Multiple sequence alignment - TraesCS3B01G400100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G400100 | chr3B | 100.000 | 3534 | 0 | 0 | 1 | 3534 | 631660480 | 631664013 | 0.000000e+00 | 6527 |
1 | TraesCS3B01G400100 | chr3D | 96.209 | 2664 | 65 | 11 | 620 | 3255 | 475121774 | 475124429 | 0.000000e+00 | 4327 |
2 | TraesCS3B01G400100 | chr3D | 91.232 | 422 | 18 | 8 | 183 | 587 | 475121363 | 475121782 | 1.110000e-154 | 556 |
3 | TraesCS3B01G400100 | chr3D | 92.996 | 257 | 15 | 2 | 3281 | 3534 | 475124413 | 475124669 | 4.310000e-99 | 372 |
4 | TraesCS3B01G400100 | chr3A | 95.157 | 2643 | 81 | 19 | 620 | 3245 | 617532132 | 617534744 | 0.000000e+00 | 4128 |
5 | TraesCS3B01G400100 | chr3A | 86.879 | 282 | 21 | 6 | 321 | 587 | 617531860 | 617532140 | 5.730000e-78 | 302 |
6 | TraesCS3B01G400100 | chr3A | 88.166 | 169 | 10 | 7 | 124 | 285 | 617531698 | 617531863 | 3.600000e-45 | 193 |
7 | TraesCS3B01G400100 | chr1B | 75.469 | 1333 | 252 | 52 | 1243 | 2540 | 499593382 | 499592090 | 6.580000e-162 | 580 |
8 | TraesCS3B01G400100 | chr1A | 78.146 | 453 | 74 | 15 | 1192 | 1636 | 474293259 | 474292824 | 7.520000e-67 | 265 |
9 | TraesCS3B01G400100 | chr1D | 77.728 | 449 | 80 | 12 | 1192 | 1636 | 375205607 | 375205175 | 1.260000e-64 | 257 |
10 | TraesCS3B01G400100 | chr6B | 79.348 | 184 | 34 | 4 | 1401 | 1581 | 526337543 | 526337725 | 3.700000e-25 | 126 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G400100 | chr3B | 631660480 | 631664013 | 3533 | False | 6527.000000 | 6527 | 100.000000 | 1 | 3534 | 1 | chr3B.!!$F1 | 3533 |
1 | TraesCS3B01G400100 | chr3D | 475121363 | 475124669 | 3306 | False | 1751.666667 | 4327 | 93.479000 | 183 | 3534 | 3 | chr3D.!!$F1 | 3351 |
2 | TraesCS3B01G400100 | chr3A | 617531698 | 617534744 | 3046 | False | 1541.000000 | 4128 | 90.067333 | 124 | 3245 | 3 | chr3A.!!$F1 | 3121 |
3 | TraesCS3B01G400100 | chr1B | 499592090 | 499593382 | 1292 | True | 580.000000 | 580 | 75.469000 | 1243 | 2540 | 1 | chr1B.!!$R1 | 1297 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
616 | 647 | 0.03563 | AGCCTCACCTGACATCTTGC | 60.036 | 55.0 | 0.0 | 0.0 | 0.0 | 4.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2554 | 2649 | 1.683707 | TGCTGCTGGATCTCGGAGT | 60.684 | 57.895 | 4.69 | 0.0 | 0.0 | 3.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 2.155065 | CAAGGGGTTGGTGAGAGGT | 58.845 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
19 | 20 | 0.250901 | CAAGGGGTTGGTGAGAGGTG | 60.251 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
20 | 21 | 0.401395 | AAGGGGTTGGTGAGAGGTGA | 60.401 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
21 | 22 | 0.838122 | AGGGGTTGGTGAGAGGTGAG | 60.838 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
22 | 23 | 0.836400 | GGGGTTGGTGAGAGGTGAGA | 60.836 | 60.000 | 0.00 | 0.00 | 0.00 | 3.27 |
23 | 24 | 0.321996 | GGGTTGGTGAGAGGTGAGAC | 59.678 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
24 | 25 | 0.038159 | GGTTGGTGAGAGGTGAGACG | 60.038 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
25 | 26 | 0.959553 | GTTGGTGAGAGGTGAGACGA | 59.040 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
26 | 27 | 1.068194 | GTTGGTGAGAGGTGAGACGAG | 60.068 | 57.143 | 0.00 | 0.00 | 0.00 | 4.18 |
27 | 28 | 0.400594 | TGGTGAGAGGTGAGACGAGA | 59.599 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
28 | 29 | 0.806241 | GGTGAGAGGTGAGACGAGAC | 59.194 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
29 | 30 | 1.612199 | GGTGAGAGGTGAGACGAGACT | 60.612 | 57.143 | 0.00 | 0.00 | 0.00 | 3.24 |
30 | 31 | 2.354906 | GGTGAGAGGTGAGACGAGACTA | 60.355 | 54.545 | 0.00 | 0.00 | 0.00 | 2.59 |
31 | 32 | 3.537580 | GTGAGAGGTGAGACGAGACTAT | 58.462 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
32 | 33 | 3.942748 | GTGAGAGGTGAGACGAGACTATT | 59.057 | 47.826 | 0.00 | 0.00 | 0.00 | 1.73 |
33 | 34 | 5.117584 | GTGAGAGGTGAGACGAGACTATTA | 58.882 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
34 | 35 | 5.235616 | GTGAGAGGTGAGACGAGACTATTAG | 59.764 | 48.000 | 0.00 | 0.00 | 0.00 | 1.73 |
35 | 36 | 4.131596 | AGAGGTGAGACGAGACTATTAGC | 58.868 | 47.826 | 0.00 | 0.00 | 0.00 | 3.09 |
36 | 37 | 4.131596 | GAGGTGAGACGAGACTATTAGCT | 58.868 | 47.826 | 0.00 | 0.00 | 0.00 | 3.32 |
37 | 38 | 4.528920 | AGGTGAGACGAGACTATTAGCTT | 58.471 | 43.478 | 0.00 | 0.00 | 0.00 | 3.74 |
38 | 39 | 4.951094 | AGGTGAGACGAGACTATTAGCTTT | 59.049 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
39 | 40 | 5.419471 | AGGTGAGACGAGACTATTAGCTTTT | 59.581 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
40 | 41 | 5.744819 | GGTGAGACGAGACTATTAGCTTTTC | 59.255 | 44.000 | 0.00 | 0.00 | 0.00 | 2.29 |
41 | 42 | 5.744819 | GTGAGACGAGACTATTAGCTTTTCC | 59.255 | 44.000 | 0.00 | 0.00 | 0.00 | 3.13 |
42 | 43 | 5.652891 | TGAGACGAGACTATTAGCTTTTCCT | 59.347 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
43 | 44 | 6.153000 | TGAGACGAGACTATTAGCTTTTCCTT | 59.847 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
44 | 45 | 6.937392 | AGACGAGACTATTAGCTTTTCCTTT | 58.063 | 36.000 | 0.00 | 0.00 | 0.00 | 3.11 |
45 | 46 | 8.064336 | AGACGAGACTATTAGCTTTTCCTTTA | 57.936 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
46 | 47 | 8.192110 | AGACGAGACTATTAGCTTTTCCTTTAG | 58.808 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
47 | 48 | 7.266400 | ACGAGACTATTAGCTTTTCCTTTAGG | 58.734 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
48 | 49 | 7.123847 | ACGAGACTATTAGCTTTTCCTTTAGGA | 59.876 | 37.037 | 0.00 | 0.00 | 43.73 | 2.94 |
49 | 50 | 7.650104 | CGAGACTATTAGCTTTTCCTTTAGGAG | 59.350 | 40.741 | 0.00 | 0.00 | 46.36 | 3.69 |
50 | 51 | 8.382058 | AGACTATTAGCTTTTCCTTTAGGAGT | 57.618 | 34.615 | 0.00 | 0.00 | 46.36 | 3.85 |
51 | 52 | 9.490083 | AGACTATTAGCTTTTCCTTTAGGAGTA | 57.510 | 33.333 | 0.00 | 0.00 | 46.36 | 2.59 |
52 | 53 | 9.752961 | GACTATTAGCTTTTCCTTTAGGAGTAG | 57.247 | 37.037 | 0.00 | 2.41 | 46.36 | 2.57 |
53 | 54 | 9.490083 | ACTATTAGCTTTTCCTTTAGGAGTAGA | 57.510 | 33.333 | 0.00 | 0.00 | 46.36 | 2.59 |
54 | 55 | 9.974980 | CTATTAGCTTTTCCTTTAGGAGTAGAG | 57.025 | 37.037 | 0.00 | 5.10 | 46.36 | 2.43 |
55 | 56 | 8.611051 | ATTAGCTTTTCCTTTAGGAGTAGAGA | 57.389 | 34.615 | 0.00 | 0.00 | 46.36 | 3.10 |
56 | 57 | 8.611051 | TTAGCTTTTCCTTTAGGAGTAGAGAT | 57.389 | 34.615 | 0.00 | 5.24 | 46.36 | 2.75 |
57 | 58 | 7.503492 | AGCTTTTCCTTTAGGAGTAGAGATT | 57.497 | 36.000 | 11.32 | 0.00 | 46.36 | 2.40 |
58 | 59 | 8.611051 | AGCTTTTCCTTTAGGAGTAGAGATTA | 57.389 | 34.615 | 11.32 | 0.00 | 46.36 | 1.75 |
59 | 60 | 9.219715 | AGCTTTTCCTTTAGGAGTAGAGATTAT | 57.780 | 33.333 | 11.32 | 0.00 | 46.36 | 1.28 |
60 | 61 | 9.839817 | GCTTTTCCTTTAGGAGTAGAGATTATT | 57.160 | 33.333 | 11.32 | 0.00 | 46.36 | 1.40 |
65 | 66 | 9.488762 | TCCTTTAGGAGTAGAGATTATTTGACA | 57.511 | 33.333 | 0.00 | 0.00 | 39.78 | 3.58 |
71 | 72 | 8.932610 | AGGAGTAGAGATTATTTGACATCATGT | 58.067 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
85 | 86 | 3.458872 | CATGTCGGCCATGTGTAGT | 57.541 | 52.632 | 2.24 | 0.00 | 44.96 | 2.73 |
86 | 87 | 2.595124 | CATGTCGGCCATGTGTAGTA | 57.405 | 50.000 | 2.24 | 0.00 | 44.96 | 1.82 |
87 | 88 | 3.111853 | CATGTCGGCCATGTGTAGTAT | 57.888 | 47.619 | 2.24 | 0.00 | 44.96 | 2.12 |
88 | 89 | 4.251543 | CATGTCGGCCATGTGTAGTATA | 57.748 | 45.455 | 2.24 | 0.00 | 44.96 | 1.47 |
89 | 90 | 3.720949 | TGTCGGCCATGTGTAGTATAC | 57.279 | 47.619 | 2.24 | 0.00 | 43.42 | 1.47 |
90 | 91 | 3.293337 | TGTCGGCCATGTGTAGTATACT | 58.707 | 45.455 | 10.87 | 10.87 | 43.54 | 2.12 |
91 | 92 | 3.702548 | TGTCGGCCATGTGTAGTATACTT | 59.297 | 43.478 | 11.40 | 0.00 | 43.54 | 2.24 |
92 | 93 | 4.160814 | TGTCGGCCATGTGTAGTATACTTT | 59.839 | 41.667 | 11.40 | 0.00 | 43.54 | 2.66 |
93 | 94 | 4.506654 | GTCGGCCATGTGTAGTATACTTTG | 59.493 | 45.833 | 11.40 | 2.21 | 43.54 | 2.77 |
94 | 95 | 3.247648 | CGGCCATGTGTAGTATACTTTGC | 59.752 | 47.826 | 11.40 | 0.00 | 43.54 | 3.68 |
95 | 96 | 4.451900 | GGCCATGTGTAGTATACTTTGCT | 58.548 | 43.478 | 11.40 | 0.00 | 43.54 | 3.91 |
96 | 97 | 4.881850 | GGCCATGTGTAGTATACTTTGCTT | 59.118 | 41.667 | 11.40 | 0.00 | 43.54 | 3.91 |
97 | 98 | 5.357032 | GGCCATGTGTAGTATACTTTGCTTT | 59.643 | 40.000 | 11.40 | 0.00 | 43.54 | 3.51 |
98 | 99 | 6.127730 | GGCCATGTGTAGTATACTTTGCTTTT | 60.128 | 38.462 | 11.40 | 0.00 | 43.54 | 2.27 |
99 | 100 | 7.312899 | GCCATGTGTAGTATACTTTGCTTTTT | 58.687 | 34.615 | 11.40 | 0.00 | 43.54 | 1.94 |
122 | 123 | 8.915871 | TTTTAGTATACACGTGATACTGAACC | 57.084 | 34.615 | 30.22 | 12.75 | 39.80 | 3.62 |
142 | 143 | 9.248291 | CTGAACCAATATACAATACCAAAATGC | 57.752 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
180 | 186 | 4.785346 | AATAAGATGTCACTGCTCCCAT | 57.215 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
194 | 200 | 2.093235 | GCTCCCATCTAACTGCAGTCTT | 60.093 | 50.000 | 21.95 | 8.21 | 0.00 | 3.01 |
241 | 248 | 9.705290 | ATTTCATGTTACAAAGGTTGATAAACC | 57.295 | 29.630 | 3.39 | 3.39 | 43.15 | 3.27 |
242 | 249 | 7.825331 | TCATGTTACAAAGGTTGATAAACCA | 57.175 | 32.000 | 14.82 | 0.00 | 45.23 | 3.67 |
243 | 250 | 8.415950 | TCATGTTACAAAGGTTGATAAACCAT | 57.584 | 30.769 | 14.82 | 0.00 | 45.23 | 3.55 |
245 | 252 | 6.987386 | TGTTACAAAGGTTGATAAACCATGG | 58.013 | 36.000 | 14.82 | 11.19 | 45.23 | 3.66 |
246 | 253 | 6.778069 | TGTTACAAAGGTTGATAAACCATGGA | 59.222 | 34.615 | 21.47 | 6.68 | 45.23 | 3.41 |
278 | 287 | 6.742718 | CGATTGCGAGAAATTTCAGTTACATT | 59.257 | 34.615 | 19.99 | 7.21 | 40.82 | 2.71 |
535 | 564 | 2.019951 | CCCACACTACGCACACGAC | 61.020 | 63.158 | 0.00 | 0.00 | 43.93 | 4.34 |
536 | 565 | 2.362047 | CCACACTACGCACACGACG | 61.362 | 63.158 | 0.00 | 0.00 | 43.93 | 5.12 |
537 | 566 | 1.369568 | CACACTACGCACACGACGA | 60.370 | 57.895 | 0.00 | 0.00 | 43.93 | 4.20 |
542 | 573 | 1.057636 | CTACGCACACGACGAAACAT | 58.942 | 50.000 | 0.00 | 0.00 | 43.93 | 2.71 |
578 | 609 | 1.911766 | AACACCCCATCGTCTCCGT | 60.912 | 57.895 | 0.00 | 0.00 | 35.01 | 4.69 |
579 | 610 | 1.885163 | AACACCCCATCGTCTCCGTC | 61.885 | 60.000 | 0.00 | 0.00 | 35.01 | 4.79 |
580 | 611 | 2.052690 | CACCCCATCGTCTCCGTCT | 61.053 | 63.158 | 0.00 | 0.00 | 35.01 | 4.18 |
581 | 612 | 1.753463 | ACCCCATCGTCTCCGTCTC | 60.753 | 63.158 | 0.00 | 0.00 | 35.01 | 3.36 |
582 | 613 | 1.454111 | CCCCATCGTCTCCGTCTCT | 60.454 | 63.158 | 0.00 | 0.00 | 35.01 | 3.10 |
583 | 614 | 0.179026 | CCCCATCGTCTCCGTCTCTA | 60.179 | 60.000 | 0.00 | 0.00 | 35.01 | 2.43 |
584 | 615 | 1.545875 | CCCCATCGTCTCCGTCTCTAT | 60.546 | 57.143 | 0.00 | 0.00 | 35.01 | 1.98 |
585 | 616 | 2.231529 | CCCATCGTCTCCGTCTCTATT | 58.768 | 52.381 | 0.00 | 0.00 | 35.01 | 1.73 |
586 | 617 | 2.226912 | CCCATCGTCTCCGTCTCTATTC | 59.773 | 54.545 | 0.00 | 0.00 | 35.01 | 1.75 |
587 | 618 | 2.879026 | CCATCGTCTCCGTCTCTATTCA | 59.121 | 50.000 | 0.00 | 0.00 | 35.01 | 2.57 |
588 | 619 | 3.504134 | CCATCGTCTCCGTCTCTATTCAT | 59.496 | 47.826 | 0.00 | 0.00 | 35.01 | 2.57 |
589 | 620 | 4.022762 | CCATCGTCTCCGTCTCTATTCATT | 60.023 | 45.833 | 0.00 | 0.00 | 35.01 | 2.57 |
590 | 621 | 4.815040 | TCGTCTCCGTCTCTATTCATTC | 57.185 | 45.455 | 0.00 | 0.00 | 35.01 | 2.67 |
591 | 622 | 4.196971 | TCGTCTCCGTCTCTATTCATTCA | 58.803 | 43.478 | 0.00 | 0.00 | 35.01 | 2.57 |
592 | 623 | 4.035324 | TCGTCTCCGTCTCTATTCATTCAC | 59.965 | 45.833 | 0.00 | 0.00 | 35.01 | 3.18 |
593 | 624 | 4.035792 | CGTCTCCGTCTCTATTCATTCACT | 59.964 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
594 | 625 | 5.449314 | CGTCTCCGTCTCTATTCATTCACTT | 60.449 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
595 | 626 | 5.746245 | GTCTCCGTCTCTATTCATTCACTTG | 59.254 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
596 | 627 | 5.011090 | TCCGTCTCTATTCATTCACTTGG | 57.989 | 43.478 | 0.00 | 0.00 | 0.00 | 3.61 |
597 | 628 | 4.709886 | TCCGTCTCTATTCATTCACTTGGA | 59.290 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
598 | 629 | 5.046529 | CCGTCTCTATTCATTCACTTGGAG | 58.953 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
599 | 630 | 4.505922 | CGTCTCTATTCATTCACTTGGAGC | 59.494 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
600 | 631 | 4.813697 | GTCTCTATTCATTCACTTGGAGCC | 59.186 | 45.833 | 0.00 | 0.00 | 0.00 | 4.70 |
601 | 632 | 4.718774 | TCTCTATTCATTCACTTGGAGCCT | 59.281 | 41.667 | 0.00 | 0.00 | 0.00 | 4.58 |
602 | 633 | 5.028549 | TCTATTCATTCACTTGGAGCCTC | 57.971 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
603 | 634 | 3.726557 | ATTCATTCACTTGGAGCCTCA | 57.273 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
604 | 635 | 2.479566 | TCATTCACTTGGAGCCTCAC | 57.520 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
605 | 636 | 1.003580 | TCATTCACTTGGAGCCTCACC | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
606 | 637 | 1.004044 | CATTCACTTGGAGCCTCACCT | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
607 | 638 | 0.397941 | TTCACTTGGAGCCTCACCTG | 59.602 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
608 | 639 | 0.471780 | TCACTTGGAGCCTCACCTGA | 60.472 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
609 | 640 | 0.321122 | CACTTGGAGCCTCACCTGAC | 60.321 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
610 | 641 | 0.764369 | ACTTGGAGCCTCACCTGACA | 60.764 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
611 | 642 | 0.617413 | CTTGGAGCCTCACCTGACAT | 59.383 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
612 | 643 | 0.615331 | TTGGAGCCTCACCTGACATC | 59.385 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
613 | 644 | 0.252421 | TGGAGCCTCACCTGACATCT | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
614 | 645 | 0.908198 | GGAGCCTCACCTGACATCTT | 59.092 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
615 | 646 | 1.406614 | GGAGCCTCACCTGACATCTTG | 60.407 | 57.143 | 0.00 | 0.00 | 0.00 | 3.02 |
616 | 647 | 0.035630 | AGCCTCACCTGACATCTTGC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
617 | 648 | 1.364626 | GCCTCACCTGACATCTTGCG | 61.365 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
618 | 649 | 1.364626 | CCTCACCTGACATCTTGCGC | 61.365 | 60.000 | 0.00 | 0.00 | 0.00 | 6.09 |
659 | 690 | 2.092968 | TCTTCCATCCTCGACCCATTTG | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
784 | 815 | 2.479049 | CCGACTCACCGTAATACCAGTG | 60.479 | 54.545 | 2.77 | 2.77 | 0.00 | 3.66 |
785 | 816 | 2.537401 | GACTCACCGTAATACCAGTGC | 58.463 | 52.381 | 4.01 | 0.00 | 0.00 | 4.40 |
786 | 817 | 2.165845 | GACTCACCGTAATACCAGTGCT | 59.834 | 50.000 | 4.01 | 0.00 | 0.00 | 4.40 |
787 | 818 | 2.165845 | ACTCACCGTAATACCAGTGCTC | 59.834 | 50.000 | 4.01 | 0.00 | 0.00 | 4.26 |
788 | 819 | 1.133598 | TCACCGTAATACCAGTGCTCG | 59.866 | 52.381 | 4.01 | 0.00 | 0.00 | 5.03 |
789 | 820 | 1.133598 | CACCGTAATACCAGTGCTCGA | 59.866 | 52.381 | 0.00 | 0.00 | 0.00 | 4.04 |
790 | 821 | 2.029623 | ACCGTAATACCAGTGCTCGAT | 58.970 | 47.619 | 0.00 | 0.00 | 0.00 | 3.59 |
791 | 822 | 2.034305 | ACCGTAATACCAGTGCTCGATC | 59.966 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
792 | 823 | 2.307929 | CGTAATACCAGTGCTCGATCG | 58.692 | 52.381 | 9.36 | 9.36 | 0.00 | 3.69 |
793 | 824 | 2.052157 | GTAATACCAGTGCTCGATCGC | 58.948 | 52.381 | 11.09 | 0.00 | 0.00 | 4.58 |
794 | 825 | 0.747255 | AATACCAGTGCTCGATCGCT | 59.253 | 50.000 | 11.09 | 0.00 | 0.00 | 4.93 |
795 | 826 | 0.312416 | ATACCAGTGCTCGATCGCTC | 59.688 | 55.000 | 11.09 | 4.82 | 0.00 | 5.03 |
884 | 931 | 1.071814 | CCGTTCGTTTTCCCTCCCA | 59.928 | 57.895 | 0.00 | 0.00 | 0.00 | 4.37 |
915 | 962 | 2.172293 | CTCCCTTGCATTTAGCCTCTCT | 59.828 | 50.000 | 0.00 | 0.00 | 44.83 | 3.10 |
1040 | 1093 | 2.498726 | CTCCTCTTCTCTGGGCGC | 59.501 | 66.667 | 0.00 | 0.00 | 0.00 | 6.53 |
1063 | 1116 | 1.620739 | ATGCATGAGGCTGTCGAGGT | 61.621 | 55.000 | 0.00 | 0.00 | 45.15 | 3.85 |
1067 | 1120 | 3.462678 | GAGGCTGTCGAGGTCCCC | 61.463 | 72.222 | 0.00 | 0.00 | 0.00 | 4.81 |
1221 | 1274 | 1.832167 | GAGGATCCAGGAGCTCGCT | 60.832 | 63.158 | 15.82 | 3.11 | 0.00 | 4.93 |
1752 | 1817 | 1.154016 | CGATCAGCGGTTCGACAGT | 60.154 | 57.895 | 11.24 | 0.00 | 38.25 | 3.55 |
2216 | 2299 | 2.025727 | CGATCACGACCGGTAGGC | 59.974 | 66.667 | 19.45 | 0.07 | 42.76 | 3.93 |
2293 | 2384 | 2.281276 | GACGGGCGGTGGTTTCTT | 60.281 | 61.111 | 1.11 | 0.00 | 0.00 | 2.52 |
2619 | 2714 | 9.837525 | GAACACGAAGAAAAAGAGTATAGTAGA | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2675 | 2771 | 2.156343 | GAAGTCCACGCACTTCTCTT | 57.844 | 50.000 | 12.87 | 0.00 | 46.11 | 2.85 |
2754 | 2851 | 2.675844 | GCTTATACATTCACACGGCACA | 59.324 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
2755 | 2852 | 3.242413 | GCTTATACATTCACACGGCACAG | 60.242 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
2798 | 2898 | 0.323629 | TGGCTTGTTTACGGGGAGAG | 59.676 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2800 | 2900 | 0.036294 | GCTTGTTTACGGGGAGAGCT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
3063 | 3181 | 3.414700 | GCTTGCGGAGTCACGGTG | 61.415 | 66.667 | 0.56 | 0.56 | 0.00 | 4.94 |
3091 | 3209 | 0.539051 | AGTGGTGATGTGAGGCTAGC | 59.461 | 55.000 | 6.04 | 6.04 | 0.00 | 3.42 |
3114 | 3232 | 7.575505 | AGCCTGTCGTACTATAGATATGGTAT | 58.424 | 38.462 | 6.78 | 0.00 | 33.24 | 2.73 |
3115 | 3233 | 8.712103 | AGCCTGTCGTACTATAGATATGGTATA | 58.288 | 37.037 | 6.78 | 0.00 | 33.24 | 1.47 |
3172 | 3295 | 1.745115 | GGCCGCATGTAACTCTGCA | 60.745 | 57.895 | 0.00 | 0.00 | 38.30 | 4.41 |
3213 | 3336 | 2.415983 | TCTCCAGTTCTCCCCTGAAA | 57.584 | 50.000 | 0.00 | 0.00 | 31.38 | 2.69 |
3250 | 3373 | 2.418368 | ACACGCATCTCTCTCTCTCT | 57.582 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3255 | 3378 | 3.062763 | CGCATCTCTCTCTCTCTCTCTC | 58.937 | 54.545 | 0.00 | 0.00 | 0.00 | 3.20 |
3256 | 3379 | 3.244009 | CGCATCTCTCTCTCTCTCTCTCT | 60.244 | 52.174 | 0.00 | 0.00 | 0.00 | 3.10 |
3257 | 3380 | 4.314121 | GCATCTCTCTCTCTCTCTCTCTC | 58.686 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
3258 | 3381 | 4.040217 | GCATCTCTCTCTCTCTCTCTCTCT | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3259 | 3382 | 5.782047 | CATCTCTCTCTCTCTCTCTCTCTC | 58.218 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3260 | 3383 | 5.136068 | TCTCTCTCTCTCTCTCTCTCTCT | 57.864 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
3261 | 3384 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3262 | 3385 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3263 | 3386 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3264 | 3387 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3265 | 3388 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3266 | 3389 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3267 | 3390 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3268 | 3391 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3269 | 3392 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3270 | 3393 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3271 | 3394 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3272 | 3395 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3273 | 3396 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3274 | 3397 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3275 | 3398 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3276 | 3399 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3277 | 3400 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3278 | 3401 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3279 | 3402 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3280 | 3403 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3281 | 3404 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3282 | 3405 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3283 | 3406 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3284 | 3407 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3285 | 3408 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3286 | 3409 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3287 | 3410 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3288 | 3411 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3289 | 3412 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3290 | 3413 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3291 | 3414 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3292 | 3415 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3293 | 3416 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3294 | 3417 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3295 | 3418 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3296 | 3419 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3297 | 3420 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3298 | 3421 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3299 | 3422 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3300 | 3423 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3301 | 3424 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3382 | 3505 | 6.477053 | TTCCTAGAGAAATGACAGGATGAG | 57.523 | 41.667 | 0.00 | 0.00 | 39.69 | 2.90 |
3399 | 3522 | 3.883830 | TGAGAGAGATTCCACTTCAGC | 57.116 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
3400 | 3523 | 3.168292 | TGAGAGAGATTCCACTTCAGCA | 58.832 | 45.455 | 0.00 | 0.00 | 0.00 | 4.41 |
3402 | 3525 | 4.040829 | TGAGAGAGATTCCACTTCAGCAAA | 59.959 | 41.667 | 0.00 | 0.00 | 0.00 | 3.68 |
3441 | 3567 | 7.065803 | CCATTATCTTAATGGCTAATGTACGGG | 59.934 | 40.741 | 12.11 | 0.00 | 40.51 | 5.28 |
3449 | 3575 | 1.858091 | CTAATGTACGGGAGCTGCTG | 58.142 | 55.000 | 13.21 | 13.21 | 0.00 | 4.41 |
3502 | 3628 | 5.298989 | TGGCTTTTCAGGTGTCTTTAGTA | 57.701 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
1 | 2 | 0.401395 | TCACCTCTCACCAACCCCTT | 60.401 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2 | 3 | 0.838122 | CTCACCTCTCACCAACCCCT | 60.838 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3 | 4 | 0.836400 | TCTCACCTCTCACCAACCCC | 60.836 | 60.000 | 0.00 | 0.00 | 0.00 | 4.95 |
6 | 7 | 0.959553 | TCGTCTCACCTCTCACCAAC | 59.040 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
7 | 8 | 1.202891 | TCTCGTCTCACCTCTCACCAA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
8 | 9 | 0.400594 | TCTCGTCTCACCTCTCACCA | 59.599 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
9 | 10 | 0.806241 | GTCTCGTCTCACCTCTCACC | 59.194 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
10 | 11 | 1.816074 | AGTCTCGTCTCACCTCTCAC | 58.184 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
11 | 12 | 3.916359 | ATAGTCTCGTCTCACCTCTCA | 57.084 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
12 | 13 | 4.212636 | GCTAATAGTCTCGTCTCACCTCTC | 59.787 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
13 | 14 | 4.131596 | GCTAATAGTCTCGTCTCACCTCT | 58.868 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
14 | 15 | 4.131596 | AGCTAATAGTCTCGTCTCACCTC | 58.868 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
15 | 16 | 4.159244 | AGCTAATAGTCTCGTCTCACCT | 57.841 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
16 | 17 | 4.904253 | AAGCTAATAGTCTCGTCTCACC | 57.096 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
17 | 18 | 5.744819 | GGAAAAGCTAATAGTCTCGTCTCAC | 59.255 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
18 | 19 | 5.652891 | AGGAAAAGCTAATAGTCTCGTCTCA | 59.347 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
19 | 20 | 6.139048 | AGGAAAAGCTAATAGTCTCGTCTC | 57.861 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
20 | 21 | 6.532988 | AAGGAAAAGCTAATAGTCTCGTCT | 57.467 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
21 | 22 | 7.435784 | CCTAAAGGAAAAGCTAATAGTCTCGTC | 59.564 | 40.741 | 0.00 | 0.00 | 37.39 | 4.20 |
22 | 23 | 7.123847 | TCCTAAAGGAAAAGCTAATAGTCTCGT | 59.876 | 37.037 | 0.00 | 0.00 | 42.18 | 4.18 |
23 | 24 | 7.490000 | TCCTAAAGGAAAAGCTAATAGTCTCG | 58.510 | 38.462 | 0.00 | 0.00 | 42.18 | 4.04 |
24 | 25 | 8.479689 | ACTCCTAAAGGAAAAGCTAATAGTCTC | 58.520 | 37.037 | 0.00 | 0.00 | 44.91 | 3.36 |
25 | 26 | 8.382058 | ACTCCTAAAGGAAAAGCTAATAGTCT | 57.618 | 34.615 | 0.00 | 0.00 | 44.91 | 3.24 |
26 | 27 | 9.752961 | CTACTCCTAAAGGAAAAGCTAATAGTC | 57.247 | 37.037 | 0.00 | 0.00 | 44.91 | 2.59 |
27 | 28 | 9.490083 | TCTACTCCTAAAGGAAAAGCTAATAGT | 57.510 | 33.333 | 0.00 | 0.00 | 44.91 | 2.12 |
28 | 29 | 9.974980 | CTCTACTCCTAAAGGAAAAGCTAATAG | 57.025 | 37.037 | 0.00 | 0.00 | 44.91 | 1.73 |
29 | 30 | 9.710818 | TCTCTACTCCTAAAGGAAAAGCTAATA | 57.289 | 33.333 | 0.00 | 0.00 | 44.91 | 0.98 |
30 | 31 | 8.611051 | TCTCTACTCCTAAAGGAAAAGCTAAT | 57.389 | 34.615 | 0.00 | 0.00 | 44.91 | 1.73 |
31 | 32 | 8.611051 | ATCTCTACTCCTAAAGGAAAAGCTAA | 57.389 | 34.615 | 0.00 | 0.00 | 44.91 | 3.09 |
32 | 33 | 8.611051 | AATCTCTACTCCTAAAGGAAAAGCTA | 57.389 | 34.615 | 0.00 | 0.00 | 44.91 | 3.32 |
33 | 34 | 7.503492 | AATCTCTACTCCTAAAGGAAAAGCT | 57.497 | 36.000 | 0.00 | 0.00 | 44.91 | 3.74 |
34 | 35 | 9.839817 | AATAATCTCTACTCCTAAAGGAAAAGC | 57.160 | 33.333 | 0.00 | 0.00 | 44.91 | 3.51 |
39 | 40 | 9.488762 | TGTCAAATAATCTCTACTCCTAAAGGA | 57.511 | 33.333 | 0.00 | 0.00 | 43.08 | 3.36 |
45 | 46 | 8.932610 | ACATGATGTCAAATAATCTCTACTCCT | 58.067 | 33.333 | 0.00 | 0.00 | 0.00 | 3.69 |
46 | 47 | 9.202273 | GACATGATGTCAAATAATCTCTACTCC | 57.798 | 37.037 | 19.96 | 0.00 | 46.22 | 3.85 |
68 | 69 | 3.895656 | AGTATACTACACATGGCCGACAT | 59.104 | 43.478 | 2.75 | 0.00 | 41.57 | 3.06 |
69 | 70 | 3.293337 | AGTATACTACACATGGCCGACA | 58.707 | 45.455 | 2.75 | 0.00 | 0.00 | 4.35 |
70 | 71 | 4.317671 | AAGTATACTACACATGGCCGAC | 57.682 | 45.455 | 5.65 | 0.00 | 0.00 | 4.79 |
71 | 72 | 4.689071 | CAAAGTATACTACACATGGCCGA | 58.311 | 43.478 | 5.65 | 0.00 | 0.00 | 5.54 |
72 | 73 | 3.247648 | GCAAAGTATACTACACATGGCCG | 59.752 | 47.826 | 5.65 | 0.00 | 0.00 | 6.13 |
73 | 74 | 4.451900 | AGCAAAGTATACTACACATGGCC | 58.548 | 43.478 | 5.65 | 0.00 | 0.00 | 5.36 |
74 | 75 | 6.436843 | AAAGCAAAGTATACTACACATGGC | 57.563 | 37.500 | 5.65 | 0.00 | 0.00 | 4.40 |
96 | 97 | 9.357652 | GGTTCAGTATCACGTGTATACTAAAAA | 57.642 | 33.333 | 26.14 | 20.41 | 37.93 | 1.94 |
97 | 98 | 8.522003 | TGGTTCAGTATCACGTGTATACTAAAA | 58.478 | 33.333 | 26.14 | 21.89 | 37.93 | 1.52 |
98 | 99 | 8.054152 | TGGTTCAGTATCACGTGTATACTAAA | 57.946 | 34.615 | 26.14 | 20.51 | 37.93 | 1.85 |
99 | 100 | 7.628769 | TGGTTCAGTATCACGTGTATACTAA | 57.371 | 36.000 | 26.14 | 17.34 | 37.93 | 2.24 |
100 | 101 | 7.628769 | TTGGTTCAGTATCACGTGTATACTA | 57.371 | 36.000 | 26.14 | 16.59 | 37.93 | 1.82 |
101 | 102 | 6.519679 | TTGGTTCAGTATCACGTGTATACT | 57.480 | 37.500 | 23.44 | 23.44 | 40.07 | 2.12 |
104 | 105 | 8.635328 | TGTATATTGGTTCAGTATCACGTGTAT | 58.365 | 33.333 | 16.51 | 10.27 | 0.00 | 2.29 |
105 | 106 | 7.998580 | TGTATATTGGTTCAGTATCACGTGTA | 58.001 | 34.615 | 16.51 | 4.61 | 0.00 | 2.90 |
106 | 107 | 6.869695 | TGTATATTGGTTCAGTATCACGTGT | 58.130 | 36.000 | 16.51 | 5.66 | 0.00 | 4.49 |
107 | 108 | 7.764695 | TTGTATATTGGTTCAGTATCACGTG | 57.235 | 36.000 | 9.94 | 9.94 | 0.00 | 4.49 |
108 | 109 | 9.472361 | GTATTGTATATTGGTTCAGTATCACGT | 57.528 | 33.333 | 0.00 | 0.00 | 0.00 | 4.49 |
109 | 110 | 8.922676 | GGTATTGTATATTGGTTCAGTATCACG | 58.077 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
110 | 111 | 9.772973 | TGGTATTGTATATTGGTTCAGTATCAC | 57.227 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
116 | 117 | 9.248291 | GCATTTTGGTATTGTATATTGGTTCAG | 57.752 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
117 | 118 | 8.753133 | TGCATTTTGGTATTGTATATTGGTTCA | 58.247 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
118 | 119 | 9.762933 | ATGCATTTTGGTATTGTATATTGGTTC | 57.237 | 29.630 | 0.00 | 0.00 | 0.00 | 3.62 |
159 | 165 | 4.411540 | AGATGGGAGCAGTGACATCTTATT | 59.588 | 41.667 | 11.75 | 0.00 | 45.57 | 1.40 |
160 | 166 | 3.972638 | AGATGGGAGCAGTGACATCTTAT | 59.027 | 43.478 | 11.75 | 0.00 | 45.57 | 1.73 |
165 | 171 | 3.110705 | AGTTAGATGGGAGCAGTGACAT | 58.889 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
172 | 178 | 1.208052 | GACTGCAGTTAGATGGGAGCA | 59.792 | 52.381 | 22.65 | 0.00 | 0.00 | 4.26 |
180 | 186 | 8.677148 | ATTTCAGTAAAAAGACTGCAGTTAGA | 57.323 | 30.769 | 22.65 | 5.98 | 45.44 | 2.10 |
239 | 246 | 2.095263 | CGCAATCGTCTTTTTCCATGGT | 60.095 | 45.455 | 12.58 | 0.00 | 0.00 | 3.55 |
241 | 248 | 3.125146 | TCTCGCAATCGTCTTTTTCCATG | 59.875 | 43.478 | 0.00 | 0.00 | 36.96 | 3.66 |
242 | 249 | 3.334691 | TCTCGCAATCGTCTTTTTCCAT | 58.665 | 40.909 | 0.00 | 0.00 | 36.96 | 3.41 |
243 | 250 | 2.761559 | TCTCGCAATCGTCTTTTTCCA | 58.238 | 42.857 | 0.00 | 0.00 | 36.96 | 3.53 |
245 | 252 | 6.359617 | TGAAATTTCTCGCAATCGTCTTTTTC | 59.640 | 34.615 | 18.64 | 0.00 | 36.96 | 2.29 |
246 | 253 | 6.205784 | TGAAATTTCTCGCAATCGTCTTTTT | 58.794 | 32.000 | 18.64 | 0.00 | 36.96 | 1.94 |
367 | 383 | 5.888724 | TGTTCATGGGTTGTAGTTTTCAGAA | 59.111 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
368 | 384 | 5.298276 | GTGTTCATGGGTTGTAGTTTTCAGA | 59.702 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
369 | 385 | 5.067153 | TGTGTTCATGGGTTGTAGTTTTCAG | 59.933 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
370 | 386 | 4.950475 | TGTGTTCATGGGTTGTAGTTTTCA | 59.050 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
371 | 387 | 5.163602 | TGTGTGTTCATGGGTTGTAGTTTTC | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
372 | 388 | 4.707448 | TGTGTGTTCATGGGTTGTAGTTTT | 59.293 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
373 | 389 | 4.274147 | TGTGTGTTCATGGGTTGTAGTTT | 58.726 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
374 | 390 | 3.892284 | TGTGTGTTCATGGGTTGTAGTT | 58.108 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
578 | 609 | 4.718774 | AGGCTCCAAGTGAATGAATAGAGA | 59.281 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
579 | 610 | 5.033589 | AGGCTCCAAGTGAATGAATAGAG | 57.966 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
580 | 611 | 4.471025 | TGAGGCTCCAAGTGAATGAATAGA | 59.529 | 41.667 | 12.86 | 0.00 | 0.00 | 1.98 |
581 | 612 | 4.574013 | GTGAGGCTCCAAGTGAATGAATAG | 59.426 | 45.833 | 12.86 | 0.00 | 0.00 | 1.73 |
582 | 613 | 4.517285 | GTGAGGCTCCAAGTGAATGAATA | 58.483 | 43.478 | 12.86 | 0.00 | 0.00 | 1.75 |
583 | 614 | 3.350833 | GTGAGGCTCCAAGTGAATGAAT | 58.649 | 45.455 | 12.86 | 0.00 | 0.00 | 2.57 |
584 | 615 | 2.553028 | GGTGAGGCTCCAAGTGAATGAA | 60.553 | 50.000 | 12.86 | 0.00 | 0.00 | 2.57 |
585 | 616 | 1.003580 | GGTGAGGCTCCAAGTGAATGA | 59.996 | 52.381 | 12.86 | 0.00 | 0.00 | 2.57 |
586 | 617 | 1.004044 | AGGTGAGGCTCCAAGTGAATG | 59.996 | 52.381 | 12.86 | 0.00 | 0.00 | 2.67 |
587 | 618 | 1.004044 | CAGGTGAGGCTCCAAGTGAAT | 59.996 | 52.381 | 12.86 | 0.00 | 0.00 | 2.57 |
588 | 619 | 0.397941 | CAGGTGAGGCTCCAAGTGAA | 59.602 | 55.000 | 12.86 | 0.00 | 0.00 | 3.18 |
589 | 620 | 0.471780 | TCAGGTGAGGCTCCAAGTGA | 60.472 | 55.000 | 12.86 | 6.93 | 0.00 | 3.41 |
590 | 621 | 0.321122 | GTCAGGTGAGGCTCCAAGTG | 60.321 | 60.000 | 12.86 | 4.56 | 0.00 | 3.16 |
591 | 622 | 0.764369 | TGTCAGGTGAGGCTCCAAGT | 60.764 | 55.000 | 12.86 | 0.00 | 0.00 | 3.16 |
592 | 623 | 0.617413 | ATGTCAGGTGAGGCTCCAAG | 59.383 | 55.000 | 12.86 | 0.00 | 0.00 | 3.61 |
593 | 624 | 0.615331 | GATGTCAGGTGAGGCTCCAA | 59.385 | 55.000 | 12.86 | 0.00 | 0.00 | 3.53 |
594 | 625 | 0.252421 | AGATGTCAGGTGAGGCTCCA | 60.252 | 55.000 | 12.86 | 1.35 | 0.00 | 3.86 |
595 | 626 | 0.908198 | AAGATGTCAGGTGAGGCTCC | 59.092 | 55.000 | 12.86 | 3.14 | 0.00 | 4.70 |
596 | 627 | 2.011046 | GCAAGATGTCAGGTGAGGCTC | 61.011 | 57.143 | 7.79 | 7.79 | 0.00 | 4.70 |
597 | 628 | 0.035630 | GCAAGATGTCAGGTGAGGCT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
598 | 629 | 1.364626 | CGCAAGATGTCAGGTGAGGC | 61.365 | 60.000 | 0.00 | 0.00 | 43.02 | 4.70 |
599 | 630 | 1.364626 | GCGCAAGATGTCAGGTGAGG | 61.365 | 60.000 | 0.30 | 0.00 | 43.02 | 3.86 |
600 | 631 | 0.390866 | AGCGCAAGATGTCAGGTGAG | 60.391 | 55.000 | 11.47 | 0.00 | 43.02 | 3.51 |
601 | 632 | 0.390340 | GAGCGCAAGATGTCAGGTGA | 60.390 | 55.000 | 11.47 | 0.00 | 43.02 | 4.02 |
602 | 633 | 1.364626 | GGAGCGCAAGATGTCAGGTG | 61.365 | 60.000 | 11.47 | 0.00 | 43.02 | 4.00 |
603 | 634 | 1.078848 | GGAGCGCAAGATGTCAGGT | 60.079 | 57.895 | 11.47 | 0.00 | 43.02 | 4.00 |
604 | 635 | 1.817099 | GGGAGCGCAAGATGTCAGG | 60.817 | 63.158 | 11.47 | 0.00 | 43.02 | 3.86 |
605 | 636 | 0.392193 | AAGGGAGCGCAAGATGTCAG | 60.392 | 55.000 | 11.47 | 0.00 | 43.02 | 3.51 |
606 | 637 | 0.036732 | AAAGGGAGCGCAAGATGTCA | 59.963 | 50.000 | 11.47 | 0.00 | 43.02 | 3.58 |
607 | 638 | 1.131315 | GAAAAGGGAGCGCAAGATGTC | 59.869 | 52.381 | 11.47 | 0.00 | 43.02 | 3.06 |
608 | 639 | 1.168714 | GAAAAGGGAGCGCAAGATGT | 58.831 | 50.000 | 11.47 | 0.00 | 43.02 | 3.06 |
609 | 640 | 1.399791 | GAGAAAAGGGAGCGCAAGATG | 59.600 | 52.381 | 11.47 | 0.00 | 43.02 | 2.90 |
610 | 641 | 1.743996 | GAGAAAAGGGAGCGCAAGAT | 58.256 | 50.000 | 11.47 | 0.00 | 43.02 | 2.40 |
611 | 642 | 0.670546 | CGAGAAAAGGGAGCGCAAGA | 60.671 | 55.000 | 11.47 | 0.00 | 43.02 | 3.02 |
612 | 643 | 0.951040 | ACGAGAAAAGGGAGCGCAAG | 60.951 | 55.000 | 11.47 | 0.00 | 43.44 | 4.01 |
613 | 644 | 0.534203 | AACGAGAAAAGGGAGCGCAA | 60.534 | 50.000 | 11.47 | 0.00 | 0.00 | 4.85 |
614 | 645 | 0.949105 | GAACGAGAAAAGGGAGCGCA | 60.949 | 55.000 | 11.47 | 0.00 | 0.00 | 6.09 |
615 | 646 | 0.670854 | AGAACGAGAAAAGGGAGCGC | 60.671 | 55.000 | 0.00 | 0.00 | 0.00 | 5.92 |
616 | 647 | 1.727335 | GAAGAACGAGAAAAGGGAGCG | 59.273 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 |
617 | 648 | 1.727335 | CGAAGAACGAGAAAAGGGAGC | 59.273 | 52.381 | 0.00 | 0.00 | 45.77 | 4.70 |
618 | 649 | 2.987821 | GACGAAGAACGAGAAAAGGGAG | 59.012 | 50.000 | 0.00 | 0.00 | 45.77 | 4.30 |
659 | 690 | 1.225854 | GCTCACTCGACGCAAATGC | 60.226 | 57.895 | 0.00 | 0.00 | 37.78 | 3.56 |
784 | 815 | 2.278206 | TGAAGCGAGCGATCGAGC | 60.278 | 61.111 | 29.29 | 19.70 | 34.64 | 5.03 |
785 | 816 | 2.282361 | CGTGAAGCGAGCGATCGAG | 61.282 | 63.158 | 29.29 | 10.29 | 44.77 | 4.04 |
786 | 817 | 2.277310 | CGTGAAGCGAGCGATCGA | 60.277 | 61.111 | 29.29 | 1.83 | 44.77 | 3.59 |
787 | 818 | 2.277310 | TCGTGAAGCGAGCGATCG | 60.277 | 61.111 | 20.40 | 20.40 | 45.68 | 3.69 |
884 | 931 | 2.009302 | GCAAGGGAGGGGAAGGGAT | 61.009 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
939 | 986 | 1.884075 | GACGGTTGGGAAAATGGCCC | 61.884 | 60.000 | 0.00 | 0.00 | 46.22 | 5.80 |
980 | 1027 | 0.667792 | GAGTCACTCACCGCAACCTC | 60.668 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1029 | 1082 | 4.161295 | CATCCGGCGCCCAGAGAA | 62.161 | 66.667 | 23.46 | 0.00 | 0.00 | 2.87 |
1040 | 1093 | 1.890979 | GACAGCCTCATGCATCCGG | 60.891 | 63.158 | 0.00 | 0.00 | 44.83 | 5.14 |
1044 | 1097 | 1.145598 | CCTCGACAGCCTCATGCAT | 59.854 | 57.895 | 0.00 | 0.00 | 44.83 | 3.96 |
1048 | 1101 | 2.060980 | GGGACCTCGACAGCCTCAT | 61.061 | 63.158 | 0.00 | 0.00 | 0.00 | 2.90 |
1200 | 1253 | 1.178534 | CGAGCTCCTGGATCCTCCTC | 61.179 | 65.000 | 14.23 | 9.85 | 37.46 | 3.71 |
1413 | 1478 | 4.814294 | ATGGACGAGAACGCCCGC | 62.814 | 66.667 | 0.00 | 0.00 | 44.73 | 6.13 |
1752 | 1817 | 2.135139 | GAGAACATGTTGAGCGACACA | 58.865 | 47.619 | 17.58 | 0.00 | 31.30 | 3.72 |
1899 | 1964 | 2.262915 | GCCTGTGACTCGTCCTGG | 59.737 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
2234 | 2322 | 4.530094 | GACATTGTGTCGAACAGTTTGA | 57.470 | 40.909 | 0.00 | 0.00 | 40.74 | 2.69 |
2554 | 2649 | 1.683707 | TGCTGCTGGATCTCGGAGT | 60.684 | 57.895 | 4.69 | 0.00 | 0.00 | 3.85 |
2649 | 2745 | 3.423154 | GCGTGGACTTCTTGCGGG | 61.423 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
2675 | 2771 | 1.907807 | GTTGGCCAAGCACATGGGA | 60.908 | 57.895 | 21.21 | 0.00 | 41.01 | 4.37 |
2754 | 2851 | 2.086054 | AAACGAGAGATTCTTGCGCT | 57.914 | 45.000 | 9.73 | 0.00 | 30.88 | 5.92 |
2755 | 2852 | 2.882742 | AAAACGAGAGATTCTTGCGC | 57.117 | 45.000 | 0.00 | 0.00 | 30.88 | 6.09 |
2798 | 2898 | 1.919600 | ATTGCACCCCTCCTCTCAGC | 61.920 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
2800 | 2900 | 1.565390 | CCATTGCACCCCTCCTCTCA | 61.565 | 60.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3063 | 3181 | 1.608590 | CACATCACCACTTTCCACCAC | 59.391 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
3114 | 3232 | 2.963782 | GGAGCGGATTCCCTCTACTTTA | 59.036 | 50.000 | 16.18 | 0.00 | 0.00 | 1.85 |
3115 | 3233 | 1.763545 | GGAGCGGATTCCCTCTACTTT | 59.236 | 52.381 | 16.18 | 0.00 | 0.00 | 2.66 |
3172 | 3295 | 7.013083 | GGAGATATTCTCATTGCTTGTTCATGT | 59.987 | 37.037 | 6.83 | 0.00 | 45.12 | 3.21 |
3234 | 3357 | 3.062763 | GAGAGAGAGAGAGAGAGATGCG | 58.937 | 54.545 | 0.00 | 0.00 | 0.00 | 4.73 |
3250 | 3373 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3255 | 3378 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3256 | 3379 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3257 | 3380 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3258 | 3381 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3259 | 3382 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3260 | 3383 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3261 | 3384 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3262 | 3385 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3263 | 3386 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3264 | 3387 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3265 | 3388 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3266 | 3389 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3267 | 3390 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3268 | 3391 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3269 | 3392 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3270 | 3393 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3271 | 3394 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3272 | 3395 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3273 | 3396 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3274 | 3397 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3275 | 3398 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3276 | 3399 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
3277 | 3400 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3278 | 3401 | 5.136068 | AGAGAGAGAGAGAGAGAGAGAGA | 57.864 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
3279 | 3402 | 4.892345 | TGAGAGAGAGAGAGAGAGAGAGAG | 59.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3280 | 3403 | 4.871822 | TGAGAGAGAGAGAGAGAGAGAGA | 58.128 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
3281 | 3404 | 5.604758 | TTGAGAGAGAGAGAGAGAGAGAG | 57.395 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
3282 | 3405 | 7.069344 | TCTATTGAGAGAGAGAGAGAGAGAGA | 58.931 | 42.308 | 0.00 | 0.00 | 0.00 | 3.10 |
3283 | 3406 | 7.295322 | TCTATTGAGAGAGAGAGAGAGAGAG | 57.705 | 44.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3284 | 3407 | 7.675161 | TTCTATTGAGAGAGAGAGAGAGAGA | 57.325 | 40.000 | 0.00 | 0.00 | 31.77 | 3.10 |
3285 | 3408 | 7.094890 | GCATTCTATTGAGAGAGAGAGAGAGAG | 60.095 | 44.444 | 0.00 | 0.00 | 31.77 | 3.20 |
3286 | 3409 | 6.712095 | GCATTCTATTGAGAGAGAGAGAGAGA | 59.288 | 42.308 | 0.00 | 0.00 | 31.77 | 3.10 |
3287 | 3410 | 6.487668 | TGCATTCTATTGAGAGAGAGAGAGAG | 59.512 | 42.308 | 0.00 | 0.00 | 31.77 | 3.20 |
3288 | 3411 | 6.363882 | TGCATTCTATTGAGAGAGAGAGAGA | 58.636 | 40.000 | 0.00 | 0.00 | 31.77 | 3.10 |
3289 | 3412 | 6.638096 | TGCATTCTATTGAGAGAGAGAGAG | 57.362 | 41.667 | 0.00 | 0.00 | 31.77 | 3.20 |
3290 | 3413 | 6.776603 | TGATGCATTCTATTGAGAGAGAGAGA | 59.223 | 38.462 | 0.00 | 0.00 | 31.77 | 3.10 |
3291 | 3414 | 6.983984 | TGATGCATTCTATTGAGAGAGAGAG | 58.016 | 40.000 | 0.00 | 0.00 | 31.77 | 3.20 |
3292 | 3415 | 6.517027 | GCTGATGCATTCTATTGAGAGAGAGA | 60.517 | 42.308 | 0.00 | 0.00 | 39.41 | 3.10 |
3293 | 3416 | 5.636121 | GCTGATGCATTCTATTGAGAGAGAG | 59.364 | 44.000 | 0.00 | 0.00 | 39.41 | 3.20 |
3294 | 3417 | 5.070047 | TGCTGATGCATTCTATTGAGAGAGA | 59.930 | 40.000 | 0.00 | 0.00 | 45.31 | 3.10 |
3295 | 3418 | 5.298347 | TGCTGATGCATTCTATTGAGAGAG | 58.702 | 41.667 | 0.00 | 0.00 | 45.31 | 3.20 |
3296 | 3419 | 5.286267 | TGCTGATGCATTCTATTGAGAGA | 57.714 | 39.130 | 0.00 | 0.00 | 45.31 | 3.10 |
3330 | 3453 | 4.438148 | CCTTCCGAAGAATCTTTCCTCTC | 58.562 | 47.826 | 9.87 | 0.00 | 0.00 | 3.20 |
3382 | 3505 | 5.638783 | CAATTTGCTGAAGTGGAATCTCTC | 58.361 | 41.667 | 0.00 | 0.00 | 29.96 | 3.20 |
3428 | 3554 | 0.880718 | GCAGCTCCCGTACATTAGCC | 60.881 | 60.000 | 6.69 | 0.00 | 35.54 | 3.93 |
3441 | 3567 | 5.613358 | TTAAGCTAAAAGTTCAGCAGCTC | 57.387 | 39.130 | 10.96 | 0.00 | 41.58 | 4.09 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.