>input_sequence_50348
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-----------------------------------------------------------------------ATGGCTCAG
ATGCTCTCCGCCATGACCATGA---TGGACACCGTCCCCACCGCCCCCGCCATTCTGCCCACCCAGGCCATCTGCCTGGA
CGCGCCGGTGTCGGGCTCGGGCATCGCCGTACTGTCGAGGCAGGCCGTGCGCCCGGACGGCCCGCCGTCGGCGATCGGGG
ACCTCACGCTCTCCGTCTCCGACCTGCCCATGCTGTCCTGCCACTACATTCAGAAGGGCCTCTTCTTCCCCGCCCCCGAC
GTCCCCATGGCCTCGCTCGTCTCGCTCCTCGTGTCGTCGCTCTCCCGCGCGCTCGCCGTCTTCCCGGCCCTCGCCGGCCG
CTTCGTCACCCTCCCCGACGACCGCATCGTCATCCGCTGCA---ACGACGCCGGCGTCGAGTTCCACCACGCCGTGGCGC
CAGCCCTGTCGCTCAACGACTTCCTCGTGCCCAACGCCGACGTCCCGACCAGGCTGACCAAGGACCTGTTCCCTATGGAC
CGCACTGTGAGCTACGAGGGCCACCGCCGCCCTCTCACGTCGTTCCAGCTCACCGTGCTCGGCGATGGCGCCGTCTTCAT
CGGCATCGTCGCCAACCACGCCGTGGTGGACGGCACTTCCTTCTGGCACTTTTATAACACCTGGGCCACCCTTTGCCGCG
GTGCGTCGCCCAAGCTGCCGGACTTCCGCCGCAACTTCTTTGGTGAGTCAACGGCCGTCCTCCGCTTTGCCGGCGGCGTG
GGCCCCGCCGTGACCTTTGACGCGGACGCGCCTCTTCGCGAGAGAATCTTCCACTTCAGCAGGGACGCAATTCGCGAGCT
CAAGGCGATAGCCAACCGTCGGTCGAGCGCCGGTCAAGAAGCCGAGGTTTACGGCAAGATGGCGCATGACCCCAA---GA
ACCAGGAGGCGCGCAGCGAGATCTCGTCGTTCCAGTCACTGTGCGCGCAGATATGGATCTCGACGACGCGCGCGCGGAAG
CAGCTCGACGCCGGCGCCACGGCGACGCTGCGCCTGGCGGTGAACTGCCGCCACCGGCTGCGCCCGGCGATCTCCCCGGC
CTACTTCGGCAACGCCATCCAGAGCGCGCCGACGACGGCGACGGTGGCAGAGCTGGCGTCCAACGACCTGCGGTGGGCTG
CGTCCAGGTTGCACGCCAGCCTGGCGGCGTACGGGGACGAGGCGATACGCGGCGTCGCGGCGGCGTGGCAGGCGGCGCCC
CGGTGCTTCCCGCTTGGCAACCCGGACGGCGCGGTGGTGACGATGGGCAGCTCCAACCGGTTCCCGATGTACGAGGGCAA
CGACTTCGGGTGGGGCCGCCCCCTGGCGGTGCGCAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGG
GCCGCTCCGGCGACGGCAGCGTGGACATCGAGGTGTGTCTCGCCCCGGACACCATGGCGGCGCTGCTCCGCGACGACGAG
TTCATGCAGTACGTGTCGTGCCCGGCGCACCTGTTGTGA-----------------------------------------
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-----------------
>chr3B_1_TraesCS3B01G399600
AGAACCGGGTTGGGGAGTCCCACAAGATGCATGACGATCGCTCGATGTGACCAGTGGATATGTTTTGATCATTTCTCTTA
CTAAAGGGGCTTGGGGATTTTACATTCATAC----------CCCCCCCCCCTCTCAGTTTTTATTTTTTTTTCATCTATC
TTTGGTTTTTTGTCCAATGATTTTTTC-AAGCCGCTTTAACCGGCCCATCTTTTATTTGCTTTACCAAATAAAATTTTGT
TTTCTTTGGTAAGCTAGTAAATGCTTACCAAATAAAATTCTAGAATTTATTTGGTCAGATAAATCACAAGAAAGTTTTAA
TTTGGCAAACATTTATTTATAAAATTGCATTAATATGAACAGTCAAATCAGGTGCCAATATGCTACTCCCTCCGTCTAGA
AATACTTATCAAACAAATCACGTGACAATTTTCTACTTCCTCCGTCCAGAAATTCTTATTGAAGAAATGGATAAAAATTG
ATGTATTTAAAATTAAAATACGTCTAGATGCATCCG-TTTTCCG-ACAAGTATTTCCGGACGAAGAGAGGGAGTAGTTAT
TACGGATAACTAGAAACACC-CCAAAGAGTTCGAATATTTTATGTGCAGCCAACAATTTGGCTAACGCTGATACTCCTAA
TCACCATCCTT-TCTGTAATCAACATCCTTATTTTAAGAAATGGAACATTTTCTTTTGGGGGCGGAGCTCTTCACTGGCA
CAAGCATAACACACATATGTGGTTGTTCCTTTATCTGATTTGTGTATGTATCTCTGCATCAGACAACCACCAAACCTGCC
CAGAGAATATCCAAAACAGTAGTAGTGTTACTGGTAGAGAAGGTACTGATGCTCAGGTGCATGCATCCAGCACACCCTTC
GTGTCCTATATAAACCGCCCCAGCTTGCTCACTGTCCAGCACAAGGCAACACTGCCCAAACCACCTCCTTGGCCTCTAGC
TACT----GCCCAACGCGCCATTAGCAGCAGCAGC-----------CGTGGTAGCAACCGATCAG-CACCCATGGCTCAG
ATGCTCTCCGCCATGACCATGA---TGGACACCGTCCCCACCGCCCCCGCCATTCTGCCCACCCAGGCCATCTGCCTGGA
CGCGCCGGTGTCGGGCTCGGGCATCGCCGTACTGTCGAGGCAGGCCGTGCGCCCGGACGGCCCGCCGTCGGCGATCGGGG
ACCTCACGCTCTCCGTCTCCGACCTGCCCATGCTGTCCTGCCACTACATTCAGAAGGGCCTCTTCTTCCCCGCCCCCGAC
GTCCCCATGGCCTCGCTCGTCTCGCTCCTCGTGTCGTCGCTCTCCCGCGCGCTCGCCGTCTTCCCGGCCCTCGCCGGCCG
CTTCGTCACCCTCCCCGACGACCGCATCGTCATCCGCTGCA---ACGACGCCGGCGTCGAGTTCCACCACGCCGTGGCGC
CAGCCCTGTCGCTCAACGACTTCCTCGTGCCCAACGCCGACGTCCCGACCAGGCTGACCAAGGACCTGTTCCCTATGGAC
CGCACTGTGAGCTACGAGGGCCACCGCCGCCCTCTCACGTCGTTCCAGCTCACCGTGCTCGGCGATGGCGCCGTCTTCAT
CGGCATCGTCGCCAACCACGCCGTGGTGGACGGCACTTCCTTCTGGCACTTTTATAACACCTGGGCCACCCTTTGCCGCG
GTGCGTCGCCCAAGCTGCCGGACTTCCGCCGCAACTTCTTTGGTGAGTCAACGGCCGTCCTCCGCTTTGCCGGCGGCGTG
GGCCCCGCCGTGACCTTTGACGCGGACGCGCCTCTTCGCGAGAGAATCTTCCACTTCAGCAGGGACGCAATTCGCGAGCT
CAAGGCGATAGCCAACCGTCGGTCGAGCGCCGGTCAAGAAGCCGAGGTTTACGGCAAGATGGCGCATGACCCCAA---GA
ACCAGGAGGCGCGCAGCGAGATCTCGTCGTTCCAGTCACTGTGCGCGCAGATATGGATCTCGACGACGCGCGCGCGGAAG
CAGCTCGACGCCGGCGCCACGGCGACGCTGCGCCTGGCGGTGAACTGCCGCCACCGGCTGCGCCCGGCGATCTCCCCGGC
CTACTTCGGCAACGCCATCCAGAGCGCGCCGACGACGGCGACGGTGGCAGAGCTGGCGTCCAACGACCTGCGGTGGGCTG
CGTCCAGGTTGCACGCCAGCCTGGCGGCGTACGGGGACGAGGCGATACGCGGCGTCGCGGCGGCGTGGCAGGCGGCGCCC
CGGTGCTTCCCGCTTGGCAACCCGGACGGCGCGGTGGTGACGATGGGCAGCTCCAACCGGTTCCCGATGTACGAGGGCAA
CGACTTCGGGTGGGGCCGCCCCCTGGCGGTGCGCAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGG
GCCGCTCCGGCGACGGCAGCGTGGACATCGAGGTGTGTCTCGCCCCGGACACCATGGCGGCGCTGCTCCGCGACGACGAG
TTCATGCAGTACGTGTCGTGCCCGGCGCACCTGTTGTGATCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGCTCGG
GACCGTCCGTGCGT------------GCGCAAGTAGGGCCGCCATGACATGTCGTCAAGCTGCCTGCTTGGTGTGCGGGA
AGAAACCATTTCGGGACGAGGTGGTGCGCGCGGGCGGTGGGCCTAGCAGCACTCGTA----GTGCTTGGATTGACTAGTT
TAGGCAGCGACGCTTGCTGAAGGAAAAGGAGATGGATTGTGGAAGTGGTAAC-TGGAAATAAGGTTGTGAAAGTGTTTGA
TTGCACAGTGTTCATGACTTCTCCTTGTCGATCGATGTACCGATGACATATGTGCTGCTTTCTTTCTTGGAAGACACACA
CAATACATTATACATACA-TACTGCACACCAGCGCGTCTCCTAATCGCACACTAGCTAGACATATTAAGACAGGAAGTAG
ATCCTTGACACTCACTGAATTCCTAGTAAACGGTGGCTTAACAAATAAATCCTCCCCATTCCGTGCACTGTCCAGTAATG
TACTTCATTCGTTTCAAAACATAAAACATATGTGAATACATCTGTTTGAGCGTCAAGTTATTCCGGACGAAGAAAGTATA
AGATAAAACTAATGACC
>chr3D_1
AGAACCGGGTTGGGCAGTCCCACAAGACGCATGGCGATCGCTCGGTGTGACCGGTGGATATGTTTTGATCATTT-----A
CTAAAGGGGGTTTGGGATTCTACGTTCATACACCGCCCACCCCCTCCCCCCTCCCAGTATTTA---TTTTTTCATCTATC
TTTGGTTTTT-GTCCAATGATTTTTTTTAAGTCGCTTTAACCGGCCCATCTTTTATTTGCTTTACCAAATAAAATTTTGT
TTTCTTTGGTAAGCTAATAAATGCT-------------------ATTTATTTGGTAAGATAAATCATGAGAAAGTTTTTA
TTTGGCAAACATTTATTTATAAAGTCGCATTAATATGAACAGTCAAATCACGTGTCAATATGCTACTCCCTTTGTCCAGA
AATACTTATCAAACAAATCACGTGCCAATTTTCTACTCCCTCTGTCTGC-AATACTTATCAAAGAAATGGATAAAAAATG
ATGTATCTGAAACTAAAATGCGTCTAGATGCATCCA-TTTCCCTAACAAGTATTTCGGGACAAAGGGAGAGAGTAGTTAT
TATCAGTAACTAGGAACACCTCCAAAGAGTTCGAATATTTTATGTGCAGACAACAAATTGGCTAACGCTGATGCTCCTAA
TCACCATCCTAATCAGTAATCAGTATCCTTATTTTAAGAAATGGAACCTTTTCTTTTGGGGGCTGAGCTCTTCACAGGCA
CAAGCATAACACACAGATGTGGTTGTTCCTTTATCTGATTTGTGTATG--------CATCAGACAACCACCAAACCTGCC
CAGAGAATATCCAAAAC---AGTAGTATTACTGGTAGAGAAGGTACTGATGCTCAGGTGCATGCATCCAGCACCCCCTTC
GTGTCCTATATAAACCGCCCCAGCCTGCTCACTGTCCAGCACAAGGCAGCACTCCCCAAACCACCTCCTTGGCCTCTAGC
TACT----GCCCAACGCGCCATTAGCAGCAGCAGC-----------GGTGGTAGCAATCGGTCGAACACCCATGGCTCAG
ATGCTCTCCGCCATGACCATGA---TGGACACCGTCCCCACCGCCCCCGCCATTATGCCCGCCCAGCCCATCTGCCTGGA
CGCGCCGGTGTCGGGCTCGGGCATCGCCGTGCTGTCGAGGCAGGCCGTGCGCCCGGACGGCCCGCCGTCGGCGATCGGGG
ACCTCACGCTCTCCGTCTCCGACCTGCCCATGCTCTCCTGCCACTACATCCAGAAGGGCCTCTTCTTCCCCGCCCCCGAC
GTCCCCATGGCCTCCCTCGTCTCGCTCCTCGTCTCGTCGCTCTCCCGCGCGCTCGCCGTCTTCCCGGCCCTCGCCGGCCG
CTTCGTCACCCTCCCCGACGACCGCATCGTCATCCGCTGCA---ACGACGCCGGCGTCGAGTTCCATCACGCCGTGGCGC
CAGCCCTGTCGCTCAACGACTTCCTCGTGCCCAACGCCGACGTCCCCACCAGGCTCACCAAGGACCTGTTCCCCATGGAC
CGCACCGTGAGCTACGAGGGCCACCGCCGCCCTCTCACGTCCTTCCAGCTCACCGTGCTCGGCGATGGCGCCGTCTTCAT
CGGCGTCGTCGCCAACCACGCCGTCGTGGACGGCACCTCCTTCTGGCACTTTTACAACACCTGGGCCGCCCTCTGCCGCG
GCGCGTCGCCCAGGCTGCCGGACTTCCGCCGCAACTTCTTTGGCGAGTCAACGGCCGTCCTCCGCTTTGCCGGCGGCGTG
GGCCCCGCCGTGACCTTTGACGCGGACGCGCCTCTTCGCGAGAGAATCTTCCACTTCAGCAGGGACTCAATTCGCGAGCT
GAAGGCGATGGCCAACCGTCGGTCCAGCGCCGGTCAAGACGCCGAGGTTTACGGCAAGATGGCGCATGACCCCAACAAGA
ACCAGGAGGCGCGCGGCGAGATCTCGTCGTTCCAGTCGCTGTGCGCGCAGATATGGATCTCGACGACGCGCGCGCGGAAG
CAGCTCGACGCCGACGCCACGACGACGCTGCGCCTGGCGGTGAACTGCCGTCACCGGCTGCGCCCGGCGATCTCCCCGGC
CTACTTCGGCAACGCCATCCAGAGCGCGCCGACGACCGCGACGGTGGCGGAGCTGGCGTCCAACGGCCTGCGGTGGGCGG
CATCGAAGCTGCACGCGAGCCTGGCGGCGTACGGCGACGAGGCGATACGCGGCGCGGCCGCGGCGTGGCAGGCGGCGCCC
CGGTGCTTCCCGCTGGGCAACCCGGACGGCGCGGTGGTGACGATGGGCAGCTCCAACCGGTTCCCGATGTACGAGGGCAA
CGACTTCGGGTGGGGCCGCCCCCTGGCGGTGCGCAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGG
GCCGCTCCGGGGACGGCAGCGTGGACATCGAGGTGTGCCTCGCCCCCGACACGATGGCGGCGCTGCTCCGCGACGACGAG
TTCATGCAGTACGTGTCGTGCCCGGCGCACCTGTTGTGATCATCGATGTACCCCCCTACCGGTCAGTG------------
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-----------------------------------------------------------------------CGGGCTCGG
GACCGTCCGTGCGTGCGCGCGCGCGTGCGCGAGTAGGGCCGCCATGACATGTCGTCAAGCTGCCTGCTTGGTGTGCGGGA
AGAAGCCATTTCGGGACGAGGTGGTGCGCGCGGGCGGTGGGCCTGGT---ACTCGTA----GTGCTTGGAATGACTAGTT
TAGGCGGCGACGCTTGCTGAAGGAGATG--GATGGATTGTGAAACTGGTAACTTGGAAATAAGGTTGTGAAAGTGTTTGA
TTGCACAGTGTCCATGAGTTCTCCTTGTCGATCGATGTACCGATGGCATATGTGCGGCTTTCTTTCTTGGAAGACACACA
CAGTACAGACAT-----ACTACTGCGCACCAGCGCGCCTCCTAATCGCACACTAGCTAGACTGATTAAGACATGAAGTAG
ATCCTTGAGACTCACTGAATTCCCAGTATGCGGCGGCTTAACAAATAATTCCTCCTCACTCCGTGCGCAGTCCAGTAATG
TACTTCAGTCGTCTCAAAACATAAACCATACGTAGATACATCTGTTTGAACGTCAAGTCATTTCGGACGAAGGAAGTATA
AGATAAGACTAATG---
>chr3A_403
--------------------------------------------------------------------------------
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-------------CAAAACACGTGCCAATATGCTACTTCCTCTGTTCGAAAATACTTATCGAAGAAATGGATAAAAATTG
GATGTATGTAGAACAAAATACGTTCGGATACATTCATTTCTCCG-ACAAATATTTTCAAGCGGAGGGAGGAAGTAGTTCT
GGG-----------AACACC-CCAAAGAGTTGGAATATTTTATGTGCAGCCAACAAATTGGCTAACGCTGATGCTCCTAA
TCACCATCCTAATCTGTAATCAACATCCTTATTTTAAGAAATGGAACCTTTTCTTTTGGGGGCTGAACTCTTCACAGGCA
CAAGCATAACACACATATGCGGTAGCTCCTTTATCTGATTTGTGTATGTATCTCTGCATCAGACAAGCACCAAACCTGCC
CAGAGAATATCCAAAAC---AGTGGTATTACTGGTAGAGAAGGTACTGACGCTCAGGTGCATGCATCCAGCACCCCCTTG
GTGTGCTATATAAACCGCCCCAGCTCGCTCACTGTCCAGCACAAGGCAGCACTGCCCAAACCACCTCCTTGGCCTCTAGC
TAGCTACCGCCCAACGCGCCATTAGCAGCAGCAGCAGCGGTGGACCGGTGGTAGCAACCGATCGG-CACCCATGGCCCAG
ATGCTCTCCGCCATGACCATGACGATGGACACCGTCCCCACCGCCCCCGCCATTATGCCCGCCCAGCCCATCTGCCTGGA
CGCGCCGCTGTCGGGCTCGGGCATCGCCGTGCTGTCGAGGCAGGCCGTGCACCCGGACGGCCCGCCGTCGGCGCTCGGGG
ACCTCACGCTCTCCGTCTCCGACCTGCCCATGCTGTCCTGCCACTACATCCAGAAGGGCCTCTTCTTCCCCGCCCCCGAC
GTCCCCATGGCCTCCCTCGTCTCGCTCCTCGTCTCGTCGCTCTCCCGCGCGCTCGCCGTCTTCCCGGCCCTCGCCGGCCG
CTTCGTCACCCTCCCCGACGACCGCATCGTCATCCGATGCA---ACGACGCCGGCGTCGAGTTCCGCCACGCCGTGGCGC
CGGCCCTGTCGCTCAACGACTTCCTCGTGCCCAACGCCGACGTCCCCACCAGGCTGACCAAGGACCTGTTCCCCATGGAC
CGCACCGTGAGCTACGAGGGCCACCGCCGCCCTCTCACGTCGTTCCAGCTCACCGTGCTCGGCGATGGCGCCGTCTTCAT
CGGCATCGTCGCCAACCACGCCGTCGTGGACGGCACCTCCTTCTGGCACTTTTATAACACCTGGGCCGCCCTTTGCCGCG
GCGCGTCGCCCAGGCTGCCGGACTTCCGCCGCAACTTCTTTGGCGAGTCAACGGCCGTCCTTCGCTTTGCCGGCGGCGTG
GGCCCCGCCGTGACCTTTGACGCGGACGCGCCCCTTCGCGAGAGAATCTTCCACTTCAGCAGGGACGCAATTCGCGAGCT
GAAGGCGATAGCCAACCGTCGGTCGAGCGCCGGTCAAGATGCCGAGGTTTACGGCAAGATGGCGCACGACCCG---AAGA
ACCAGGAGGCCCGCGGCGAGATCTCGTCGTTCCAGTCACTGTGCGCGCAGATATGGATCTCGACGACGCGCGCGCGGAAG
CAGCTCGACGCCGACGCGACGACGACGCTACGCCTGGCGGTGAACTGCCGTCACCGGCTGCGCCCGGCGGTCTCCCCGGC
CTACTTCGGGAACGCCATCCAGAGCGCGCCGACGACGGCGACGGTGGCGGAGCTGGCGTCCAACGACCTGCGGTGGGCGG
CGTCGAGGCTGAACGCGAGCCTGGCGGCGTACGGCGACGAGGCGATACGCGGGGCCGCGGCGGCGTGGCAGGCGGCGCCC
CGGTGCTTCCCGCTGGGCAACCCGGACGGCGCGGTGGTGACGATGGGCAGCTCCAACCGGTTCCCGATGTACGAGGGCAA
CGACTTCGGGTGGGGCCGCCCCCTGGCGGTGCGCAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGG
GCCGCTCCGGGGACGACAGCGTGGACATCGAGGTGTGCCTCGCGCCGGACACGATGGCGGCGCTGCTCCGCGACGACGAG
TTCATGCAGTACGTGTCGTGCCCGGCGCACCTGTTGTGATCGATCGATGTA-CCCCTACCGGTCAGTG------------
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-----------------------------------------------------------------------CGGGCTCGC
GACCGTCCGTGCGTG--------CGTGCGCAAGTAGGGCCGCCATGACATGTCGTCAAGCTGCCTGGTTGGTGTGCGGGA
AGAAGCCATTTCGGGACGAGGTGGTGCGCGCGGGCGGTGGGCCTGGT---ACTCGTATGTAGTGCTTGGATTGACTAGTT
TAGGCAGCGACGTTTGCTGAAGGAGAT---GATGGATTGTGGAACTGGTAAC-TGAAAATAAGGTTGTGAAAGTGTTTGA
TTGCACAGTGTTCATGAGTTCTCCTTGTCGAT----GTACCGATGGCATATGTGTGGCTTTCT---------GACACACA
CAGTACAGACTT-----A-TACTGTACACCAGCGCGTCTCCTAATAGGACACTAGCTAGTCAGATTAAGACATGAAATAT
ATCCTTGAGACTCGCTAAATTCCCAGTATGCGGCGGCTTAACAAATAATTCCTCCTTATTCCGTGCGCTGTCCAGTAATG
TATTCCAGTCGTTTCAAAACATAAACCATATGTGAATACATCTATTTAAGCGTCAATTAATTCCGGATGAAGGAAGTATA
AGATAAGACTAAT----
>chr1A_1139
CCGGAGGGCGCG--------------------------------------------------------------------
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-------------------------------------------------------------------CCGCCGGTCGGAG
ACCTCAGGCTGTCCGTCTCCGACATGCCCATGCTGTCGTGCCACTACATTCAGAAGGGGCTCTTCTTCCCGCCCGCGGGC
ATGCCGAACGCCCGCCTCGTGTCGTCGCTCGCGCTGTCGCTCTCCCGCGCGCTCGGCGTCTTCCCGGCGCTCGCGGGACG
GCTCGTCACGCTCCCCGACGACCGCATCGTCATCCGGTGCGACGACGGCGCTGCCGTCGAGTTCTACCATGCCGTGGCGC
CCGCTCTGTCGCTCGCCGACTTCCTCGTGCGCGACGCCGACGTGCCCACCAGGCTGACGAAGGATCTGTTCCCGATGGAC
CGCACCGTCAGCTACGAAGGCCACCGCCGCCCGCTCACGTCGTTTCAGGTCACCGTGCTCGGCGACGGCGCTGTCTTCGT
CGGCCTCGTCGCCAACCACGCCGTCGTGGACGGCACCTCATTCTGGCACTTCTTCAACACGTGGGCTGGGCTGTGCCGTG
GCGAGCCAGTCCAGCCGCCGGACTTCAGCCGCAACTTCTTCGGCGGCTCCACGGCTGTCCTCCGCTTCTCCGGACGCGAC
GGCCCCGCGGTGACGTTCGACGCATCGGCGCCCCTCCGTGAGCGAGTCATCAACTTCAGCGCCGCGTCGATTCGCGGCCT
GAAGGCGGCGGCCAACCGCTGCAGAAAAAGCAACGAAGACGACGAGGTTAAAGGCAAGCTCGTGCATGATCTG---AAGG
TCCAGGGAGGCTGCGGGGAGATCTCCTCCTTCCAGTCGATGTGCGCGCACATGTGGAGGGCCGTGACGCGGGCGCGGCTG
CAGCTGGCCGCCGACGCGACGACAACGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGAAGATCTCCCCGGT
CTACTTCGGCAACGCGATCCAGAGCGTGGCGACGACGGCGACGGTGGCGGAGCTGGCGTCCCACGACCTCGGGTGGGCGG
CGGCCAGGCTGCACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGGAAGGCCGCGGCGGACTGGGAGGCGGCGCCC
CGGTGCTTCCCGCTGGGGAACCCCGACGGCGCGGCGCTCACCATGGGCAGCTCGCCGCGGTTCCCGATGTACGACGGCAA
CGACTTCGGCTGGGGCAGGGCGCTCGCGGTGCGGAGCGGGCGGGCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGG
GGCAGGCCGGGGACGGCAGCGTGGACGTGGAGGTGTGCCTCGCCCCGGACACCATGGGCCGCCTCCTGTGCGACGACGAG
TTCCTGCAGTTCGTGTC---------------------------------------------------------------
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-----------------
>chr1B_1139
CCGGAGGGCGCC--------------------------------------------------------------------
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-------------------------------------------------------------------TCGCCGGTTGGAG
ACCTCAAGCTGCCCGTCTCCGACATGCCTATGCTGTCGTGCCACTACATTCAGAAGGGGCTCTTCTTCCCGCCCGCGGGC
ATGCCGAACGCCCGCCTCGTGTCGTCGCTCGCGCTGTCACTGTCCCGCGCGCTCGGCGTCTTCCCGGCGCTCGCGGGACG
GCTCGTCACGCTCCCCGACGACCGCATCGTCATCCGGTGCGACGACGG---TGCCGTCGAGTTCTACCATGCGGTGGCGC
CCGCTCTGTCGCTCGCCGAGTTCCTCGTGCGCGACGCCGACGTGCCCACCAGGCTGACGAAAGATCTGTTTCCGATGGAC
CGCACCGTCAGCTACGAAGGCCACCGCCGCCCGCTCACGTCGTTTCAGGTCACGGTGCTCGGCGACGGCGCTGTCTTTGT
CGGCCTCGTCGCCAACCACGCTGTCGTGGACGGCACCTCATTCTGGCACTTCTTCAACACGTGGGCTGGGCTGTGCCGCG
GCGAGCCAGTCCAGCCGCCGGACTTCAGCCGCAACTTCTTTGGCGGCTCCACGGCCGTCCTCCGCTTCTCCGGGCGCGAC
GGCCCCGCAGTGACGTTCGACGCATCGGCGCCCCTCCGTGAGCGAGTCATCCACTTCAGCGCCGCGTCAATTCGCGGCCT
GAAGGCGGCGGCCAACCGCTGCAGAAAAACCAACGAAGATGACGAGGTTAACGGCAAGCTCGTGCATGATCTC---AAGG
TCCAGGGAGGTTGCGGGGAGATCTCCTCCTTCCAGTCGATGTGCGCGCACATGTGGAGGGCCGTGACGCGAGCGCGGCTG
CAGCTGGCCGCCGACGCGACGACAACGTTCCGCATGGCGGTGAACTGCCGTCACCGCCTGCGCCCGAAGATCTCCCCGGT
CTACTTCGGCAACGCCATCCAGAGCGTGGCGACGACGGCGACGGTGTCCGAGCTGGCTTCCCACGACCTCGGGTGGGCGG
CGGCCAAGCTGCACACGACCGTAGTGGCGCACGAGGACGGCGCCATCCGGCAGGCCGCGGCGGACTGGGAGGCGGCGCCC
CGGTGCTTCCCGCTGGGGAACCCCGACGGCGCGGCGCTCACCATGGGCAGCTCGCCGCGGTTCCCGATGTACGACGGCAA
CGACTTCGGCTGGGGCAGAGCGCTCGCCGTGCGGAGCGGCCGGGCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGG
GCCAGGCGGGGGACGGCAGCGTGGACGTGGAGGTGTGCCTCGCCCCGGACACCATGGGCCGCCTCCTCTGCGACGACGAG
TTCCTGCAGTTCGTGTC---------------------------------------------------------------
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-----------------
>chr1D_1166
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-------------------------------------------------------------------------------G
ACCTCAACCTGTCCGTCTCCGACATGCCCATGCTGTCGTGCCACTACATTCAGAAGGGTCTCTTCTTCCCGCCCGCGGGC
ATGCCGAATGCCCGCCTCGTGTCGTCGCTCGCGCTGTCACTGTCCCGCGCGCTCGGCGTCTTCCCGGCGCTCGCGGGACG
GCTCGTCACGCTCCCCGACGACCGCATCGTCATCCGGTGCGACGACGGCGCTGCCGTTGAGTTCTACCATGCGGTGGCGC
CCGCTCTGTCGCTCGCCGACTTCCTCGTGCGCGACGCCGACGTGCCCACCAGGCTGACGAAAGATCTGTTCCCGATGGAC
CGCACCGTCAGCTACGAAGGCCACCGCCGCCCGCTCACGTCGTTTCAGGTCACCGTGCTCGGCGACGGCGCTGTCTTTGT
CGGCCTCGTCGCCAACCACGCCGTCGTGGACGGCACCTCATTCTGGCACTTTTTCAACACGTGGGCTGGGCTGTGCCGCG
GCGAGCCAGTCCAGCCGCCGGACTTCAGCCGCAACTTCTTTGGCGGCTCCACGGCCGTCCTCCGCTTCTCCGGACGCGAC
GGCCCCGCAGTGACGTTCGACGCATCGGCGCCCCTCCGCGAGCGAGTCATCCACTTCAGCGCCGCGTCGATTCGCGGCCT
GAAGGCGGCGGCCAACCGCTGCAGAAAAACCAACGAAGATGACGAGGTTAACGGCAAGCTCGTGCATGATCTG---AAGG
TCCAGGGAGGTTGCGGAGAGATCTCCTCCTTCCAGTCGATGTGCGCGCACATGTGGAGGGCCGTGACGCGGGCGCGGCTG
CAGCTGGCCGCCGACGCTACGACAACGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGAAGATCTCCCCGGT
CTACTTCGGCAACGCCATCCAGAGCGTGGCAACGACGGCAACGGTGGCCGAGCTGGCTTCCCACGACCTCGGGTGGGCGG
CGGCCAGGCTGCACGCCACCGTGGTGGCGCACGAGGACGGCGCCATCCGGAAGGCCGCGGCGGACTGGGAGGCGGCGCCC
CGGTGCTTCCCGCTGGGGAACCCCGACGGCGCGGCGCTCACCATGGGCAGCTCCCCGCGGTTCCCGATGTACGACGGCAA
CGACTTCGGCTGGGGCAGGGCGCTCGCCGTGCGGAGCGGGCGGGCGAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGG
GCCAGGCCGGGGACGGCAGCGTGGACGTGGAGGTGTGCCTCGCCCCGGACACCATGGGCCGCCTCCTATGCGACGACGAG
TTCCTGCAGTTCGTGTC---------------------------------------------------------------
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-----------------
>SNPs
--------------S------------S-----S----------S-------S---------------------SSSSS-
---------S--S------S---S--------------------S--------S----S----SSS--------------
----------S---------------S----S------------------------------------------------
----------------S--------SSSSSSSSSSSSSSSSSSS-----------S----------SS----------S-
-----------------------S-S------------------------S---S----------------SS---S---
------------------------S-----------------S----SS----S-----S--------------------
--------S---S----------------------S-----------------------------S--------------
--SSSS-------S------------------------------------------S---------------S-------
----------S------------------------------------S---------------S-----------S----
--------------------------------------------------------------------------------
-----------------SSS------S----------------------------------------------S------
------------------------------------------------S-------------------------------
----------------------------------------------S----------------S----------------
------------------------------------------------------S-----S-----S-------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S--------------------------S------
-----S--------------------------------------------------------------------------
------------------------S-----------S------------------------------S------------
-S-----------------------------------------S------------------------------------
--------------------------------------------------------------------------------
S--------------------------------------S----------------------------------------
--------------S-----------------------------------------------------------------
-------------S-------S----------------------------S-----------------------------
------------------------------------------------S-----------------------------S-
--------S---------------------------------------------S-------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
----------S--------------------------S------------------------------------------
-------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
--------------------------------------------------------------------------------
----S---------------------------------------S-SSSS------------------------------
------------------------S-S-SS--------------S-----------------------------------
-----------------S---------------------------S---------S------------------------
--S----SSS-SSSSSS---------------------------------------------S---------S-------
--------S--------------S----SS---S--------------S------S----------S-------------
-------S-----------------S--------------------------------S-------------S-------
------S-------SSS
>forward_34
-------------GGAGTCCCACAAGATGCATGA----------------------------------------------
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>reverse_1487
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----------------------------------------------GACCAGGCTGACCAAGGAC---------------
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>forward_104
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----AGGGGCTTGGGGATTTTACA--------------------------------------------------------
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>reverse_1514
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-------------------------------------------------------------------------TATGGAC
CGCACTGTGAGC--------------------------------------------------------------------
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>forward_393
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----------------------------------------------------TGCCAATATGCTACTCCCTCC-------
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>reverse_1625
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------------------------GGTGGACGGCACTTCCTTC-------------------------------------
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>forward_1526
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------------------------------------------------------------------TGTTCCCTATGGAC
CGCACT--------------------------------------------------------------------------
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>reverse_3045
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----ACCATTTCGGGACGAGGTG---------------------------------------------------------
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-----------------
