Multiple sequence alignment - TraesCS3B01G399600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G399600 chr3B 100.000 2483 0 0 1 2483 630867996 630870478 0.000000e+00 4586.0
1 TraesCS3B01G399600 chr3B 100.000 568 0 0 2912 3479 630870907 630871474 0.000000e+00 1050.0
2 TraesCS3B01G399600 chr3D 92.992 2497 121 22 1 2481 474449732 474452190 0.000000e+00 3592.0
3 TraesCS3B01G399600 chr3D 90.545 550 42 7 2928 3476 474452246 474452786 0.000000e+00 719.0
4 TraesCS3B01G399600 chr3A 93.482 2102 101 15 403 2483 616727021 616724935 0.000000e+00 3090.0
5 TraesCS3B01G399600 chr3A 86.667 570 48 12 2912 3475 616724910 616724363 1.070000e-169 606.0
6 TraesCS3B01G399600 chr1A 81.526 1337 211 33 1139 2457 474432170 474430852 0.000000e+00 1068.0
7 TraesCS3B01G399600 chr1D 81.561 1307 214 26 1166 2457 375369492 375368198 0.000000e+00 1053.0
8 TraesCS3B01G399600 chr1D 88.571 70 7 1 194 263 224572704 224572772 2.230000e-12 84.2
9 TraesCS3B01G399600 chr1D 97.297 37 1 0 260 296 267338675 267338639 2.900000e-06 63.9
10 TraesCS3B01G399600 chr1B 80.766 1331 229 26 1139 2457 500539551 500540866 0.000000e+00 1014.0
11 TraesCS3B01G399600 chr1B 82.727 110 17 2 428 536 204636831 204636939 2.860000e-16 97.1
12 TraesCS3B01G399600 chr5B 85.246 122 16 2 417 536 233441435 233441556 1.310000e-24 124.0
13 TraesCS3B01G399600 chr5B 85.088 114 16 1 424 536 577240431 577240544 7.890000e-22 115.0
14 TraesCS3B01G399600 chr5B 100.000 28 0 0 373 400 227646818 227646845 6.000000e-03 52.8
15 TraesCS3B01G399600 chr5D 86.000 100 12 2 426 523 454798973 454798874 4.750000e-19 106.0
16 TraesCS3B01G399600 chr7B 84.158 101 15 1 423 522 304125865 304125965 2.860000e-16 97.1
17 TraesCS3B01G399600 chr5A 86.905 84 10 1 454 536 3178217 3178300 3.700000e-15 93.5
18 TraesCS3B01G399600 chr2D 83.333 96 15 1 426 520 635901695 635901600 1.720000e-13 87.9
19 TraesCS3B01G399600 chr2A 80.531 113 21 1 425 536 76516861 76516973 6.190000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G399600 chr3B 630867996 630871474 3478 False 2818.0 4586 100.0000 1 3479 2 chr3B.!!$F1 3478
1 TraesCS3B01G399600 chr3D 474449732 474452786 3054 False 2155.5 3592 91.7685 1 3476 2 chr3D.!!$F1 3475
2 TraesCS3B01G399600 chr3A 616724363 616727021 2658 True 1848.0 3090 90.0745 403 3475 2 chr3A.!!$R1 3072
3 TraesCS3B01G399600 chr1A 474430852 474432170 1318 True 1068.0 1068 81.5260 1139 2457 1 chr1A.!!$R1 1318
4 TraesCS3B01G399600 chr1D 375368198 375369492 1294 True 1053.0 1053 81.5610 1166 2457 1 chr1D.!!$R2 1291
5 TraesCS3B01G399600 chr1B 500539551 500540866 1315 False 1014.0 1014 80.7660 1139 2457 1 chr1B.!!$F2 1318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 1.065199 GGAGTCCCACAAGATGCATGA 60.065 52.381 2.46 0.0 0.00 3.07 F
103 104 1.089123 AGGGGCTTGGGGATTTTACA 58.911 50.000 0.00 0.0 0.00 2.41 F
381 393 1.699634 TGCCAATATGCTACTCCCTCC 59.300 52.381 0.00 0.0 0.00 4.30 F
1488 1526 0.907704 TGTTCCCTATGGACCGCACT 60.908 55.000 0.00 0.0 41.57 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1449 1487 1.003233 GTCCTTGGTCAGCCTGGTC 60.003 63.158 0.00 0.0 35.27 4.02 R
1476 1514 1.218047 GCTCACAGTGCGGTCCATA 59.782 57.895 0.00 0.0 0.00 2.74 R
1587 1625 1.671379 GAAGGAAGTGCCGTCCACC 60.671 63.158 9.17 0.0 45.83 4.61 R
2992 3045 1.295423 CACCTCGTCCCGAAATGGT 59.705 57.895 0.00 0.0 33.35 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.065199 GGAGTCCCACAAGATGCATGA 60.065 52.381 2.46 0.00 0.00 3.07
74 75 7.775120 ACCAGTGGATATGTTTTGATCATTTC 58.225 34.615 18.40 0.00 0.00 2.17
75 76 7.616935 ACCAGTGGATATGTTTTGATCATTTCT 59.383 33.333 18.40 0.00 0.00 2.52
76 77 8.133627 CCAGTGGATATGTTTTGATCATTTCTC 58.866 37.037 1.68 0.00 0.00 2.87
77 78 8.900781 CAGTGGATATGTTTTGATCATTTCTCT 58.099 33.333 0.00 0.00 0.00 3.10
78 79 9.471702 AGTGGATATGTTTTGATCATTTCTCTT 57.528 29.630 0.00 0.00 0.00 2.85
89 90 6.357367 TGATCATTTCTCTTACTAAAGGGGC 58.643 40.000 0.00 0.00 33.63 5.80
92 93 6.180472 TCATTTCTCTTACTAAAGGGGCTTG 58.820 40.000 0.00 0.00 33.63 4.01
99 100 1.722271 ACTAAAGGGGCTTGGGGATTT 59.278 47.619 0.00 0.00 0.00 2.17
103 104 1.089123 AGGGGCTTGGGGATTTTACA 58.911 50.000 0.00 0.00 0.00 2.41
255 267 9.509956 TTTCTTTGGTAAGCTAGTAAATGCTTA 57.490 29.630 3.68 3.68 46.19 3.09
359 371 9.791820 TTGCATTAATATGAACAGTCAAATCAG 57.208 29.630 0.00 0.00 37.30 2.90
363 375 5.824904 ATATGAACAGTCAAATCAGGTGC 57.175 39.130 0.00 0.00 37.30 5.01
380 392 2.551071 GGTGCCAATATGCTACTCCCTC 60.551 54.545 0.00 0.00 0.00 4.30
381 393 1.699634 TGCCAATATGCTACTCCCTCC 59.300 52.381 0.00 0.00 0.00 4.30
385 397 2.894126 CAATATGCTACTCCCTCCGTCT 59.106 50.000 0.00 0.00 0.00 4.18
413 425 9.820229 GAAATACTTATCAAACAAATCACGTGA 57.180 29.630 22.48 22.48 0.00 4.35
431 443 4.995487 ACGTGACAATTTTCTACTTCCTCC 59.005 41.667 0.00 0.00 0.00 4.30
436 448 4.041198 ACAATTTTCTACTTCCTCCGTCCA 59.959 41.667 0.00 0.00 0.00 4.02
437 449 3.955650 TTTTCTACTTCCTCCGTCCAG 57.044 47.619 0.00 0.00 0.00 3.86
442 454 4.094476 TCTACTTCCTCCGTCCAGAAATT 58.906 43.478 0.00 0.00 0.00 1.82
448 460 5.693769 TCCTCCGTCCAGAAATTCTTATT 57.306 39.130 0.00 0.00 0.00 1.40
504 516 7.582435 ATTAAAATACGTCTAGATGCATCCG 57.418 36.000 23.06 20.09 0.00 4.18
532 546 3.671433 CGACAAGTATTTCCGGACGAAGA 60.671 47.826 1.83 0.00 0.00 2.87
549 563 6.017192 GGACGAAGAGAGGGAGTAGTTATTAC 60.017 46.154 0.00 0.00 0.00 1.89
550 564 5.526846 ACGAAGAGAGGGAGTAGTTATTACG 59.473 44.000 0.00 0.00 37.35 3.18
551 565 5.049543 CGAAGAGAGGGAGTAGTTATTACGG 60.050 48.000 0.00 0.00 37.35 4.02
552 566 5.643421 AGAGAGGGAGTAGTTATTACGGA 57.357 43.478 0.00 0.00 37.35 4.69
602 617 6.476380 CGAATATTTTATGTGCAGCCAACAAT 59.524 34.615 0.00 0.00 0.00 2.71
618 633 4.142491 CCAACAATTTGGCTAACGCTGATA 60.142 41.667 0.78 0.00 46.09 2.15
636 651 5.012561 GCTGATACTCCTAATCACCATCCTT 59.987 44.000 0.00 0.00 30.38 3.36
688 704 2.412870 GAACATTTTCTTTTGGGGGCG 58.587 47.619 0.00 0.00 0.00 6.13
802 818 4.272489 CTGCCCAGAGAATATCCAAAACA 58.728 43.478 0.00 0.00 0.00 2.83
803 819 4.272489 TGCCCAGAGAATATCCAAAACAG 58.728 43.478 0.00 0.00 0.00 3.16
804 820 4.263905 TGCCCAGAGAATATCCAAAACAGT 60.264 41.667 0.00 0.00 0.00 3.55
811 827 9.307121 CAGAGAATATCCAAAACAGTAGTAGTG 57.693 37.037 3.30 3.30 0.00 2.74
976 1007 3.117372 CCATTAGCAGCAGCAGCC 58.883 61.111 6.10 0.00 45.49 4.85
1072 1107 2.043652 CCATTCTGCCCACCCAGG 60.044 66.667 0.00 0.00 33.64 4.45
1260 1295 4.530857 GACGTCCCCATGGCCTCG 62.531 72.222 6.09 12.23 0.00 4.63
1488 1526 0.907704 TGTTCCCTATGGACCGCACT 60.908 55.000 0.00 0.00 41.57 4.40
1630 1668 3.426615 CACTTTTATAACACCTGGGCCA 58.573 45.455 5.85 5.85 0.00 5.36
1686 1724 2.551912 CCGCCGCAACTTCTTTGGT 61.552 57.895 0.00 0.00 35.51 3.67
1842 1880 3.676605 TCGAGCGCCGGTCAAGAA 61.677 61.111 17.16 0.00 39.14 2.52
2397 2438 1.289066 CGTGGACATCGAGGTGTGT 59.711 57.895 7.79 0.00 31.16 3.72
2992 3045 1.452145 GCTTGGTGTGCGGGAAGAAA 61.452 55.000 0.00 0.00 0.00 2.52
3088 3145 2.317609 GCGACGCTTGCTGAAGGAA 61.318 57.895 13.73 0.00 0.00 3.36
3090 3147 0.586319 CGACGCTTGCTGAAGGAAAA 59.414 50.000 0.00 0.00 0.00 2.29
3092 3149 0.954452 ACGCTTGCTGAAGGAAAAGG 59.046 50.000 0.00 0.00 0.00 3.11
3093 3150 1.238439 CGCTTGCTGAAGGAAAAGGA 58.762 50.000 0.00 0.00 0.00 3.36
3108 3165 4.400567 GGAAAAGGAGATGGATTGTGGAAG 59.599 45.833 0.00 0.00 0.00 3.46
3160 3218 3.902261 TGATTGCACAGTGTTCATGAC 57.098 42.857 1.61 0.00 0.00 3.06
3198 3256 4.560128 GATGTACCGATGACATATGTGCT 58.440 43.478 14.43 0.00 37.65 4.40
3225 3283 4.584874 TCTTTCTTGGAAGACACACACAA 58.415 39.130 0.00 0.00 34.13 3.33
3230 3288 5.620206 TCTTGGAAGACACACACAATACAT 58.380 37.500 0.00 0.00 0.00 2.29
3231 3289 6.061441 TCTTGGAAGACACACACAATACATT 58.939 36.000 0.00 0.00 0.00 2.71
3232 3290 7.220740 TCTTGGAAGACACACACAATACATTA 58.779 34.615 0.00 0.00 0.00 1.90
3234 3292 9.161629 CTTGGAAGACACACACAATACATTATA 57.838 33.333 0.00 0.00 0.00 0.98
3235 3293 8.487313 TGGAAGACACACACAATACATTATAC 57.513 34.615 0.00 0.00 0.00 1.47
3236 3294 8.097662 TGGAAGACACACACAATACATTATACA 58.902 33.333 0.00 0.00 0.00 2.29
3237 3295 9.109393 GGAAGACACACACAATACATTATACAT 57.891 33.333 0.00 0.00 0.00 2.29
3284 3343 4.022762 CCTAATCGCACACTAGCTAGACAT 60.023 45.833 27.45 8.89 0.00 3.06
3294 3353 7.593273 GCACACTAGCTAGACATATTAAGACAG 59.407 40.741 27.45 0.00 0.00 3.51
3325 3384 3.648067 TCCTTGACACTCACTGAATTCCT 59.352 43.478 2.27 0.00 0.00 3.36
3330 3389 6.911250 TGACACTCACTGAATTCCTAGTAA 57.089 37.500 2.27 0.00 0.00 2.24
3331 3390 7.297936 TGACACTCACTGAATTCCTAGTAAA 57.702 36.000 2.27 0.00 0.00 2.01
3335 3394 5.245526 ACTCACTGAATTCCTAGTAAACGGT 59.754 40.000 2.27 0.00 0.00 4.83
3350 3409 7.274603 AGTAAACGGTGGCTTAACAAATAAA 57.725 32.000 0.00 0.00 0.00 1.40
3357 3416 5.163447 GGTGGCTTAACAAATAAATCCTCCC 60.163 44.000 0.00 0.00 30.86 4.30
3368 3427 1.570857 AATCCTCCCCATTCCGTGCA 61.571 55.000 0.00 0.00 0.00 4.57
3389 3448 5.178797 GCACTGTCCAGTAATGTACTTCAT 58.821 41.667 0.00 0.00 40.20 2.57
3440 3499 3.206150 ACATCTGTTTGAGCGTCAAGTT 58.794 40.909 1.72 0.00 37.70 2.66
3454 3513 3.841643 GTCAAGTTATTCCGGACGAAGA 58.158 45.455 1.83 0.00 32.78 2.87
3468 3527 7.999679 TCCGGACGAAGAAAGTATAAGATAAA 58.000 34.615 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.012673 GTCATGCATCTTGTGGGACTC 58.987 52.381 0.00 0.00 0.00 3.36
27 28 0.936297 CATCGAGCGATCGTCATGCA 60.936 55.000 23.61 2.14 31.62 3.96
33 34 1.064296 GGTCACATCGAGCGATCGT 59.936 57.895 23.61 7.67 31.62 3.73
44 45 5.569355 TCAAAACATATCCACTGGTCACAT 58.431 37.500 0.00 0.00 0.00 3.21
52 53 9.471702 AAGAGAAATGATCAAAACATATCCACT 57.528 29.630 0.00 0.00 0.00 4.00
74 75 2.092375 CCCCAAGCCCCTTTAGTAAGAG 60.092 54.545 0.00 0.00 32.92 2.85
75 76 1.920351 CCCCAAGCCCCTTTAGTAAGA 59.080 52.381 0.00 0.00 32.92 2.10
76 77 1.920351 TCCCCAAGCCCCTTTAGTAAG 59.080 52.381 0.00 0.00 0.00 2.34
77 78 2.062773 TCCCCAAGCCCCTTTAGTAA 57.937 50.000 0.00 0.00 0.00 2.24
78 79 2.296943 ATCCCCAAGCCCCTTTAGTA 57.703 50.000 0.00 0.00 0.00 1.82
89 90 6.405278 GGGTATGAATGTAAAATCCCCAAG 57.595 41.667 0.00 0.00 0.00 3.61
295 307 9.786105 AATGTTTGCCAAATTAAAACTTTCTTG 57.214 25.926 0.00 0.00 35.35 3.02
334 346 8.407832 CCTGATTTGACTGTTCATATTAATGCA 58.592 33.333 0.00 0.00 32.76 3.96
359 371 1.421646 AGGGAGTAGCATATTGGCACC 59.578 52.381 0.00 0.00 35.83 5.01
363 375 1.971357 ACGGAGGGAGTAGCATATTGG 59.029 52.381 0.00 0.00 0.00 3.16
413 425 4.041198 TGGACGGAGGAAGTAGAAAATTGT 59.959 41.667 0.00 0.00 0.00 2.71
481 493 6.509656 ACGGATGCATCTAGACGTATTTTAA 58.490 36.000 25.28 0.00 32.30 1.52
504 516 3.747529 TCCGGAAATACTTGTCGGAAAAC 59.252 43.478 0.00 0.00 45.40 2.43
532 546 7.757941 GTTATCCGTAATAACTACTCCCTCT 57.242 40.000 9.51 0.00 44.28 3.69
549 563 3.899052 TGGGGTGTTTCTAGTTATCCG 57.101 47.619 0.00 0.00 0.00 4.18
550 564 5.812286 TCTTTGGGGTGTTTCTAGTTATCC 58.188 41.667 0.00 0.00 0.00 2.59
551 565 6.473758 ACTCTTTGGGGTGTTTCTAGTTATC 58.526 40.000 0.00 0.00 0.00 1.75
552 566 6.449830 ACTCTTTGGGGTGTTTCTAGTTAT 57.550 37.500 0.00 0.00 0.00 1.89
560 574 2.721425 TCGAACTCTTTGGGGTGTTT 57.279 45.000 0.00 0.00 0.00 2.83
602 617 2.500098 AGGAGTATCAGCGTTAGCCAAA 59.500 45.455 0.00 0.00 46.67 3.28
618 633 4.785376 ACAGAAAGGATGGTGATTAGGAGT 59.215 41.667 0.00 0.00 0.00 3.85
672 688 1.266178 CTCCGCCCCCAAAAGAAAAT 58.734 50.000 0.00 0.00 0.00 1.82
688 704 0.250467 TTGTGCCAGTGAAGAGCTCC 60.250 55.000 10.93 0.00 0.00 4.70
700 716 1.685148 TGTGTGTTATGCTTGTGCCA 58.315 45.000 0.00 0.00 38.71 4.92
802 818 7.111466 CCTTCTCTACCAGTAACACTACTACT 58.889 42.308 0.00 0.00 36.14 2.57
803 819 6.883756 ACCTTCTCTACCAGTAACACTACTAC 59.116 42.308 0.00 0.00 36.14 2.73
804 820 7.025520 ACCTTCTCTACCAGTAACACTACTA 57.974 40.000 0.00 0.00 36.14 1.82
811 827 6.680872 GCATCAGTACCTTCTCTACCAGTAAC 60.681 46.154 0.00 0.00 0.00 2.50
858 874 4.038402 CGGTTTATATAGGACACGAAGGGT 59.962 45.833 0.00 0.00 0.00 4.34
913 929 1.152756 GAGGTGGTTTGGGCAGTGT 60.153 57.895 0.00 0.00 0.00 3.55
976 1007 1.421410 GCTGATCGGTTGCTACCACG 61.421 60.000 17.63 4.47 45.31 4.94
993 1024 1.226542 CATCTGAGCCATGGGTGCT 59.773 57.895 23.86 8.10 43.03 4.40
1260 1295 3.501548 ACGAGGAGCGAGACGAGC 61.502 66.667 0.00 0.00 44.57 5.03
1449 1487 1.003233 GTCCTTGGTCAGCCTGGTC 60.003 63.158 0.00 0.00 35.27 4.02
1476 1514 1.218047 GCTCACAGTGCGGTCCATA 59.782 57.895 0.00 0.00 0.00 2.74
1488 1526 2.283604 TGGCCCTCGTAGCTCACA 60.284 61.111 0.00 0.00 0.00 3.58
1587 1625 1.671379 GAAGGAAGTGCCGTCCACC 60.671 63.158 9.17 0.00 45.83 4.61
1599 1637 5.475564 GGTGTTATAAAAGTGCCAGAAGGAA 59.524 40.000 0.00 0.00 36.89 3.36
1686 1724 2.915659 AGGACGGCCGTTGACTCA 60.916 61.111 34.65 0.00 39.96 3.41
2088 2129 3.303135 TCGTTGGACGCCAGCTCT 61.303 61.111 10.06 0.00 42.21 4.09
2992 3045 1.295423 CACCTCGTCCCGAAATGGT 59.705 57.895 0.00 0.00 33.35 3.55
3088 3145 4.338879 CACTTCCACAATCCATCTCCTTT 58.661 43.478 0.00 0.00 0.00 3.11
3090 3147 2.240667 CCACTTCCACAATCCATCTCCT 59.759 50.000 0.00 0.00 0.00 3.69
3092 3149 3.356529 ACCACTTCCACAATCCATCTC 57.643 47.619 0.00 0.00 0.00 2.75
3093 3150 4.289672 AGTTACCACTTCCACAATCCATCT 59.710 41.667 0.00 0.00 0.00 2.90
3108 3165 5.766174 TCACAACCTTATTTCCAGTTACCAC 59.234 40.000 0.00 0.00 0.00 4.16
3160 3218 3.428746 ACATCGATCGACAAGGAGAAG 57.571 47.619 22.06 4.61 0.00 2.85
3188 3246 5.336213 CCAAGAAAGAAAGCAGCACATATGT 60.336 40.000 1.41 1.41 0.00 2.29
3198 3256 4.096382 GTGTGTCTTCCAAGAAAGAAAGCA 59.904 41.667 0.00 0.00 37.04 3.91
3225 3283 9.653287 GGTGTGCAGTATGTATGTATAATGTAT 57.347 33.333 0.00 0.00 39.31 2.29
3230 3288 5.989168 GCTGGTGTGCAGTATGTATGTATAA 59.011 40.000 0.00 0.00 39.31 0.98
3231 3289 5.538118 GCTGGTGTGCAGTATGTATGTATA 58.462 41.667 0.00 0.00 39.31 1.47
3232 3290 4.380531 GCTGGTGTGCAGTATGTATGTAT 58.619 43.478 0.00 0.00 39.31 2.29
3234 3292 2.632377 GCTGGTGTGCAGTATGTATGT 58.368 47.619 0.00 0.00 39.31 2.29
3235 3293 1.594397 CGCTGGTGTGCAGTATGTATG 59.406 52.381 0.00 0.00 39.31 2.39
3236 3294 1.939974 CGCTGGTGTGCAGTATGTAT 58.060 50.000 0.00 0.00 39.31 2.29
3237 3295 3.434258 CGCTGGTGTGCAGTATGTA 57.566 52.632 0.00 0.00 39.31 2.29
3238 3296 4.284123 CGCTGGTGTGCAGTATGT 57.716 55.556 0.00 0.00 39.31 2.29
3284 3343 8.915036 GTCAAGGATCTACTTCCTGTCTTAATA 58.085 37.037 0.00 0.00 45.63 0.98
3294 3353 4.464597 AGTGAGTGTCAAGGATCTACTTCC 59.535 45.833 0.00 0.00 35.90 3.46
3310 3369 5.577164 CCGTTTACTAGGAATTCAGTGAGTG 59.423 44.000 7.93 0.00 0.00 3.51
3325 3384 7.976135 TTATTTGTTAAGCCACCGTTTACTA 57.024 32.000 0.00 0.00 0.00 1.82
3330 3389 5.479027 AGGATTTATTTGTTAAGCCACCGTT 59.521 36.000 0.00 0.00 0.00 4.44
3331 3390 5.014202 AGGATTTATTTGTTAAGCCACCGT 58.986 37.500 0.00 0.00 0.00 4.83
3335 3394 4.959839 GGGGAGGATTTATTTGTTAAGCCA 59.040 41.667 0.00 0.00 0.00 4.75
3350 3409 2.000701 TGCACGGAATGGGGAGGAT 61.001 57.895 0.00 0.00 0.00 3.24
3357 3416 1.300971 CTGGACAGTGCACGGAATGG 61.301 60.000 24.13 7.02 0.00 3.16
3440 3499 7.572523 TCTTATACTTTCTTCGTCCGGAATA 57.427 36.000 5.23 0.00 33.26 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.