Multiple sequence alignment - TraesCS3B01G410000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G410000 chr3B 100.000 3341 0 0 1 3341 647077186 647080526 0.000000e+00 6170.0
1 TraesCS3B01G410000 chr3A 90.997 2788 159 40 595 3341 627252050 627254786 0.000000e+00 3674.0
2 TraesCS3B01G410000 chr3A 86.111 504 27 17 1 497 627251455 627251922 1.380000e-138 503.0
3 TraesCS3B01G410000 chr3D 92.699 2219 99 27 595 2772 484286944 484289140 0.000000e+00 3142.0
4 TraesCS3B01G410000 chr3D 84.053 533 32 15 1 518 484286348 484286842 6.530000e-127 464.0
5 TraesCS3B01G410000 chr4A 85.900 539 76 0 1645 2183 629859598 629860136 2.890000e-160 575.0
6 TraesCS3B01G410000 chr4A 85.176 398 59 0 1170 1567 576703436 576703039 3.100000e-110 409.0
7 TraesCS3B01G410000 chr5D 83.844 588 95 0 1596 2183 538789145 538788558 8.090000e-156 560.0
8 TraesCS3B01G410000 chr5D 91.436 397 34 0 1171 1567 389377 388981 2.270000e-151 545.0
9 TraesCS3B01G410000 chr5D 81.886 403 69 4 1167 1567 210375789 210375389 1.490000e-88 337.0
10 TraesCS3B01G410000 chr5A 90.932 397 36 0 1171 1567 228159 228555 4.910000e-148 534.0
11 TraesCS3B01G410000 chr4D 85.117 383 57 0 1170 1552 26668446 26668828 3.120000e-105 392.0
12 TraesCS3B01G410000 chr4B 85.117 383 57 0 1170 1552 39120608 39120990 3.120000e-105 392.0
13 TraesCS3B01G410000 chr5B 81.840 413 70 5 1167 1576 223984944 223984534 3.190000e-90 342.0
14 TraesCS3B01G410000 chr1A 86.250 80 9 2 2273 2351 468605909 468605831 5.940000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G410000 chr3B 647077186 647080526 3340 False 6170.0 6170 100.000 1 3341 1 chr3B.!!$F1 3340
1 TraesCS3B01G410000 chr3A 627251455 627254786 3331 False 2088.5 3674 88.554 1 3341 2 chr3A.!!$F1 3340
2 TraesCS3B01G410000 chr3D 484286348 484289140 2792 False 1803.0 3142 88.376 1 2772 2 chr3D.!!$F1 2771
3 TraesCS3B01G410000 chr4A 629859598 629860136 538 False 575.0 575 85.900 1645 2183 1 chr4A.!!$F1 538
4 TraesCS3B01G410000 chr5D 538788558 538789145 587 True 560.0 560 83.844 1596 2183 1 chr5D.!!$R3 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 565 0.108992 TGCTACCGTCGATGGTGTTC 60.109 55.0 34.65 23.26 43.68 3.18 F
1167 1270 0.243636 CCATCCTTCCGTTGCAAACC 59.756 55.0 0.00 0.00 46.28 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2240 2347 0.532862 AGGCACGCCATTAATCTCGG 60.533 55.0 11.35 0.0 38.92 4.63 R
3009 3140 0.103026 TCTGATGCCCGACTCGAATG 59.897 55.0 0.00 0.0 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 4.426112 GTCCCGGTCGTCGTTCCC 62.426 72.222 0.00 0.00 37.11 3.97
88 89 0.673644 CGTCGTTCCCCTTCAATGCT 60.674 55.000 0.00 0.00 0.00 3.79
89 90 0.804989 GTCGTTCCCCTTCAATGCTG 59.195 55.000 0.00 0.00 0.00 4.41
91 92 0.609131 CGTTCCCCTTCAATGCTGGT 60.609 55.000 0.00 0.00 0.00 4.00
92 93 0.890683 GTTCCCCTTCAATGCTGGTG 59.109 55.000 0.00 0.00 0.00 4.17
93 94 0.899717 TTCCCCTTCAATGCTGGTGC 60.900 55.000 0.00 0.00 40.20 5.01
94 95 2.353610 CCCCTTCAATGCTGGTGCC 61.354 63.158 0.00 0.00 38.71 5.01
95 96 2.703798 CCCTTCAATGCTGGTGCCG 61.704 63.158 0.00 0.00 38.71 5.69
96 97 1.973281 CCTTCAATGCTGGTGCCGT 60.973 57.895 0.00 0.00 38.71 5.68
97 98 1.210931 CTTCAATGCTGGTGCCGTG 59.789 57.895 0.00 0.00 38.71 4.94
98 99 2.807631 CTTCAATGCTGGTGCCGTGC 62.808 60.000 0.00 0.28 38.71 5.34
99 100 4.424566 CAATGCTGGTGCCGTGCC 62.425 66.667 4.18 0.00 38.71 5.01
231 241 4.092116 AGCATATAAAACTGCTCCCCTC 57.908 45.455 0.00 0.00 45.30 4.30
232 242 3.718956 AGCATATAAAACTGCTCCCCTCT 59.281 43.478 0.00 0.00 45.30 3.69
310 321 3.062466 CGTCACTCCGAGCTCCCA 61.062 66.667 8.47 0.00 0.00 4.37
311 322 2.574399 GTCACTCCGAGCTCCCAC 59.426 66.667 8.47 0.00 0.00 4.61
313 324 3.062466 CACTCCGAGCTCCCACGA 61.062 66.667 8.47 0.00 0.00 4.35
314 325 2.282958 ACTCCGAGCTCCCACGAA 60.283 61.111 8.47 0.00 0.00 3.85
315 326 2.182030 CTCCGAGCTCCCACGAAC 59.818 66.667 8.47 0.00 0.00 3.95
316 327 3.358076 CTCCGAGCTCCCACGAACC 62.358 68.421 8.47 0.00 0.00 3.62
317 328 3.691342 CCGAGCTCCCACGAACCA 61.691 66.667 8.47 0.00 0.00 3.67
336 347 3.131478 CCCCCAATCCGTCAACGC 61.131 66.667 0.00 0.00 38.18 4.84
387 400 5.420725 TCCTCCTTTCTGAATCGATTTGA 57.579 39.130 12.81 10.94 0.00 2.69
395 408 5.767816 TCTGAATCGATTTGATCCGTAGA 57.232 39.130 12.81 4.18 35.84 2.59
396 409 5.763088 TCTGAATCGATTTGATCCGTAGAG 58.237 41.667 12.81 0.00 35.84 2.43
398 411 4.202111 TGAATCGATTTGATCCGTAGAGCA 60.202 41.667 12.81 0.00 35.84 4.26
399 412 3.793797 TCGATTTGATCCGTAGAGCAA 57.206 42.857 0.00 0.00 46.27 3.91
408 421 2.738147 CGTAGAGCAACGGGTTCTG 58.262 57.895 6.08 0.00 37.65 3.02
409 422 1.352156 CGTAGAGCAACGGGTTCTGC 61.352 60.000 6.08 4.18 37.65 4.26
413 426 1.296715 AGCAACGGGTTCTGCTAGG 59.703 57.895 0.00 0.00 46.92 3.02
414 427 1.003718 GCAACGGGTTCTGCTAGGT 60.004 57.895 0.00 0.00 35.62 3.08
415 428 0.605589 GCAACGGGTTCTGCTAGGTT 60.606 55.000 0.00 0.00 35.62 3.50
416 429 1.156736 CAACGGGTTCTGCTAGGTTG 58.843 55.000 0.00 0.00 0.00 3.77
417 430 0.763035 AACGGGTTCTGCTAGGTTGT 59.237 50.000 0.00 0.00 0.00 3.32
418 431 0.763035 ACGGGTTCTGCTAGGTTGTT 59.237 50.000 0.00 0.00 0.00 2.83
419 432 1.142262 ACGGGTTCTGCTAGGTTGTTT 59.858 47.619 0.00 0.00 0.00 2.83
420 433 1.804748 CGGGTTCTGCTAGGTTGTTTC 59.195 52.381 0.00 0.00 0.00 2.78
421 434 1.804748 GGGTTCTGCTAGGTTGTTTCG 59.195 52.381 0.00 0.00 0.00 3.46
422 435 1.804748 GGTTCTGCTAGGTTGTTTCGG 59.195 52.381 0.00 0.00 0.00 4.30
432 445 1.673626 GGTTGTTTCGGTAGATCGCCA 60.674 52.381 9.47 0.00 0.00 5.69
433 446 2.070783 GTTGTTTCGGTAGATCGCCAA 58.929 47.619 9.47 1.81 0.00 4.52
465 478 0.533308 CTCGTGGTTTTTCCGGTGGA 60.533 55.000 0.00 0.00 39.52 4.02
468 481 1.068816 CGTGGTTTTTCCGGTGGATTC 60.069 52.381 0.00 0.00 39.52 2.52
469 482 2.235891 GTGGTTTTTCCGGTGGATTCT 58.764 47.619 0.00 0.00 39.52 2.40
490 506 4.722700 CTGGCAGGGTGGTTCGGG 62.723 72.222 6.61 0.00 0.00 5.14
500 516 0.886043 GTGGTTCGGGTGGTTGGTAC 60.886 60.000 0.00 0.00 0.00 3.34
504 522 2.357760 CGGGTGGTTGGTACGGTG 60.358 66.667 0.00 0.00 0.00 4.94
507 525 3.045492 GTGGTTGGTACGGTGCGG 61.045 66.667 0.00 0.00 0.00 5.69
508 526 3.548484 TGGTTGGTACGGTGCGGT 61.548 61.111 0.00 0.00 0.00 5.68
518 536 2.185867 GGTGCGGTGCGATCCTTA 59.814 61.111 0.00 0.00 0.00 2.69
521 539 3.330853 GCGGTGCGATCCTTAGCG 61.331 66.667 5.93 5.93 37.63 4.26
522 540 2.411701 CGGTGCGATCCTTAGCGA 59.588 61.111 4.66 0.00 36.35 4.93
524 542 1.437986 GGTGCGATCCTTAGCGAGT 59.562 57.895 0.00 0.00 36.35 4.18
526 544 1.201343 GTGCGATCCTTAGCGAGTTC 58.799 55.000 0.00 0.00 36.35 3.01
527 545 0.248498 TGCGATCCTTAGCGAGTTCG 60.248 55.000 0.00 0.00 36.35 3.95
528 546 0.248539 GCGATCCTTAGCGAGTTCGT 60.249 55.000 3.27 0.00 42.22 3.85
529 547 1.467875 CGATCCTTAGCGAGTTCGTG 58.532 55.000 3.27 0.00 42.22 4.35
530 548 1.201343 GATCCTTAGCGAGTTCGTGC 58.799 55.000 3.27 0.00 42.22 5.34
531 549 0.818296 ATCCTTAGCGAGTTCGTGCT 59.182 50.000 3.27 0.00 45.04 4.40
532 550 1.456296 TCCTTAGCGAGTTCGTGCTA 58.544 50.000 3.27 0.00 42.48 3.49
533 551 1.131883 TCCTTAGCGAGTTCGTGCTAC 59.868 52.381 3.27 0.00 42.98 3.58
538 556 1.862147 CGAGTTCGTGCTACCGTCG 60.862 63.158 0.00 0.00 34.11 5.12
547 565 0.108992 TGCTACCGTCGATGGTGTTC 60.109 55.000 34.65 23.26 43.68 3.18
560 578 3.260475 TGGTGTTCGATCATCGGATTT 57.740 42.857 7.33 0.00 40.88 2.17
561 579 3.605634 TGGTGTTCGATCATCGGATTTT 58.394 40.909 7.33 0.00 40.88 1.82
562 580 3.373748 TGGTGTTCGATCATCGGATTTTG 59.626 43.478 7.33 0.00 40.88 2.44
563 581 3.242739 GGTGTTCGATCATCGGATTTTGG 60.243 47.826 7.33 0.00 40.88 3.28
564 582 3.374058 GTGTTCGATCATCGGATTTTGGT 59.626 43.478 7.33 0.00 40.88 3.67
565 583 4.569162 GTGTTCGATCATCGGATTTTGGTA 59.431 41.667 7.33 0.00 40.88 3.25
566 584 5.236478 GTGTTCGATCATCGGATTTTGGTAT 59.764 40.000 7.33 0.00 40.88 2.73
567 585 5.236263 TGTTCGATCATCGGATTTTGGTATG 59.764 40.000 7.33 0.00 40.88 2.39
568 586 4.314961 TCGATCATCGGATTTTGGTATGG 58.685 43.478 7.33 0.00 40.88 2.74
569 587 4.065088 CGATCATCGGATTTTGGTATGGT 58.935 43.478 0.00 0.00 36.00 3.55
570 588 4.083855 CGATCATCGGATTTTGGTATGGTG 60.084 45.833 0.00 0.00 36.00 4.17
571 589 2.948979 TCATCGGATTTTGGTATGGTGC 59.051 45.455 0.00 0.00 0.00 5.01
572 590 1.757682 TCGGATTTTGGTATGGTGCC 58.242 50.000 0.00 0.00 0.00 5.01
573 591 0.380378 CGGATTTTGGTATGGTGCCG 59.620 55.000 0.00 0.00 0.00 5.69
574 592 1.470051 GGATTTTGGTATGGTGCCGT 58.530 50.000 0.00 0.00 0.00 5.68
575 593 1.822371 GGATTTTGGTATGGTGCCGTT 59.178 47.619 0.00 0.00 0.00 4.44
576 594 2.416701 GGATTTTGGTATGGTGCCGTTG 60.417 50.000 0.00 0.00 0.00 4.10
577 595 1.982660 TTTTGGTATGGTGCCGTTGA 58.017 45.000 0.00 0.00 0.00 3.18
578 596 2.208132 TTTGGTATGGTGCCGTTGAT 57.792 45.000 0.00 0.00 0.00 2.57
579 597 2.208132 TTGGTATGGTGCCGTTGATT 57.792 45.000 0.00 0.00 0.00 2.57
580 598 1.745232 TGGTATGGTGCCGTTGATTC 58.255 50.000 0.00 0.00 0.00 2.52
581 599 1.021968 GGTATGGTGCCGTTGATTCC 58.978 55.000 0.00 0.00 0.00 3.01
657 734 2.524887 TTCGGGTTCGGGGTGACT 60.525 61.111 0.00 0.00 36.95 3.41
684 761 6.035112 GTGAATCGTGAACTGGTAGAATCTTC 59.965 42.308 0.00 0.00 0.00 2.87
686 763 4.087182 TCGTGAACTGGTAGAATCTTCCT 58.913 43.478 7.44 0.00 0.00 3.36
689 766 6.380274 TCGTGAACTGGTAGAATCTTCCTAAT 59.620 38.462 7.44 0.00 0.00 1.73
734 816 7.524717 TTGGATCAATCTCGTGAGATATGTA 57.475 36.000 12.50 0.43 46.75 2.29
786 868 6.708054 AGTAGCTAATCAAGAATCAAATCCCG 59.292 38.462 0.00 0.00 0.00 5.14
797 879 2.571212 TCAAATCCCGCGCTAATCATT 58.429 42.857 5.56 0.00 0.00 2.57
802 884 1.621317 TCCCGCGCTAATCATTCCATA 59.379 47.619 5.56 0.00 0.00 2.74
803 885 1.732259 CCCGCGCTAATCATTCCATAC 59.268 52.381 5.56 0.00 0.00 2.39
811 893 6.402550 GCGCTAATCATTCCATACAATACCTG 60.403 42.308 0.00 0.00 0.00 4.00
812 894 6.402550 CGCTAATCATTCCATACAATACCTGC 60.403 42.308 0.00 0.00 0.00 4.85
820 902 6.252599 TCCATACAATACCTGCAGAAATCT 57.747 37.500 17.39 0.10 0.00 2.40
839 921 1.448119 TTGCGTGATGACCGGCAAAA 61.448 50.000 0.00 0.00 41.90 2.44
872 954 5.862860 TGTTATCACGCGTTTGTCTTGTATA 59.137 36.000 10.22 0.00 0.00 1.47
873 955 6.532302 TGTTATCACGCGTTTGTCTTGTATAT 59.468 34.615 10.22 0.00 0.00 0.86
883 965 7.306632 GCGTTTGTCTTGTATATCCATCTGTAC 60.307 40.741 0.00 0.00 0.00 2.90
894 976 4.243007 TCCATCTGTACATATGTGAGCG 57.757 45.455 18.81 8.30 0.00 5.03
915 1000 4.731961 GCGAATATTGTTGTGATGCTCAAG 59.268 41.667 0.00 0.00 0.00 3.02
965 1062 7.305648 CGAAATTTGAAGAAGCAGACTGAAAAC 60.306 37.037 6.65 0.00 0.00 2.43
1097 1194 5.242838 TGGTGTCAATCCCAAATTCAGTTAC 59.757 40.000 0.00 0.00 0.00 2.50
1098 1195 5.476945 GGTGTCAATCCCAAATTCAGTTACT 59.523 40.000 0.00 0.00 0.00 2.24
1099 1196 6.657541 GGTGTCAATCCCAAATTCAGTTACTA 59.342 38.462 0.00 0.00 0.00 1.82
1131 1234 1.078709 GCAGAGTACATTTCAGCGCA 58.921 50.000 11.47 0.00 0.00 6.09
1154 1257 3.007723 CGAACTGATCATCCATCCATCCT 59.992 47.826 0.00 0.00 0.00 3.24
1156 1259 4.637387 ACTGATCATCCATCCATCCTTC 57.363 45.455 0.00 0.00 0.00 3.46
1160 1263 2.126882 TCATCCATCCATCCTTCCGTT 58.873 47.619 0.00 0.00 0.00 4.44
1161 1264 2.158769 TCATCCATCCATCCTTCCGTTG 60.159 50.000 0.00 0.00 0.00 4.10
1167 1270 0.243636 CCATCCTTCCGTTGCAAACC 59.756 55.000 0.00 0.00 46.28 3.27
1168 1271 0.958091 CATCCTTCCGTTGCAAACCA 59.042 50.000 0.00 0.00 46.28 3.67
1327 1430 1.218316 CCTGACGCTCAAGTACCCC 59.782 63.158 0.00 0.00 0.00 4.95
2074 2177 0.684535 TGAACAAGGAGATCACCGCA 59.315 50.000 3.31 0.00 34.73 5.69
2134 2237 1.202582 CCGGAGAGGAAGTACAGTGTG 59.797 57.143 5.88 0.00 45.00 3.82
2224 2331 5.738909 ACTTGCTCACTAATGCTCTGTTAT 58.261 37.500 0.00 0.00 0.00 1.89
2237 2344 3.433615 GCTCTGTTATTGCTCGTTTCACT 59.566 43.478 0.00 0.00 0.00 3.41
2240 2347 4.923871 TCTGTTATTGCTCGTTTCACTCTC 59.076 41.667 0.00 0.00 0.00 3.20
2260 2370 1.299541 CGAGATTAATGGCGTGCCTT 58.700 50.000 12.84 2.54 36.94 4.35
2270 2380 0.031994 GGCGTGCCTTCATTTGTGTT 59.968 50.000 2.98 0.00 0.00 3.32
2271 2381 1.268352 GGCGTGCCTTCATTTGTGTTA 59.732 47.619 2.98 0.00 0.00 2.41
2394 2504 2.297701 TCAGTTGCTTGAGGTCCAAAC 58.702 47.619 0.00 0.00 33.76 2.93
2404 2514 2.700773 GGTCCAAACCGCAGATGCC 61.701 63.158 0.00 0.00 35.36 4.40
2456 2576 8.690445 CGTGGTTCACTGAATCATGGAACAAG 62.690 46.154 20.82 8.92 36.39 3.16
2495 2615 4.793216 CGATTGATGGTTTCGAACAATTCC 59.207 41.667 11.00 4.62 34.92 3.01
2537 2657 0.537371 GTGGGTTCACTGAAGGTGGG 60.537 60.000 0.00 0.00 45.38 4.61
2538 2658 0.991355 TGGGTTCACTGAAGGTGGGT 60.991 55.000 0.00 0.00 45.38 4.51
2571 2694 0.886938 TTGGTTTCGGCGATTCAGCA 60.887 50.000 11.76 11.17 39.27 4.41
2689 2812 3.005578 GTCGAACTACCTGGTCTGTTCTT 59.994 47.826 27.51 8.73 37.31 2.52
2692 2815 4.704965 GAACTACCTGGTCTGTTCTTGTT 58.295 43.478 25.39 11.83 36.73 2.83
2708 2836 7.051623 TGTTCTTGTTTGTAGAAGGAAGCTTA 58.948 34.615 0.00 0.00 32.60 3.09
2718 2846 8.370266 TGTAGAAGGAAGCTTATTGGTACTTA 57.630 34.615 0.00 0.00 0.00 2.24
2777 2908 5.392767 TGTTTGTTATGTGTTGTTGTGGT 57.607 34.783 0.00 0.00 0.00 4.16
2778 2909 6.510879 TGTTTGTTATGTGTTGTTGTGGTA 57.489 33.333 0.00 0.00 0.00 3.25
2779 2910 6.920817 TGTTTGTTATGTGTTGTTGTGGTAA 58.079 32.000 0.00 0.00 0.00 2.85
2780 2911 7.375834 TGTTTGTTATGTGTTGTTGTGGTAAA 58.624 30.769 0.00 0.00 0.00 2.01
2781 2912 7.870954 TGTTTGTTATGTGTTGTTGTGGTAAAA 59.129 29.630 0.00 0.00 0.00 1.52
2782 2913 8.709646 GTTTGTTATGTGTTGTTGTGGTAAAAA 58.290 29.630 0.00 0.00 0.00 1.94
2804 2935 5.880054 AAAGATCATAAAACGTGGAGTGG 57.120 39.130 0.00 0.00 0.00 4.00
2805 2936 4.819105 AGATCATAAAACGTGGAGTGGA 57.181 40.909 0.00 0.00 0.00 4.02
2835 2966 2.172851 TGATCCGGTTGGTGTGTTAC 57.827 50.000 0.00 0.00 36.30 2.50
2838 2969 0.680618 TCCGGTTGGTGTGTTACGAT 59.319 50.000 0.00 0.00 36.30 3.73
2863 2994 1.070786 AAGCGTCACAATCCCGTGT 59.929 52.632 0.00 0.00 38.12 4.49
2880 3011 1.021202 TGTGAGGGAAGTTTGCAACG 58.979 50.000 0.00 0.00 36.23 4.10
2884 3015 0.822121 AGGGAAGTTTGCAACGGGTC 60.822 55.000 0.00 0.00 36.23 4.46
2885 3016 1.281656 GGAAGTTTGCAACGGGTCG 59.718 57.895 0.00 0.00 36.23 4.79
2906 3037 6.301108 GTCGATGTATACTCTCGAAAGCTAG 58.699 44.000 23.45 0.00 42.42 3.42
2917 3048 4.686091 TCTCGAAAGCTAGACAACAATGTG 59.314 41.667 0.00 0.00 40.74 3.21
2970 3101 0.953960 AAACCCTGAATCGTGTCGGC 60.954 55.000 0.00 0.00 0.00 5.54
3003 3134 3.004419 TCGATACGACATCCTTGGTGATC 59.996 47.826 0.00 0.00 0.00 2.92
3004 3135 3.654414 GATACGACATCCTTGGTGATCC 58.346 50.000 0.00 0.00 0.00 3.36
3006 3137 1.909302 ACGACATCCTTGGTGATCCTT 59.091 47.619 0.00 0.00 34.23 3.36
3007 3138 2.093447 ACGACATCCTTGGTGATCCTTC 60.093 50.000 0.00 0.00 34.23 3.46
3008 3139 2.743183 CGACATCCTTGGTGATCCTTCC 60.743 54.545 0.00 0.00 34.23 3.46
3009 3140 1.566231 ACATCCTTGGTGATCCTTCCC 59.434 52.381 0.00 0.00 34.23 3.97
3043 3189 5.450137 GGGCATCAGAGATGAAATTGTTCAG 60.450 44.000 10.95 0.00 46.75 3.02
3061 3207 4.179926 TCAGATGGAAGTTTGAGACTCG 57.820 45.455 0.00 0.00 37.72 4.18
3084 3230 5.324832 AAGAAAATCTTCTTCCCTGTCCA 57.675 39.130 0.00 0.00 46.88 4.02
3098 3244 3.256631 CCCTGTCCATTTTCAACTGGAAG 59.743 47.826 0.41 2.18 42.99 3.46
3126 3272 2.959030 GCTCAAAGAAAACCTTCACCCT 59.041 45.455 0.00 0.00 33.02 4.34
3137 3283 4.790718 ACCTTCACCCTAGTCTGTTTTT 57.209 40.909 0.00 0.00 0.00 1.94
3196 3342 8.087750 CCTTTTAGTGGTATCATTTTGCTCAAA 58.912 33.333 0.00 0.00 0.00 2.69
3211 3357 4.738124 TGCTCAAACGAGAGATGACTTAG 58.262 43.478 8.13 0.00 37.87 2.18
3220 3366 5.298276 ACGAGAGATGACTTAGAAGTGATCC 59.702 44.000 15.52 9.17 46.58 3.36
3254 3400 6.483640 CCTTTTATAGGCTCTTGGTCATGTAC 59.516 42.308 0.00 0.00 37.17 2.90
3274 3420 6.539173 TGTACAAATGACCACCAATACTCTT 58.461 36.000 0.00 0.00 0.00 2.85
3298 3444 4.998033 GTGGGAGAGAAAAGTAAGGTCAAG 59.002 45.833 0.00 0.00 0.00 3.02
3330 3476 5.505181 AAGGAGAAAGAAAGCCATGTCTA 57.495 39.130 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 1.973281 ACGGCACCAGCATTGAAGG 60.973 57.895 0.00 0.00 44.61 3.46
230 240 2.223876 ACGAAGCAACACGAAAGGTAGA 60.224 45.455 0.00 0.00 0.00 2.59
231 241 2.132762 ACGAAGCAACACGAAAGGTAG 58.867 47.619 0.00 0.00 0.00 3.18
232 242 2.129607 GACGAAGCAACACGAAAGGTA 58.870 47.619 0.00 0.00 0.00 3.08
396 409 0.605589 AACCTAGCAGAACCCGTTGC 60.606 55.000 0.00 0.00 40.57 4.17
398 411 0.763035 ACAACCTAGCAGAACCCGTT 59.237 50.000 0.00 0.00 0.00 4.44
399 412 0.763035 AACAACCTAGCAGAACCCGT 59.237 50.000 0.00 0.00 0.00 5.28
400 413 1.804748 GAAACAACCTAGCAGAACCCG 59.195 52.381 0.00 0.00 0.00 5.28
401 414 1.804748 CGAAACAACCTAGCAGAACCC 59.195 52.381 0.00 0.00 0.00 4.11
404 417 2.922740 ACCGAAACAACCTAGCAGAA 57.077 45.000 0.00 0.00 0.00 3.02
407 420 3.428452 CGATCTACCGAAACAACCTAGCA 60.428 47.826 0.00 0.00 0.00 3.49
408 421 3.114065 CGATCTACCGAAACAACCTAGC 58.886 50.000 0.00 0.00 0.00 3.42
409 422 3.114065 GCGATCTACCGAAACAACCTAG 58.886 50.000 0.00 0.00 0.00 3.02
410 423 2.159198 GGCGATCTACCGAAACAACCTA 60.159 50.000 0.00 0.00 0.00 3.08
411 424 1.405121 GGCGATCTACCGAAACAACCT 60.405 52.381 0.00 0.00 0.00 3.50
413 426 1.717194 TGGCGATCTACCGAAACAAC 58.283 50.000 0.00 0.00 0.00 3.32
414 427 2.343101 CTTGGCGATCTACCGAAACAA 58.657 47.619 0.00 0.00 0.00 2.83
415 428 2.004583 CTTGGCGATCTACCGAAACA 57.995 50.000 0.00 0.00 0.00 2.83
416 429 0.651031 GCTTGGCGATCTACCGAAAC 59.349 55.000 0.00 0.00 0.00 2.78
417 430 3.059603 GCTTGGCGATCTACCGAAA 57.940 52.632 0.00 0.00 0.00 3.46
418 431 4.827481 GCTTGGCGATCTACCGAA 57.173 55.556 0.00 0.00 0.00 4.30
432 445 4.421479 CGAGCCGACACCTCGCTT 62.421 66.667 0.00 0.00 44.53 4.68
451 464 1.067846 GCAGAATCCACCGGAAAAACC 60.068 52.381 9.46 0.00 34.34 3.27
479 492 2.596338 CAACCACCCGAACCACCC 60.596 66.667 0.00 0.00 0.00 4.61
482 495 1.451072 GTACCAACCACCCGAACCA 59.549 57.895 0.00 0.00 0.00 3.67
487 500 2.357760 CACCGTACCAACCACCCG 60.358 66.667 0.00 0.00 0.00 5.28
490 506 3.045492 CCGCACCGTACCAACCAC 61.045 66.667 0.00 0.00 0.00 4.16
500 516 3.709880 TAAGGATCGCACCGCACCG 62.710 63.158 0.00 0.00 34.73 4.94
504 522 3.330853 CGCTAAGGATCGCACCGC 61.331 66.667 0.00 0.00 34.73 5.68
507 525 1.201343 GAACTCGCTAAGGATCGCAC 58.799 55.000 0.00 0.00 0.00 5.34
508 526 0.248498 CGAACTCGCTAAGGATCGCA 60.248 55.000 0.00 0.00 33.58 5.10
518 536 2.178521 CGGTAGCACGAACTCGCT 59.821 61.111 0.00 0.00 44.43 4.93
521 539 0.098376 ATCGACGGTAGCACGAACTC 59.902 55.000 13.41 0.00 39.38 3.01
522 540 0.179171 CATCGACGGTAGCACGAACT 60.179 55.000 13.41 0.00 39.38 3.01
524 542 1.138036 CCATCGACGGTAGCACGAA 59.862 57.895 13.41 1.03 39.38 3.85
526 544 1.872234 CACCATCGACGGTAGCACG 60.872 63.158 1.25 0.00 37.07 5.34
527 545 0.389426 AACACCATCGACGGTAGCAC 60.389 55.000 1.25 0.00 37.07 4.40
528 546 0.108992 GAACACCATCGACGGTAGCA 60.109 55.000 1.25 0.00 37.07 3.49
529 547 1.138047 CGAACACCATCGACGGTAGC 61.138 60.000 1.25 0.00 45.48 3.58
530 548 0.448990 TCGAACACCATCGACGGTAG 59.551 55.000 1.25 0.27 46.12 3.18
531 549 2.553962 TCGAACACCATCGACGGTA 58.446 52.632 1.25 0.00 46.12 4.02
532 550 3.357919 TCGAACACCATCGACGGT 58.642 55.556 0.00 0.00 46.12 4.83
538 556 2.509052 TCCGATGATCGAACACCATC 57.491 50.000 17.52 4.22 43.74 3.51
547 565 4.065088 ACCATACCAAAATCCGATGATCG 58.935 43.478 8.05 8.05 40.07 3.69
560 578 2.088423 GAATCAACGGCACCATACCAA 58.912 47.619 0.00 0.00 0.00 3.67
561 579 1.680555 GGAATCAACGGCACCATACCA 60.681 52.381 0.00 0.00 0.00 3.25
562 580 1.021968 GGAATCAACGGCACCATACC 58.978 55.000 0.00 0.00 0.00 2.73
563 581 0.655733 CGGAATCAACGGCACCATAC 59.344 55.000 0.00 0.00 0.00 2.39
564 582 0.250793 ACGGAATCAACGGCACCATA 59.749 50.000 0.00 0.00 35.23 2.74
565 583 0.250793 TACGGAATCAACGGCACCAT 59.749 50.000 0.00 0.00 35.23 3.55
566 584 0.390603 CTACGGAATCAACGGCACCA 60.391 55.000 0.00 0.00 35.23 4.17
567 585 1.087771 CCTACGGAATCAACGGCACC 61.088 60.000 0.00 0.00 35.23 5.01
568 586 0.108520 TCCTACGGAATCAACGGCAC 60.109 55.000 0.00 0.00 35.23 5.01
569 587 0.828022 ATCCTACGGAATCAACGGCA 59.172 50.000 0.00 0.00 34.34 5.69
570 588 1.068741 AGATCCTACGGAATCAACGGC 59.931 52.381 0.00 0.00 34.34 5.68
571 589 3.454371 AAGATCCTACGGAATCAACGG 57.546 47.619 0.00 0.00 34.34 4.44
572 590 6.015027 AGATAAGATCCTACGGAATCAACG 57.985 41.667 0.00 0.00 34.34 4.10
573 591 6.087522 CGAGATAAGATCCTACGGAATCAAC 58.912 44.000 0.00 0.00 34.34 3.18
574 592 5.768662 ACGAGATAAGATCCTACGGAATCAA 59.231 40.000 0.00 0.00 34.34 2.57
575 593 5.181433 CACGAGATAAGATCCTACGGAATCA 59.819 44.000 0.00 0.00 34.34 2.57
576 594 5.411977 TCACGAGATAAGATCCTACGGAATC 59.588 44.000 0.00 0.00 34.34 2.52
577 595 5.181622 GTCACGAGATAAGATCCTACGGAAT 59.818 44.000 0.00 0.00 34.34 3.01
578 596 4.514441 GTCACGAGATAAGATCCTACGGAA 59.486 45.833 0.00 0.00 34.34 4.30
579 597 4.063689 GTCACGAGATAAGATCCTACGGA 58.936 47.826 0.00 0.00 35.55 4.69
580 598 3.188873 GGTCACGAGATAAGATCCTACGG 59.811 52.174 0.00 0.00 0.00 4.02
581 599 3.120615 CGGTCACGAGATAAGATCCTACG 60.121 52.174 0.00 0.00 44.60 3.51
592 610 1.977009 TGGTCAGCGGTCACGAGAT 60.977 57.895 0.00 0.00 44.60 2.75
593 611 2.596338 TGGTCAGCGGTCACGAGA 60.596 61.111 0.00 0.00 44.60 4.04
619 696 2.166664 AGCGGTCAACAGAGAAGATACC 59.833 50.000 0.00 0.00 0.00 2.73
657 734 5.970317 TTCTACCAGTTCACGATTCACTA 57.030 39.130 0.00 0.00 0.00 2.74
684 761 4.850859 TCGCAAATCACGTGTTATTAGG 57.149 40.909 16.51 6.36 0.00 2.69
686 763 6.469139 TCTTTCGCAAATCACGTGTTATTA 57.531 33.333 16.51 0.00 0.00 0.98
689 766 5.143660 CAATCTTTCGCAAATCACGTGTTA 58.856 37.500 16.51 0.00 0.00 2.41
757 839 9.250624 GATTTGATTCTTGATTAGCTACTACGT 57.749 33.333 0.00 0.00 0.00 3.57
758 840 8.704234 GGATTTGATTCTTGATTAGCTACTACG 58.296 37.037 0.00 0.00 0.00 3.51
759 841 8.994170 GGGATTTGATTCTTGATTAGCTACTAC 58.006 37.037 0.00 0.00 0.00 2.73
760 842 7.872993 CGGGATTTGATTCTTGATTAGCTACTA 59.127 37.037 0.00 0.00 0.00 1.82
761 843 6.708054 CGGGATTTGATTCTTGATTAGCTACT 59.292 38.462 0.00 0.00 0.00 2.57
768 850 2.223572 GCGCGGGATTTGATTCTTGATT 60.224 45.455 8.83 0.00 0.00 2.57
771 853 0.734889 AGCGCGGGATTTGATTCTTG 59.265 50.000 8.83 0.00 0.00 3.02
776 858 2.254546 TGATTAGCGCGGGATTTGAT 57.745 45.000 8.83 0.00 0.00 2.57
786 868 5.643777 AGGTATTGTATGGAATGATTAGCGC 59.356 40.000 0.00 0.00 0.00 5.92
797 879 6.252599 AGATTTCTGCAGGTATTGTATGGA 57.747 37.500 15.13 0.00 0.00 3.41
802 884 3.127548 CGCAAGATTTCTGCAGGTATTGT 59.872 43.478 15.13 0.00 43.02 2.71
803 885 3.127548 ACGCAAGATTTCTGCAGGTATTG 59.872 43.478 15.13 14.30 43.62 1.90
811 893 2.476854 GGTCATCACGCAAGATTTCTGC 60.477 50.000 0.00 0.00 43.62 4.26
812 894 2.222886 CGGTCATCACGCAAGATTTCTG 60.223 50.000 0.00 0.00 43.62 3.02
820 902 1.448119 TTTTGCCGGTCATCACGCAA 61.448 50.000 1.90 0.00 0.00 4.85
839 921 3.450578 ACGCGTGATAACAAACGGATAT 58.549 40.909 12.93 0.00 40.12 1.63
872 954 4.524328 TCGCTCACATATGTACAGATGGAT 59.476 41.667 28.79 10.90 34.54 3.41
873 955 3.888930 TCGCTCACATATGTACAGATGGA 59.111 43.478 28.79 21.74 34.54 3.41
883 965 6.947258 TCACAACAATATTCGCTCACATATG 58.053 36.000 0.00 0.00 0.00 1.78
915 1000 6.128172 CGATAATAAAAGATCAGGGCATGGTC 60.128 42.308 3.81 3.81 39.57 4.02
953 1050 8.131731 ACAGAAGAATTTTAGTTTTCAGTCTGC 58.868 33.333 12.48 0.00 38.51 4.26
1097 1194 3.854666 ACTCTGCACTACAACATGCTAG 58.145 45.455 0.00 0.00 42.55 3.42
1098 1195 3.961480 ACTCTGCACTACAACATGCTA 57.039 42.857 0.00 0.00 42.55 3.49
1099 1196 2.847327 ACTCTGCACTACAACATGCT 57.153 45.000 0.00 0.00 42.55 3.79
1131 1234 3.244353 GGATGGATGGATGATCAGTTCGT 60.244 47.826 0.09 0.00 31.91 3.85
1154 1257 2.010582 GCCTGTGGTTTGCAACGGAA 62.011 55.000 0.00 0.00 0.00 4.30
1156 1259 2.027460 GCCTGTGGTTTGCAACGG 59.973 61.111 0.00 0.00 0.00 4.44
1561 1664 1.449601 GTCCATGACGATGCCGGTT 60.450 57.895 1.90 0.00 40.78 4.44
2053 2156 2.499693 TGCGGTGATCTCCTTGTTCATA 59.500 45.455 11.86 0.00 0.00 2.15
2193 2296 6.878317 AGCATTAGTGAGCAAGTATGTAAGA 58.122 36.000 0.00 0.00 0.00 2.10
2195 2298 6.758416 CAGAGCATTAGTGAGCAAGTATGTAA 59.242 38.462 0.00 0.00 0.00 2.41
2204 2307 4.333649 GCAATAACAGAGCATTAGTGAGCA 59.666 41.667 0.00 0.00 30.96 4.26
2205 2308 4.574013 AGCAATAACAGAGCATTAGTGAGC 59.426 41.667 0.00 0.00 30.96 4.26
2206 2309 5.051173 CGAGCAATAACAGAGCATTAGTGAG 60.051 44.000 0.00 0.00 30.96 3.51
2207 2310 4.805719 CGAGCAATAACAGAGCATTAGTGA 59.194 41.667 0.00 0.00 30.96 3.41
2208 2311 4.568359 ACGAGCAATAACAGAGCATTAGTG 59.432 41.667 0.00 0.00 32.22 2.74
2224 2331 0.671796 TCGGAGAGTGAAACGAGCAA 59.328 50.000 0.00 0.00 45.86 3.91
2237 2344 1.538204 GCACGCCATTAATCTCGGAGA 60.538 52.381 10.62 10.62 0.00 3.71
2240 2347 0.532862 AGGCACGCCATTAATCTCGG 60.533 55.000 11.35 0.00 38.92 4.63
2260 2370 6.475504 AGATCCACATCTGTAACACAAATGA 58.524 36.000 0.00 0.00 38.03 2.57
2394 2504 1.028330 ACACATTCAGGCATCTGCGG 61.028 55.000 0.00 0.00 43.26 5.69
2404 2514 3.365264 CGTGGAAACCATGACACATTCAG 60.365 47.826 4.18 0.00 42.73 3.02
2456 2576 5.934935 TCAATCGACCTTACCTTTCAAAC 57.065 39.130 0.00 0.00 0.00 2.93
2501 2621 1.300697 ACTGAAACTGACCCGACGC 60.301 57.895 0.00 0.00 0.00 5.19
2533 2653 4.041075 ACCAAAATAAATGTCCCAACCCAC 59.959 41.667 0.00 0.00 0.00 4.61
2534 2654 4.235372 ACCAAAATAAATGTCCCAACCCA 58.765 39.130 0.00 0.00 0.00 4.51
2535 2655 4.901197 ACCAAAATAAATGTCCCAACCC 57.099 40.909 0.00 0.00 0.00 4.11
2537 2657 5.407084 CCGAAACCAAAATAAATGTCCCAAC 59.593 40.000 0.00 0.00 0.00 3.77
2538 2658 5.542779 CCGAAACCAAAATAAATGTCCCAA 58.457 37.500 0.00 0.00 0.00 4.12
2571 2694 1.669115 GTCTCCAGCACACGCATGT 60.669 57.895 0.00 0.00 42.27 3.21
2689 2812 6.303839 ACCAATAAGCTTCCTTCTACAAACA 58.696 36.000 0.00 0.00 32.47 2.83
2692 2815 7.253905 AGTACCAATAAGCTTCCTTCTACAA 57.746 36.000 0.00 0.00 32.47 2.41
2780 2911 6.488683 TCCACTCCACGTTTTATGATCTTTTT 59.511 34.615 0.00 0.00 0.00 1.94
2781 2912 6.001460 TCCACTCCACGTTTTATGATCTTTT 58.999 36.000 0.00 0.00 0.00 2.27
2782 2913 5.556915 TCCACTCCACGTTTTATGATCTTT 58.443 37.500 0.00 0.00 0.00 2.52
2783 2914 5.160607 TCCACTCCACGTTTTATGATCTT 57.839 39.130 0.00 0.00 0.00 2.40
2784 2915 4.819105 TCCACTCCACGTTTTATGATCT 57.181 40.909 0.00 0.00 0.00 2.75
2785 2916 6.281405 AGTATCCACTCCACGTTTTATGATC 58.719 40.000 0.00 0.00 0.00 2.92
2786 2917 6.235231 AGTATCCACTCCACGTTTTATGAT 57.765 37.500 0.00 0.00 0.00 2.45
2787 2918 5.657474 GAGTATCCACTCCACGTTTTATGA 58.343 41.667 0.00 0.00 44.72 2.15
2788 2919 5.968387 GAGTATCCACTCCACGTTTTATG 57.032 43.478 0.00 0.00 44.72 1.90
2799 2930 4.113354 GGATCAACAACGAGTATCCACTC 58.887 47.826 0.00 0.00 46.60 3.51
2800 2931 3.428999 CGGATCAACAACGAGTATCCACT 60.429 47.826 11.99 0.00 35.81 4.00
2801 2932 2.858344 CGGATCAACAACGAGTATCCAC 59.142 50.000 11.99 0.00 35.81 4.02
2802 2933 2.159156 CCGGATCAACAACGAGTATCCA 60.159 50.000 0.00 0.00 35.81 3.41
2803 2934 2.159142 ACCGGATCAACAACGAGTATCC 60.159 50.000 9.46 0.00 33.68 2.59
2804 2935 3.160777 ACCGGATCAACAACGAGTATC 57.839 47.619 9.46 0.00 0.00 2.24
2805 2936 3.259064 CAACCGGATCAACAACGAGTAT 58.741 45.455 9.46 0.00 0.00 2.12
2835 2966 1.629013 TGTGACGCTTGCTAGAATCG 58.371 50.000 0.00 0.00 0.00 3.34
2838 2969 2.346803 GGATTGTGACGCTTGCTAGAA 58.653 47.619 0.00 0.00 0.00 2.10
2863 2994 0.821711 CCCGTTGCAAACTTCCCTCA 60.822 55.000 0.00 0.00 46.99 3.86
2866 2997 1.658114 GACCCGTTGCAAACTTCCC 59.342 57.895 0.00 0.00 46.99 3.97
2880 3011 4.785417 CTTTCGAGAGTATACATCGACCC 58.215 47.826 24.37 5.47 44.43 4.46
2884 3015 6.073711 TGTCTAGCTTTCGAGAGTATACATCG 60.074 42.308 19.05 19.05 37.79 3.84
2885 3016 7.192148 TGTCTAGCTTTCGAGAGTATACATC 57.808 40.000 5.50 1.97 0.00 3.06
2917 3048 1.272212 CAAGGCCATACCCACACAAAC 59.728 52.381 5.01 0.00 40.58 2.93
2926 3057 5.570320 ACAATATGTATCCAAGGCCATACC 58.430 41.667 5.01 0.00 39.61 2.73
2947 3078 2.489971 GACACGATTCAGGGTTTGACA 58.510 47.619 0.00 0.00 34.94 3.58
2953 3084 2.264794 GCCGACACGATTCAGGGT 59.735 61.111 0.00 0.00 0.00 4.34
2955 3086 2.885644 CCGCCGACACGATTCAGG 60.886 66.667 0.00 0.00 34.06 3.86
2957 3088 4.063967 AGCCGCCGACACGATTCA 62.064 61.111 0.00 0.00 34.06 2.57
2958 3089 3.554692 CAGCCGCCGACACGATTC 61.555 66.667 0.00 0.00 34.06 2.52
2983 3114 3.322254 AGGATCACCAAGGATGTCGTATC 59.678 47.826 0.00 0.00 38.94 2.24
2988 3119 2.422093 GGGAAGGATCACCAAGGATGTC 60.422 54.545 0.00 0.00 38.94 3.06
3003 3134 1.144057 CCCGACTCGAATGGGAAGG 59.856 63.158 10.08 0.00 46.41 3.46
3004 3135 1.521681 GCCCGACTCGAATGGGAAG 60.522 63.158 17.94 0.00 46.41 3.46
3006 3137 2.028125 GATGCCCGACTCGAATGGGA 62.028 60.000 17.94 3.53 46.41 4.37
3007 3138 1.595382 GATGCCCGACTCGAATGGG 60.595 63.158 11.07 11.07 46.22 4.00
3008 3139 0.877649 CTGATGCCCGACTCGAATGG 60.878 60.000 0.00 0.00 0.00 3.16
3009 3140 0.103026 TCTGATGCCCGACTCGAATG 59.897 55.000 0.00 0.00 0.00 2.67
3043 3189 4.810790 TCTTCGAGTCTCAAACTTCCATC 58.189 43.478 0.00 0.00 38.74 3.51
3078 3224 4.022849 GGACTTCCAGTTGAAAATGGACAG 60.023 45.833 11.53 13.39 45.20 3.51
3098 3244 4.590850 AGGTTTTCTTTGAGCATTGGAC 57.409 40.909 0.00 0.00 0.00 4.02
3155 3301 3.807368 AGGCGTGGACTAGGCTTT 58.193 55.556 0.00 0.00 40.53 3.51
3186 3332 4.380531 AGTCATCTCTCGTTTGAGCAAAA 58.619 39.130 0.00 0.00 42.26 2.44
3196 3342 5.298276 GGATCACTTCTAAGTCATCTCTCGT 59.702 44.000 6.68 0.00 36.82 4.18
3211 3357 1.098050 GGCACACCATGGATCACTTC 58.902 55.000 21.47 0.20 35.26 3.01
3248 3394 6.599244 AGAGTATTGGTGGTCATTTGTACATG 59.401 38.462 0.00 0.00 0.00 3.21
3249 3395 6.721318 AGAGTATTGGTGGTCATTTGTACAT 58.279 36.000 0.00 0.00 0.00 2.29
3254 3400 5.335897 CCACAAGAGTATTGGTGGTCATTTG 60.336 44.000 2.04 0.00 44.47 2.32
3274 3420 3.971305 TGACCTTACTTTTCTCTCCCACA 59.029 43.478 0.00 0.00 0.00 4.17
3298 3444 5.508153 GCTTTCTTTCTCCTTTTTGAGGGTC 60.508 44.000 0.00 0.00 46.31 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.