Multiple sequence alignment - TraesCS3B01G394500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G394500 chr3B 100.000 3464 0 0 1 3464 621537184 621533721 0.000000e+00 6397.0
1 TraesCS3B01G394500 chr3B 91.456 316 23 4 1192 1505 550022926 550022613 6.870000e-117 431.0
2 TraesCS3B01G394500 chr3B 93.939 66 4 0 1089 1154 550022987 550022922 2.200000e-17 100.0
3 TraesCS3B01G394500 chr3B 91.803 61 2 3 2045 2102 720956536 720956596 7.970000e-12 82.4
4 TraesCS3B01G394500 chr3D 93.088 3096 103 32 1 3057 467476060 467473037 0.000000e+00 4429.0
5 TraesCS3B01G394500 chr3A 90.948 3071 130 57 1 3024 610043625 610040656 0.000000e+00 3995.0
6 TraesCS3B01G394500 chr2B 91.304 322 24 4 1186 1505 742766569 742766888 1.480000e-118 436.0
7 TraesCS3B01G394500 chr2B 96.364 55 2 0 1089 1143 742766506 742766560 1.320000e-14 91.6
8 TraesCS3B01G394500 chr2A 88.520 331 24 5 1186 1505 393708750 393709077 4.190000e-104 388.0
9 TraesCS3B01G394500 chr2A 95.714 70 3 0 1621 1690 4383074 4383005 2.830000e-21 113.0
10 TraesCS3B01G394500 chr2A 96.667 60 2 0 1089 1148 393708695 393708754 2.200000e-17 100.0
11 TraesCS3B01G394500 chr4A 89.615 260 24 3 1192 1450 690086269 690086012 9.270000e-86 327.0
12 TraesCS3B01G394500 chr4A 95.455 66 3 0 1089 1154 690086330 690086265 4.730000e-19 106.0
13 TraesCS3B01G394500 chr7D 95.714 70 3 0 1621 1690 602679634 602679703 2.830000e-21 113.0
14 TraesCS3B01G394500 chr5B 93.939 66 2 2 1621 1684 10522694 10522759 7.910000e-17 99.0
15 TraesCS3B01G394500 chr6D 92.424 66 5 0 1089 1154 124650348 124650283 1.020000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G394500 chr3B 621533721 621537184 3463 True 6397 6397 100.000 1 3464 1 chr3B.!!$R1 3463
1 TraesCS3B01G394500 chr3D 467473037 467476060 3023 True 4429 4429 93.088 1 3057 1 chr3D.!!$R1 3056
2 TraesCS3B01G394500 chr3A 610040656 610043625 2969 True 3995 3995 90.948 1 3024 1 chr3A.!!$R1 3023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
915 959 0.034896 AAGCGATCCAAGACACGGTT 59.965 50.0 0.0 0.0 40.58 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2879 2950 0.109781 CGTGCTTGAACAATTCCCCG 60.11 55.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.696051 GCATGTTGGATATGGGCGATATT 59.304 43.478 3.42 0.00 0.00 1.28
29 30 4.439153 GCATGTTGGATATGGGCGATATTG 60.439 45.833 3.42 0.00 0.00 1.90
31 32 4.323417 TGTTGGATATGGGCGATATTGTC 58.677 43.478 3.42 0.00 0.00 3.18
32 33 4.202409 TGTTGGATATGGGCGATATTGTCA 60.202 41.667 3.42 1.37 0.00 3.58
39 42 8.686334 GGATATGGGCGATATTGTCAAAATATT 58.314 33.333 3.42 0.00 0.00 1.28
148 156 7.222999 GGCTAAATCGGATTTCTTATATCGGAG 59.777 40.741 18.59 8.34 35.63 4.63
149 157 7.760340 GCTAAATCGGATTTCTTATATCGGAGT 59.240 37.037 18.59 0.00 35.63 3.85
152 160 9.640963 AAATCGGATTTCTTATATCGGAGTAAG 57.359 33.333 10.11 6.61 35.63 2.34
165 173 3.585732 TCGGAGTAAGGGGAACTCAAAAT 59.414 43.478 5.67 0.00 44.25 1.82
282 294 5.130350 CCCTTAATAATTTCCTTGGCGAGA 58.870 41.667 2.43 0.00 0.00 4.04
299 311 1.002792 GAGAAACAAGACCGGCACAAC 60.003 52.381 0.00 0.00 0.00 3.32
333 349 3.000078 CGATCGAGTCCGTTAATGGTTTG 60.000 47.826 10.26 7.55 37.05 2.93
337 353 0.169451 GTCCGTTAATGGTTTGCCCG 59.831 55.000 13.49 0.00 35.15 6.13
625 654 4.175337 ACCATCGCCATCCCCACG 62.175 66.667 0.00 0.00 0.00 4.94
666 695 2.990479 AGCCTGGCTTAACTCCCG 59.010 61.111 17.22 0.00 33.89 5.14
667 696 1.612442 AGCCTGGCTTAACTCCCGA 60.612 57.895 17.22 0.00 33.89 5.14
668 697 0.983378 AGCCTGGCTTAACTCCCGAT 60.983 55.000 17.22 0.00 33.89 4.18
669 698 0.107165 GCCTGGCTTAACTCCCGATT 60.107 55.000 12.43 0.00 0.00 3.34
670 699 1.140252 GCCTGGCTTAACTCCCGATTA 59.860 52.381 12.43 0.00 0.00 1.75
671 700 2.807108 GCCTGGCTTAACTCCCGATTAG 60.807 54.545 12.43 0.00 0.00 1.73
672 701 2.484889 CTGGCTTAACTCCCGATTAGC 58.515 52.381 0.00 0.00 0.00 3.09
673 702 2.103263 CTGGCTTAACTCCCGATTAGCT 59.897 50.000 0.00 0.00 0.00 3.32
674 703 3.302161 TGGCTTAACTCCCGATTAGCTA 58.698 45.455 0.00 0.00 0.00 3.32
675 704 3.321111 TGGCTTAACTCCCGATTAGCTAG 59.679 47.826 0.00 0.00 0.00 3.42
676 705 3.318886 GCTTAACTCCCGATTAGCTAGC 58.681 50.000 6.62 6.62 0.00 3.42
677 706 3.006003 GCTTAACTCCCGATTAGCTAGCT 59.994 47.826 23.12 23.12 0.00 3.32
678 707 4.217983 GCTTAACTCCCGATTAGCTAGCTA 59.782 45.833 20.67 20.67 0.00 3.32
679 708 5.105675 GCTTAACTCCCGATTAGCTAGCTAT 60.106 44.000 24.69 14.60 0.00 2.97
680 709 6.095160 GCTTAACTCCCGATTAGCTAGCTATA 59.905 42.308 24.69 15.51 0.00 1.31
681 710 7.362747 GCTTAACTCCCGATTAGCTAGCTATAA 60.363 40.741 24.69 13.66 0.00 0.98
687 716 4.634883 CCGATTAGCTAGCTATAACCGAGA 59.365 45.833 24.69 8.07 0.00 4.04
772 802 3.467226 GCCTAGCCCGTACCAGCA 61.467 66.667 4.73 0.00 0.00 4.41
908 938 1.896220 AACAGCAAAGCGATCCAAGA 58.104 45.000 0.00 0.00 0.00 3.02
915 959 0.034896 AAGCGATCCAAGACACGGTT 59.965 50.000 0.00 0.00 40.58 4.44
971 1018 0.714180 TTACTAGGTGGGAGGGAGCA 59.286 55.000 0.00 0.00 0.00 4.26
976 1023 2.747855 GTGGGAGGGAGCAAAGCG 60.748 66.667 0.00 0.00 0.00 4.68
982 1029 2.185310 GAGGGAGCAAAGCGAAGGGA 62.185 60.000 0.00 0.00 0.00 4.20
993 1040 1.971357 AGCGAAGGGAATACCATCGAT 59.029 47.619 13.90 3.12 44.23 3.59
996 1043 2.671351 CGAAGGGAATACCATCGATCGG 60.671 54.545 16.41 11.04 44.23 4.18
1227 1274 4.821589 CAGGCGTTCCTCCTCCGC 62.822 72.222 0.00 0.00 41.93 5.54
1230 1277 4.516195 GCGTTCCTCCTCCGCCTC 62.516 72.222 0.00 0.00 41.50 4.70
1342 1389 2.124819 CGAGCATCAAGGCTGGCT 60.125 61.111 0.00 0.00 45.99 4.75
1788 1835 2.262915 GTCCAGACCAGGCTGTCG 59.737 66.667 14.43 1.04 40.26 4.35
1812 1859 3.842923 CTGATGAGCCCGCGGACT 61.843 66.667 30.73 23.77 0.00 3.85
1827 1874 0.110486 GGACTGGGAAGACAAAGGCA 59.890 55.000 0.00 0.00 0.00 4.75
1911 1958 1.745864 GATGCAGCAGCTGAGCAGT 60.746 57.895 29.48 20.70 42.14 4.40
1917 1964 1.958205 GCAGCTGAGCAGTTCGTGT 60.958 57.895 20.43 0.00 0.00 4.49
1920 1967 1.300931 GCTGAGCAGTTCGTGTCCA 60.301 57.895 0.00 0.00 0.00 4.02
2130 2177 0.390860 AGATGTACGAGATGCTGCCC 59.609 55.000 0.00 0.00 0.00 5.36
2633 2687 1.913419 GGAGGGGTTGGTGTTAGATCA 59.087 52.381 0.00 0.00 0.00 2.92
2641 2695 2.126882 TGGTGTTAGATCATCAGGGGG 58.873 52.381 0.00 0.00 0.00 5.40
2675 2729 4.082679 GCGTTAGTAGCAGCTATAGTGGAT 60.083 45.833 5.14 0.00 34.19 3.41
2727 2787 7.430760 TTGAAAATTTGGAGGGAGAAAGAAA 57.569 32.000 0.00 0.00 0.00 2.52
2728 2788 7.430760 TGAAAATTTGGAGGGAGAAAGAAAA 57.569 32.000 0.00 0.00 0.00 2.29
2729 2789 7.856415 TGAAAATTTGGAGGGAGAAAGAAAAA 58.144 30.769 0.00 0.00 0.00 1.94
2879 2950 7.566709 ACACGATTGATTCTTTGAAATTTTGC 58.433 30.769 0.00 0.00 0.00 3.68
2885 2956 4.408182 TTCTTTGAAATTTTGCGGGGAA 57.592 36.364 0.00 0.00 0.00 3.97
2995 3067 2.415168 CGCCGTTGAACACATTGATACT 59.585 45.455 0.00 0.00 0.00 2.12
2997 3069 4.092237 CGCCGTTGAACACATTGATACTTA 59.908 41.667 0.00 0.00 0.00 2.24
3027 3108 0.179056 ATTCTACCCGCGGTGAATGG 60.179 55.000 26.37 14.42 36.19 3.16
3028 3109 2.862674 TTCTACCCGCGGTGAATGGC 62.863 60.000 26.12 0.00 36.19 4.40
3030 3111 2.869503 CTACCCGCGGTGAATGGCTT 62.870 60.000 26.12 0.29 36.19 4.35
3032 3113 1.525995 CCCGCGGTGAATGGCTTAT 60.526 57.895 26.12 0.00 0.00 1.73
3035 3116 0.304705 CGCGGTGAATGGCTTATGAC 59.695 55.000 0.00 0.00 0.00 3.06
3038 3119 1.331756 CGGTGAATGGCTTATGACTGC 59.668 52.381 0.00 0.00 0.00 4.40
3057 3138 4.517453 ACTGCGCCACAAGTAAAATTTCTA 59.483 37.500 4.18 0.00 0.00 2.10
3058 3139 4.789784 TGCGCCACAAGTAAAATTTCTAC 58.210 39.130 4.18 0.00 0.00 2.59
3059 3140 4.276183 TGCGCCACAAGTAAAATTTCTACA 59.724 37.500 4.18 0.00 0.00 2.74
3060 3141 4.615541 GCGCCACAAGTAAAATTTCTACAC 59.384 41.667 0.00 0.00 0.00 2.90
3061 3142 4.843984 CGCCACAAGTAAAATTTCTACACG 59.156 41.667 0.00 0.00 0.00 4.49
3062 3143 5.333492 CGCCACAAGTAAAATTTCTACACGA 60.333 40.000 0.00 0.00 0.00 4.35
3063 3144 6.608610 GCCACAAGTAAAATTTCTACACGAT 58.391 36.000 0.00 0.00 0.00 3.73
3064 3145 7.412129 CGCCACAAGTAAAATTTCTACACGATA 60.412 37.037 0.00 0.00 0.00 2.92
3065 3146 7.903431 GCCACAAGTAAAATTTCTACACGATAG 59.097 37.037 0.00 0.00 46.19 2.08
3066 3147 7.903431 CCACAAGTAAAATTTCTACACGATAGC 59.097 37.037 0.00 0.00 42.67 2.97
3067 3148 8.656849 CACAAGTAAAATTTCTACACGATAGCT 58.343 33.333 0.00 0.00 42.67 3.32
3068 3149 9.865321 ACAAGTAAAATTTCTACACGATAGCTA 57.135 29.630 0.00 0.00 42.67 3.32
3070 3151 8.576936 AGTAAAATTTCTACACGATAGCTAGC 57.423 34.615 6.62 6.62 42.67 3.42
3071 3152 8.414778 AGTAAAATTTCTACACGATAGCTAGCT 58.585 33.333 23.12 23.12 42.67 3.32
3072 3153 9.674824 GTAAAATTTCTACACGATAGCTAGCTA 57.325 33.333 26.09 26.09 42.67 3.32
3074 3155 8.749841 AAATTTCTACACGATAGCTAGCTATG 57.250 34.615 36.08 28.03 39.15 2.23
3075 3156 6.879276 TTTCTACACGATAGCTAGCTATGT 57.121 37.500 36.08 30.00 39.15 2.29
3076 3157 5.864628 TCTACACGATAGCTAGCTATGTG 57.135 43.478 35.33 35.33 39.15 3.21
3077 3158 5.306394 TCTACACGATAGCTAGCTATGTGT 58.694 41.667 38.83 38.83 44.00 3.72
3078 3159 6.461640 TCTACACGATAGCTAGCTATGTGTA 58.538 40.000 37.86 37.86 42.35 2.90
3079 3160 6.932960 TCTACACGATAGCTAGCTATGTGTAA 59.067 38.462 38.43 32.47 43.08 2.41
3080 3161 6.003234 ACACGATAGCTAGCTATGTGTAAG 57.997 41.667 37.97 27.56 42.35 2.34
3081 3162 4.854291 CACGATAGCTAGCTATGTGTAAGC 59.146 45.833 36.08 20.67 39.15 3.09
3083 3164 5.335269 ACGATAGCTAGCTATGTGTAAGCTG 60.335 44.000 36.08 18.94 45.72 4.24
3084 3165 7.463485 ACGATAGCTAGCTATGTGTAAGCTGA 61.463 42.308 36.08 9.62 45.72 4.26
3085 3166 9.374787 ACGATAGCTAGCTATGTGTAAGCTGAC 62.375 44.444 36.08 18.35 45.72 3.51
3091 3172 5.567138 GCTATGTGTAAGCTGACCAAATT 57.433 39.130 0.00 0.00 37.01 1.82
3092 3173 5.954335 GCTATGTGTAAGCTGACCAAATTT 58.046 37.500 0.00 0.00 37.01 1.82
3093 3174 5.801947 GCTATGTGTAAGCTGACCAAATTTG 59.198 40.000 11.40 11.40 37.01 2.32
3094 3175 3.976169 TGTGTAAGCTGACCAAATTTGC 58.024 40.909 12.92 0.85 0.00 3.68
3095 3176 3.243704 TGTGTAAGCTGACCAAATTTGCC 60.244 43.478 12.92 7.19 0.00 4.52
3096 3177 2.961741 TGTAAGCTGACCAAATTTGCCA 59.038 40.909 12.92 11.15 0.00 4.92
3097 3178 2.531522 AAGCTGACCAAATTTGCCAC 57.468 45.000 12.92 6.60 0.00 5.01
3098 3179 1.708341 AGCTGACCAAATTTGCCACT 58.292 45.000 12.92 9.35 0.00 4.00
3099 3180 2.041701 AGCTGACCAAATTTGCCACTT 58.958 42.857 12.92 0.02 0.00 3.16
3100 3181 2.137523 GCTGACCAAATTTGCCACTTG 58.862 47.619 12.92 0.66 0.00 3.16
3101 3182 2.758009 CTGACCAAATTTGCCACTTGG 58.242 47.619 12.92 0.37 44.35 3.61
3102 3183 1.415659 TGACCAAATTTGCCACTTGGG 59.584 47.619 12.92 0.00 43.30 4.12
3103 3184 1.416030 GACCAAATTTGCCACTTGGGT 59.584 47.619 12.92 2.45 43.30 4.51
3104 3185 2.630580 GACCAAATTTGCCACTTGGGTA 59.369 45.455 12.92 0.00 43.30 3.69
3105 3186 3.041946 ACCAAATTTGCCACTTGGGTAA 58.958 40.909 12.92 0.00 43.30 2.85
3106 3187 3.070878 ACCAAATTTGCCACTTGGGTAAG 59.929 43.478 12.92 0.00 42.56 2.34
3108 3189 4.282195 CCAAATTTGCCACTTGGGTAAGTA 59.718 41.667 12.92 0.00 45.12 2.24
3109 3190 5.221541 CCAAATTTGCCACTTGGGTAAGTAA 60.222 40.000 12.92 0.00 45.12 2.24
3110 3191 6.284459 CAAATTTGCCACTTGGGTAAGTAAA 58.716 36.000 5.01 0.00 45.12 2.01
3111 3192 6.680148 AATTTGCCACTTGGGTAAGTAAAT 57.320 33.333 0.00 0.00 45.12 1.40
3112 3193 6.680148 ATTTGCCACTTGGGTAAGTAAATT 57.320 33.333 0.00 0.00 45.12 1.82
3113 3194 6.487299 TTTGCCACTTGGGTAAGTAAATTT 57.513 33.333 0.00 0.00 45.12 1.82
3114 3195 5.461032 TGCCACTTGGGTAAGTAAATTTG 57.539 39.130 0.00 0.00 45.12 2.32
3115 3196 4.282195 TGCCACTTGGGTAAGTAAATTTGG 59.718 41.667 0.00 0.00 45.12 3.28
3116 3197 4.816392 CCACTTGGGTAAGTAAATTTGGC 58.184 43.478 0.00 0.00 45.12 4.52
3117 3198 4.322424 CCACTTGGGTAAGTAAATTTGGCC 60.322 45.833 0.00 0.00 45.12 5.36
3118 3199 3.508402 ACTTGGGTAAGTAAATTTGGCCG 59.492 43.478 0.00 0.00 45.07 6.13
3119 3200 2.448453 TGGGTAAGTAAATTTGGCCGG 58.552 47.619 0.00 0.00 0.00 6.13
3120 3201 2.041350 TGGGTAAGTAAATTTGGCCGGA 59.959 45.455 5.05 0.00 0.00 5.14
3121 3202 2.686405 GGGTAAGTAAATTTGGCCGGAG 59.314 50.000 5.05 0.00 0.00 4.63
3137 3218 2.898705 CGGAGGAGAAACAATCAGAGG 58.101 52.381 0.00 0.00 0.00 3.69
3138 3219 2.497675 CGGAGGAGAAACAATCAGAGGA 59.502 50.000 0.00 0.00 0.00 3.71
3139 3220 3.430098 CGGAGGAGAAACAATCAGAGGAG 60.430 52.174 0.00 0.00 0.00 3.69
3140 3221 3.118445 GGAGGAGAAACAATCAGAGGAGG 60.118 52.174 0.00 0.00 0.00 4.30
3141 3222 3.772025 GAGGAGAAACAATCAGAGGAGGA 59.228 47.826 0.00 0.00 0.00 3.71
3142 3223 4.171234 AGGAGAAACAATCAGAGGAGGAA 58.829 43.478 0.00 0.00 0.00 3.36
3143 3224 4.599241 AGGAGAAACAATCAGAGGAGGAAA 59.401 41.667 0.00 0.00 0.00 3.13
3144 3225 5.073691 AGGAGAAACAATCAGAGGAGGAAAA 59.926 40.000 0.00 0.00 0.00 2.29
3145 3226 5.770162 GGAGAAACAATCAGAGGAGGAAAAA 59.230 40.000 0.00 0.00 0.00 1.94
3162 3243 1.528129 AAAAGCTGGAGGAAGAAGCG 58.472 50.000 0.00 0.00 41.88 4.68
3163 3244 0.398318 AAAGCTGGAGGAAGAAGCGT 59.602 50.000 0.00 0.00 41.88 5.07
3164 3245 0.398318 AAGCTGGAGGAAGAAGCGTT 59.602 50.000 0.00 0.00 41.88 4.84
3165 3246 0.321122 AGCTGGAGGAAGAAGCGTTG 60.321 55.000 0.00 0.00 41.88 4.10
3166 3247 0.320771 GCTGGAGGAAGAAGCGTTGA 60.321 55.000 0.00 0.00 0.00 3.18
3167 3248 1.878102 GCTGGAGGAAGAAGCGTTGAA 60.878 52.381 0.00 0.00 0.00 2.69
3168 3249 2.704572 CTGGAGGAAGAAGCGTTGAAT 58.295 47.619 0.00 0.00 0.00 2.57
3169 3250 2.675348 CTGGAGGAAGAAGCGTTGAATC 59.325 50.000 0.00 0.00 0.00 2.52
3170 3251 2.303022 TGGAGGAAGAAGCGTTGAATCT 59.697 45.455 0.00 0.00 0.00 2.40
3171 3252 3.244561 TGGAGGAAGAAGCGTTGAATCTT 60.245 43.478 0.00 0.00 36.17 2.40
3172 3253 3.753797 GGAGGAAGAAGCGTTGAATCTTT 59.246 43.478 0.00 0.00 33.73 2.52
3173 3254 4.935808 GGAGGAAGAAGCGTTGAATCTTTA 59.064 41.667 0.00 0.00 33.73 1.85
3174 3255 5.586643 GGAGGAAGAAGCGTTGAATCTTTAT 59.413 40.000 0.00 0.00 33.73 1.40
3175 3256 6.094186 GGAGGAAGAAGCGTTGAATCTTTATT 59.906 38.462 0.00 0.00 33.73 1.40
3176 3257 7.362142 GGAGGAAGAAGCGTTGAATCTTTATTT 60.362 37.037 0.00 0.00 33.73 1.40
3177 3258 8.561738 AGGAAGAAGCGTTGAATCTTTATTTA 57.438 30.769 0.00 0.00 33.73 1.40
3178 3259 9.010029 AGGAAGAAGCGTTGAATCTTTATTTAA 57.990 29.630 0.00 0.00 33.73 1.52
3179 3260 9.788960 GGAAGAAGCGTTGAATCTTTATTTAAT 57.211 29.630 0.00 0.00 33.73 1.40
3199 3280 7.825331 TTAATCTAATGATCCAGAGACGACT 57.175 36.000 0.00 0.00 31.51 4.18
3200 3281 8.919777 TTAATCTAATGATCCAGAGACGACTA 57.080 34.615 0.00 0.00 31.51 2.59
3201 3282 6.811253 ATCTAATGATCCAGAGACGACTAC 57.189 41.667 0.00 0.00 0.00 2.73
3202 3283 5.681639 TCTAATGATCCAGAGACGACTACA 58.318 41.667 0.00 0.00 0.00 2.74
3203 3284 6.299922 TCTAATGATCCAGAGACGACTACAT 58.700 40.000 0.00 0.00 0.00 2.29
3204 3285 4.844998 ATGATCCAGAGACGACTACATG 57.155 45.455 0.00 0.00 0.00 3.21
3205 3286 2.359214 TGATCCAGAGACGACTACATGC 59.641 50.000 0.00 0.00 0.00 4.06
3206 3287 1.834188 TCCAGAGACGACTACATGCA 58.166 50.000 0.00 0.00 0.00 3.96
3207 3288 2.379005 TCCAGAGACGACTACATGCAT 58.621 47.619 0.00 0.00 0.00 3.96
3208 3289 2.359214 TCCAGAGACGACTACATGCATC 59.641 50.000 0.00 0.00 0.00 3.91
3209 3290 2.099756 CCAGAGACGACTACATGCATCA 59.900 50.000 0.00 0.00 0.00 3.07
3210 3291 3.243670 CCAGAGACGACTACATGCATCAT 60.244 47.826 0.00 0.00 0.00 2.45
3211 3292 4.366586 CAGAGACGACTACATGCATCATT 58.633 43.478 0.00 0.00 0.00 2.57
3212 3293 4.807834 CAGAGACGACTACATGCATCATTT 59.192 41.667 0.00 0.00 0.00 2.32
3213 3294 5.292834 CAGAGACGACTACATGCATCATTTT 59.707 40.000 0.00 0.00 0.00 1.82
3214 3295 5.521735 AGAGACGACTACATGCATCATTTTC 59.478 40.000 0.00 0.00 0.00 2.29
3215 3296 5.178061 AGACGACTACATGCATCATTTTCA 58.822 37.500 0.00 0.00 0.00 2.69
3216 3297 5.819379 AGACGACTACATGCATCATTTTCAT 59.181 36.000 0.00 0.00 0.00 2.57
3217 3298 5.813717 ACGACTACATGCATCATTTTCATG 58.186 37.500 0.00 0.00 42.27 3.07
3218 3299 4.673761 CGACTACATGCATCATTTTCATGC 59.326 41.667 0.00 0.00 45.92 4.06
3225 3306 3.703420 GCATCATTTTCATGCAGAGGAC 58.297 45.455 0.00 0.00 45.19 3.85
3226 3307 3.129813 GCATCATTTTCATGCAGAGGACA 59.870 43.478 0.00 0.00 45.19 4.02
3227 3308 4.733815 GCATCATTTTCATGCAGAGGACAG 60.734 45.833 0.00 0.00 45.19 3.51
3228 3309 3.349927 TCATTTTCATGCAGAGGACAGG 58.650 45.455 0.00 0.00 0.00 4.00
3229 3310 2.205022 TTTTCATGCAGAGGACAGGG 57.795 50.000 0.00 0.00 0.00 4.45
3230 3311 1.361204 TTTCATGCAGAGGACAGGGA 58.639 50.000 0.00 0.00 0.00 4.20
3231 3312 1.361204 TTCATGCAGAGGACAGGGAA 58.639 50.000 0.00 0.00 0.00 3.97
3232 3313 1.361204 TCATGCAGAGGACAGGGAAA 58.639 50.000 0.00 0.00 0.00 3.13
3233 3314 1.704628 TCATGCAGAGGACAGGGAAAA 59.295 47.619 0.00 0.00 0.00 2.29
3234 3315 1.815003 CATGCAGAGGACAGGGAAAAC 59.185 52.381 0.00 0.00 0.00 2.43
3235 3316 0.110486 TGCAGAGGACAGGGAAAACC 59.890 55.000 0.00 0.00 40.67 3.27
3236 3317 0.609406 GCAGAGGACAGGGAAAACCC 60.609 60.000 0.00 0.00 41.63 4.11
3237 3318 1.068121 CAGAGGACAGGGAAAACCCT 58.932 55.000 1.53 1.53 41.63 4.34
3238 3319 1.425448 CAGAGGACAGGGAAAACCCTT 59.575 52.381 4.95 0.00 41.63 3.95
3239 3320 1.705745 AGAGGACAGGGAAAACCCTTC 59.294 52.381 4.95 6.93 41.63 3.46
3240 3321 1.705745 GAGGACAGGGAAAACCCTTCT 59.294 52.381 4.95 4.06 41.63 2.85
3241 3322 2.108425 GAGGACAGGGAAAACCCTTCTT 59.892 50.000 4.95 3.98 41.63 2.52
3242 3323 2.518407 AGGACAGGGAAAACCCTTCTTT 59.482 45.455 4.95 0.00 41.63 2.52
3243 3324 3.052109 AGGACAGGGAAAACCCTTCTTTT 60.052 43.478 4.95 0.00 41.63 2.27
3244 3325 3.709653 GGACAGGGAAAACCCTTCTTTTT 59.290 43.478 4.95 0.00 41.63 1.94
3245 3326 4.442893 GGACAGGGAAAACCCTTCTTTTTG 60.443 45.833 4.95 0.00 41.63 2.44
3246 3327 4.358214 ACAGGGAAAACCCTTCTTTTTGA 58.642 39.130 4.95 0.00 41.63 2.69
3247 3328 4.780554 ACAGGGAAAACCCTTCTTTTTGAA 59.219 37.500 4.95 0.00 41.63 2.69
3278 3359 7.938140 AAAATCTAATGGTCCAGAAAATCGA 57.062 32.000 0.00 0.00 0.00 3.59
3279 3360 6.927294 AATCTAATGGTCCAGAAAATCGAC 57.073 37.500 0.00 0.00 0.00 4.20
3280 3361 5.677319 TCTAATGGTCCAGAAAATCGACT 57.323 39.130 0.00 0.00 0.00 4.18
3281 3362 6.049955 TCTAATGGTCCAGAAAATCGACTT 57.950 37.500 0.00 0.00 0.00 3.01
3282 3363 6.472887 TCTAATGGTCCAGAAAATCGACTTT 58.527 36.000 0.00 0.00 0.00 2.66
3283 3364 7.617225 TCTAATGGTCCAGAAAATCGACTTTA 58.383 34.615 0.00 0.00 0.00 1.85
3284 3365 6.496338 AATGGTCCAGAAAATCGACTTTAC 57.504 37.500 0.00 0.00 0.00 2.01
3285 3366 4.320870 TGGTCCAGAAAATCGACTTTACC 58.679 43.478 2.77 2.77 0.00 2.85
3286 3367 3.688185 GGTCCAGAAAATCGACTTTACCC 59.312 47.826 0.00 0.00 0.00 3.69
3287 3368 4.320870 GTCCAGAAAATCGACTTTACCCA 58.679 43.478 0.00 0.00 0.00 4.51
3288 3369 4.758165 GTCCAGAAAATCGACTTTACCCAA 59.242 41.667 0.00 0.00 0.00 4.12
3289 3370 5.239963 GTCCAGAAAATCGACTTTACCCAAA 59.760 40.000 0.00 0.00 0.00 3.28
3290 3371 5.828859 TCCAGAAAATCGACTTTACCCAAAA 59.171 36.000 0.00 0.00 0.00 2.44
3291 3372 6.492087 TCCAGAAAATCGACTTTACCCAAAAT 59.508 34.615 0.00 0.00 0.00 1.82
3292 3373 7.666388 TCCAGAAAATCGACTTTACCCAAAATA 59.334 33.333 0.00 0.00 0.00 1.40
3293 3374 8.301002 CCAGAAAATCGACTTTACCCAAAATAA 58.699 33.333 0.00 0.00 0.00 1.40
3294 3375 9.855021 CAGAAAATCGACTTTACCCAAAATAAT 57.145 29.630 0.00 0.00 0.00 1.28
3304 3385 8.716909 ACTTTACCCAAAATAATTTTTCATGCG 58.283 29.630 0.00 0.00 32.72 4.73
3305 3386 8.833231 TTTACCCAAAATAATTTTTCATGCGA 57.167 26.923 0.00 0.00 32.72 5.10
3306 3387 6.720012 ACCCAAAATAATTTTTCATGCGAC 57.280 33.333 0.00 0.00 32.72 5.19
3307 3388 6.463360 ACCCAAAATAATTTTTCATGCGACT 58.537 32.000 0.00 0.00 32.72 4.18
3308 3389 6.934083 ACCCAAAATAATTTTTCATGCGACTT 59.066 30.769 0.00 0.00 32.72 3.01
3309 3390 8.091449 ACCCAAAATAATTTTTCATGCGACTTA 58.909 29.630 0.00 0.00 32.72 2.24
3310 3391 9.097257 CCCAAAATAATTTTTCATGCGACTTAT 57.903 29.630 0.00 0.00 32.72 1.73
3311 3392 9.904647 CCAAAATAATTTTTCATGCGACTTATG 57.095 29.630 0.00 0.00 32.72 1.90
3318 3399 6.539649 TTTTCATGCGACTTATGTATAGCC 57.460 37.500 0.00 0.00 0.00 3.93
3319 3400 3.833442 TCATGCGACTTATGTATAGCCG 58.167 45.455 0.00 0.00 0.00 5.52
3320 3401 2.717580 TGCGACTTATGTATAGCCGG 57.282 50.000 0.00 0.00 0.00 6.13
3321 3402 1.958579 TGCGACTTATGTATAGCCGGT 59.041 47.619 1.90 0.00 0.00 5.28
3322 3403 2.030540 TGCGACTTATGTATAGCCGGTC 60.031 50.000 1.90 0.00 0.00 4.79
3323 3404 2.030540 GCGACTTATGTATAGCCGGTCA 60.031 50.000 1.90 0.00 0.00 4.02
3324 3405 3.551454 GCGACTTATGTATAGCCGGTCAA 60.551 47.826 1.90 0.00 0.00 3.18
3325 3406 4.613944 CGACTTATGTATAGCCGGTCAAA 58.386 43.478 1.90 0.00 0.00 2.69
3326 3407 5.227908 CGACTTATGTATAGCCGGTCAAAT 58.772 41.667 1.90 0.00 0.00 2.32
3327 3408 5.694910 CGACTTATGTATAGCCGGTCAAATT 59.305 40.000 1.90 0.00 0.00 1.82
3328 3409 6.202188 CGACTTATGTATAGCCGGTCAAATTT 59.798 38.462 1.90 0.00 0.00 1.82
3329 3410 7.383029 CGACTTATGTATAGCCGGTCAAATTTA 59.617 37.037 1.90 0.00 0.00 1.40
3330 3411 8.374327 ACTTATGTATAGCCGGTCAAATTTAC 57.626 34.615 1.90 0.00 0.00 2.01
3331 3412 7.988599 ACTTATGTATAGCCGGTCAAATTTACA 59.011 33.333 1.90 2.87 0.00 2.41
3332 3413 8.911918 TTATGTATAGCCGGTCAAATTTACAT 57.088 30.769 1.90 9.80 34.45 2.29
3333 3414 6.612247 TGTATAGCCGGTCAAATTTACATG 57.388 37.500 1.90 0.00 0.00 3.21
3334 3415 5.529430 TGTATAGCCGGTCAAATTTACATGG 59.471 40.000 1.90 0.00 0.00 3.66
3335 3416 2.099405 AGCCGGTCAAATTTACATGGG 58.901 47.619 1.90 0.00 0.00 4.00
3336 3417 2.096248 GCCGGTCAAATTTACATGGGA 58.904 47.619 1.90 0.00 0.00 4.37
3337 3418 2.099098 GCCGGTCAAATTTACATGGGAG 59.901 50.000 1.90 0.00 0.00 4.30
3338 3419 3.352648 CCGGTCAAATTTACATGGGAGT 58.647 45.455 0.00 0.00 0.00 3.85
3339 3420 3.128589 CCGGTCAAATTTACATGGGAGTG 59.871 47.826 0.00 0.00 0.00 3.51
3340 3421 3.128589 CGGTCAAATTTACATGGGAGTGG 59.871 47.826 0.00 0.00 0.00 4.00
3341 3422 3.119137 GGTCAAATTTACATGGGAGTGGC 60.119 47.826 0.00 0.00 0.00 5.01
3342 3423 3.763897 GTCAAATTTACATGGGAGTGGCT 59.236 43.478 0.00 0.00 0.00 4.75
3343 3424 4.947388 GTCAAATTTACATGGGAGTGGCTA 59.053 41.667 0.00 0.00 0.00 3.93
3344 3425 5.066505 GTCAAATTTACATGGGAGTGGCTAG 59.933 44.000 0.00 0.00 0.00 3.42
3345 3426 3.864789 ATTTACATGGGAGTGGCTAGG 57.135 47.619 0.00 0.00 0.00 3.02
3346 3427 0.837272 TTACATGGGAGTGGCTAGGC 59.163 55.000 9.85 9.85 0.00 3.93
3347 3428 0.031111 TACATGGGAGTGGCTAGGCT 60.031 55.000 18.18 0.00 0.00 4.58
3348 3429 0.916358 ACATGGGAGTGGCTAGGCTT 60.916 55.000 18.18 5.71 0.00 4.35
3349 3430 0.257039 CATGGGAGTGGCTAGGCTTT 59.743 55.000 18.18 5.32 0.00 3.51
3350 3431 1.490490 CATGGGAGTGGCTAGGCTTTA 59.510 52.381 18.18 0.00 0.00 1.85
3351 3432 1.204146 TGGGAGTGGCTAGGCTTTAG 58.796 55.000 18.18 0.00 0.00 1.85
3352 3433 0.470341 GGGAGTGGCTAGGCTTTAGG 59.530 60.000 18.18 0.00 0.00 2.69
3353 3434 0.179043 GGAGTGGCTAGGCTTTAGGC 60.179 60.000 18.18 13.00 40.12 3.93
3363 3444 3.051617 GCTTTAGGCCCTGTTTGGT 57.948 52.632 0.00 0.00 34.27 3.67
3364 3445 1.338107 GCTTTAGGCCCTGTTTGGTT 58.662 50.000 0.00 0.00 34.27 3.67
3365 3446 2.521126 GCTTTAGGCCCTGTTTGGTTA 58.479 47.619 0.00 0.00 34.27 2.85
3366 3447 2.894765 GCTTTAGGCCCTGTTTGGTTAA 59.105 45.455 0.00 0.00 34.27 2.01
3367 3448 3.056821 GCTTTAGGCCCTGTTTGGTTAAG 60.057 47.826 0.00 0.00 34.27 1.85
3368 3449 3.887916 TTAGGCCCTGTTTGGTTAAGT 57.112 42.857 0.00 0.00 0.00 2.24
3369 3450 2.287977 AGGCCCTGTTTGGTTAAGTC 57.712 50.000 0.00 0.00 0.00 3.01
3370 3451 1.203013 AGGCCCTGTTTGGTTAAGTCC 60.203 52.381 0.00 0.00 0.00 3.85
3371 3452 1.203013 GGCCCTGTTTGGTTAAGTCCT 60.203 52.381 0.00 0.00 0.00 3.85
3372 3453 2.040679 GGCCCTGTTTGGTTAAGTCCTA 59.959 50.000 0.00 0.00 0.00 2.94
3373 3454 3.344515 GCCCTGTTTGGTTAAGTCCTAG 58.655 50.000 0.00 0.00 0.00 3.02
3374 3455 3.872630 GCCCTGTTTGGTTAAGTCCTAGG 60.873 52.174 0.82 0.82 0.00 3.02
3375 3456 3.308188 CCCTGTTTGGTTAAGTCCTAGGG 60.308 52.174 9.46 0.00 36.69 3.53
3376 3457 3.344515 CTGTTTGGTTAAGTCCTAGGGC 58.655 50.000 4.79 4.79 0.00 5.19
3377 3458 2.983898 TGTTTGGTTAAGTCCTAGGGCT 59.016 45.455 11.08 11.08 0.00 5.19
3378 3459 3.396611 TGTTTGGTTAAGTCCTAGGGCTT 59.603 43.478 30.55 30.55 0.00 4.35
3379 3460 4.141111 TGTTTGGTTAAGTCCTAGGGCTTT 60.141 41.667 32.64 17.07 0.00 3.51
3380 3461 4.734843 TTGGTTAAGTCCTAGGGCTTTT 57.265 40.909 32.64 13.51 0.00 2.27
3381 3462 4.734843 TGGTTAAGTCCTAGGGCTTTTT 57.265 40.909 32.64 12.72 0.00 1.94
3407 3488 9.886132 TTTATCCCAACTTATAAGTCTCAAGTC 57.114 33.333 18.28 0.00 38.57 3.01
3408 3489 6.295719 TCCCAACTTATAAGTCTCAAGTCC 57.704 41.667 18.28 0.00 38.57 3.85
3409 3490 5.783360 TCCCAACTTATAAGTCTCAAGTCCA 59.217 40.000 18.28 0.00 38.57 4.02
3410 3491 6.443849 TCCCAACTTATAAGTCTCAAGTCCAT 59.556 38.462 18.28 0.00 38.57 3.41
3411 3492 7.622081 TCCCAACTTATAAGTCTCAAGTCCATA 59.378 37.037 18.28 0.00 38.57 2.74
3412 3493 8.265055 CCCAACTTATAAGTCTCAAGTCCATAA 58.735 37.037 18.28 0.00 38.57 1.90
3413 3494 9.667107 CCAACTTATAAGTCTCAAGTCCATAAA 57.333 33.333 18.28 0.00 38.57 1.40
3419 3500 8.794335 ATAAGTCTCAAGTCCATAAAAAGTCC 57.206 34.615 0.00 0.00 0.00 3.85
3420 3501 5.561679 AGTCTCAAGTCCATAAAAAGTCCC 58.438 41.667 0.00 0.00 0.00 4.46
3421 3502 5.310857 AGTCTCAAGTCCATAAAAAGTCCCT 59.689 40.000 0.00 0.00 0.00 4.20
3422 3503 6.500751 AGTCTCAAGTCCATAAAAAGTCCCTA 59.499 38.462 0.00 0.00 0.00 3.53
3423 3504 6.594547 GTCTCAAGTCCATAAAAAGTCCCTAC 59.405 42.308 0.00 0.00 0.00 3.18
3424 3505 6.500751 TCTCAAGTCCATAAAAAGTCCCTACT 59.499 38.462 0.00 0.00 37.65 2.57
3425 3506 6.472887 TCAAGTCCATAAAAAGTCCCTACTG 58.527 40.000 0.00 0.00 35.62 2.74
3426 3507 6.043938 TCAAGTCCATAAAAAGTCCCTACTGT 59.956 38.462 0.00 0.00 35.62 3.55
3427 3508 6.449830 AGTCCATAAAAAGTCCCTACTGTT 57.550 37.500 0.00 0.00 34.43 3.16
3428 3509 6.849151 AGTCCATAAAAAGTCCCTACTGTTT 58.151 36.000 0.00 0.00 43.97 2.83
3429 3510 6.715264 AGTCCATAAAAAGTCCCTACTGTTTG 59.285 38.462 4.33 0.00 42.12 2.93
3430 3511 6.007703 TCCATAAAAAGTCCCTACTGTTTGG 58.992 40.000 4.33 0.00 42.12 3.28
3431 3512 5.773176 CCATAAAAAGTCCCTACTGTTTGGT 59.227 40.000 4.33 0.00 42.12 3.67
3432 3513 6.943718 CCATAAAAAGTCCCTACTGTTTGGTA 59.056 38.462 4.33 0.00 42.12 3.25
3433 3514 7.094506 CCATAAAAAGTCCCTACTGTTTGGTAC 60.095 40.741 4.33 0.00 42.12 3.34
3434 3515 4.362470 AAAGTCCCTACTGTTTGGTACC 57.638 45.455 4.43 4.43 35.62 3.34
3435 3516 3.271153 AGTCCCTACTGTTTGGTACCT 57.729 47.619 14.36 0.00 33.57 3.08
3436 3517 2.904434 AGTCCCTACTGTTTGGTACCTG 59.096 50.000 14.36 0.99 33.57 4.00
3437 3518 2.027469 GTCCCTACTGTTTGGTACCTGG 60.027 54.545 14.36 0.00 0.00 4.45
3438 3519 1.280998 CCCTACTGTTTGGTACCTGGG 59.719 57.143 14.36 2.60 0.00 4.45
3439 3520 2.262637 CCTACTGTTTGGTACCTGGGA 58.737 52.381 14.36 0.00 0.00 4.37
3440 3521 2.844348 CCTACTGTTTGGTACCTGGGAT 59.156 50.000 14.36 0.00 0.00 3.85
3441 3522 3.265995 CCTACTGTTTGGTACCTGGGATT 59.734 47.826 14.36 0.00 0.00 3.01
3442 3523 3.895704 ACTGTTTGGTACCTGGGATTT 57.104 42.857 14.36 0.00 0.00 2.17
3443 3524 5.045432 CCTACTGTTTGGTACCTGGGATTTA 60.045 44.000 14.36 0.00 0.00 1.40
3444 3525 5.530176 ACTGTTTGGTACCTGGGATTTAT 57.470 39.130 14.36 0.00 0.00 1.40
3445 3526 6.645884 ACTGTTTGGTACCTGGGATTTATA 57.354 37.500 14.36 0.00 0.00 0.98
3446 3527 7.034967 ACTGTTTGGTACCTGGGATTTATAA 57.965 36.000 14.36 0.00 0.00 0.98
3447 3528 7.116736 ACTGTTTGGTACCTGGGATTTATAAG 58.883 38.462 14.36 0.00 0.00 1.73
3448 3529 7.037153 ACTGTTTGGTACCTGGGATTTATAAGA 60.037 37.037 14.36 0.00 0.00 2.10
3449 3530 7.114095 TGTTTGGTACCTGGGATTTATAAGAC 58.886 38.462 14.36 0.00 0.00 3.01
3450 3531 5.899631 TGGTACCTGGGATTTATAAGACC 57.100 43.478 14.36 2.60 0.00 3.85
3451 3532 4.661709 TGGTACCTGGGATTTATAAGACCC 59.338 45.833 14.36 17.07 42.37 4.46
3452 3533 4.912133 GGTACCTGGGATTTATAAGACCCT 59.088 45.833 21.54 10.43 42.49 4.34
3453 3534 6.086775 GGTACCTGGGATTTATAAGACCCTA 58.913 44.000 21.54 12.14 42.49 3.53
3454 3535 6.734281 GGTACCTGGGATTTATAAGACCCTAT 59.266 42.308 21.54 13.38 42.49 2.57
3455 3536 7.902941 GGTACCTGGGATTTATAAGACCCTATA 59.097 40.741 21.54 12.73 42.49 1.31
3456 3537 9.330220 GTACCTGGGATTTATAAGACCCTATAA 57.670 37.037 21.54 7.92 42.49 0.98
3457 3538 8.450780 ACCTGGGATTTATAAGACCCTATAAG 57.549 38.462 21.54 14.05 42.49 1.73
3458 3539 8.246615 ACCTGGGATTTATAAGACCCTATAAGA 58.753 37.037 21.54 7.17 42.49 2.10
3459 3540 8.541234 CCTGGGATTTATAAGACCCTATAAGAC 58.459 40.741 21.54 3.00 42.49 3.01
3460 3541 8.445361 TGGGATTTATAAGACCCTATAAGACC 57.555 38.462 21.54 0.00 42.49 3.85
3461 3542 8.020253 TGGGATTTATAAGACCCTATAAGACCA 58.980 37.037 21.54 0.00 42.49 4.02
3462 3543 9.059023 GGGATTTATAAGACCCTATAAGACCAT 57.941 37.037 16.80 0.00 39.28 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.948758 TGGACATGGCTGTAATATTTTGACA 59.051 36.000 0.00 0.00 35.14 3.58
29 30 6.449635 TGGACATGGCTGTAATATTTTGAC 57.550 37.500 0.00 0.00 35.14 3.18
31 32 7.041635 TCATGGACATGGCTGTAATATTTTG 57.958 36.000 11.98 0.00 39.24 2.44
32 33 7.417797 GGTTCATGGACATGGCTGTAATATTTT 60.418 37.037 6.44 0.00 39.24 1.82
39 42 1.915489 AGGTTCATGGACATGGCTGTA 59.085 47.619 6.44 0.00 39.24 2.74
131 139 6.439692 TCCCCTTACTCCGATATAAGAAATCC 59.560 42.308 0.00 0.00 31.20 3.01
148 156 3.439129 CGTCCATTTTGAGTTCCCCTTAC 59.561 47.826 0.00 0.00 0.00 2.34
149 157 3.073356 ACGTCCATTTTGAGTTCCCCTTA 59.927 43.478 0.00 0.00 0.00 2.69
150 158 2.158519 ACGTCCATTTTGAGTTCCCCTT 60.159 45.455 0.00 0.00 0.00 3.95
151 159 1.423921 ACGTCCATTTTGAGTTCCCCT 59.576 47.619 0.00 0.00 0.00 4.79
152 160 1.539827 CACGTCCATTTTGAGTTCCCC 59.460 52.381 0.00 0.00 0.00 4.81
165 173 0.323302 TTTCTAGCATGCCACGTCCA 59.677 50.000 15.66 0.00 0.00 4.02
275 287 1.301401 CCGGTCTTGTTTCTCGCCA 60.301 57.895 0.00 0.00 0.00 5.69
282 294 1.388837 GGGTTGTGCCGGTCTTGTTT 61.389 55.000 1.90 0.00 38.44 2.83
299 311 1.169577 CTCGATCGGGATCTACTGGG 58.830 60.000 10.16 0.00 35.72 4.45
445 466 1.144057 CCAGATTTCGGACTCGGGG 59.856 63.158 0.00 0.00 36.95 5.73
601 630 3.445518 GATGGCGATGGTGCGAGGA 62.446 63.158 0.00 0.00 35.06 3.71
625 654 2.457778 TTCGCGCGGGCAATTAGAC 61.458 57.895 31.69 0.00 39.92 2.59
663 692 3.693085 TCGGTTATAGCTAGCTAATCGGG 59.307 47.826 27.47 16.53 31.73 5.14
664 693 4.634883 TCTCGGTTATAGCTAGCTAATCGG 59.365 45.833 27.47 21.09 31.73 4.18
665 694 5.798015 TCTCGGTTATAGCTAGCTAATCG 57.202 43.478 27.47 24.21 31.73 3.34
666 695 7.334921 TCTCTTCTCGGTTATAGCTAGCTAATC 59.665 40.741 27.47 18.76 31.73 1.75
667 696 7.120138 GTCTCTTCTCGGTTATAGCTAGCTAAT 59.880 40.741 27.47 17.57 31.73 1.73
668 697 6.427547 GTCTCTTCTCGGTTATAGCTAGCTAA 59.572 42.308 27.47 12.18 31.73 3.09
669 698 5.933463 GTCTCTTCTCGGTTATAGCTAGCTA 59.067 44.000 26.09 26.09 0.00 3.32
670 699 4.758165 GTCTCTTCTCGGTTATAGCTAGCT 59.242 45.833 23.12 23.12 0.00 3.32
671 700 4.083164 GGTCTCTTCTCGGTTATAGCTAGC 60.083 50.000 6.62 6.62 0.00 3.42
672 701 5.049267 GTGGTCTCTTCTCGGTTATAGCTAG 60.049 48.000 0.00 0.00 0.00 3.42
673 702 4.820716 GTGGTCTCTTCTCGGTTATAGCTA 59.179 45.833 0.00 0.00 0.00 3.32
674 703 3.633065 GTGGTCTCTTCTCGGTTATAGCT 59.367 47.826 0.00 0.00 0.00 3.32
675 704 3.243468 GGTGGTCTCTTCTCGGTTATAGC 60.243 52.174 0.00 0.00 0.00 2.97
676 705 3.003482 CGGTGGTCTCTTCTCGGTTATAG 59.997 52.174 0.00 0.00 0.00 1.31
677 706 2.947652 CGGTGGTCTCTTCTCGGTTATA 59.052 50.000 0.00 0.00 0.00 0.98
678 707 1.749634 CGGTGGTCTCTTCTCGGTTAT 59.250 52.381 0.00 0.00 0.00 1.89
679 708 1.171308 CGGTGGTCTCTTCTCGGTTA 58.829 55.000 0.00 0.00 0.00 2.85
680 709 1.533469 CCGGTGGTCTCTTCTCGGTT 61.533 60.000 0.00 0.00 33.63 4.44
681 710 1.977544 CCGGTGGTCTCTTCTCGGT 60.978 63.158 0.00 0.00 33.63 4.69
707 736 9.355215 CACAACTCACGAACTTTCTTATATACT 57.645 33.333 0.00 0.00 0.00 2.12
908 938 0.390124 TACCTTTCTCGCAACCGTGT 59.610 50.000 0.00 0.00 35.54 4.49
915 959 0.242825 CTGTCGGTACCTTTCTCGCA 59.757 55.000 10.90 0.00 0.00 5.10
976 1023 2.931320 GCCGATCGATGGTATTCCCTTC 60.931 54.545 18.66 0.00 34.71 3.46
982 1029 0.895530 ATCGGCCGATCGATGGTATT 59.104 50.000 34.60 10.05 46.52 1.89
996 1043 3.951655 CTTGTGCGCAACCATCGGC 62.952 63.158 14.00 0.00 0.00 5.54
1506 1553 3.224324 GGTATCGGCCCGCTGAGA 61.224 66.667 0.00 0.00 34.49 3.27
1547 1594 4.908687 CCATCGAATCGCCGGCCA 62.909 66.667 23.46 9.24 0.00 5.36
1557 1604 4.508128 GACTCGGCGCCCATCGAA 62.508 66.667 23.46 0.00 41.67 3.71
1575 1622 2.165234 CGTCTTGATCTCCTGCTTGAGA 59.835 50.000 7.98 7.98 45.01 3.27
1812 1859 0.400213 ACGATGCCTTTGTCTTCCCA 59.600 50.000 0.00 0.00 0.00 4.37
1911 1958 0.742990 GGCCGATGATTGGACACGAA 60.743 55.000 1.99 0.00 33.37 3.85
1917 1964 1.832219 CCTCTGGCCGATGATTGGA 59.168 57.895 1.99 0.00 0.00 3.53
1962 2009 3.317571 AGGAGCTTGCGCCAGTCT 61.318 61.111 17.01 7.67 36.60 3.24
2488 2535 1.375523 GTCGTTGAATGGCCTCCGT 60.376 57.895 3.32 0.00 0.00 4.69
2489 2536 2.452813 CGTCGTTGAATGGCCTCCG 61.453 63.158 3.32 0.00 0.00 4.63
2490 2537 2.106683 CCGTCGTTGAATGGCCTCC 61.107 63.158 3.32 0.00 0.00 4.30
2491 2538 2.750888 GCCGTCGTTGAATGGCCTC 61.751 63.158 3.32 0.00 41.70 4.70
2492 2539 2.746277 GCCGTCGTTGAATGGCCT 60.746 61.111 3.32 0.00 41.70 5.19
2493 2540 4.160635 CGCCGTCGTTGAATGGCC 62.161 66.667 0.00 0.00 44.71 5.36
2494 2541 4.811761 GCGCCGTCGTTGAATGGC 62.812 66.667 0.00 0.00 44.09 4.40
2495 2542 4.160635 GGCGCCGTCGTTGAATGG 62.161 66.667 12.58 0.00 38.14 3.16
2496 2543 2.749865 ATGGCGCCGTCGTTGAATG 61.750 57.895 23.90 0.00 38.14 2.67
2497 2544 2.435938 ATGGCGCCGTCGTTGAAT 60.436 55.556 23.90 3.48 38.14 2.57
2531 2583 0.247460 GAATGGGCTTTGGACAAGGC 59.753 55.000 10.28 10.28 41.92 4.35
2633 2687 2.001269 GTGGCCACTACCCCCTGAT 61.001 63.158 29.12 0.00 0.00 2.90
2641 2695 0.171007 TACTAACGCGTGGCCACTAC 59.829 55.000 32.28 22.73 0.00 2.73
2675 2729 4.388773 CAGAACGATTTACTGCTGCTACAA 59.611 41.667 0.00 0.00 0.00 2.41
2727 2787 0.261696 AACCACTGGACCTTGGCTTT 59.738 50.000 11.56 0.00 36.20 3.51
2728 2788 0.468029 CAACCACTGGACCTTGGCTT 60.468 55.000 11.56 4.45 36.20 4.35
2729 2789 1.151450 CAACCACTGGACCTTGGCT 59.849 57.895 11.56 0.00 36.20 4.75
2879 2950 0.109781 CGTGCTTGAACAATTCCCCG 60.110 55.000 0.00 0.00 0.00 5.73
2885 2956 1.370414 GCGTGCGTGCTTGAACAAT 60.370 52.632 0.00 0.00 0.00 2.71
2995 3067 5.506815 CGCGGGTAGAATACAAGTCAGATAA 60.507 44.000 0.00 0.00 45.43 1.75
2997 3069 3.243434 CGCGGGTAGAATACAAGTCAGAT 60.243 47.826 0.00 0.00 45.43 2.90
3032 3113 1.669604 TTTTACTTGTGGCGCAGTCA 58.330 45.000 10.83 1.43 43.93 3.41
3035 3116 3.900941 AGAAATTTTACTTGTGGCGCAG 58.099 40.909 10.83 0.00 0.00 5.18
3038 3119 4.843984 CGTGTAGAAATTTTACTTGTGGCG 59.156 41.667 0.00 0.00 0.00 5.69
3057 3138 5.563085 GCTTACACATAGCTAGCTATCGTGT 60.563 44.000 38.83 38.83 44.00 4.49
3058 3139 4.854291 GCTTACACATAGCTAGCTATCGTG 59.146 45.833 35.33 35.33 40.12 4.35
3059 3140 4.762765 AGCTTACACATAGCTAGCTATCGT 59.237 41.667 30.32 28.58 46.66 3.73
3060 3141 5.092105 CAGCTTACACATAGCTAGCTATCG 58.908 45.833 30.32 25.28 46.80 2.92
3061 3142 6.090129 GTCAGCTTACACATAGCTAGCTATC 58.910 44.000 30.32 18.66 46.80 2.08
3062 3143 5.047660 GGTCAGCTTACACATAGCTAGCTAT 60.048 44.000 28.08 28.08 46.80 2.97
3063 3144 4.278669 GGTCAGCTTACACATAGCTAGCTA 59.721 45.833 26.09 26.09 46.80 3.32
3064 3145 3.068873 GGTCAGCTTACACATAGCTAGCT 59.931 47.826 23.12 23.12 46.80 3.32
3065 3146 3.181475 TGGTCAGCTTACACATAGCTAGC 60.181 47.826 6.62 6.62 46.80 3.42
3066 3147 4.655762 TGGTCAGCTTACACATAGCTAG 57.344 45.455 0.00 0.00 46.80 3.42
3067 3148 5.414789 TTTGGTCAGCTTACACATAGCTA 57.585 39.130 0.00 0.00 46.80 3.32
3069 3150 5.567138 AATTTGGTCAGCTTACACATAGC 57.433 39.130 0.00 0.00 38.93 2.97
3070 3151 5.801947 GCAAATTTGGTCAGCTTACACATAG 59.198 40.000 19.47 0.00 0.00 2.23
3071 3152 5.336372 GGCAAATTTGGTCAGCTTACACATA 60.336 40.000 19.47 0.00 0.00 2.29
3072 3153 4.559153 GCAAATTTGGTCAGCTTACACAT 58.441 39.130 19.47 0.00 0.00 3.21
3073 3154 3.243704 GGCAAATTTGGTCAGCTTACACA 60.244 43.478 19.47 0.00 0.00 3.72
3074 3155 3.243704 TGGCAAATTTGGTCAGCTTACAC 60.244 43.478 19.47 0.00 0.00 2.90
3075 3156 2.961741 TGGCAAATTTGGTCAGCTTACA 59.038 40.909 19.47 0.00 0.00 2.41
3076 3157 3.005791 AGTGGCAAATTTGGTCAGCTTAC 59.994 43.478 19.47 8.29 0.00 2.34
3077 3158 3.230134 AGTGGCAAATTTGGTCAGCTTA 58.770 40.909 19.47 0.00 0.00 3.09
3078 3159 2.041701 AGTGGCAAATTTGGTCAGCTT 58.958 42.857 19.47 0.00 0.00 3.74
3079 3160 1.708341 AGTGGCAAATTTGGTCAGCT 58.292 45.000 19.47 6.08 0.00 4.24
3080 3161 2.137523 CAAGTGGCAAATTTGGTCAGC 58.862 47.619 19.47 4.66 0.00 4.26
3081 3162 2.548493 CCCAAGTGGCAAATTTGGTCAG 60.548 50.000 19.47 6.52 39.74 3.51
3082 3163 1.415659 CCCAAGTGGCAAATTTGGTCA 59.584 47.619 19.47 5.66 39.74 4.02
3083 3164 1.416030 ACCCAAGTGGCAAATTTGGTC 59.584 47.619 19.47 3.91 39.74 4.02
3084 3165 1.506025 ACCCAAGTGGCAAATTTGGT 58.494 45.000 19.47 12.51 39.74 3.67
3085 3166 3.070878 ACTTACCCAAGTGGCAAATTTGG 59.929 43.478 19.47 15.85 43.50 3.28
3086 3167 4.335400 ACTTACCCAAGTGGCAAATTTG 57.665 40.909 14.03 14.03 43.50 2.32
3087 3168 6.487299 TTTACTTACCCAAGTGGCAAATTT 57.513 33.333 0.00 0.00 44.81 1.82
3088 3169 6.680148 ATTTACTTACCCAAGTGGCAAATT 57.320 33.333 0.00 0.00 44.81 1.82
3089 3170 6.680148 AATTTACTTACCCAAGTGGCAAAT 57.320 33.333 0.00 0.00 44.81 2.32
3090 3171 6.284459 CAAATTTACTTACCCAAGTGGCAAA 58.716 36.000 0.00 0.00 44.81 3.68
3091 3172 5.221541 CCAAATTTACTTACCCAAGTGGCAA 60.222 40.000 0.00 0.00 44.81 4.52
3092 3173 4.282195 CCAAATTTACTTACCCAAGTGGCA 59.718 41.667 0.35 0.00 44.81 4.92
3093 3174 4.816392 CCAAATTTACTTACCCAAGTGGC 58.184 43.478 0.35 0.00 44.81 5.01
3094 3175 4.322424 GGCCAAATTTACTTACCCAAGTGG 60.322 45.833 0.00 0.00 44.81 4.00
3095 3176 4.617298 CGGCCAAATTTACTTACCCAAGTG 60.617 45.833 2.24 0.00 44.81 3.16
3096 3177 3.508402 CGGCCAAATTTACTTACCCAAGT 59.492 43.478 2.24 0.00 46.77 3.16
3097 3178 3.119280 CCGGCCAAATTTACTTACCCAAG 60.119 47.826 2.24 0.00 37.81 3.61
3098 3179 2.826725 CCGGCCAAATTTACTTACCCAA 59.173 45.455 2.24 0.00 0.00 4.12
3099 3180 2.041350 TCCGGCCAAATTTACTTACCCA 59.959 45.455 2.24 0.00 0.00 4.51
3100 3181 2.686405 CTCCGGCCAAATTTACTTACCC 59.314 50.000 2.24 0.00 0.00 3.69
3101 3182 2.686405 CCTCCGGCCAAATTTACTTACC 59.314 50.000 2.24 0.00 0.00 2.85
3102 3183 3.613030 TCCTCCGGCCAAATTTACTTAC 58.387 45.455 2.24 0.00 0.00 2.34
3103 3184 3.520317 TCTCCTCCGGCCAAATTTACTTA 59.480 43.478 2.24 0.00 0.00 2.24
3104 3185 2.307686 TCTCCTCCGGCCAAATTTACTT 59.692 45.455 2.24 0.00 0.00 2.24
3105 3186 1.913419 TCTCCTCCGGCCAAATTTACT 59.087 47.619 2.24 0.00 0.00 2.24
3106 3187 2.413310 TCTCCTCCGGCCAAATTTAC 57.587 50.000 2.24 0.00 0.00 2.01
3107 3188 3.086282 GTTTCTCCTCCGGCCAAATTTA 58.914 45.455 2.24 0.00 0.00 1.40
3108 3189 1.893137 GTTTCTCCTCCGGCCAAATTT 59.107 47.619 2.24 0.00 0.00 1.82
3109 3190 1.203001 TGTTTCTCCTCCGGCCAAATT 60.203 47.619 2.24 0.00 0.00 1.82
3110 3191 0.404040 TGTTTCTCCTCCGGCCAAAT 59.596 50.000 2.24 0.00 0.00 2.32
3111 3192 0.183971 TTGTTTCTCCTCCGGCCAAA 59.816 50.000 2.24 0.00 0.00 3.28
3112 3193 0.404040 ATTGTTTCTCCTCCGGCCAA 59.596 50.000 2.24 0.00 0.00 4.52
3113 3194 0.035439 GATTGTTTCTCCTCCGGCCA 60.035 55.000 2.24 0.00 0.00 5.36
3114 3195 0.035439 TGATTGTTTCTCCTCCGGCC 60.035 55.000 0.00 0.00 0.00 6.13
3115 3196 1.066143 TCTGATTGTTTCTCCTCCGGC 60.066 52.381 0.00 0.00 0.00 6.13
3116 3197 2.419297 CCTCTGATTGTTTCTCCTCCGG 60.419 54.545 0.00 0.00 0.00 5.14
3117 3198 2.497675 TCCTCTGATTGTTTCTCCTCCG 59.502 50.000 0.00 0.00 0.00 4.63
3118 3199 3.118445 CCTCCTCTGATTGTTTCTCCTCC 60.118 52.174 0.00 0.00 0.00 4.30
3119 3200 3.772025 TCCTCCTCTGATTGTTTCTCCTC 59.228 47.826 0.00 0.00 0.00 3.71
3120 3201 3.796111 TCCTCCTCTGATTGTTTCTCCT 58.204 45.455 0.00 0.00 0.00 3.69
3121 3202 4.559862 TTCCTCCTCTGATTGTTTCTCC 57.440 45.455 0.00 0.00 0.00 3.71
3122 3203 6.884280 TTTTTCCTCCTCTGATTGTTTCTC 57.116 37.500 0.00 0.00 0.00 2.87
3142 3223 1.882623 CGCTTCTTCCTCCAGCTTTTT 59.117 47.619 0.00 0.00 0.00 1.94
3143 3224 1.202818 ACGCTTCTTCCTCCAGCTTTT 60.203 47.619 0.00 0.00 0.00 2.27
3144 3225 0.398318 ACGCTTCTTCCTCCAGCTTT 59.602 50.000 0.00 0.00 0.00 3.51
3145 3226 0.398318 AACGCTTCTTCCTCCAGCTT 59.602 50.000 0.00 0.00 0.00 3.74
3146 3227 0.321122 CAACGCTTCTTCCTCCAGCT 60.321 55.000 0.00 0.00 0.00 4.24
3147 3228 0.320771 TCAACGCTTCTTCCTCCAGC 60.321 55.000 0.00 0.00 0.00 4.85
3148 3229 2.169832 TTCAACGCTTCTTCCTCCAG 57.830 50.000 0.00 0.00 0.00 3.86
3149 3230 2.303022 AGATTCAACGCTTCTTCCTCCA 59.697 45.455 0.00 0.00 0.00 3.86
3150 3231 2.979240 AGATTCAACGCTTCTTCCTCC 58.021 47.619 0.00 0.00 0.00 4.30
3151 3232 6.670077 ATAAAGATTCAACGCTTCTTCCTC 57.330 37.500 0.00 0.00 0.00 3.71
3152 3233 7.454260 AAATAAAGATTCAACGCTTCTTCCT 57.546 32.000 0.00 0.00 0.00 3.36
3153 3234 9.788960 ATTAAATAAAGATTCAACGCTTCTTCC 57.211 29.630 0.00 0.00 0.00 3.46
3173 3254 8.865090 AGTCGTCTCTGGATCATTAGATTAAAT 58.135 33.333 0.00 0.00 33.72 1.40
3174 3255 8.239038 AGTCGTCTCTGGATCATTAGATTAAA 57.761 34.615 0.00 0.00 33.72 1.52
3175 3256 7.825331 AGTCGTCTCTGGATCATTAGATTAA 57.175 36.000 0.00 0.00 33.72 1.40
3176 3257 7.937394 TGTAGTCGTCTCTGGATCATTAGATTA 59.063 37.037 0.00 0.00 33.72 1.75
3177 3258 6.773200 TGTAGTCGTCTCTGGATCATTAGATT 59.227 38.462 0.00 0.00 33.72 2.40
3178 3259 6.299922 TGTAGTCGTCTCTGGATCATTAGAT 58.700 40.000 0.00 0.00 37.13 1.98
3179 3260 5.681639 TGTAGTCGTCTCTGGATCATTAGA 58.318 41.667 0.00 0.00 0.00 2.10
3180 3261 6.377780 CATGTAGTCGTCTCTGGATCATTAG 58.622 44.000 0.00 0.00 0.00 1.73
3181 3262 5.278512 GCATGTAGTCGTCTCTGGATCATTA 60.279 44.000 0.00 0.00 0.00 1.90
3182 3263 4.500545 GCATGTAGTCGTCTCTGGATCATT 60.501 45.833 0.00 0.00 0.00 2.57
3183 3264 3.005261 GCATGTAGTCGTCTCTGGATCAT 59.995 47.826 0.00 0.00 0.00 2.45
3184 3265 2.359214 GCATGTAGTCGTCTCTGGATCA 59.641 50.000 0.00 0.00 0.00 2.92
3185 3266 2.359214 TGCATGTAGTCGTCTCTGGATC 59.641 50.000 0.00 0.00 0.00 3.36
3186 3267 2.379005 TGCATGTAGTCGTCTCTGGAT 58.621 47.619 0.00 0.00 0.00 3.41
3187 3268 1.834188 TGCATGTAGTCGTCTCTGGA 58.166 50.000 0.00 0.00 0.00 3.86
3188 3269 2.099756 TGATGCATGTAGTCGTCTCTGG 59.900 50.000 2.46 0.00 0.00 3.86
3189 3270 3.427161 TGATGCATGTAGTCGTCTCTG 57.573 47.619 2.46 0.00 0.00 3.35
3190 3271 4.662468 AATGATGCATGTAGTCGTCTCT 57.338 40.909 2.46 0.00 0.00 3.10
3191 3272 5.291858 TGAAAATGATGCATGTAGTCGTCTC 59.708 40.000 2.46 0.00 0.00 3.36
3192 3273 5.178061 TGAAAATGATGCATGTAGTCGTCT 58.822 37.500 2.46 0.00 0.00 4.18
3193 3274 5.469373 TGAAAATGATGCATGTAGTCGTC 57.531 39.130 2.46 0.00 0.00 4.20
3194 3275 5.731406 GCATGAAAATGATGCATGTAGTCGT 60.731 40.000 2.46 0.00 44.74 4.34
3195 3276 4.673761 GCATGAAAATGATGCATGTAGTCG 59.326 41.667 2.46 0.00 44.74 4.18
3204 3285 3.129813 TGTCCTCTGCATGAAAATGATGC 59.870 43.478 0.00 0.00 45.45 3.91
3205 3286 4.202020 CCTGTCCTCTGCATGAAAATGATG 60.202 45.833 0.00 0.00 0.00 3.07
3206 3287 3.952323 CCTGTCCTCTGCATGAAAATGAT 59.048 43.478 0.00 0.00 0.00 2.45
3207 3288 3.349927 CCTGTCCTCTGCATGAAAATGA 58.650 45.455 0.00 0.00 0.00 2.57
3208 3289 2.426024 CCCTGTCCTCTGCATGAAAATG 59.574 50.000 0.00 0.00 0.00 2.32
3209 3290 2.309755 TCCCTGTCCTCTGCATGAAAAT 59.690 45.455 0.00 0.00 0.00 1.82
3210 3291 1.704628 TCCCTGTCCTCTGCATGAAAA 59.295 47.619 0.00 0.00 0.00 2.29
3211 3292 1.361204 TCCCTGTCCTCTGCATGAAA 58.639 50.000 0.00 0.00 0.00 2.69
3212 3293 1.361204 TTCCCTGTCCTCTGCATGAA 58.639 50.000 0.00 0.00 0.00 2.57
3213 3294 1.361204 TTTCCCTGTCCTCTGCATGA 58.639 50.000 0.00 0.00 0.00 3.07
3214 3295 1.815003 GTTTTCCCTGTCCTCTGCATG 59.185 52.381 0.00 0.00 0.00 4.06
3215 3296 1.272147 GGTTTTCCCTGTCCTCTGCAT 60.272 52.381 0.00 0.00 0.00 3.96
3216 3297 0.110486 GGTTTTCCCTGTCCTCTGCA 59.890 55.000 0.00 0.00 0.00 4.41
3217 3298 2.948386 GGTTTTCCCTGTCCTCTGC 58.052 57.895 0.00 0.00 0.00 4.26
3253 3334 8.244113 GTCGATTTTCTGGACCATTAGATTTTT 58.756 33.333 0.00 0.00 0.00 1.94
3254 3335 7.611855 AGTCGATTTTCTGGACCATTAGATTTT 59.388 33.333 0.00 0.00 33.36 1.82
3255 3336 7.112779 AGTCGATTTTCTGGACCATTAGATTT 58.887 34.615 0.00 0.00 33.36 2.17
3256 3337 6.653989 AGTCGATTTTCTGGACCATTAGATT 58.346 36.000 0.00 0.00 33.36 2.40
3257 3338 6.240549 AGTCGATTTTCTGGACCATTAGAT 57.759 37.500 0.00 0.00 33.36 1.98
3258 3339 5.677319 AGTCGATTTTCTGGACCATTAGA 57.323 39.130 0.00 0.00 33.36 2.10
3259 3340 6.743575 AAAGTCGATTTTCTGGACCATTAG 57.256 37.500 0.00 0.00 33.36 1.73
3260 3341 6.596497 GGTAAAGTCGATTTTCTGGACCATTA 59.404 38.462 9.37 0.00 33.36 1.90
3261 3342 5.414765 GGTAAAGTCGATTTTCTGGACCATT 59.585 40.000 9.37 0.00 33.36 3.16
3262 3343 4.941873 GGTAAAGTCGATTTTCTGGACCAT 59.058 41.667 9.37 0.00 33.36 3.55
3263 3344 4.320870 GGTAAAGTCGATTTTCTGGACCA 58.679 43.478 9.37 0.00 33.36 4.02
3264 3345 3.688185 GGGTAAAGTCGATTTTCTGGACC 59.312 47.826 9.37 11.14 33.36 4.46
3265 3346 4.320870 TGGGTAAAGTCGATTTTCTGGAC 58.679 43.478 9.37 2.61 33.10 4.02
3266 3347 4.627284 TGGGTAAAGTCGATTTTCTGGA 57.373 40.909 9.37 0.00 32.01 3.86
3267 3348 5.699097 TTTGGGTAAAGTCGATTTTCTGG 57.301 39.130 9.37 0.00 32.01 3.86
3268 3349 9.855021 ATTATTTTGGGTAAAGTCGATTTTCTG 57.145 29.630 9.37 0.00 32.01 3.02
3278 3359 8.716909 CGCATGAAAAATTATTTTGGGTAAAGT 58.283 29.630 3.51 0.00 38.83 2.66
3279 3360 8.930760 TCGCATGAAAAATTATTTTGGGTAAAG 58.069 29.630 3.51 0.00 38.83 1.85
3280 3361 8.713271 GTCGCATGAAAAATTATTTTGGGTAAA 58.287 29.630 3.51 0.00 38.83 2.01
3281 3362 8.091449 AGTCGCATGAAAAATTATTTTGGGTAA 58.909 29.630 3.51 0.00 38.83 2.85
3282 3363 7.607250 AGTCGCATGAAAAATTATTTTGGGTA 58.393 30.769 3.51 0.00 38.83 3.69
3283 3364 6.463360 AGTCGCATGAAAAATTATTTTGGGT 58.537 32.000 3.51 0.00 38.83 4.51
3284 3365 6.966435 AGTCGCATGAAAAATTATTTTGGG 57.034 33.333 3.51 1.37 38.83 4.12
3285 3366 9.904647 CATAAGTCGCATGAAAAATTATTTTGG 57.095 29.630 3.51 0.00 38.83 3.28
3292 3373 8.076178 GGCTATACATAAGTCGCATGAAAAATT 58.924 33.333 0.00 0.00 0.00 1.82
3293 3374 7.571244 CGGCTATACATAAGTCGCATGAAAAAT 60.571 37.037 0.00 0.00 35.03 1.82
3294 3375 6.292649 CGGCTATACATAAGTCGCATGAAAAA 60.293 38.462 0.00 0.00 35.03 1.94
3295 3376 5.176774 CGGCTATACATAAGTCGCATGAAAA 59.823 40.000 0.00 0.00 35.03 2.29
3296 3377 4.684242 CGGCTATACATAAGTCGCATGAAA 59.316 41.667 0.00 0.00 35.03 2.69
3297 3378 4.234574 CGGCTATACATAAGTCGCATGAA 58.765 43.478 0.00 0.00 35.03 2.57
3298 3379 3.366985 CCGGCTATACATAAGTCGCATGA 60.367 47.826 0.00 0.00 40.65 3.07
3299 3380 2.923655 CCGGCTATACATAAGTCGCATG 59.076 50.000 0.00 0.00 40.65 4.06
3300 3381 2.561419 ACCGGCTATACATAAGTCGCAT 59.439 45.455 0.00 0.00 40.65 4.73
3301 3382 1.958579 ACCGGCTATACATAAGTCGCA 59.041 47.619 0.00 0.00 40.65 5.10
3302 3383 2.030540 TGACCGGCTATACATAAGTCGC 60.031 50.000 0.00 0.00 40.65 5.19
3303 3384 3.909776 TGACCGGCTATACATAAGTCG 57.090 47.619 0.00 0.00 41.62 4.18
3304 3385 7.492352 AAATTTGACCGGCTATACATAAGTC 57.508 36.000 0.00 0.00 0.00 3.01
3305 3386 7.988599 TGTAAATTTGACCGGCTATACATAAGT 59.011 33.333 0.00 0.00 0.00 2.24
3306 3387 8.373048 TGTAAATTTGACCGGCTATACATAAG 57.627 34.615 0.00 0.00 0.00 1.73
3307 3388 8.779303 CATGTAAATTTGACCGGCTATACATAA 58.221 33.333 0.00 0.00 32.97 1.90
3308 3389 7.389330 CCATGTAAATTTGACCGGCTATACATA 59.611 37.037 0.00 0.00 32.97 2.29
3309 3390 6.206634 CCATGTAAATTTGACCGGCTATACAT 59.793 38.462 0.00 4.67 34.13 2.29
3310 3391 5.529430 CCATGTAAATTTGACCGGCTATACA 59.471 40.000 0.00 2.26 0.00 2.29
3311 3392 5.048991 CCCATGTAAATTTGACCGGCTATAC 60.049 44.000 0.00 0.00 0.00 1.47
3312 3393 5.067273 CCCATGTAAATTTGACCGGCTATA 58.933 41.667 0.00 0.00 0.00 1.31
3313 3394 3.888930 CCCATGTAAATTTGACCGGCTAT 59.111 43.478 0.00 0.00 0.00 2.97
3314 3395 3.054287 TCCCATGTAAATTTGACCGGCTA 60.054 43.478 0.00 0.00 0.00 3.93
3315 3396 2.099405 CCCATGTAAATTTGACCGGCT 58.901 47.619 0.00 0.00 0.00 5.52
3316 3397 2.096248 TCCCATGTAAATTTGACCGGC 58.904 47.619 0.00 0.00 0.00 6.13
3317 3398 3.128589 CACTCCCATGTAAATTTGACCGG 59.871 47.826 0.00 0.00 0.00 5.28
3318 3399 3.128589 CCACTCCCATGTAAATTTGACCG 59.871 47.826 0.00 0.00 0.00 4.79
3319 3400 3.119137 GCCACTCCCATGTAAATTTGACC 60.119 47.826 0.00 0.00 0.00 4.02
3320 3401 3.763897 AGCCACTCCCATGTAAATTTGAC 59.236 43.478 0.00 0.00 0.00 3.18
3321 3402 4.046286 AGCCACTCCCATGTAAATTTGA 57.954 40.909 0.00 0.00 0.00 2.69
3322 3403 4.339247 CCTAGCCACTCCCATGTAAATTTG 59.661 45.833 0.00 0.00 0.00 2.32
3323 3404 4.536765 CCTAGCCACTCCCATGTAAATTT 58.463 43.478 0.00 0.00 0.00 1.82
3324 3405 3.688414 GCCTAGCCACTCCCATGTAAATT 60.688 47.826 0.00 0.00 0.00 1.82
3325 3406 2.158608 GCCTAGCCACTCCCATGTAAAT 60.159 50.000 0.00 0.00 0.00 1.40
3326 3407 1.211949 GCCTAGCCACTCCCATGTAAA 59.788 52.381 0.00 0.00 0.00 2.01
3327 3408 0.837272 GCCTAGCCACTCCCATGTAA 59.163 55.000 0.00 0.00 0.00 2.41
3328 3409 0.031111 AGCCTAGCCACTCCCATGTA 60.031 55.000 0.00 0.00 0.00 2.29
3329 3410 0.916358 AAGCCTAGCCACTCCCATGT 60.916 55.000 0.00 0.00 0.00 3.21
3330 3411 0.257039 AAAGCCTAGCCACTCCCATG 59.743 55.000 0.00 0.00 0.00 3.66
3331 3412 1.771255 CTAAAGCCTAGCCACTCCCAT 59.229 52.381 0.00 0.00 0.00 4.00
3332 3413 1.204146 CTAAAGCCTAGCCACTCCCA 58.796 55.000 0.00 0.00 0.00 4.37
3333 3414 0.470341 CCTAAAGCCTAGCCACTCCC 59.530 60.000 0.00 0.00 0.00 4.30
3334 3415 0.179043 GCCTAAAGCCTAGCCACTCC 60.179 60.000 0.00 0.00 34.35 3.85
3335 3416 3.388272 GCCTAAAGCCTAGCCACTC 57.612 57.895 0.00 0.00 34.35 3.51
3345 3426 1.338107 AACCAAACAGGGCCTAAAGC 58.662 50.000 5.28 0.00 43.89 3.51
3346 3427 4.149598 ACTTAACCAAACAGGGCCTAAAG 58.850 43.478 5.28 0.00 43.89 1.85
3347 3428 4.146564 GACTTAACCAAACAGGGCCTAAA 58.853 43.478 5.28 0.00 43.89 1.85
3348 3429 3.499021 GGACTTAACCAAACAGGGCCTAA 60.499 47.826 5.28 0.00 43.89 2.69
3349 3430 2.040679 GGACTTAACCAAACAGGGCCTA 59.959 50.000 5.28 0.00 43.89 3.93
3350 3431 1.203013 GGACTTAACCAAACAGGGCCT 60.203 52.381 0.00 0.00 43.89 5.19
3351 3432 1.203013 AGGACTTAACCAAACAGGGCC 60.203 52.381 0.00 0.00 43.89 5.80
3352 3433 2.287977 AGGACTTAACCAAACAGGGC 57.712 50.000 0.00 0.00 43.89 5.19
3353 3434 3.308188 CCCTAGGACTTAACCAAACAGGG 60.308 52.174 11.48 0.00 43.89 4.45
3354 3435 3.872630 GCCCTAGGACTTAACCAAACAGG 60.873 52.174 11.48 0.00 45.67 4.00
3355 3436 3.009143 AGCCCTAGGACTTAACCAAACAG 59.991 47.826 11.48 0.00 0.00 3.16
3356 3437 2.983898 AGCCCTAGGACTTAACCAAACA 59.016 45.455 11.48 0.00 0.00 2.83
3357 3438 3.715638 AGCCCTAGGACTTAACCAAAC 57.284 47.619 11.48 0.00 0.00 2.93
3358 3439 4.734843 AAAGCCCTAGGACTTAACCAAA 57.265 40.909 11.13 0.00 0.00 3.28
3359 3440 4.734843 AAAAGCCCTAGGACTTAACCAA 57.265 40.909 11.13 0.00 0.00 3.67
3360 3441 4.734843 AAAAAGCCCTAGGACTTAACCA 57.265 40.909 11.13 0.00 0.00 3.67
3381 3462 9.886132 GACTTGAGACTTATAAGTTGGGATAAA 57.114 33.333 18.96 6.99 39.88 1.40
3382 3463 8.483758 GGACTTGAGACTTATAAGTTGGGATAA 58.516 37.037 18.96 8.44 39.88 1.75
3383 3464 7.622081 TGGACTTGAGACTTATAAGTTGGGATA 59.378 37.037 18.96 3.45 39.88 2.59
3384 3465 6.443849 TGGACTTGAGACTTATAAGTTGGGAT 59.556 38.462 18.96 4.56 39.88 3.85
3385 3466 5.783360 TGGACTTGAGACTTATAAGTTGGGA 59.217 40.000 18.96 6.15 39.88 4.37
3386 3467 6.049955 TGGACTTGAGACTTATAAGTTGGG 57.950 41.667 18.96 10.37 39.88 4.12
3387 3468 9.667107 TTTATGGACTTGAGACTTATAAGTTGG 57.333 33.333 18.96 10.07 39.88 3.77
3393 3474 9.886132 GGACTTTTTATGGACTTGAGACTTATA 57.114 33.333 0.00 0.00 0.00 0.98
3394 3475 7.829706 GGGACTTTTTATGGACTTGAGACTTAT 59.170 37.037 0.00 0.00 0.00 1.73
3395 3476 7.017254 AGGGACTTTTTATGGACTTGAGACTTA 59.983 37.037 0.00 0.00 27.25 2.24
3396 3477 6.004574 GGGACTTTTTATGGACTTGAGACTT 58.995 40.000 0.00 0.00 0.00 3.01
3397 3478 5.310857 AGGGACTTTTTATGGACTTGAGACT 59.689 40.000 0.00 0.00 27.25 3.24
3398 3479 5.561679 AGGGACTTTTTATGGACTTGAGAC 58.438 41.667 0.00 0.00 27.25 3.36
3399 3480 5.843019 AGGGACTTTTTATGGACTTGAGA 57.157 39.130 0.00 0.00 27.25 3.27
3400 3481 6.595716 CAGTAGGGACTTTTTATGGACTTGAG 59.404 42.308 0.00 0.00 41.75 3.02
3401 3482 6.043938 ACAGTAGGGACTTTTTATGGACTTGA 59.956 38.462 0.00 0.00 41.75 3.02
3402 3483 6.238648 ACAGTAGGGACTTTTTATGGACTTG 58.761 40.000 0.00 0.00 41.75 3.16
3403 3484 6.449830 ACAGTAGGGACTTTTTATGGACTT 57.550 37.500 0.00 0.00 41.75 3.01
3404 3485 6.449830 AACAGTAGGGACTTTTTATGGACT 57.550 37.500 0.00 0.00 41.75 3.85
3405 3486 6.072119 CCAAACAGTAGGGACTTTTTATGGAC 60.072 42.308 0.00 0.00 41.75 4.02
3406 3487 6.007703 CCAAACAGTAGGGACTTTTTATGGA 58.992 40.000 0.00 0.00 41.75 3.41
3407 3488 5.773176 ACCAAACAGTAGGGACTTTTTATGG 59.227 40.000 0.00 0.00 41.75 2.74
3408 3489 6.894339 ACCAAACAGTAGGGACTTTTTATG 57.106 37.500 0.00 0.00 41.75 1.90
3409 3490 6.944290 GGTACCAAACAGTAGGGACTTTTTAT 59.056 38.462 7.15 0.00 38.84 1.40
3410 3491 6.101588 AGGTACCAAACAGTAGGGACTTTTTA 59.898 38.462 15.94 0.00 38.84 1.52
3411 3492 5.103813 AGGTACCAAACAGTAGGGACTTTTT 60.104 40.000 15.94 0.00 38.84 1.94
3412 3493 4.414514 AGGTACCAAACAGTAGGGACTTTT 59.585 41.667 15.94 0.00 38.84 2.27
3413 3494 3.978672 AGGTACCAAACAGTAGGGACTTT 59.021 43.478 15.94 0.00 38.84 2.66
3414 3495 3.326880 CAGGTACCAAACAGTAGGGACTT 59.673 47.826 15.94 0.00 38.84 3.01
3415 3496 2.904434 CAGGTACCAAACAGTAGGGACT 59.096 50.000 15.94 0.00 38.84 3.85
3416 3497 2.027469 CCAGGTACCAAACAGTAGGGAC 60.027 54.545 15.94 0.00 38.06 4.46
3417 3498 2.262637 CCAGGTACCAAACAGTAGGGA 58.737 52.381 15.94 0.00 0.00 4.20
3418 3499 1.280998 CCCAGGTACCAAACAGTAGGG 59.719 57.143 15.94 7.85 0.00 3.53
3419 3500 2.262637 TCCCAGGTACCAAACAGTAGG 58.737 52.381 15.94 2.64 0.00 3.18
3420 3501 4.569719 AATCCCAGGTACCAAACAGTAG 57.430 45.455 15.94 0.00 0.00 2.57
3421 3502 6.645884 ATAAATCCCAGGTACCAAACAGTA 57.354 37.500 15.94 0.00 0.00 2.74
3422 3503 3.895704 AAATCCCAGGTACCAAACAGT 57.104 42.857 15.94 0.00 0.00 3.55
3423 3504 7.282450 GTCTTATAAATCCCAGGTACCAAACAG 59.718 40.741 15.94 0.00 0.00 3.16
3424 3505 7.114095 GTCTTATAAATCCCAGGTACCAAACA 58.886 38.462 15.94 0.00 0.00 2.83
3425 3506 6.544931 GGTCTTATAAATCCCAGGTACCAAAC 59.455 42.308 15.94 0.00 0.00 2.93
3426 3507 6.354126 GGGTCTTATAAATCCCAGGTACCAAA 60.354 42.308 15.94 0.00 39.68 3.28
3427 3508 5.133153 GGGTCTTATAAATCCCAGGTACCAA 59.867 44.000 15.94 0.00 39.68 3.67
3428 3509 4.661709 GGGTCTTATAAATCCCAGGTACCA 59.338 45.833 15.94 0.00 39.68 3.25
3429 3510 4.912133 AGGGTCTTATAAATCCCAGGTACC 59.088 45.833 20.14 2.73 42.12 3.34
3430 3511 7.809880 ATAGGGTCTTATAAATCCCAGGTAC 57.190 40.000 20.14 0.00 42.12 3.34
3431 3512 9.556772 CTTATAGGGTCTTATAAATCCCAGGTA 57.443 37.037 20.14 9.45 42.12 3.08
3432 3513 8.246615 TCTTATAGGGTCTTATAAATCCCAGGT 58.753 37.037 20.14 11.48 42.12 4.00
3433 3514 8.541234 GTCTTATAGGGTCTTATAAATCCCAGG 58.459 40.741 20.14 6.75 42.12 4.45
3434 3515 8.541234 GGTCTTATAGGGTCTTATAAATCCCAG 58.459 40.741 20.14 12.16 42.12 4.45
3435 3516 8.020253 TGGTCTTATAGGGTCTTATAAATCCCA 58.980 37.037 20.14 10.85 42.12 4.37
3436 3517 8.445361 TGGTCTTATAGGGTCTTATAAATCCC 57.555 38.462 13.70 13.70 40.16 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.