 59.961 50.000 0.00 0.00 0.00 3.41
3871 4051 3.330267 CAGCCTTAACCAAGTCTCAGTC 58.670 50.000 0.00 0.00 0.00 3.51
3872 4052 2.972713 AGCCTTAACCAAGTCTCAGTCA 59.027 45.455 0.00 0.00 0.00 3.41
3873 4053 3.391296 AGCCTTAACCAAGTCTCAGTCAA 59.609 43.478 0.00 0.00 0.00 3.18
3874 4054 3.748568 GCCTTAACCAAGTCTCAGTCAAG 59.251 47.826 0.00 0.00 0.00 3.02
3875 4055 3.748568 CCTTAACCAAGTCTCAGTCAAGC 59.251 47.826 0.00 0.00 0.00 4.01
3876 4056 1.871080 AACCAAGTCTCAGTCAAGCG 58.129 50.000 0.00 0.00 0.00 4.68
3877 4057 1.040646 ACCAAGTCTCAGTCAAGCGA 58.959 50.000 0.00 0.00 0.00 4.93
3878 4058 1.620819 ACCAAGTCTCAGTCAAGCGAT 59.379 47.619 0.00 0.00 0.00 4.58
3879 4059 2.826128 ACCAAGTCTCAGTCAAGCGATA 59.174 45.455 0.00 0.00 0.00 2.92
3880 4060 3.449018 ACCAAGTCTCAGTCAAGCGATAT 59.551 43.478 0.00 0.00 0.00 1.63
3881 4061 4.645136 ACCAAGTCTCAGTCAAGCGATATA 59.355 41.667 0.00 0.00 0.00 0.86
3882 4062 5.218885 CCAAGTCTCAGTCAAGCGATATAG 58.781 45.833 0.00 0.00 0.00 1.31
3883 4063 5.221145 CCAAGTCTCAGTCAAGCGATATAGT 60.221 44.000 0.00 0.00 0.00 2.12
3884 4064 6.017026 CCAAGTCTCAGTCAAGCGATATAGTA 60.017 42.308 0.00 0.00 0.00 1.82
3885 4065 7.308891 CCAAGTCTCAGTCAAGCGATATAGTAT 60.309 40.741 0.00 0.00 0.00 2.12
3886 4066 7.139896 AGTCTCAGTCAAGCGATATAGTATG 57.860 40.000 0.00 0.00 0.00 2.39
3887 4067 6.712998 AGTCTCAGTCAAGCGATATAGTATGT 59.287 38.462 0.00 0.00 0.00 2.29
3888 4068 7.878644 AGTCTCAGTCAAGCGATATAGTATGTA 59.121 37.037 0.00 0.00 0.00 2.29
3889 4069 8.504815 GTCTCAGTCAAGCGATATAGTATGTAA 58.495 37.037 0.00 0.00 0.00 2.41
3890 4070 8.722394 TCTCAGTCAAGCGATATAGTATGTAAG 58.278 37.037 0.00 0.00 0.00 2.34
3891 4071 8.617290 TCAGTCAAGCGATATAGTATGTAAGA 57.383 34.615 0.00 0.00 0.00 2.10
3892 4072 9.063615 TCAGTCAAGCGATATAGTATGTAAGAA 57.936 33.333 0.00 0.00 0.00 2.52
3893 4073 9.335891 CAGTCAAGCGATATAGTATGTAAGAAG 57.664 37.037 0.00 0.00 0.00 2.85
3894 4074 9.286170 AGTCAAGCGATATAGTATGTAAGAAGA 57.714 33.333 0.00 0.00 0.00 2.87
3895 4075 9.894783 GTCAAGCGATATAGTATGTAAGAAGAA 57.105 33.333 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.903350 TCCGACAGCCGCGCTATA 60.903 61.111 5.56 0.00 36.40 1.31
2 3 4.271816 CTCCGACAGCCGCGCTAT 62.272 66.667 5.56 0.00 36.40 2.97
7 8 4.521062 AGCATCTCCGACAGCCGC 62.521 66.667 0.00 0.00 36.84 6.53
8 9 2.279120 GAGCATCTCCGACAGCCG 60.279 66.667 0.00 0.00 38.18 5.52
35 36 5.312120 TCGCCAACTACTCTCTCTTTAAG 57.688 43.478 0.00 0.00 0.00 1.85
39 40 4.220821 TCAATTCGCCAACTACTCTCTCTT 59.779 41.667 0.00 0.00 0.00 2.85
71 72 4.927425 ACGCGTGTTACATCTTTAGTTCAT 59.073 37.500 12.93 0.00 0.00 2.57
127 129 2.776312 TTATCGCACCGTGAGAGATC 57.224 50.000 10.81 0.00 27.73 2.75
132 134 4.150627 CCTAATTGATTATCGCACCGTGAG 59.849 45.833 1.65 0.00 0.00 3.51
156 158 5.351189 CGACCATATTTGTCTGATTGTGACA 59.649 40.000 0.00 0.00 41.94 3.58
177 179 0.461870 TGTAGCACCATGGCATCGAC 60.462 55.000 13.04 8.11 35.83 4.20
216 218 6.241207 ACAAATCTTGTATTGTTCACCTCG 57.759 37.500 0.00 0.00 43.27 4.63
275 282 6.017687 GTGGATGTGGTACGTACTTTTTCTTT 60.018 38.462 24.07 3.02 0.00 2.52
279 286 4.753107 CAGTGGATGTGGTACGTACTTTTT 59.247 41.667 24.07 8.34 0.00 1.94
333 341 7.694388 TCTAGTACAAGCTATGCAATTAACG 57.306 36.000 0.00 0.00 0.00 3.18
377 391 7.053316 AGAAGAGAGACTATGTCAATGGATG 57.947 40.000 0.46 0.00 34.60 3.51
449 463 5.413499 AGTACATGATTTGATTTGCTTGGC 58.587 37.500 0.00 0.00 0.00 4.52
475 489 7.763528 GCTAGCTTGTCTTGATGCATAGTATAT 59.236 37.037 7.70 0.00 0.00 0.86
533 551 4.032786 GGCTTACAAAAACTGTGCTTTGTG 59.967 41.667 22.02 12.80 43.69 3.33
550 573 0.392595 CAAGTTCCTCCCCGGCTTAC 60.393 60.000 0.00 0.00 0.00 2.34
576 599 3.304391 GCTAGAGCTCTGACTAACATCGG 60.304 52.174 26.78 3.11 38.21 4.18
667 691 6.051717 CGACATTTGGAGATTAATCCTGACT 58.948 40.000 11.92 0.00 40.29 3.41
803 829 7.762382 TCTCAAGCCACACTATATATGTATCG 58.238 38.462 0.00 0.00 0.00 2.92
844 876 1.043116 GCTGGGGAATGGTTAAGCCC 61.043 60.000 1.51 0.00 39.93 5.19
960 1000 1.271379 GGCCCTGCTTAGTTCTTCACA 60.271 52.381 0.00 0.00 0.00 3.58
964 1004 0.250513 CTCGGCCCTGCTTAGTTCTT 59.749 55.000 0.00 0.00 0.00 2.52
1103 1153 4.748102 CAGACGTACTTAACCAAGAAAGCA 59.252 41.667 0.00 0.00 35.60 3.91
1154 1204 4.270566 TCTGCAAAACAACAACGTACGTAT 59.729 37.500 23.12 10.46 0.00 3.06
1192 1242 2.185350 CTGGTCTTCCGCGCATCT 59.815 61.111 8.75 0.00 36.30 2.90
1290 1343 3.672295 CTGGTCTTGAGGAGGGCGC 62.672 68.421 0.00 0.00 0.00 6.53
1315 1368 1.254954 GGAGTAATATCCGGCCGTCT 58.745 55.000 26.12 13.37 0.00 4.18
1630 1686 1.382695 TCCTTGATCCTCGGGGTCC 60.383 63.158 0.00 0.00 0.00 4.46
1807 1863 1.229529 GAGGTTGGGGAGTGGGAGA 60.230 63.158 0.00 0.00 0.00 3.71
1912 1968 1.451927 GTCGCATGAGCCAATGGGA 60.452 57.895 10.77 10.77 44.49 4.37
1916 1972 1.522355 CGAGGTCGCATGAGCCAAT 60.522 57.895 0.00 0.00 43.71 3.16
2242 2337 4.383861 TCGGTGAGCTGCTGCCAG 62.384 66.667 7.01 6.18 42.13 4.85
2555 2661 4.079850 CGAGGCAGCAGGAGCACT 62.080 66.667 0.00 0.00 45.49 4.40
2747 2857 2.972505 CAACGCGCAGAACCTGGT 60.973 61.111 5.73 0.00 31.21 4.00
2779 2889 1.592669 GTCATACTGCAGCGCCGAT 60.593 57.895 15.27 0.00 0.00 4.18
2783 2893 3.264897 CCGGTCATACTGCAGCGC 61.265 66.667 15.27 0.00 32.16 5.92
2948 3059 6.224420 ACCGACGTCAGATTTTTCTAAAAG 57.776 37.500 17.16 0.00 0.00 2.27
2967 3135 0.101759 CGGCTAGGAAAATCGACCGA 59.898 55.000 0.00 0.00 41.61 4.69
2970 3138 1.664151 CCAACGGCTAGGAAAATCGAC 59.336 52.381 0.00 0.00 0.00 4.20
3011 3179 0.377905 GGGAGTAGAACGAGACGCTC 59.622 60.000 0.00 0.00 0.00 5.03
3015 3183 1.204231 GGGTTGGGAGTAGAACGAGAC 59.796 57.143 0.00 0.00 0.00 3.36
3016 3184 1.553706 GGGTTGGGAGTAGAACGAGA 58.446 55.000 0.00 0.00 0.00 4.04
3018 3186 0.115745 AGGGGTTGGGAGTAGAACGA 59.884 55.000 0.00 0.00 0.00 3.85
3019 3187 0.535797 GAGGGGTTGGGAGTAGAACG 59.464 60.000 0.00 0.00 0.00 3.95
3020 3188 1.832366 GAGAGGGGTTGGGAGTAGAAC 59.168 57.143 0.00 0.00 0.00 3.01
3022 3190 1.394532 AGAGAGGGGTTGGGAGTAGA 58.605 55.000 0.00 0.00 0.00 2.59
3023 3191 2.112190 GAAGAGAGGGGTTGGGAGTAG 58.888 57.143 0.00 0.00 0.00 2.57
3025 3193 0.494095 AGAAGAGAGGGGTTGGGAGT 59.506 55.000 0.00 0.00 0.00 3.85
3049 3217 1.621672 GGAAGAGGAGGGTGCTCAGG 61.622 65.000 0.00 0.00 37.29 3.86
3050 3218 1.904032 GGAAGAGGAGGGTGCTCAG 59.096 63.158 0.00 0.00 37.29 3.35
3089 3269 0.687757 TCGCCTAAGACAGGGATGCT 60.688 55.000 0.00 0.00 45.66 3.79
3090 3270 0.249657 CTCGCCTAAGACAGGGATGC 60.250 60.000 0.00 0.00 45.66 3.91
3103 3283 2.203509 CGGGATAGGACCTCGCCT 60.204 66.667 0.00 0.00 42.15 5.52
3153 3333 1.622811 AGCTCTGAGGGTGAGACAAAG 59.377 52.381 6.83 0.00 33.68 2.77
3191 3371 2.919602 TCTTATGAACCAAAGGAGGCCT 59.080 45.455 3.86 3.86 33.87 5.19
3192 3372 3.366052 TCTTATGAACCAAAGGAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
3193 3373 5.930135 TCTATCTTATGAACCAAAGGAGGC 58.070 41.667 0.00 0.00 0.00 4.70
3194 3374 8.844244 CATTTCTATCTTATGAACCAAAGGAGG 58.156 37.037 0.00 0.00 0.00 4.30
3195 3375 9.401058 ACATTTCTATCTTATGAACCAAAGGAG 57.599 33.333 0.00 0.00 0.00 3.69
3196 3376 9.753674 AACATTTCTATCTTATGAACCAAAGGA 57.246 29.630 0.00 0.00 0.00 3.36
3231 3411 9.715121 TGTCGTTTCACTTCCTATAATTTTACT 57.285 29.630 0.00 0.00 0.00 2.24
3234 3414 7.968405 GCATGTCGTTTCACTTCCTATAATTTT 59.032 33.333 0.00 0.00 0.00 1.82
3235 3415 7.120579 TGCATGTCGTTTCACTTCCTATAATTT 59.879 33.333 0.00 0.00 0.00 1.82
3236 3416 6.597672 TGCATGTCGTTTCACTTCCTATAATT 59.402 34.615 0.00 0.00 0.00 1.40
3237 3417 6.112734 TGCATGTCGTTTCACTTCCTATAAT 58.887 36.000 0.00 0.00 0.00 1.28
3238 3418 5.483811 TGCATGTCGTTTCACTTCCTATAA 58.516 37.500 0.00 0.00 0.00 0.98
3239 3419 5.079689 TGCATGTCGTTTCACTTCCTATA 57.920 39.130 0.00 0.00 0.00 1.31
3240 3420 3.937814 TGCATGTCGTTTCACTTCCTAT 58.062 40.909 0.00 0.00 0.00 2.57
3241 3421 3.394674 TGCATGTCGTTTCACTTCCTA 57.605 42.857 0.00 0.00 0.00 2.94
3242 3422 2.254546 TGCATGTCGTTTCACTTCCT 57.745 45.000 0.00 0.00 0.00 3.36
3243 3423 2.744202 AGATGCATGTCGTTTCACTTCC 59.256 45.455 2.46 0.00 0.00 3.46
3244 3424 3.433274 TGAGATGCATGTCGTTTCACTTC 59.567 43.478 18.05 0.00 0.00 3.01
3245 3425 3.402110 TGAGATGCATGTCGTTTCACTT 58.598 40.909 18.05 0.00 0.00 3.16
3246 3426 3.044235 TGAGATGCATGTCGTTTCACT 57.956 42.857 18.05 0.00 0.00 3.41
3247 3427 3.811722 TTGAGATGCATGTCGTTTCAC 57.188 42.857 18.05 0.00 0.00 3.18
3248 3428 4.142622 GGAATTGAGATGCATGTCGTTTCA 60.143 41.667 26.05 8.78 0.00 2.69
3249 3429 4.095483 AGGAATTGAGATGCATGTCGTTTC 59.905 41.667 21.02 21.02 0.00 2.78
3250 3430 4.012374 AGGAATTGAGATGCATGTCGTTT 58.988 39.130 18.05 13.64 0.00 3.60
3251 3431 3.614092 AGGAATTGAGATGCATGTCGTT 58.386 40.909 18.05 14.89 0.00 3.85
3252 3432 3.272574 AGGAATTGAGATGCATGTCGT 57.727 42.857 18.05 7.45 0.00 4.34
3253 3433 6.393171 TCTATAGGAATTGAGATGCATGTCG 58.607 40.000 18.05 1.18 0.00 4.35
3254 3434 7.609960 TCTCTATAGGAATTGAGATGCATGTC 58.390 38.462 16.63 16.63 38.53 3.06
3255 3435 7.550597 TCTCTATAGGAATTGAGATGCATGT 57.449 36.000 2.46 0.00 38.53 3.21
3256 3436 8.843885 TTTCTCTATAGGAATTGAGATGCATG 57.156 34.615 2.46 0.00 41.55 4.06
3257 3437 8.878211 TCTTTCTCTATAGGAATTGAGATGCAT 58.122 33.333 0.00 0.00 41.55 3.96
3258 3438 8.255111 TCTTTCTCTATAGGAATTGAGATGCA 57.745 34.615 0.00 0.00 41.55 3.96
3259 3439 8.584157 TCTCTTTCTCTATAGGAATTGAGATGC 58.416 37.037 19.11 0.00 41.55 3.91
3262 3442 9.653516 ACATCTCTTTCTCTATAGGAATTGAGA 57.346 33.333 21.74 21.74 40.68 3.27
3263 3443 9.912634 GACATCTCTTTCTCTATAGGAATTGAG 57.087 37.037 16.99 16.99 36.61 3.02
3264 3444 9.426534 TGACATCTCTTTCTCTATAGGAATTGA 57.573 33.333 0.00 4.25 0.00 2.57
3269 3449 9.426534 TCAAATGACATCTCTTTCTCTATAGGA 57.573 33.333 0.00 0.00 0.00 2.94
3272 3452 9.486497 GCATCAAATGACATCTCTTTCTCTATA 57.514 33.333 0.00 0.00 0.00 1.31
3273 3453 7.991460 TGCATCAAATGACATCTCTTTCTCTAT 59.009 33.333 0.00 0.00 0.00 1.98
3274 3454 7.333323 TGCATCAAATGACATCTCTTTCTCTA 58.667 34.615 0.00 0.00 0.00 2.43
3275 3455 6.178324 TGCATCAAATGACATCTCTTTCTCT 58.822 36.000 0.00 0.00 0.00 3.10
3276 3456 6.432607 TGCATCAAATGACATCTCTTTCTC 57.567 37.500 0.00 0.00 0.00 2.87
3277 3457 8.568794 CATATGCATCAAATGACATCTCTTTCT 58.431 33.333 0.19 0.00 32.25 2.52
3278 3458 8.565416 TCATATGCATCAAATGACATCTCTTTC 58.435 33.333 0.19 0.00 32.25 2.62
3279 3459 8.459911 TCATATGCATCAAATGACATCTCTTT 57.540 30.769 0.19 0.00 32.25 2.52
3280 3460 8.637196 ATCATATGCATCAAATGACATCTCTT 57.363 30.769 11.85 0.00 32.74 2.85
3281 3461 9.384764 CTATCATATGCATCAAATGACATCTCT 57.615 33.333 11.85 0.25 32.74 3.10
3282 3462 8.613482 CCTATCATATGCATCAAATGACATCTC 58.387 37.037 11.85 0.00 32.74 2.75
3283 3463 8.326529 TCCTATCATATGCATCAAATGACATCT 58.673 33.333 11.85 1.16 32.74 2.90
3284 3464 8.502105 TCCTATCATATGCATCAAATGACATC 57.498 34.615 11.85 0.00 32.74 3.06
3285 3465 8.873186 TTCCTATCATATGCATCAAATGACAT 57.127 30.769 11.85 2.07 32.74 3.06
3286 3466 8.873186 ATTCCTATCATATGCATCAAATGACA 57.127 30.769 11.85 1.40 32.74 3.58
3291 3471 9.985730 GGAAAAATTCCTATCATATGCATCAAA 57.014 29.630 0.19 0.00 46.57 2.69
3310 3490 9.247861 ACATTAGCTAAGACTCAATGGAAAAAT 57.752 29.630 12.54 0.00 32.20 1.82
3311 3491 8.635765 ACATTAGCTAAGACTCAATGGAAAAA 57.364 30.769 12.54 0.00 32.20 1.94
3312 3492 8.635765 AACATTAGCTAAGACTCAATGGAAAA 57.364 30.769 12.54 0.00 32.20 2.29
3313 3493 8.103305 AGAACATTAGCTAAGACTCAATGGAAA 58.897 33.333 12.54 0.00 32.20 3.13
3314 3494 7.624549 AGAACATTAGCTAAGACTCAATGGAA 58.375 34.615 12.54 0.00 32.20 3.53
3315 3495 7.187824 AGAACATTAGCTAAGACTCAATGGA 57.812 36.000 12.54 0.00 32.20 3.41
3316 3496 7.856145 AAGAACATTAGCTAAGACTCAATGG 57.144 36.000 12.54 0.00 32.20 3.16
3317 3497 9.766277 GAAAAGAACATTAGCTAAGACTCAATG 57.234 33.333 12.54 6.93 33.75 2.82
3318 3498 8.951243 GGAAAAGAACATTAGCTAAGACTCAAT 58.049 33.333 12.54 0.00 0.00 2.57
3319 3499 8.157476 AGGAAAAGAACATTAGCTAAGACTCAA 58.843 33.333 12.54 0.00 0.00 3.02
3320 3500 7.680730 AGGAAAAGAACATTAGCTAAGACTCA 58.319 34.615 12.54 0.00 0.00 3.41
3321 3501 8.038351 AGAGGAAAAGAACATTAGCTAAGACTC 58.962 37.037 12.54 7.69 0.00 3.36
3322 3502 7.912719 AGAGGAAAAGAACATTAGCTAAGACT 58.087 34.615 12.54 5.66 0.00 3.24
3323 3503 9.654663 TTAGAGGAAAAGAACATTAGCTAAGAC 57.345 33.333 12.54 3.53 0.00 3.01
3342 3522 9.799106 GGAATCAATCCTTCATATTTTAGAGGA 57.201 33.333 0.00 0.00 45.56 3.71
3371 3551 8.186985 AGAATGGATTCCTATTCCTATGTAGGA 58.813 37.037 17.23 4.66 43.54 2.94
3372 3552 8.386012 AGAATGGATTCCTATTCCTATGTAGG 57.614 38.462 17.23 0.00 39.95 3.18
3375 3555 9.170890 TGTAAGAATGGATTCCTATTCCTATGT 57.829 33.333 17.23 4.00 37.51 2.29
3378 3558 9.847224 GTTTGTAAGAATGGATTCCTATTCCTA 57.153 33.333 17.23 10.62 37.51 2.94
3379 3559 7.780271 GGTTTGTAAGAATGGATTCCTATTCCT 59.220 37.037 17.23 11.29 37.51 3.36
3380 3560 7.559897 TGGTTTGTAAGAATGGATTCCTATTCC 59.440 37.037 17.23 8.59 37.51 3.01
3381 3561 8.519799 TGGTTTGTAAGAATGGATTCCTATTC 57.480 34.615 14.84 14.84 37.51 1.75
3382 3562 8.893563 TTGGTTTGTAAGAATGGATTCCTATT 57.106 30.769 3.95 2.49 37.51 1.73
3383 3563 8.893563 TTTGGTTTGTAAGAATGGATTCCTAT 57.106 30.769 3.95 0.00 37.51 2.57
3384 3564 7.396055 CCTTTGGTTTGTAAGAATGGATTCCTA 59.604 37.037 3.95 0.00 37.51 2.94
3385 3565 6.211384 CCTTTGGTTTGTAAGAATGGATTCCT 59.789 38.462 3.95 0.00 37.51 3.36
3386 3566 6.398095 CCTTTGGTTTGTAAGAATGGATTCC 58.602 40.000 0.00 0.00 37.51 3.01
3387 3567 6.398095 CCCTTTGGTTTGTAAGAATGGATTC 58.602 40.000 0.00 0.00 37.06 2.52
3388 3568 5.279960 GCCCTTTGGTTTGTAAGAATGGATT 60.280 40.000 0.00 0.00 0.00 3.01
3389 3569 4.222810 GCCCTTTGGTTTGTAAGAATGGAT 59.777 41.667 0.00 0.00 0.00 3.41
3390 3570 3.576550 GCCCTTTGGTTTGTAAGAATGGA 59.423 43.478 0.00 0.00 0.00 3.41
3391 3571 3.578282 AGCCCTTTGGTTTGTAAGAATGG 59.422 43.478 0.00 0.00 0.00 3.16
3392 3572 4.871933 AGCCCTTTGGTTTGTAAGAATG 57.128 40.909 0.00 0.00 0.00 2.67
3393 3573 4.898861 TGAAGCCCTTTGGTTTGTAAGAAT 59.101 37.500 0.00 0.00 34.87 2.40
3394 3574 4.282496 TGAAGCCCTTTGGTTTGTAAGAA 58.718 39.130 0.00 0.00 34.87 2.52
3395 3575 3.904717 TGAAGCCCTTTGGTTTGTAAGA 58.095 40.909 0.00 0.00 34.87 2.10
3396 3576 4.664150 TTGAAGCCCTTTGGTTTGTAAG 57.336 40.909 0.00 0.00 34.87 2.34
3397 3577 4.141824 CCTTTGAAGCCCTTTGGTTTGTAA 60.142 41.667 0.00 0.00 34.87 2.41
3398 3578 3.386402 CCTTTGAAGCCCTTTGGTTTGTA 59.614 43.478 0.00 0.00 34.87 2.41
3399 3579 2.170397 CCTTTGAAGCCCTTTGGTTTGT 59.830 45.455 0.00 0.00 34.87 2.83
3400 3580 2.433970 TCCTTTGAAGCCCTTTGGTTTG 59.566 45.455 0.00 0.00 34.87 2.93
3401 3581 2.758130 TCCTTTGAAGCCCTTTGGTTT 58.242 42.857 0.00 0.00 37.85 3.27
3402 3582 2.470057 TCCTTTGAAGCCCTTTGGTT 57.530 45.000 0.00 0.00 37.39 3.67
3403 3583 2.470057 TTCCTTTGAAGCCCTTTGGT 57.530 45.000 0.00 0.00 0.00 3.67
3404 3584 4.356405 AATTTCCTTTGAAGCCCTTTGG 57.644 40.909 0.00 0.00 0.00 3.28
3405 3585 5.239306 GGAAAATTTCCTTTGAAGCCCTTTG 59.761 40.000 17.01 0.00 46.57 2.77
3406 3586 5.376625 GGAAAATTTCCTTTGAAGCCCTTT 58.623 37.500 17.01 0.00 46.57 3.11
3407 3587 4.973168 GGAAAATTTCCTTTGAAGCCCTT 58.027 39.130 17.01 0.00 46.57 3.95
3408 3588 4.623932 GGAAAATTTCCTTTGAAGCCCT 57.376 40.909 17.01 0.00 46.57 5.19
3449 3629 9.803315 GGTTTGTAGGAATTTCATAGGATTTTC 57.197 33.333 0.00 0.00 0.00 2.29
3450 3630 9.320295 TGGTTTGTAGGAATTTCATAGGATTTT 57.680 29.630 0.00 0.00 0.00 1.82
3451 3631 8.893563 TGGTTTGTAGGAATTTCATAGGATTT 57.106 30.769 0.00 0.00 0.00 2.17
3452 3632 8.893563 TTGGTTTGTAGGAATTTCATAGGATT 57.106 30.769 0.00 0.00 0.00 3.01
3453 3633 8.893563 TTTGGTTTGTAGGAATTTCATAGGAT 57.106 30.769 0.00 0.00 0.00 3.24
3454 3634 7.396055 CCTTTGGTTTGTAGGAATTTCATAGGA 59.604 37.037 0.00 0.00 0.00 2.94
3455 3635 7.396055 TCCTTTGGTTTGTAGGAATTTCATAGG 59.604 37.037 0.00 0.00 35.20 2.57
3456 3636 8.348285 TCCTTTGGTTTGTAGGAATTTCATAG 57.652 34.615 0.00 0.00 35.20 2.23
3457 3637 7.093945 GCTCCTTTGGTTTGTAGGAATTTCATA 60.094 37.037 0.00 0.00 37.61 2.15
3458 3638 6.295292 GCTCCTTTGGTTTGTAGGAATTTCAT 60.295 38.462 0.00 0.00 37.61 2.57
3459 3639 5.010617 GCTCCTTTGGTTTGTAGGAATTTCA 59.989 40.000 0.00 0.00 37.61 2.69
3460 3640 5.470368 GCTCCTTTGGTTTGTAGGAATTTC 58.530 41.667 0.00 0.00 37.61 2.17
3461 3641 4.283467 GGCTCCTTTGGTTTGTAGGAATTT 59.717 41.667 0.00 0.00 37.61 1.82
3462 3642 3.832490 GGCTCCTTTGGTTTGTAGGAATT 59.168 43.478 0.00 0.00 37.61 2.17
3463 3643 3.431415 GGCTCCTTTGGTTTGTAGGAAT 58.569 45.455 0.00 0.00 37.61 3.01
3464 3644 2.490168 GGGCTCCTTTGGTTTGTAGGAA 60.490 50.000 0.00 0.00 37.61 3.36
3465 3645 1.074889 GGGCTCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 36.65 2.94
3466 3646 1.075536 AGGGCTCCTTTGGTTTGTAGG 59.924 52.381 0.00 0.00 0.00 3.18
3467 3647 2.586648 AGGGCTCCTTTGGTTTGTAG 57.413 50.000 0.00 0.00 0.00 2.74
3468 3648 4.668138 ATAAGGGCTCCTTTGGTTTGTA 57.332 40.909 11.15 0.00 41.69 2.41
3469 3649 3.542969 ATAAGGGCTCCTTTGGTTTGT 57.457 42.857 11.15 0.00 41.69 2.83
3470 3650 4.089361 AGAATAAGGGCTCCTTTGGTTTG 58.911 43.478 11.15 0.00 41.69 2.93
3471 3651 4.404185 AGAATAAGGGCTCCTTTGGTTT 57.596 40.909 11.15 2.66 41.69 3.27
3472 3652 4.344978 GAAGAATAAGGGCTCCTTTGGTT 58.655 43.478 11.15 5.58 41.69 3.67
3473 3653 3.309193 GGAAGAATAAGGGCTCCTTTGGT 60.309 47.826 11.15 0.00 41.69 3.67
3474 3654 3.291584 GGAAGAATAAGGGCTCCTTTGG 58.708 50.000 11.15 0.00 41.69 3.28
3475 3655 3.950395 CTGGAAGAATAAGGGCTCCTTTG 59.050 47.826 11.15 0.00 39.95 2.77
3476 3656 3.852578 TCTGGAAGAATAAGGGCTCCTTT 59.147 43.478 11.15 0.00 39.92 3.11
3477 3657 3.464828 TCTGGAAGAATAAGGGCTCCTT 58.535 45.455 10.76 10.76 42.31 3.36
3478 3658 3.136641 TCTGGAAGAATAAGGGCTCCT 57.863 47.619 0.00 0.00 42.31 3.69
3487 3667 7.548075 GACATTAGTCGGTTTTCTGGAAGAATA 59.452 37.037 0.00 0.00 43.38 1.75
3488 3668 6.371825 GACATTAGTCGGTTTTCTGGAAGAAT 59.628 38.462 0.00 0.00 43.38 2.40
3489 3669 5.699458 GACATTAGTCGGTTTTCTGGAAGAA 59.301 40.000 0.00 0.00 42.71 2.52
3490 3670 5.223449 ACATTAGTCGGTTTTCTGGAAGA 57.777 39.130 0.00 0.00 44.68 2.87
3491 3671 5.532025 GACATTAGTCGGTTTTCTGGAAG 57.468 43.478 0.00 0.00 34.60 3.46
3519 3699 2.631663 TTGTAAGTCGCGTGAAAACG 57.368 45.000 5.77 0.00 0.00 3.60
3520 3700 5.055973 CGTTATTTGTAAGTCGCGTGAAAAC 59.944 40.000 5.77 0.00 0.00 2.43
3521 3701 5.051173 TCGTTATTTGTAAGTCGCGTGAAAA 60.051 36.000 5.77 0.00 0.00 2.29
3522 3702 4.443725 TCGTTATTTGTAAGTCGCGTGAAA 59.556 37.500 5.77 0.00 0.00 2.69
3523 3703 3.980134 TCGTTATTTGTAAGTCGCGTGAA 59.020 39.130 5.77 0.00 0.00 3.18
3524 3704 3.563508 TCGTTATTTGTAAGTCGCGTGA 58.436 40.909 5.77 0.00 0.00 4.35
3525 3705 3.957747 TCGTTATTTGTAAGTCGCGTG 57.042 42.857 5.77 0.00 0.00 5.34
3526 3706 5.004726 GGTATTCGTTATTTGTAAGTCGCGT 59.995 40.000 5.77 0.00 0.00 6.01
3527 3707 5.417862 GGTATTCGTTATTTGTAAGTCGCG 58.582 41.667 0.00 0.00 0.00 5.87
3528 3708 5.291614 TGGGTATTCGTTATTTGTAAGTCGC 59.708 40.000 0.00 0.00 0.00 5.19
3529 3709 6.890663 TGGGTATTCGTTATTTGTAAGTCG 57.109 37.500 0.00 0.00 0.00 4.18
3541 3721 9.985730 TCGTAGAATTATAAATGGGTATTCGTT 57.014 29.630 0.00 0.00 32.05 3.85
3542 3722 9.985730 TTCGTAGAATTATAAATGGGTATTCGT 57.014 29.630 0.00 0.00 45.90 3.85
3545 3725 9.734984 CCCTTCGTAGAATTATAAATGGGTATT 57.265 33.333 0.00 0.00 45.90 1.89
3546 3726 8.887393 ACCCTTCGTAGAATTATAAATGGGTAT 58.113 33.333 14.14 0.00 45.90 2.73
3547 3727 8.152246 CACCCTTCGTAGAATTATAAATGGGTA 58.848 37.037 14.84 0.00 45.90 3.69
3548 3728 6.996282 CACCCTTCGTAGAATTATAAATGGGT 59.004 38.462 11.62 11.62 45.90 4.51
3549 3729 6.996282 ACACCCTTCGTAGAATTATAAATGGG 59.004 38.462 10.73 10.73 45.90 4.00
3550 3730 7.041372 CCACACCCTTCGTAGAATTATAAATGG 60.041 40.741 0.00 0.00 45.90 3.16
3551 3731 7.519970 GCCACACCCTTCGTAGAATTATAAATG 60.520 40.741 0.00 0.00 45.90 2.32
3552 3732 6.485648 GCCACACCCTTCGTAGAATTATAAAT 59.514 38.462 0.00 0.00 45.90 1.40
3553 3733 5.818857 GCCACACCCTTCGTAGAATTATAAA 59.181 40.000 0.00 0.00 45.90 1.40
3554 3734 5.129815 AGCCACACCCTTCGTAGAATTATAA 59.870 40.000 0.00 0.00 45.90 0.98
3555 3735 4.652421 AGCCACACCCTTCGTAGAATTATA 59.348 41.667 0.00 0.00 45.90 0.98
3556 3736 3.454812 AGCCACACCCTTCGTAGAATTAT 59.545 43.478 0.00 0.00 45.90 1.28
3557 3737 2.835764 AGCCACACCCTTCGTAGAATTA 59.164 45.455 0.00 0.00 45.90 1.40
3558 3738 1.628846 AGCCACACCCTTCGTAGAATT 59.371 47.619 0.00 0.00 45.90 2.17
3559 3739 1.276622 AGCCACACCCTTCGTAGAAT 58.723 50.000 0.00 0.00 45.90 2.40
3560 3740 1.822990 CTAGCCACACCCTTCGTAGAA 59.177 52.381 0.00 0.00 45.90 2.10
3561 3741 1.471119 CTAGCCACACCCTTCGTAGA 58.529 55.000 0.00 0.00 0.00 2.59
3562 3742 0.460311 CCTAGCCACACCCTTCGTAG 59.540 60.000 0.00 0.00 0.00 3.51
3563 3743 0.251922 ACCTAGCCACACCCTTCGTA 60.252 55.000 0.00 0.00 0.00 3.43
3564 3744 1.535687 ACCTAGCCACACCCTTCGT 60.536 57.895 0.00 0.00 0.00 3.85
3565 3745 1.218316 GACCTAGCCACACCCTTCG 59.782 63.158 0.00 0.00 0.00 3.79
3566 3746 1.861982 TAGACCTAGCCACACCCTTC 58.138 55.000 0.00 0.00 0.00 3.46
3567 3747 2.188817 CTTAGACCTAGCCACACCCTT 58.811 52.381 0.00 0.00 0.00 3.95
3568 3748 1.078989 ACTTAGACCTAGCCACACCCT 59.921 52.381 0.00 0.00 0.00 4.34
3569 3749 1.481363 GACTTAGACCTAGCCACACCC 59.519 57.143 0.00 0.00 0.00 4.61
3570 3750 1.134560 CGACTTAGACCTAGCCACACC 59.865 57.143 0.00 0.00 0.00 4.16
3571 3751 2.089980 TCGACTTAGACCTAGCCACAC 58.910 52.381 0.00 0.00 0.00 3.82
3572 3752 2.089980 GTCGACTTAGACCTAGCCACA 58.910 52.381 8.70 0.00 35.22 4.17
3573 3753 2.097791 CAGTCGACTTAGACCTAGCCAC 59.902 54.545 17.26 0.00 41.83 5.01
3574 3754 2.026542 TCAGTCGACTTAGACCTAGCCA 60.027 50.000 17.26 0.00 41.83 4.75
3575 3755 2.614983 CTCAGTCGACTTAGACCTAGCC 59.385 54.545 19.88 0.00 41.83 3.93
3576 3756 3.310501 GTCTCAGTCGACTTAGACCTAGC 59.689 52.174 34.68 18.86 39.89 3.42
3577 3757 4.761975 AGTCTCAGTCGACTTAGACCTAG 58.238 47.826 38.01 18.93 44.30 3.02
3578 3758 4.822685 AGTCTCAGTCGACTTAGACCTA 57.177 45.455 38.01 16.15 44.30 3.08
3579 3759 3.706600 AGTCTCAGTCGACTTAGACCT 57.293 47.619 38.01 27.86 44.30 3.85
3586 3766 2.088423 CAGCCTAAGTCTCAGTCGACT 58.912 52.381 13.58 13.58 45.73 4.18
3587 3767 1.133407 CCAGCCTAAGTCTCAGTCGAC 59.867 57.143 7.70 7.70 0.00 4.20
3588 3768 1.271982 ACCAGCCTAAGTCTCAGTCGA 60.272 52.381 0.00 0.00 0.00 4.20
3589 3769 1.133407 GACCAGCCTAAGTCTCAGTCG 59.867 57.143 0.00 0.00 0.00 4.18
3590 3770 1.133407 CGACCAGCCTAAGTCTCAGTC 59.867 57.143 0.00 0.00 0.00 3.51
3591 3771 1.178276 CGACCAGCCTAAGTCTCAGT 58.822 55.000 0.00 0.00 0.00 3.41
3592 3772 1.178276 ACGACCAGCCTAAGTCTCAG 58.822 55.000 0.00 0.00 0.00 3.35
3593 3773 2.502142 TACGACCAGCCTAAGTCTCA 57.498 50.000 0.00 0.00 0.00 3.27
3594 3774 3.491104 CCATTACGACCAGCCTAAGTCTC 60.491 52.174 0.00 0.00 0.00 3.36
3595 3775 2.431057 CCATTACGACCAGCCTAAGTCT 59.569 50.000 0.00 0.00 0.00 3.24
3596 3776 2.483188 CCCATTACGACCAGCCTAAGTC 60.483 54.545 0.00 0.00 0.00 3.01
3597 3777 1.485066 CCCATTACGACCAGCCTAAGT 59.515 52.381 0.00 0.00 0.00 2.24
3598 3778 1.760613 TCCCATTACGACCAGCCTAAG 59.239 52.381 0.00 0.00 0.00 2.18
3599 3779 1.760613 CTCCCATTACGACCAGCCTAA 59.239 52.381 0.00 0.00 0.00 2.69
3600 3780 1.342674 ACTCCCATTACGACCAGCCTA 60.343 52.381 0.00 0.00 0.00 3.93
3601 3781 0.617820 ACTCCCATTACGACCAGCCT 60.618 55.000 0.00 0.00 0.00 4.58
3602 3782 1.117150 TACTCCCATTACGACCAGCC 58.883 55.000 0.00 0.00 0.00 4.85
3603 3783 2.364324 TGATACTCCCATTACGACCAGC 59.636 50.000 0.00 0.00 0.00 4.85
3604 3784 4.873746 ATGATACTCCCATTACGACCAG 57.126 45.455 0.00 0.00 0.00 4.00
3605 3785 6.734502 TTTATGATACTCCCATTACGACCA 57.265 37.500 0.00 0.00 0.00 4.02
3606 3786 9.886132 AATATTTATGATACTCCCATTACGACC 57.114 33.333 0.00 0.00 0.00 4.79
3621 3801 9.811995 GTTGGCATGCATGATAATATTTATGAT 57.188 29.630 30.64 0.00 0.00 2.45
3622 3802 9.027202 AGTTGGCATGCATGATAATATTTATGA 57.973 29.630 30.64 0.00 0.00 2.15
3625 3805 8.959548 CCTAGTTGGCATGCATGATAATATTTA 58.040 33.333 30.64 9.89 0.00 1.40
3626 3806 7.833786 CCTAGTTGGCATGCATGATAATATTT 58.166 34.615 30.64 9.29 0.00 1.40
3627 3807 7.400599 CCTAGTTGGCATGCATGATAATATT 57.599 36.000 30.64 14.24 0.00 1.28
3643 3823 4.463891 ACCTCATCAAATTTGCCTAGTTGG 59.536 41.667 13.54 10.47 39.35 3.77
3644 3824 5.649782 ACCTCATCAAATTTGCCTAGTTG 57.350 39.130 13.54 4.49 0.00 3.16
3645 3825 5.358160 GCTACCTCATCAAATTTGCCTAGTT 59.642 40.000 13.54 1.76 0.00 2.24
3646 3826 4.884164 GCTACCTCATCAAATTTGCCTAGT 59.116 41.667 13.54 9.08 0.00 2.57
3647 3827 4.883585 TGCTACCTCATCAAATTTGCCTAG 59.116 41.667 13.54 9.36 0.00 3.02
3648 3828 4.854173 TGCTACCTCATCAAATTTGCCTA 58.146 39.130 13.54 0.00 0.00 3.93
3649 3829 3.700538 TGCTACCTCATCAAATTTGCCT 58.299 40.909 13.54 0.38 0.00 4.75
3650 3830 4.660789 ATGCTACCTCATCAAATTTGCC 57.339 40.909 13.54 0.00 0.00 4.52
3651 3831 6.624352 TCTATGCTACCTCATCAAATTTGC 57.376 37.500 13.54 0.00 0.00 3.68
3668 3848 9.727627 CCACTCTTTCTTCATTTATTTCTATGC 57.272 33.333 0.00 0.00 0.00 3.14
3678 3858 9.660180 GATACTTACTCCACTCTTTCTTCATTT 57.340 33.333 0.00 0.00 0.00 2.32
3679 3859 8.816894 TGATACTTACTCCACTCTTTCTTCATT 58.183 33.333 0.00 0.00 0.00 2.57
3680 3860 8.367660 TGATACTTACTCCACTCTTTCTTCAT 57.632 34.615 0.00 0.00 0.00 2.57
3681 3861 7.776618 TGATACTTACTCCACTCTTTCTTCA 57.223 36.000 0.00 0.00 0.00 3.02
3682 3862 8.254508 ACATGATACTTACTCCACTCTTTCTTC 58.745 37.037 0.00 0.00 0.00 2.87
3683 3863 8.140112 ACATGATACTTACTCCACTCTTTCTT 57.860 34.615 0.00 0.00 0.00 2.52
3684 3864 7.397476 TGACATGATACTTACTCCACTCTTTCT 59.603 37.037 0.00 0.00 0.00 2.52
3685 3865 7.548097 TGACATGATACTTACTCCACTCTTTC 58.452 38.462 0.00 0.00 0.00 2.62
3686 3866 7.482169 TGACATGATACTTACTCCACTCTTT 57.518 36.000 0.00 0.00 0.00 2.52
3687 3867 7.343057 TCATGACATGATACTTACTCCACTCTT 59.657 37.037 14.24 0.00 33.59 2.85
3688 3868 6.836007 TCATGACATGATACTTACTCCACTCT 59.164 38.462 14.24 0.00 33.59 3.24
3689 3869 7.043961 TCATGACATGATACTTACTCCACTC 57.956 40.000 14.24 0.00 33.59 3.51
3712 3892 9.755064 GCACAACATTTAATATGATACGGTATC 57.245 33.333 18.97 18.97 35.74 2.24
3713 3893 9.502091 AGCACAACATTTAATATGATACGGTAT 57.498 29.630 0.00 0.00 0.00 2.73
3714 3894 8.896320 AGCACAACATTTAATATGATACGGTA 57.104 30.769 0.00 0.00 0.00 4.02
3715 3895 7.801716 AGCACAACATTTAATATGATACGGT 57.198 32.000 0.00 0.00 0.00 4.83
3726 3906 9.786105 CATGACACATATTAGCACAACATTTAA 57.214 29.630 0.00 0.00 0.00 1.52
3727 3907 7.914871 GCATGACACATATTAGCACAACATTTA 59.085 33.333 0.00 0.00 0.00 1.40
3728 3908 6.753279 GCATGACACATATTAGCACAACATTT 59.247 34.615 0.00 0.00 0.00 2.32
3729 3909 6.127675 TGCATGACACATATTAGCACAACATT 60.128 34.615 0.00 0.00 0.00 2.71
3730 3910 5.357596 TGCATGACACATATTAGCACAACAT 59.642 36.000 0.00 0.00 0.00 2.71
3731 3911 4.699257 TGCATGACACATATTAGCACAACA 59.301 37.500 0.00 0.00 0.00 3.33
3732 3912 5.233957 TGCATGACACATATTAGCACAAC 57.766 39.130 0.00 0.00 0.00 3.32
3733 3913 5.589452 TCATGCATGACACATATTAGCACAA 59.411 36.000 25.42 0.00 32.92 3.33
3734 3914 5.124645 TCATGCATGACACATATTAGCACA 58.875 37.500 25.42 0.00 32.92 4.57
3735 3915 5.678132 TCATGCATGACACATATTAGCAC 57.322 39.130 25.42 0.00 32.92 4.40
3748 3928 5.878332 ACTTCGTTTATTGTCATGCATGA 57.122 34.783 25.42 25.42 0.00 3.07
3749 3929 8.124823 AGATAACTTCGTTTATTGTCATGCATG 58.875 33.333 21.07 21.07 0.00 4.06
3750 3930 8.213518 AGATAACTTCGTTTATTGTCATGCAT 57.786 30.769 0.00 0.00 0.00 3.96
3751 3931 7.609760 AGATAACTTCGTTTATTGTCATGCA 57.390 32.000 0.00 0.00 0.00 3.96
3752 3932 9.586150 CATAGATAACTTCGTTTATTGTCATGC 57.414 33.333 0.00 0.00 0.00 4.06
3776 3956 9.645059 GTGCATAGTATCATGTGTTAGTATCAT 57.355 33.333 0.00 0.00 0.00 2.45
3777 3957 8.860088 AGTGCATAGTATCATGTGTTAGTATCA 58.140 33.333 0.00 0.00 0.00 2.15
3780 3960 9.127277 TGTAGTGCATAGTATCATGTGTTAGTA 57.873 33.333 0.00 0.00 0.00 1.82
3781 3961 8.007405 TGTAGTGCATAGTATCATGTGTTAGT 57.993 34.615 0.00 0.00 0.00 2.24
3782 3962 8.352942 TCTGTAGTGCATAGTATCATGTGTTAG 58.647 37.037 0.00 0.00 0.00 2.34
3783 3963 8.232913 TCTGTAGTGCATAGTATCATGTGTTA 57.767 34.615 0.00 0.00 0.00 2.41
3784 3964 7.112452 TCTGTAGTGCATAGTATCATGTGTT 57.888 36.000 0.00 0.00 0.00 3.32
3785 3965 6.715347 TCTGTAGTGCATAGTATCATGTGT 57.285 37.500 0.00 0.00 0.00 3.72
3786 3966 7.150640 ACATCTGTAGTGCATAGTATCATGTG 58.849 38.462 0.00 0.00 0.00 3.21
3787 3967 7.295322 ACATCTGTAGTGCATAGTATCATGT 57.705 36.000 0.00 0.00 0.00 3.21
3788 3968 8.908172 CTACATCTGTAGTGCATAGTATCATG 57.092 38.462 8.85 0.00 42.22 3.07
3803 3983 8.270030 ACACTAGTACCATGTACTACATCTGTA 58.730 37.037 9.46 2.25 36.53 2.74
3804 3984 7.117397 ACACTAGTACCATGTACTACATCTGT 58.883 38.462 9.46 3.10 36.53 3.41
3805 3985 7.569639 ACACTAGTACCATGTACTACATCTG 57.430 40.000 9.46 3.90 36.53 2.90
3806 3986 9.286170 CATACACTAGTACCATGTACTACATCT 57.714 37.037 9.46 0.00 32.58 2.90
3807 3987 9.281371 TCATACACTAGTACCATGTACTACATC 57.719 37.037 9.46 0.00 32.58 3.06
3808 3988 9.809395 ATCATACACTAGTACCATGTACTACAT 57.191 33.333 9.46 0.00 34.20 2.29
3812 3992 9.504708 GAGTATCATACACTAGTACCATGTACT 57.495 37.037 11.30 11.30 31.88 2.73
3813 3993 9.281371 TGAGTATCATACACTAGTACCATGTAC 57.719 37.037 0.00 5.48 42.56 2.90
3832 4012 3.381949 GCTGGTCGTAATGGTGAGTATC 58.618 50.000 0.00 0.00 0.00 2.24
3833 4013 2.102588 GGCTGGTCGTAATGGTGAGTAT 59.897 50.000 0.00 0.00 0.00 2.12
3834 4014 1.479323 GGCTGGTCGTAATGGTGAGTA 59.521 52.381 0.00 0.00 0.00 2.59
3835 4015 0.249398 GGCTGGTCGTAATGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
3836 4016 0.537188 AGGCTGGTCGTAATGGTGAG 59.463 55.000 0.00 0.00 0.00 3.51
3837 4017 0.981183 AAGGCTGGTCGTAATGGTGA 59.019 50.000 0.00 0.00 0.00 4.02
3838 4018 2.676342 GTTAAGGCTGGTCGTAATGGTG 59.324 50.000 0.00 0.00 0.00 4.17
3839 4019 2.355412 GGTTAAGGCTGGTCGTAATGGT 60.355 50.000 0.00 0.00 0.00 3.55
3840 4020 2.285977 GGTTAAGGCTGGTCGTAATGG 58.714 52.381 0.00 0.00 0.00 3.16
3841 4021 2.980568 TGGTTAAGGCTGGTCGTAATG 58.019 47.619 0.00 0.00 0.00 1.90
3842 4022 3.008704 ACTTGGTTAAGGCTGGTCGTAAT 59.991 43.478 0.00 0.00 38.26 1.89
3843 4023 2.369532 ACTTGGTTAAGGCTGGTCGTAA 59.630 45.455 0.00 0.00 38.26 3.18
3844 4024 1.972795 ACTTGGTTAAGGCTGGTCGTA 59.027 47.619 0.00 0.00 38.26 3.43
3845 4025 0.763035 ACTTGGTTAAGGCTGGTCGT 59.237 50.000 0.00 0.00 38.26 4.34
3846 4026 1.439679 GACTTGGTTAAGGCTGGTCG 58.560 55.000 0.00 0.00 38.97 4.79
3852 4032 3.402628 TGACTGAGACTTGGTTAAGGC 57.597 47.619 0.00 0.00 42.59 4.35
3853 4033 3.748568 GCTTGACTGAGACTTGGTTAAGG 59.251 47.826 11.96 0.00 38.26 2.69
3854 4034 3.430218 CGCTTGACTGAGACTTGGTTAAG 59.570 47.826 0.00 8.10 39.86 1.85
3855 4035 3.069016 TCGCTTGACTGAGACTTGGTTAA 59.931 43.478 0.00 0.00 0.00 2.01
3856 4036 2.626266 TCGCTTGACTGAGACTTGGTTA 59.374 45.455 0.00 0.00 0.00 2.85
3857 4037 1.412710 TCGCTTGACTGAGACTTGGTT 59.587 47.619 0.00 0.00 0.00 3.67
3858 4038 1.040646 TCGCTTGACTGAGACTTGGT 58.959 50.000 0.00 0.00 0.00 3.67
3859 4039 2.376808 ATCGCTTGACTGAGACTTGG 57.623 50.000 0.00 0.00 0.00 3.61
3860 4040 5.826586 ACTATATCGCTTGACTGAGACTTG 58.173 41.667 0.00 0.00 0.00 3.16
3861 4041 7.229707 ACATACTATATCGCTTGACTGAGACTT 59.770 37.037 0.00 0.00 0.00 3.01
3862 4042 6.712998 ACATACTATATCGCTTGACTGAGACT 59.287 38.462 0.00 0.00 0.00 3.24
3863 4043 6.904498 ACATACTATATCGCTTGACTGAGAC 58.096 40.000 0.00 0.00 0.00 3.36
3864 4044 8.617290 TTACATACTATATCGCTTGACTGAGA 57.383 34.615 0.00 0.00 0.00 3.27
3865 4045 8.722394 TCTTACATACTATATCGCTTGACTGAG 58.278 37.037 0.00 0.00 0.00 3.35
3866 4046 8.617290 TCTTACATACTATATCGCTTGACTGA 57.383 34.615 0.00 0.00 0.00 3.41
3867 4047 9.335891 CTTCTTACATACTATATCGCTTGACTG 57.664 37.037 0.00 0.00 0.00 3.51
3868 4048 9.286170 TCTTCTTACATACTATATCGCTTGACT 57.714 33.333 0.00 0.00 0.00 3.41
3869 4049 9.894783 TTCTTCTTACATACTATATCGCTTGAC 57.105 33.333 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.