>input_sequence_41329
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---------ATGGCTCCTCATGCTCTCTTGTCTCCGGAGTCTCGCAACCGCGCTGCCATCCTGCCACTGCTACGCATACT
GTGAGTTGATCGATCGAGGAGAAAAGATGGCATGCTTTCTTGGTTAAGTACGTCTGGATTTTGGACTCACGATCATGGTG
CATATACGTACGTTGTTGTTTTGCAGAGAAGATCATGGCGCAGATGCGCGGAAGACCAGGCCGGCGGCCGCCACCTCCAA
GGCCGGCAGGAAGAAGAA---GGTGCTGGTGCTGACCGTGGTCGTGTCCGTCGTGCTCATGTGCGCCCTCCTCAAGACCA
GAACCCTAGACGGCCGGATATTACTCCGTCATCGTCCAGCTCCTACGATTAGTGTTCCACGGCCCCCCTACGGCGCGCAC
CGGCGCGTCCGGTGGGACAGCGTCACCGCCTCCCTGGTGGCGGCGCAGGCGGGGTCGGTGGCGCTGCTCAACTTCAGTCC
GGCGGAGGTGAAGCGGTGGAGGAAGCTGCAGCCACTCCACAC---GACAGTCCGGACGGTGCGGTTGCAGGCCGTGGACA
GCACCGTCACCTGGGCCGCCCTCTACCCGGAGTGGATCGACGAGGACGGTAACGGCACCAGCAGCGGCAGCTGCCCCTCA
CTCCCGGACCCCGAGGATCAAGGAGGCCGGCGCTTCGACCTCGTCGCCGTCAACCTCCCGTGCCGCAGCCGTAACGATAG
CGGCCGCTGGTCCAGGGACGTGGCCAGGCTCCATCTCCAGCTCTCCGCCGCCAAGCTCGCCGTCTCCGTCCAGTCGTCGC
ATGTCCTCGTCGTCTCTGACTGTCTCCCACTCCCCAACCTCTTCCCATGCAAGCACCTCTTCCACCAACACGACCACGCC
CGGCTCTACAGGGCTCACGCTGCCTACCTCCGCCCCCGCACTCGCCTTCCCATTGGCTCATGCGACCTCGCTCTACGTCT
TCCGACGATTCCTATGAAGCCGCTTACGGTGCTCAGGCGGCGGCGGGAGGCGTACGCGACGGTGCTGCACTCGTCGGACG
CTTACGTGTGCGGCGCCATCGCGGTGGCGCAGAGCATCCGGCAGTCGGGCTCCACCAGGGACCTGGTG------------
---------------------------GCGCTGGTGGACTACGGCAGCATCGGCGCGGAGCAGCGCGCCGGCCTGGCGGC
AGCGGGGTGGCAGGTGCGCGCCATGGCCGGCCGCATCCGAAACCCGCGCGCGGTGCCCGGCACGTACAACGAGTGGAACT
ACAGCAAGCTCCGCCTCTGGCAGCAGCTCACCGACTACCGCAGGGTCGTGTTCGTGGACGCCGACCAGCTCGTGCTGCGC
AACATCGACTTCCTCTTCGACGCCCCGGAGGTGAGCGCCACCGGGAACAGCCGGACGCTCTTCAACTCCGGCGTCATGGT
GCTGGAGCCCTGCAACTGCACGTTCGACATGCTCATGGCGCGCGTCCGCGACG---------TCCGGTCCTACAACGGCG
GCGACCAGGGGTTCCTCAACGAGGTCTTCACGTGGTGGCACCGCCTGCCGCGCACCGTCAACGTCCTAAAGTACTACCA-
-CCAACAGGGCCATGCTGCTAGTGCTCCTGCTGCCTCGGC----GGCGCCGCAGCCGGAGCCGTACCTGCTGCATTACCT
GGGCATCAAGCCGTGGCTGTGCTTCCGCGACTACGACTGCAACTGGAACTTGCCGTCGCTGCGCCAGTTCGCCAACGACG
AGGCGCACGCGCGGTGGTGGGCGGTGCACGACCGGATCAAACCGAGGGAGCTCGCCACCAGGTTCTGCGCGTTGCCGAAG
AGTCAGAGATCGGCGCTGCAGTATGACCGGAGGCAGGCGGAGAAGGCCAACGCCACCGACATGCACTGGAGCCGTCCGAT
CACTGACCCAAGGAACACCCAACAACTCTTGTTGCCAATGCCACCCACCGCATGA-------------------------
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>chr3B_1_TraesCS3B01G414000
CTATAGCGCGGCTGTCGGAGATGCTCTTATATTAACTTAAAGAGAGAGTAGTTGGCGAATTGAAGTTGGATATGAACTAA
-AGATGTAACACGCGTGCAGTCACCGATCCACGTCAAATAAACCGAACGATCTCTCACGGTGCGATAATCAATTAGGTGT
CACAATCAGACAAATATGGTCGATGCCATGGTGCTACAGCTAGCTAGACAGGTGAGGC-----GAGGTGAACAATACAAG
ATTTGTTACCAAACCTACAATTCCCATCTGCACCAAACCTGAAAGAAAAA-GTACGTACCACATCCACTGGTCTACATGG
ATGGAGCAAGACCTCCTCAACGTTAATTGCATAGCTTGTACT------AGATAGATATACAAGTACGCAGCATCCATTGA
CATAGTCTCTCTTCTCCCTCCTCTTCTGCACTAGTGCCAACTGCCACAACCAGCTGGCCTTGGCCAAGCAAATCAAATCA
TGTACTTAATA----TACTATGCATCAAGACAAGCTAGCACTTTTTCAGAAAAGAAAAAAAGAAGCAAACCACAAAGCAC
AGT-----TTTTGTAAGCCGGGGAGGAACTTGGAAAGACCGATGTTAGTCAGAGCTCTAGCTCGCCTGAATGTAGCCAAA
TGGCTGCCATTTAGTAGTTAATTATCCGGCCAGGCCTATCGGG-TATCGAAGTCAGGATTAATCTCCAAATGTCGTGAGT
TAGACCACGGCCTACCTATCACT--TGTAATCACATGATTAATCACCTCCAACTTAGTCAAAGACATGAGACAAACTGAA
AACCACGGTTGTACGTGGAGGCATCGATCG------ATACATATATAGTGTGGCTTGAGAGATAGAGCGAAGCAAGG---
-GCTTAACCATTCCCCAGCCAGCCAGGGCCAGGCTGCATGCACGTACGCTATACCTATGCAGATCGGATGAGATCGTCGA
CCAGCAGCTAGCTACC----CCGCCGGCCCGCGATCGTGTGTGAAGAACTAAGCAGG----------GCCGAGTGATCGG
AAGGAAAAGATGGCTCCTCATGCTCTCTTGTCTCCGGAGTCTCGCAACCGCGCTGCCATCCTGCCACTGCTACGCATACT
GTGAGTTGATCGATCGAGGAGAAAAGATGGCATGCTTTCTTGGTTAAGTACGTCTGGATTTTGGACTCACGATCATGGTG
CATATACGTACGTTGTTGTTTTGCAGAGAAGATCATGGCGCAGATGCGCGGAAGACCAGGCCGGCGGCCGCCACCTCCAA
GGCCGGCAGGAAGAAGAA---GGTGCTGGTGCTGACCGTGGTCGTGTCCGTCGTGCTCATGTGCGCCCTCCTCAAGACCA
GAACCCTAGACGGCCGGATATTACTCCGTCATCGTCCAGCTCCTACGATTAGTGTTCCACGGCCCCCCTACGGCGCGCAC
CGGCGCGTCCGGTGGGACAGCGTCACCGCCTCCCTGGTGGCGGCGCAGGCGGGGTCGGTGGCGCTGCTCAACTTCAGTCC
GGCGGAGGTGAAGCGGTGGAGGAAGCTGCAGCCACTCCACAC---GACAGTCCGGACGGTGCGGTTGCAGGCCGTGGACA
GCACCGTCACCTGGGCCGCCCTCTACCCGGAGTGGATCGACGAGGACGGTAACGGCACCAGCAGCGGCAGCTGCCCCTCA
CTCCCGGACCCCGAGGATCAAGGAGGCCGGCGCTTCGACCTCGTCGCCGTCAACCTCCCGTGCCGCAGCCGTAACGATAG
CGGCCGCTGGTCCAGGGACGTGGCCAGGCTCCATCTCCAGCTCTCCGCCGCCAAGCTCGCCGTCTCCGTCCAGTCGTCGC
ATGTCCTCGTCGTCTCTGACTGTCTCCCACTCCCCAACCTCTTCCCATGCAAGCACCTCTTCCACCAACACGACCACGCC
CGGCTCTACAGGGCTCACGCTGCCTACCTCCGCCCCCGCACTCGCCTTCCCATTGGCTCATGCGACCTCGCTCTACGTCT
TCCGACGATTCCTATGAAGCCGCTTACGGTGCTCAGGCGGCGGCGGGAGGCGTACGCGACGGTGCTGCACTCGTCGGACG
CTTACGTGTGCGGCGCCATCGCGGTGGCGCAGAGCATCCGGCAGTCGGGCTCCACCAGGGACCTGGTG------------
---------------------------GCGCTGGTGGACTACGGCAGCATCGGCGCGGAGCAGCGCGCCGGCCTGGCGGC
AGCGGGGTGGCAGGTGCGCGCCATGGCCGGCCGCATCCGAAACCCGCGCGCGGTGCCCGGCACGTACAACGAGTGGAACT
ACAGCAAGCTCCGCCTCTGGCAGCAGCTCACCGACTACCGCAGGGTCGTGTTCGTGGACGCCGACCAGCTCGTGCTGCGC
AACATCGACTTCCTCTTCGACGCCCCGGAGGTGAGCGCCACCGGGAACAGCCGGACGCTCTTCAACTCCGGCGTCATGGT
GCTGGAGCCCTGCAACTGCACGTTCGACATGCTCATGGCGCGCGTCCGCGACG---------TCCGGTCCTACAACGGCG
GCGACCAGGGGTTCCTCAACGAGGTCTTCACGTGGTGGCACCGCCTGCCGCGCACCGTCAACGTCCTAAAGTACTACCA-
-CCAACAGGGCCATGCTGCTAGTGCTCCTGCTGCCTCGGC----GGCGCCGCAGCCGGAGCCGTACCTGCTGCATTACCT
GGGCATCAAGCCGTGGCTGTGCTTCCGCGACTACGACTGCAACTGGAACTTGCCGTCGCTGCGCCAGTTCGCCAACGACG
AGGCGCACGCGCGGTGGTGGGCGGTGCACGACCGGATCAAACCGAGGGAGCTCGCCACCAGGTTCTGCGCGTTGCCGAAG
AGTCAGAGATCGGCGCTGCAGTATGACCGGAGGCAGGCGGAGAAGGCCAACGCCACCGACATGCACTGGAGCCGTCCGAT
CACTGACCCAAGGAACACCCAACAACTCTTGTTGCCAATGCCACCCACCGCATGATTCTATCCGC-TTGCTTGTACCTAT
GGTGTTTTTGTAAATTTGCT---------------------------------------------------------TTT
AGAAAAATCTGACGTCGGTCGATTTTCCTAGCCGTTGGATTGCAATCATCCAATGGCCGAGCGTCTCGTTCTACTCCCAA
CCCCTCTCTTCTTCTTCCTGAGCAC------------CCTCCTCTTCCGCCCGCTCACCGCTGGCCACAGCATCCCTGTC
TTAGGCGAGGTCCTATCCCGGTCTGGCTGGGACGCCGTGGCCAGCCTATTGTCTTTGTCTCACCCTCAGAGCTCCGCATG
TACCTCACTTAGGCCTCCTTTGGTTCATAAGATAGAAATGTTATAGGAATAGTAAAATTATAGGAAGTGAAACGACATGC
ATCTCAATTCCTATAGAGAAAGAGATGTCATTTGATGCATATGATAGGAATTTTTCCATTGAGTCTTAGCTAATGTTCTT
TTCCTCTAAAATATGAAGGATTGATTCCTATCCTACATAGGAATAGGAATCCATTCTTACAAACCAAAGGGCTTCAAAGG
AAATTTTCCTATACAAATCTTATCCTATGAAAATCCTATGAAATTCCTACAAACCAAAGGAGCCCTTATTCTTCCAGAAA
ACCGACTAATGTCACTCGCGTTTTCACGCGACTTACAAATAACGAATACCCATTTATAATTCTACGAAGGGTGTGGCTAG
GTCTAAGTCGACTGAGACTTAGGCTGGTCGTAATGGGAGTATCATAAATATTATCATGCATGCCAACTAGGCAAATTTGA
TGAGGTAGCATAGAAATAAATGAAGAAAGAGTGGAGTAAGTATCATGTCATGATACCGTATCATATTAAATGTTGTGCTA
ATATGTGTCATGCATGACAATAAACGAAGTTATCTATGATACTAACACATGATACTATGCACTACAGATGTAGTACATGG
TACTAGTGTATGATACTCACCATTACGACCAGCCTTAACCAAGTCTCAGTCAAGCGATATAGTATGTAAGAAGAAAAGAA
AAACT
>chr3D_25
------------------------TCTTATATTAATTTAGAGAGAGAGTAGTTGGGGTATTGAAGTTGGATGTGAACTAA
-AGATGTAACACGCGCGCAGTCACCGATCCACGTCAAATAAACCGAACTATCTGTTGCCATGCGATAATCAATTAGGAGT
CACAATCATACAATTATGATCGATGCCATGGTGCTAGAGCTAGCTAGACAGGC-----GAGGTGAGGTGAACAATACGAG
ATTTGTTACCAAACCTACAATTCCCATCTGCACCAAACCTGGAAG-AAAA-GTACGTACCACATCCACTGGTCTACATGG
ATGGAGCAAGACCTCCTCAATGTTAGTTGCATAGCTTGTACTACTACTAGATAGATATACAAGTACGCAGTATCCATTGA
CATAGTCTCTCTTCTCCCTCCTCTTCTGCACTAGTGCCAACTGCCACAACCAGCTGGCCTTGACCAAGCAAATCAAATCA
TGTTCTTACTA----TACTATGCATCAAGACAAGCTAGCACTTTTCAGAAAAG--AAAAAAGAAGCGAACTACAAAGCAC
AGT-----TTTTTTAAGCCGGAGAAGAACTTGGAAAGATCGATGTTAGTCGGAGCTCTAGCTCGCCTGAATGTAGCCAAA
TGGCTGCCATTTAGTAGTTAATTATCCGGCCAGGCCTATCGAGACATCGAGGTCAGGATTAATCTCCAAATGTCGTGAGT
TAGACCACGGCCTACCTATCACTCTTGTAATCACATGATTAATCACCTCCAACTTAGTCAAAGACATGAGACAAACTGAA
AACCACGGTTGTACGTGGAGGCATCGATGG------ATACATATATAGTGTGGCTTGAGAGATAGAGCGCAGCAAAGGCT
AGCTTAACCATTC-CCAGCCAGCCAGGGCCAGGCTGCATGCACGTACGCTATACCTATGCAGATCGGATGAGATCGTCGA
CCAGCAGCTAGCTAGCTACTCCGCCGGCCCGCGATCGTGCGTGGAGAACTAAGCAGGGCATGCACGGGCCGAGTGATCGG
AAGGAAAAGATGGCTCCTCATGCTCTCCTGTCTCCGGAGTCCCGCAGCCGCGCTGCCATCCTGCCACTGCTACGCATACT
GTGAGTTGATCGATCGAGGAGAAAAGATGGCACGCTTTCTTGGTTAAGTACGTCTGGATTTTGGACTCACGATCATGGTG
CATGTACGTACGTTGTTGTTTTGCAGAGAAGATCATGGCGCTGAGGCGCGGAAGAGCCGGCCGGCGGCGACCGCCTCCAA
GGCCGGCAGGAAGAAGAA---GGTGCTGGTGCTGACCGCGGTGGTGTCCGTCGTGCTCATGTTTGCCCTCCTCAAGACCA
GAACCCTCGACGGCCGGGTATTACTCCGTCATCGTCCAGCTACTGTGATTAGTGTTCCACGGCCCCCCTACGCCGCGCAC
CGGCGCGTCCAGTGGGACAGCGTCACTGCCTCCCTGGTGGCGGCGCAGGCGGGGTCGGTGGCGCTGCTCAACTTCAGCCC
GGCGGAGGTGAAGCGGTGGAGGAAGCTGCAGCCACTCCACAC---GACAGTCCGAGCGGTGCGGTTGCAGCCCGTGGACA
GCGCCGTCACCTGGGCCGCCCTCTACCCGGAGTGGATCGACGAGGACGGTAACGGCACCAACAGCGGCAGCTGCCCCTCA
CTCCCAGACCCCGAGGATCAAGGAGGCCAGCGCTTCGACCTCGTCGCCGTCAACCTCCCCTGCCGCAGCCGTAACGATAG
CGGCCGCTGGTCCAGGGACGTGGCCAGGCTCCATCTCCAGCTCTCCGCCGCCAAGCTCGCCGTCTCCGTCCAGTCGTCGC
ATGTCCTCGTCGTCTCTGATTGCCTCCCACTCCCCAACCTCTTCCCATGCAAGCACCTCTTCCACCAACACGGCCACGCC
CGGCTCTACAGGGCTCACGCCGCCTACCTCCGCCCCCGCACCCGCCTCCCCGTCGGCTCATGCGACCTCGCTCTACGTCT
TCCGACGATTCCTATGAAGCCGCTTACGGTGCTCAGGCGGCGGCGGGAGGCGTACGCGACGGTGCTGCACTCGTCGGACG
CCTACGTGTGCGGCGCCATCGCGGTGGCGCAGAGCATCCGTCAGTCGGGCTCCACCAGGGACCTGGTG------------
---------------------------GCGCTGGTGGACTACGGCAGCGTCGGCGCCGAGCAGCGCGCCGGCCTGGCTGC
GGCCGGGTGGCAGGTGCGCACCATGGACGGCCGCATCCGCAACCCGCGCGCCGTGCCCGGCACGTACAACGAGTGGAACT
ACAGCAAGCTCCGCCTGTGGCAGCAGCTCACCGACTACCGCAGGGTCGTGTTCGTGGACGCCGACCAGCTCGTGCTGCGA
AACATCGACTTCCTCTTCGACGCCCCGGAGGTGAGCGCCACCGGGAACAGCCGGACGCTCTTCAACTCCGGCGTCATGGT
GCTGGAGCCCTGCAACTGCACGTTCGACATGCTCATGGCGCGCGTCCGCGACG---------TCCGGTCGTACAACGGCG
GCGATCAGGGGTTCCTCAACGAGGTCTTCACGTGGTGGCACCGCCTGCCGCGCACCGTCAACGTCCTAAAGTACTACCA-
-CCAACAGGGCCATGC------TGCTGCTGCTGCCTCGGC----GCCGCCGTCGCCGGAGCCGTACCTGCTGCACTACCT
GGGCATCAAGCCGTGGCTGTGCTTCCGCGACTACGACTGCAACTGGAACGTGCCGTCGCTGCGCCAGTTCGCCAACGACG
AGGCGCACGCGCGGTGGTGGGCCGTGCACGACAGGATCAAGCCGGGGGAGCTCGCCGCTAGGTTCTGCGCGTTGCCGAAG
AGTCAGAGGTCGTCGCTGCAGTATGAGCGGAGGCAGGCGGAGAAGGCCAACGCCACCGACATGCACTGGAGCCGTCCGAT
CACTGACCCAAGGAACACCCAACAACTCTTGTTGCCAATGCCACCCACCGCATGATTCTACCCGC-TTGCTTGTACCTAT
GGTGTTTTTGTAAATTTGATTGATATTTCTACGGATATTTCTAATCATTTCACAGCGGGTGAATATTTGTGAATTGCTTT
A---AAATCTGACGCCAATCGATTTTCCTAGCCGTTGGATTGCAATCATCCAATGGCCCAGCTCCCGCTCTTGCTCCCAA
CCCCTCTCTCCTTCTTGGTGAGCACCC---TCCTCGTCCTCCTCTTCCGGACGCTCACCGCTGGCCACGACATCCCTGTC
TTGGGCGAGGTCCTATCCCGG---------GACGCCGTGGCCAGCCAATTATATTTGTCTCACCCTCAGAGCTCCGTGTG
AACCTCACTT----------------------------------------------------------------------
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>chr3A_25
------------------------TCTTATATTAATTTACAGAGAGAGTAGTTGGCGAATTGAAGTTGGATGTGAACTAA
AAGATGTAACACGCGTGCAGTCACCGATCCACGTCAAATAAACCGAACTATCTGTCACGGTGCGATAATCAATTAGGAGT
CACAATCATACAAATATGACCGTTGCCATGGTGCTACAGCTAGCTAGACAGGTGAGGTGAGGTGAGGTGAACAATACGAG
ATTTGTTACCAAACCTACAATTCCCATCTGCACCAAACCTGGAAG-AAAACGTACGTACCACATGCACTGGTCTACATGG
ATGGAGCAAGACCTCCTCAATGCTAGTTGCATAGCTTGTACTACTACTAGATAGATATACAAGTACGCAGTATCCATTGA
CATAGTCTCTCTTCTCCCTCCTCTTATGCACTAGTGCCAACTGCCACAATCAGCTGGCCTTGACCAAGCAAAGCAAAGCA
ATGCAAATCATGTACTACTATGCCTCAAGACAAGCTAGCACTTTTTCAGAAAAGA-AAAAAGAAGCAAACTACTACAAAG
CGCAGGTATTTTTAAAGCCGTGGAGGAACTTGGAAAGATCGATGTTAGTCGGAGCGCTAGCTCGCCTGAATGTAGCCAAA
TGGCTGCCATTTAGTAGTTAATTATCCGGCCAGGCCTATCGGGATATCGAGGTCAGGATTAATCTCCAAATGTCGTGAGT
TAGACCACGGCCCACCTATCACT--TGTAATCACATGATTAATCACCTCCAACTTAGTCAAAGACACGAGACAAACTGAA
AACCACGGTTGTACGTGGAGGCATCGATGGATACATATACATATACAGTGTAGCTTGAGAGATAGAGCCAAGCAAAG---
-GCTTAACCATTCCCAGCCAGCCA-----------------------------------------GGATGAGATCGTCGA
T---CAGCTAGCTAGCTACTCCGCCGGCCCGCGATCGTGCGTGGAGAACTAAGCAGGGCGTGCAAGGGCCGAGTGATCGG
AAGGAAAAGATGGCCCCTCACGCTCTCTTGTCTCCGGAGTCCCGCAGCCGCGCTGCCATCCTGCCACTGCTACGCATACT
GTGAGTTGATCGATCGAGGAGAGGAGATGGCACGCTTTCTTGGTCAAGTACGTCTGGATTTTGGACTCACGATCATGGTG
CATGTACGTACGTTATTGTTTTGCAGAGAATATCATGGCGCGGATGCGCGGAAGAGCCGGCCGGCGGCGACCTCCTCCAA
GGCCGGCAGGAAGAAGGTGCTGGTGCTGGTGCTGACCGTGGTGGTGTCCGTCGTGCTCATGTTCGGCCTCCTCAAGACCA
GAACCCTCGACGGCCGGATATTACTCCGTCATCGTCCAGCTCCTGTGATTAGTGTTCCACGGCCCCCCTACGCCGCGCAC
CGGCGCGTCCGGTGGGACAGCGTCACCGCCTCCCTGGTGGCGGCGCAGGCGGGGTCGGTGGCGCTGCTCAACTTCAGCCC
GGCGGAGGTGAAGCGGTGGAGGGAGCTGCGGCTACCCGGAGCAGTGACAGTCCGAGCGGTGCGGTTGCAGGCCGTGGACA
GCGCCGTCACGTGGGCCGCCCTCTACCCGGAGTGGATCGACGAGGACGGTAACGGCACCAGCAGCGGCAGCTGCCCCTCA
CTCCCAGACCCCGAAGATCAAGGAGGCCAGCGCTTCGACCTCGTCGCCGTCAACCTCCCCTGCCGCAACCGTAACGATAG
CGGCCGCTGGTCCAGGGACGTGGCCAGGCTCCATCTCCAGCTCTCCGCCGCCAAGCTCGCCGTCTCCGTCCACTCGTCAC
ACGTCCTCGTCGTCTCGGACTGCCTCCCACTCCCCAACCTCTTCCCATGCAAGCACCTCCTCCACCGACACGGCCACGCC
CGGCTCTACAGGGCTCACGCCGCCTACCTCCTCCCCCGCACCCGCCTCCCCGTCGGCTCATGCGACCTCGCCCTACGTCT
TCCGACGAGTCCTACGAAGCCGCCTACAGTGCTCAGGCGGAGGCGGGAGGCGTACGCGACGGTGCTGCACTCATCGGACG
CCTACGTGTGCGGCGCCATCGCGGTGGCGCAGAGCATCCGGCAGTCGGGCTCCACCAGGGACCTGGTG------------
---------------------------GCGCTGGTGGACTACGGCAGCGTCGGCGCGGAGCAGCGCGCCGGCCTGGCTGC
GGCCGGGTGGCAGGTGCGCGCCATGGACGGCCGCATCCGCAACCCGCGCGCCGTGCCCGGCACGTACAACGAGTGGAACT
ACAGCAAGCTCCGCCTGTGGCAGCAGCTCACCGACTACCGCAGGGTCGTGTTCGTGGACGCCGACCAGCTCGTGCTGCGC
AACATCGACTTCCTCTTCGACGCCCCGGAGGTGAGCGCCACCGGGAACAGCCGGACGCTCTTCAACTCGGGCGTCATGGT
GCTGGAGCCGTGCAACTGCACGTTCGACATGCTCATGGCGCGCGTCCGCGACG---------TCCGGTCGTACAACGGCG
GCGACCAGGGGTTCCTCAACGAGGTCTTCACGTGGTGGCACCGCCTGCCGCGCACCGTCAACGTCCTGAAGTACTACCA-
-CCAACAGGACCATGCTGCT------CCTGCTGCCTCGGC----GCCGCCGTCGCCGGAGCCGTACCTGCTGCACTACCT
GGGCATAAAGCCGTGGCTGTGCTTCCGGGACTACGACTGCAACTGGAACGTGCCGTCGCTGCGCCAGTTCGCCAACGACG
AGGCGCACGCACGGTGGTGGGCCGTGCACGACCGGATCAAGCCGAGGGAGCTCGCCGCCAGGTTCTGCGCGTTGCCGAAG
AGTCAGAGGTCGTCGCTGCAGTATGAGCGGAGGCAGGCGGAGAAGGCCAACGCCACCGACATGCACTGGAGCCGTCCGAT
CACTGACCCAAGGAACACCCAACAACTCTTGTTGCCAATGCCACCCACCGCTTGATTCTATCCGCTTTGCTTGTACCTAT
GGTGTTTTTGTAAATTCGATTGATATTTCTACGGATATTTCTAATCATTTCACAGCGGCTGAATATTTGTGAATTGCTTT
AGAAAAATCTGACGCCGATAGATTTTCCTAGCCGTTGGATTGCAATCATCCAATGGCCCAGCTCTCACTCTTCCTCCCAA
CTCCTCTCTTCTTCTTGGTGAGCACCCTCCTCCTCTTCATCCTCTTCCGGACGCTCACCTCTGGCCGCGACATCCCTGTC
TTGGGCGAGGTCCTATCCTGGTCTGGTTGGGACGCCGTGGCCAACCTATTGTATTTGTCTCACCCTCAGAGCTCCACGTG
AACCTCACTT----------------------------------------------------------------------
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>chr4B_1979
CAGCCA--------------------------------------------------------------------------
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---------------------------------------GCGGCGCGAGGCGTACGCGACGGTGCTACACTCGTCGGACA
GGTATCTATGCGGCGCCATCGTGCTGGCGCAGAGCATCCGGCGGTCGGGCTCCACCCGCGACATGGTCCTCCTCCACGAC
CACACCGTCTCCAAGCCGGCCCTCCGCGCGCTGGTCGCCGCCGGGTGGATCCCGCGCAGGATCCGG--------------
-------------------------------CGCATCCGCAACCCGCGCGCGGAGCGGGGCTCCTACAATGAGTACAACT
ACAGCAAGTTCCGGCTGTGGCAGC---TGACGGAGTACTTCCGCGTCGTCTTCATCGACGCCGACATCCTCGTCCTCCGC
TCCCTCGACGTGCTCTTCCGCTTCCCGCAGATCTCCGCCGTGGGCAATGACGGCTCCCTGTTCAACTCCGGGATCATGGT
GATCGAGCCGTCGGCGTGCACGTTCGA---------GGCGCTCGTCCGCGGGCGGCGCACCATCCGGTCCTACAACGGCG
GCGACCAGGGGTACCTGAACGAGGTGTTCGTGTGGTGGCACCGGCTGCCGCGCCGGGTGAACTACCTCAAGAACTTCTGG
GCCAACACGACCGGGGAGCGGGCGCTCAAGGAGCGGCTGTTCAGGGCGGAGCCGGCGGAGGTGTGGTCCATCCACTACCT
TGGGCTCAAGCCGTGGCGGTGCTACAGGGACTACGACTGCAACTGGAATATCGACGACCAGCGCGTGTACGCCAGCGACG
AGGCGCACCGGCGGTGGTGGCAGGTGTACGACCAGAT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr4D_1979
CAGCCA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------GCGGCGCGAGGCGTACGCGACGGTGCTGCACTCGTCGGACC
GGTACCTGTGCGGCGCCATCGTGCTGGCGCAGAGCATCCGGCGGTCGGGCTCCACCCGCGACATGGTCCTCCTCCACGAC
CACACCGTCTCCAAGCCGGCCCTCCGCGCGCTGGTCGCCGCCGGCTGGATCCCGCGCAGGATCCGG--------------
-------------------------------CGCATCCGCAACCCGCGCGCGGAGCGGGGCTCCTACAACGAGTACAACT
ACAGCAAGTTCCGGCTGTGGCAGC---TGACGGAGTACTTCCGCGTCGTCTTCATCGACGCCGACATCCTTGTCCTCCGC
TCCCTCGACGCGCTCTTCCGCTTCCCGCAGATCTCCGCCGTGGGCAACGACGGCTCCCTGTTCAACTCCGGGATCATGGT
GCTCGAGCCGTCCGCGTGCACGTTCGA---------GGCGCTCGTCCGCGGGCGGCGCACCATCCGGTCCTACAACGGCG
GCGACCAGGGGTACCTGAACGAGGTGTTCGTGTGGTGGCACCGACTGCCGCGC---------------------------
--------------------------------------------------------------------------------
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>chr4A_1985
--------------------------------------------------------------------------------
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---------------------------------------GCGGCGCGAGGCGTACGCGACGGTTCTGCACTCGTCCGACC
GATACCTGTGCGGCGCCATCGTGCTGGCGCAGAGCATCCGGCGGTCGGGCTCCACCCGCGACATGGTCCTCCTCCACGAC
CACACCGTCTCCAAGCCGGCCCTCCGCGCGCTGGTCGCCGCCGGCTGGATCCCGCGCAGGATCCGG--------------
-------------------------------CGCATCCGCAACCCGCGCGCGGAGCGGGGCTCCTACAACGAGTACAACT
ACAGCAAGTTCCGGCTGTGGCAGC---TGACGGAGTACTTCCGCGTCGTCTTCATCGACGCCGACATCCTCGTCCTCCGC
TCCCTCGACGCGCTCTTCCGCTTCCCGCAGATCTCCGCCGTGGGCAACGACGGCTCCCTCTTCAACTCGGGGATCATGGT
GCTCGAGCCGTCGGCGTGCACCTTCGA---------GGCGCTCGTCCGCGGGCGGCGCACCATCCGGTCCTACAACGGCG
GCGACCAGGGGTACCTGAACGAGGTGTTCGTGTGGTGGCACCGGCTGCCGCGCCGGGTGAACTACCTCAAGAACTTCTGG
GCCAACACCACCGGGGAGCGCGCGCTCAAGGAGCGGCTGTTCAGGGCGGAGCCGGCGGAGGTGTGGTCCATCCACTACCT
CGGGCTCAAGCCCTGGCGGTGCTACAGGGACTACGACTGCAACTGGAACATCGACGACCAGCGCGTGTACGCCAGCGACG
AGGCGCACCGGCGGTGGTGGCAGGTGTACGACCAGAT-------------------------------------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSS-----------S---S-------------------------------S--------
------------------------------------------------S----S-----------------------S--
--------S---------S--------------------------------------S-------------------S--
-----------------------------------------S---S----------------------------------
--------------------S----S--------------------------------------------S---------
--------------------------------------------------------------S-----------------
---S----S-------------------------------------------------------------S---------
------------S-------------------------S-----------S-----------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
----------------------------S----------------------------------------------S----
--------------------------------------------------------------------------------
--------------S------------------------S---S------------------------------------
-----------------------------------------S----S---------------------------------
--------------------------------S-----------------------------------------------
---S-------------------------------------S-------------S-S----------SS--S-------
------------------------------------------S-------------------S-----------------
-------S------------------------------------SS--------------------------S-------
-----------------------------------------------------------------------------S--
------------------------------------------------------SS------------------------
--S-----------------------------------------------------------------------------
-----S----------------------S------------------------------S--------------------
--------------------------------------------------------------------------------
----------------------S-------------------------------------------------S-------
--------------------S--------------------S-----S---S-S--------------------------
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
S--S----------------------S------------S----------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-------------------------------S---------------------S-----
-------------------------------------------------S------------------------------
----------------------------------------S---------------S-----------------------
--------S---S-------------S-----------------------------------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
--------------S--S----------------------------------------S---SS-SSS-SS-S-------
----------------SS-------------------------------SS-----------------SS----------
--S-----------------------S-------------------------S------------------------S--
S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_282
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CCCATCTGCACCAAACCTGA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----
>reverse_1863
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TCTCCCACTCCCCAACCTC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----
>forward_1406
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CGTCATCGTCCAGCTCCTAC----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----
>reverse_3135
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------TCGGTCGATTTTCCTAGCCG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
