Multiple sequence alignment - TraesCS3B01G391600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G391600 chr3B 100.000 3075 0 0 1 3075 617255211 617258285 0.000000e+00 5679.0
1 TraesCS3B01G391600 chr3B 91.176 68 6 0 1 68 60416688 60416621 3.260000e-15 93.5
2 TraesCS3B01G391600 chr3A 89.047 2456 137 65 218 2594 606823273 606825675 0.000000e+00 2924.0
3 TraesCS3B01G391600 chr3A 86.154 455 34 12 2624 3075 606825674 606826102 6.010000e-127 464.0
4 TraesCS3B01G391600 chr3D 87.593 2144 126 56 739 2828 463804836 463806893 0.000000e+00 2357.0
5 TraesCS3B01G391600 chr3D 88.158 228 16 8 431 653 463804506 463804727 8.460000e-66 261.0
6 TraesCS3B01G391600 chr4D 92.647 68 5 0 1 68 435402785 435402852 7.020000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G391600 chr3B 617255211 617258285 3074 False 5679 5679 100.0000 1 3075 1 chr3B.!!$F1 3074
1 TraesCS3B01G391600 chr3A 606823273 606826102 2829 False 1694 2924 87.6005 218 3075 2 chr3A.!!$F1 2857
2 TraesCS3B01G391600 chr3D 463804506 463806893 2387 False 1309 2357 87.8755 431 2828 2 chr3D.!!$F1 2397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.031817 TACCTACCCCAGCAGTACCC 60.032 60.0 0.00 0.0 0.0 3.69 F
432 441 0.176680 GCATCACGTGACCTGATCCT 59.823 55.0 22.71 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 2049 0.615850 CCAGGTTCTCCTTGTCCTCC 59.384 60.0 0.0 0.0 43.07 4.30 R
2143 2260 0.109272 CGCTGACACCGACATACAGT 60.109 55.0 0.0 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.514721 TGATAACAAAGAATCATACCTACCCC 58.485 38.462 0.00 0.00 0.00 4.95
26 27 5.789574 AACAAAGAATCATACCTACCCCA 57.210 39.130 0.00 0.00 0.00 4.96
27 28 5.373812 ACAAAGAATCATACCTACCCCAG 57.626 43.478 0.00 0.00 0.00 4.45
28 29 4.137543 CAAAGAATCATACCTACCCCAGC 58.862 47.826 0.00 0.00 0.00 4.85
29 30 3.060479 AGAATCATACCTACCCCAGCA 57.940 47.619 0.00 0.00 0.00 4.41
30 31 2.975489 AGAATCATACCTACCCCAGCAG 59.025 50.000 0.00 0.00 0.00 4.24
31 32 2.496679 ATCATACCTACCCCAGCAGT 57.503 50.000 0.00 0.00 0.00 4.40
32 33 3.630625 ATCATACCTACCCCAGCAGTA 57.369 47.619 0.00 0.00 0.00 2.74
33 34 2.674420 TCATACCTACCCCAGCAGTAC 58.326 52.381 0.00 0.00 0.00 2.73
34 35 1.692519 CATACCTACCCCAGCAGTACC 59.307 57.143 0.00 0.00 0.00 3.34
35 36 0.031817 TACCTACCCCAGCAGTACCC 60.032 60.000 0.00 0.00 0.00 3.69
36 37 1.003051 CCTACCCCAGCAGTACCCT 59.997 63.158 0.00 0.00 0.00 4.34
37 38 0.620700 CCTACCCCAGCAGTACCCTT 60.621 60.000 0.00 0.00 0.00 3.95
38 39 0.541863 CTACCCCAGCAGTACCCTTG 59.458 60.000 0.00 0.00 0.00 3.61
39 40 0.912487 TACCCCAGCAGTACCCTTGG 60.912 60.000 0.00 0.00 0.00 3.61
40 41 2.044946 CCCAGCAGTACCCTTGGC 60.045 66.667 0.00 0.00 0.00 4.52
41 42 2.044946 CCAGCAGTACCCTTGGCC 60.045 66.667 0.00 0.00 0.00 5.36
42 43 2.756400 CAGCAGTACCCTTGGCCA 59.244 61.111 0.00 0.00 0.00 5.36
43 44 1.675641 CAGCAGTACCCTTGGCCAC 60.676 63.158 3.88 0.00 0.00 5.01
44 45 2.361230 GCAGTACCCTTGGCCACC 60.361 66.667 3.88 0.00 0.00 4.61
45 46 2.046314 CAGTACCCTTGGCCACCG 60.046 66.667 3.88 0.00 0.00 4.94
46 47 2.203877 AGTACCCTTGGCCACCGA 60.204 61.111 3.88 0.00 0.00 4.69
47 48 1.844289 AGTACCCTTGGCCACCGAA 60.844 57.895 3.88 0.00 0.00 4.30
48 49 1.205460 AGTACCCTTGGCCACCGAAT 61.205 55.000 3.88 0.00 0.00 3.34
49 50 0.746923 GTACCCTTGGCCACCGAATC 60.747 60.000 3.88 0.00 0.00 2.52
50 51 1.202099 TACCCTTGGCCACCGAATCA 61.202 55.000 3.88 0.00 0.00 2.57
51 52 1.076777 CCCTTGGCCACCGAATCAT 60.077 57.895 3.88 0.00 0.00 2.45
52 53 0.684153 CCCTTGGCCACCGAATCATT 60.684 55.000 3.88 0.00 0.00 2.57
53 54 1.409521 CCCTTGGCCACCGAATCATTA 60.410 52.381 3.88 0.00 0.00 1.90
54 55 1.949525 CCTTGGCCACCGAATCATTAG 59.050 52.381 3.88 0.00 0.00 1.73
55 56 2.643551 CTTGGCCACCGAATCATTAGT 58.356 47.619 3.88 0.00 0.00 2.24
56 57 3.433031 CCTTGGCCACCGAATCATTAGTA 60.433 47.826 3.88 0.00 0.00 1.82
57 58 4.389374 CTTGGCCACCGAATCATTAGTAT 58.611 43.478 3.88 0.00 0.00 2.12
58 59 4.431416 TGGCCACCGAATCATTAGTATT 57.569 40.909 0.00 0.00 0.00 1.89
59 60 5.554437 TGGCCACCGAATCATTAGTATTA 57.446 39.130 0.00 0.00 0.00 0.98
60 61 5.931294 TGGCCACCGAATCATTAGTATTAA 58.069 37.500 0.00 0.00 0.00 1.40
61 62 6.358178 TGGCCACCGAATCATTAGTATTAAA 58.642 36.000 0.00 0.00 0.00 1.52
62 63 7.001674 TGGCCACCGAATCATTAGTATTAAAT 58.998 34.615 0.00 0.00 0.00 1.40
63 64 7.504238 TGGCCACCGAATCATTAGTATTAAATT 59.496 33.333 0.00 0.00 0.00 1.82
64 65 8.357402 GGCCACCGAATCATTAGTATTAAATTT 58.643 33.333 0.00 0.00 0.00 1.82
65 66 9.180678 GCCACCGAATCATTAGTATTAAATTTG 57.819 33.333 0.00 0.00 0.00 2.32
88 89 8.684386 TTGACAAGTCTCAATTAAATGTACCA 57.316 30.769 1.53 0.00 0.00 3.25
89 90 8.094798 TGACAAGTCTCAATTAAATGTACCAC 57.905 34.615 1.53 0.00 0.00 4.16
90 91 7.095397 TGACAAGTCTCAATTAAATGTACCACG 60.095 37.037 1.53 0.00 0.00 4.94
91 92 6.708949 ACAAGTCTCAATTAAATGTACCACGT 59.291 34.615 0.00 0.00 0.00 4.49
92 93 7.874016 ACAAGTCTCAATTAAATGTACCACGTA 59.126 33.333 0.00 0.00 0.00 3.57
93 94 8.714179 CAAGTCTCAATTAAATGTACCACGTAA 58.286 33.333 0.00 0.00 0.00 3.18
94 95 8.248117 AGTCTCAATTAAATGTACCACGTAAC 57.752 34.615 0.00 0.00 0.00 2.50
95 96 7.874016 AGTCTCAATTAAATGTACCACGTAACA 59.126 33.333 0.00 0.00 0.00 2.41
96 97 8.497554 GTCTCAATTAAATGTACCACGTAACAA 58.502 33.333 0.00 0.00 0.00 2.83
97 98 9.053840 TCTCAATTAAATGTACCACGTAACAAA 57.946 29.630 0.00 0.00 0.00 2.83
98 99 9.109533 CTCAATTAAATGTACCACGTAACAAAC 57.890 33.333 0.00 0.00 0.00 2.93
99 100 8.618677 TCAATTAAATGTACCACGTAACAAACA 58.381 29.630 0.00 0.00 0.00 2.83
100 101 8.897809 CAATTAAATGTACCACGTAACAAACAG 58.102 33.333 0.00 0.00 0.00 3.16
101 102 7.783090 TTAAATGTACCACGTAACAAACAGA 57.217 32.000 0.00 0.00 0.00 3.41
102 103 6.680874 AAATGTACCACGTAACAAACAGAA 57.319 33.333 0.00 0.00 0.00 3.02
103 104 6.680874 AATGTACCACGTAACAAACAGAAA 57.319 33.333 0.00 0.00 0.00 2.52
104 105 6.680874 ATGTACCACGTAACAAACAGAAAA 57.319 33.333 0.00 0.00 0.00 2.29
105 106 6.680874 TGTACCACGTAACAAACAGAAAAT 57.319 33.333 0.00 0.00 0.00 1.82
106 107 6.717413 TGTACCACGTAACAAACAGAAAATC 58.283 36.000 0.00 0.00 0.00 2.17
107 108 5.177725 ACCACGTAACAAACAGAAAATCC 57.822 39.130 0.00 0.00 0.00 3.01
108 109 4.885325 ACCACGTAACAAACAGAAAATCCT 59.115 37.500 0.00 0.00 0.00 3.24
109 110 6.056884 ACCACGTAACAAACAGAAAATCCTA 58.943 36.000 0.00 0.00 0.00 2.94
110 111 6.543100 ACCACGTAACAAACAGAAAATCCTAA 59.457 34.615 0.00 0.00 0.00 2.69
111 112 7.067251 ACCACGTAACAAACAGAAAATCCTAAA 59.933 33.333 0.00 0.00 0.00 1.85
112 113 7.916450 CCACGTAACAAACAGAAAATCCTAAAA 59.084 33.333 0.00 0.00 0.00 1.52
113 114 9.458374 CACGTAACAAACAGAAAATCCTAAAAT 57.542 29.630 0.00 0.00 0.00 1.82
142 143 8.996024 TGTACGAAACTCAATAATTGATCTCA 57.004 30.769 0.00 0.00 39.30 3.27
143 144 8.869897 TGTACGAAACTCAATAATTGATCTCAC 58.130 33.333 0.00 0.00 39.30 3.51
144 145 6.993878 ACGAAACTCAATAATTGATCTCACG 58.006 36.000 0.00 0.00 39.30 4.35
145 146 6.811665 ACGAAACTCAATAATTGATCTCACGA 59.188 34.615 0.00 0.00 39.30 4.35
146 147 7.330946 ACGAAACTCAATAATTGATCTCACGAA 59.669 33.333 0.00 0.00 39.30 3.85
147 148 8.331022 CGAAACTCAATAATTGATCTCACGAAT 58.669 33.333 0.00 0.00 39.30 3.34
153 154 9.927668 TCAATAATTGATCTCACGAATATAGCA 57.072 29.630 0.00 0.00 34.08 3.49
155 156 6.718454 AATTGATCTCACGAATATAGCAGC 57.282 37.500 0.00 0.00 0.00 5.25
156 157 3.826466 TGATCTCACGAATATAGCAGCG 58.174 45.455 0.00 0.00 0.00 5.18
157 158 3.502211 TGATCTCACGAATATAGCAGCGA 59.498 43.478 0.00 0.00 0.00 4.93
158 159 3.269486 TCTCACGAATATAGCAGCGAC 57.731 47.619 0.00 0.00 0.00 5.19
159 160 2.879026 TCTCACGAATATAGCAGCGACT 59.121 45.455 0.00 0.00 0.00 4.18
160 161 2.976509 CTCACGAATATAGCAGCGACTG 59.023 50.000 0.00 2.92 34.12 3.51
161 162 2.616842 TCACGAATATAGCAGCGACTGA 59.383 45.455 10.46 0.00 32.44 3.41
162 163 2.976509 CACGAATATAGCAGCGACTGAG 59.023 50.000 10.46 0.00 32.44 3.35
163 164 2.030717 ACGAATATAGCAGCGACTGAGG 60.031 50.000 10.46 0.00 32.44 3.86
164 165 2.333014 GAATATAGCAGCGACTGAGGC 58.667 52.381 10.46 0.00 32.44 4.70
165 166 1.332195 ATATAGCAGCGACTGAGGCA 58.668 50.000 10.46 0.00 32.44 4.75
166 167 1.332195 TATAGCAGCGACTGAGGCAT 58.668 50.000 10.46 0.00 32.44 4.40
167 168 1.332195 ATAGCAGCGACTGAGGCATA 58.668 50.000 10.46 0.00 32.44 3.14
168 169 1.111277 TAGCAGCGACTGAGGCATAA 58.889 50.000 10.46 0.00 32.44 1.90
169 170 0.460987 AGCAGCGACTGAGGCATAAC 60.461 55.000 10.46 0.00 32.44 1.89
170 171 0.740868 GCAGCGACTGAGGCATAACA 60.741 55.000 10.46 0.00 32.44 2.41
171 172 1.725641 CAGCGACTGAGGCATAACAA 58.274 50.000 1.18 0.00 32.44 2.83
172 173 2.076100 CAGCGACTGAGGCATAACAAA 58.924 47.619 1.18 0.00 32.44 2.83
173 174 2.094894 CAGCGACTGAGGCATAACAAAG 59.905 50.000 1.18 0.00 32.44 2.77
174 175 2.076863 GCGACTGAGGCATAACAAAGT 58.923 47.619 0.00 0.00 0.00 2.66
175 176 2.094417 GCGACTGAGGCATAACAAAGTC 59.906 50.000 0.00 0.00 0.00 3.01
176 177 3.589988 CGACTGAGGCATAACAAAGTCT 58.410 45.455 0.00 0.00 33.49 3.24
177 178 3.369147 CGACTGAGGCATAACAAAGTCTG 59.631 47.826 0.00 0.00 33.49 3.51
178 179 4.569943 GACTGAGGCATAACAAAGTCTGA 58.430 43.478 0.00 0.00 33.02 3.27
179 180 4.573900 ACTGAGGCATAACAAAGTCTGAG 58.426 43.478 0.00 0.00 0.00 3.35
180 181 4.040952 ACTGAGGCATAACAAAGTCTGAGT 59.959 41.667 0.00 0.00 29.03 3.41
181 182 4.569943 TGAGGCATAACAAAGTCTGAGTC 58.430 43.478 0.00 0.00 0.00 3.36
182 183 3.935828 GAGGCATAACAAAGTCTGAGTCC 59.064 47.826 0.00 0.00 0.00 3.85
183 184 3.327757 AGGCATAACAAAGTCTGAGTCCA 59.672 43.478 0.00 0.00 0.00 4.02
184 185 3.437049 GGCATAACAAAGTCTGAGTCCAC 59.563 47.826 0.00 0.00 0.00 4.02
185 186 4.319177 GCATAACAAAGTCTGAGTCCACT 58.681 43.478 0.00 0.00 0.00 4.00
186 187 4.153117 GCATAACAAAGTCTGAGTCCACTG 59.847 45.833 0.00 0.00 0.00 3.66
187 188 5.541845 CATAACAAAGTCTGAGTCCACTGA 58.458 41.667 0.00 0.00 0.00 3.41
188 189 3.742433 ACAAAGTCTGAGTCCACTGAG 57.258 47.619 0.00 0.00 0.00 3.35
189 190 3.300388 ACAAAGTCTGAGTCCACTGAGA 58.700 45.455 0.00 0.00 33.86 3.27
198 199 3.742433 AGTCCACTGAGACTTGACAAG 57.258 47.619 13.77 13.77 44.83 3.16
199 200 3.300388 AGTCCACTGAGACTTGACAAGA 58.700 45.455 21.95 0.00 44.83 3.02
200 201 3.068873 AGTCCACTGAGACTTGACAAGAC 59.931 47.826 21.95 15.39 44.83 3.01
201 202 3.068873 GTCCACTGAGACTTGACAAGACT 59.931 47.826 21.95 19.94 36.25 3.24
202 203 3.068732 TCCACTGAGACTTGACAAGACTG 59.931 47.826 22.13 12.56 33.75 3.51
203 204 3.068732 CCACTGAGACTTGACAAGACTGA 59.931 47.826 22.13 14.35 33.75 3.41
204 205 4.262377 CCACTGAGACTTGACAAGACTGAT 60.262 45.833 22.13 6.92 33.75 2.90
205 206 5.295950 CACTGAGACTTGACAAGACTGATT 58.704 41.667 22.13 7.84 33.75 2.57
206 207 5.177142 CACTGAGACTTGACAAGACTGATTG 59.823 44.000 22.13 15.08 33.75 2.67
207 208 5.163364 ACTGAGACTTGACAAGACTGATTGT 60.163 40.000 22.13 12.75 45.89 2.71
208 209 5.052481 TGAGACTTGACAAGACTGATTGTG 58.948 41.667 22.13 0.00 43.32 3.33
209 210 5.163416 TGAGACTTGACAAGACTGATTGTGA 60.163 40.000 22.13 0.00 43.32 3.58
210 211 5.862845 AGACTTGACAAGACTGATTGTGAT 58.137 37.500 21.95 0.00 43.32 3.06
211 212 6.294473 AGACTTGACAAGACTGATTGTGATT 58.706 36.000 21.95 0.00 43.32 2.57
212 213 6.769822 AGACTTGACAAGACTGATTGTGATTT 59.230 34.615 21.95 0.00 43.32 2.17
213 214 6.732154 ACTTGACAAGACTGATTGTGATTTG 58.268 36.000 21.95 0.00 43.32 2.32
214 215 6.319658 ACTTGACAAGACTGATTGTGATTTGT 59.680 34.615 21.95 0.00 43.32 2.83
215 216 7.498900 ACTTGACAAGACTGATTGTGATTTGTA 59.501 33.333 21.95 0.00 43.32 2.41
216 217 7.189693 TGACAAGACTGATTGTGATTTGTAC 57.810 36.000 7.53 0.00 43.32 2.90
225 226 5.293324 TGATTGTGATTTGTACGTAGATGCC 59.707 40.000 0.00 0.00 0.00 4.40
238 239 1.269958 AGATGCCAGTGACACTGCTA 58.730 50.000 27.09 18.47 44.63 3.49
241 242 1.738099 GCCAGTGACACTGCTACGG 60.738 63.158 27.09 15.85 44.63 4.02
245 246 1.066858 CAGTGACACTGCTACGGGAAT 60.067 52.381 22.06 0.00 39.62 3.01
252 253 3.381908 ACACTGCTACGGGAATAGAGAAG 59.618 47.826 0.00 0.00 0.00 2.85
258 259 0.460311 CGGGAATAGAGAAGCGTGGT 59.540 55.000 0.00 0.00 0.00 4.16
348 349 2.443168 TGGTACACCATGTCACGGT 58.557 52.632 0.00 0.00 42.01 4.83
360 361 2.089936 TCACGGTGCGACGCATAAC 61.090 57.895 27.23 17.62 41.91 1.89
427 428 3.490759 GCCGCATCACGTGACCTG 61.491 66.667 22.71 17.47 41.42 4.00
432 441 0.176680 GCATCACGTGACCTGATCCT 59.823 55.000 22.71 0.00 0.00 3.24
443 452 2.685017 TGATCCTGCCTGCCGACT 60.685 61.111 0.00 0.00 0.00 4.18
502 511 1.824272 CGTCCAACCGGTTGACGTTC 61.824 60.000 41.95 25.42 42.93 3.95
531 548 3.699894 CACTCCACTCGCTGCCCT 61.700 66.667 0.00 0.00 0.00 5.19
564 581 3.433615 CGAAGCCACTAGAAACAAGAAGG 59.566 47.826 0.00 0.00 0.00 3.46
647 668 1.486726 CCCTCCAAATAAGCTCGTCCT 59.513 52.381 0.00 0.00 0.00 3.85
685 724 0.729140 CCATTTTTGCTCCGTGCGTC 60.729 55.000 0.00 0.00 46.63 5.19
791 848 3.580319 GGGGTGGAGTGGTTGGCT 61.580 66.667 0.00 0.00 0.00 4.75
900 987 1.876416 CGCCTTGTTATATCCACCCCG 60.876 57.143 0.00 0.00 0.00 5.73
902 989 1.142060 CCTTGTTATATCCACCCCGCA 59.858 52.381 0.00 0.00 0.00 5.69
903 990 2.218603 CTTGTTATATCCACCCCGCAC 58.781 52.381 0.00 0.00 0.00 5.34
904 991 0.470766 TGTTATATCCACCCCGCACC 59.529 55.000 0.00 0.00 0.00 5.01
932 1019 4.292178 GATCCTCCTCGGCGGCAG 62.292 72.222 10.53 5.60 0.00 4.85
1173 1279 6.566187 CGTTTCATTTTCATGGTGTACCGTTA 60.566 38.462 0.00 0.00 39.43 3.18
1180 1286 1.624336 TGGTGTACCGTTACTCTGCT 58.376 50.000 0.00 0.00 39.43 4.24
1181 1287 1.965643 TGGTGTACCGTTACTCTGCTT 59.034 47.619 0.00 0.00 39.43 3.91
1183 1289 3.573538 TGGTGTACCGTTACTCTGCTTAA 59.426 43.478 0.00 0.00 39.43 1.85
1185 1291 4.171754 GTGTACCGTTACTCTGCTTAAGG 58.828 47.826 4.29 0.00 0.00 2.69
1189 1295 2.354805 CCGTTACTCTGCTTAAGGCCTT 60.355 50.000 24.18 24.18 40.92 4.35
1203 1309 1.077993 AGGCCTTACAGAGAGAGTGGT 59.922 52.381 0.00 0.00 0.00 4.16
1205 1311 3.097614 GGCCTTACAGAGAGAGTGGTTA 58.902 50.000 0.00 0.00 0.00 2.85
1206 1312 3.707102 GGCCTTACAGAGAGAGTGGTTAT 59.293 47.826 0.00 0.00 0.00 1.89
1207 1313 4.442192 GGCCTTACAGAGAGAGTGGTTATG 60.442 50.000 0.00 0.00 0.00 1.90
1208 1314 4.442192 GCCTTACAGAGAGAGTGGTTATGG 60.442 50.000 0.00 0.00 0.00 2.74
1221 1327 2.779430 TGGTTATGGATGCAGGATGACT 59.221 45.455 0.00 0.00 39.69 3.41
1355 1461 0.323908 AGGTGACCTTCTCCCTCTCG 60.324 60.000 0.00 0.00 30.62 4.04
1359 1471 1.203013 TGACCTTCTCCCTCTCGTTCA 60.203 52.381 0.00 0.00 0.00 3.18
1387 1499 2.606795 CGGATCGATGCTCTTCTCTTCC 60.607 54.545 15.31 0.00 0.00 3.46
1425 1537 4.240103 CGGGGCAGCATCGATGGA 62.240 66.667 26.00 0.00 0.00 3.41
1553 1665 2.046217 GTTCCAGAAGGACCGGGC 60.046 66.667 6.32 0.21 45.73 6.13
1626 1738 3.550820 TCTCGATCTTCTCCTCTTCCTG 58.449 50.000 0.00 0.00 0.00 3.86
1652 1764 7.636359 GCACACGTAATTCATTCTTATTCAGTC 59.364 37.037 0.00 0.00 0.00 3.51
1659 1772 8.457238 AATTCATTCTTATTCAGTCCTTAGGC 57.543 34.615 0.00 0.00 0.00 3.93
1932 2048 4.816984 GGAGGAGGACGGCGAGGA 62.817 72.222 16.62 0.00 0.00 3.71
1933 2049 3.213402 GAGGAGGACGGCGAGGAG 61.213 72.222 16.62 0.00 0.00 3.69
2136 2253 5.123502 CCCACTACTGTACTGTACTGTACTG 59.876 48.000 30.70 30.70 42.22 2.74
2138 2255 6.875726 CCACTACTGTACTGTACTGTACTGTA 59.124 42.308 34.30 34.30 46.32 2.74
2172 2289 1.016130 GGTGTCAGCGTGTGATCTGG 61.016 60.000 0.00 0.00 37.56 3.86
2186 2303 6.169094 GTGTGATCTGGATCTGAAGAAGAAA 58.831 40.000 11.23 0.00 38.79 2.52
2188 2305 6.877855 TGTGATCTGGATCTGAAGAAGAAAAG 59.122 38.462 11.23 0.00 38.79 2.27
2189 2306 5.879223 TGATCTGGATCTGAAGAAGAAAAGC 59.121 40.000 11.23 0.00 38.79 3.51
2190 2307 4.248859 TCTGGATCTGAAGAAGAAAAGCG 58.751 43.478 0.00 0.00 38.79 4.68
2191 2308 3.999663 CTGGATCTGAAGAAGAAAAGCGT 59.000 43.478 0.00 0.00 38.79 5.07
2193 2310 3.748568 GGATCTGAAGAAGAAAAGCGTGT 59.251 43.478 0.00 0.00 38.79 4.49
2194 2311 4.377841 GGATCTGAAGAAGAAAAGCGTGTG 60.378 45.833 0.00 0.00 38.79 3.82
2235 2358 2.076100 TGACGTTGCTGAATGCTTAGG 58.924 47.619 0.00 0.00 43.37 2.69
2236 2359 0.804989 ACGTTGCTGAATGCTTAGGC 59.195 50.000 0.00 0.00 43.37 3.93
2282 2405 4.787083 CGTGTCGTACTTGTACATTCTCTC 59.213 45.833 10.91 0.00 0.00 3.20
2289 2412 4.023980 ACTTGTACATTCTCTCGATCCCA 58.976 43.478 0.00 0.00 0.00 4.37
2290 2413 4.142138 ACTTGTACATTCTCTCGATCCCAC 60.142 45.833 0.00 0.00 0.00 4.61
2297 2420 0.818296 CTCTCGATCCCACGTTCCTT 59.182 55.000 0.00 0.00 34.70 3.36
2305 2428 0.535102 CCCACGTTCCTTGAGCAACT 60.535 55.000 0.00 0.00 0.00 3.16
2313 2442 2.851195 TCCTTGAGCAACTTCTGAACC 58.149 47.619 0.00 0.00 0.00 3.62
2327 2456 2.933906 TCTGAACCGTGTTCAAACTGTC 59.066 45.455 16.68 0.00 0.00 3.51
2328 2457 1.661617 TGAACCGTGTTCAAACTGTCG 59.338 47.619 14.54 0.00 0.00 4.35
2331 2460 1.083657 CGTGTTCAAACTGTCGCCG 60.084 57.895 0.00 0.00 0.00 6.46
2365 2494 7.552687 TGTGTTCCTATGGTCTGAATTTGATAC 59.447 37.037 0.00 0.00 0.00 2.24
2366 2495 7.770897 GTGTTCCTATGGTCTGAATTTGATACT 59.229 37.037 0.00 0.00 0.00 2.12
2367 2496 8.988060 TGTTCCTATGGTCTGAATTTGATACTA 58.012 33.333 0.00 0.00 0.00 1.82
2391 2520 4.223320 ACATGAATGAACACGGAACAAC 57.777 40.909 0.00 0.00 0.00 3.32
2441 2570 5.296780 TCTCAACTTGACAAATGAACAGGTC 59.703 40.000 5.22 0.00 0.00 3.85
2444 2573 3.632145 ACTTGACAAATGAACAGGTCCAC 59.368 43.478 0.00 0.00 0.00 4.02
2447 2577 3.214328 GACAAATGAACAGGTCCACAGT 58.786 45.455 0.00 0.00 0.00 3.55
2594 2735 1.606313 GCAAGGCTTACCCCAGCAA 60.606 57.895 0.00 0.00 42.10 3.91
2608 2757 0.602638 CAGCAAGACTACACGGGCAA 60.603 55.000 0.00 0.00 0.00 4.52
2612 2761 0.834687 AAGACTACACGGGCAAGGGA 60.835 55.000 0.00 0.00 0.00 4.20
2620 2769 1.067635 CACGGGCAAGGGAAAATTCAG 60.068 52.381 0.00 0.00 0.00 3.02
2624 2773 1.344114 GGCAAGGGAAAATTCAGCACA 59.656 47.619 0.00 0.00 0.00 4.57
2625 2774 2.407090 GCAAGGGAAAATTCAGCACAC 58.593 47.619 0.00 0.00 0.00 3.82
2626 2775 2.224018 GCAAGGGAAAATTCAGCACACA 60.224 45.455 0.00 0.00 0.00 3.72
2627 2776 3.645884 CAAGGGAAAATTCAGCACACAG 58.354 45.455 0.00 0.00 0.00 3.66
2628 2777 2.242043 AGGGAAAATTCAGCACACAGG 58.758 47.619 0.00 0.00 0.00 4.00
2629 2778 2.158475 AGGGAAAATTCAGCACACAGGA 60.158 45.455 0.00 0.00 0.00 3.86
2630 2779 2.229784 GGGAAAATTCAGCACACAGGAG 59.770 50.000 0.00 0.00 0.00 3.69
2646 2795 1.905215 AGGAGGATCACAGAACACAGG 59.095 52.381 0.00 0.00 36.25 4.00
2677 2827 7.011576 TGTTGCACGACAGTTTCTCTATAAAAA 59.988 33.333 0.00 0.00 0.00 1.94
2695 2845 4.339872 AAAACCCCGGTGTAAAATTTCC 57.660 40.909 0.00 0.00 0.00 3.13
2709 2859 8.303876 GTGTAAAATTTCCTCATCAAAGCCTAA 58.696 33.333 0.00 0.00 0.00 2.69
2715 2865 6.575162 TTCCTCATCAAAGCCTAACTTTTC 57.425 37.500 0.00 0.00 46.73 2.29
2730 2880 3.680789 ACTTTTCACGCTTTCAGTTTCG 58.319 40.909 0.00 0.00 0.00 3.46
2739 2889 1.264288 CTTTCAGTTTCGGTGCAGACC 59.736 52.381 0.00 0.00 39.14 3.85
2813 2963 4.221041 TCACATGGTTTACGGTCATGACTA 59.779 41.667 24.50 8.20 40.28 2.59
2875 3025 7.456684 CAATAGTTGCTACACTTGCTAGTAG 57.543 40.000 0.00 0.00 40.45 2.57
2896 3046 2.764572 GCACTAGTAGCCAGGGTAAAGA 59.235 50.000 13.79 0.00 0.00 2.52
2911 3061 2.997485 AAAGAAGAGCGCCAAATGAC 57.003 45.000 2.29 0.00 0.00 3.06
2912 3062 0.798776 AAGAAGAGCGCCAAATGACG 59.201 50.000 2.29 0.00 0.00 4.35
2945 3095 2.167075 GCTGCCCAAGAAAATGCATAGT 59.833 45.455 0.00 0.00 32.53 2.12
2946 3096 3.736126 GCTGCCCAAGAAAATGCATAGTC 60.736 47.826 0.00 0.00 32.53 2.59
2947 3097 3.429492 TGCCCAAGAAAATGCATAGTCA 58.571 40.909 0.00 0.00 0.00 3.41
2948 3098 3.193267 TGCCCAAGAAAATGCATAGTCAC 59.807 43.478 0.00 0.00 0.00 3.67
2949 3099 3.429410 GCCCAAGAAAATGCATAGTCACC 60.429 47.826 0.00 0.00 0.00 4.02
2950 3100 4.019174 CCCAAGAAAATGCATAGTCACCT 58.981 43.478 0.00 0.00 0.00 4.00
2951 3101 4.142315 CCCAAGAAAATGCATAGTCACCTG 60.142 45.833 0.00 0.27 0.00 4.00
2952 3102 4.418392 CAAGAAAATGCATAGTCACCTGC 58.582 43.478 0.00 0.00 38.87 4.85
2969 3119 3.382546 ACCTGCCAAAGATCAATATGCAC 59.617 43.478 0.00 0.00 0.00 4.57
2971 3121 4.142116 CCTGCCAAAGATCAATATGCACAA 60.142 41.667 0.00 0.00 0.00 3.33
2986 3136 3.382855 TGCACAACAAATGTTCAGCATC 58.617 40.909 14.57 0.00 41.46 3.91
2999 3149 2.653726 TCAGCATCACCAACTGTTTGT 58.346 42.857 0.00 0.00 33.12 2.83
3000 3150 3.814625 TCAGCATCACCAACTGTTTGTA 58.185 40.909 0.00 0.00 33.12 2.41
3002 3152 4.826733 TCAGCATCACCAACTGTTTGTAAT 59.173 37.500 0.00 0.00 33.12 1.89
3003 3153 4.919168 CAGCATCACCAACTGTTTGTAATG 59.081 41.667 4.03 4.03 0.00 1.90
3004 3154 3.674753 GCATCACCAACTGTTTGTAATGC 59.325 43.478 14.74 14.74 35.05 3.56
3008 3160 4.037446 TCACCAACTGTTTGTAATGCCTTC 59.963 41.667 0.00 0.00 0.00 3.46
3011 3163 5.830991 ACCAACTGTTTGTAATGCCTTCTTA 59.169 36.000 0.00 0.00 0.00 2.10
3014 3166 5.997385 ACTGTTTGTAATGCCTTCTTAACG 58.003 37.500 0.00 0.00 0.00 3.18
3037 3189 3.991999 GCTCTGCCAACATGCTCA 58.008 55.556 0.00 0.00 0.00 4.26
3039 3191 1.239296 GCTCTGCCAACATGCTCACA 61.239 55.000 0.00 0.00 0.00 3.58
3052 3204 6.389830 ACATGCTCACAAAATTTCAGTGTA 57.610 33.333 17.93 10.03 34.94 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.128109 TGGGGTAGGTATGATTCTTTGTTATCA 59.872 37.037 0.00 0.00 35.43 2.15
1 2 7.514721 TGGGGTAGGTATGATTCTTTGTTATC 58.485 38.462 0.00 0.00 0.00 1.75
2 3 7.460214 TGGGGTAGGTATGATTCTTTGTTAT 57.540 36.000 0.00 0.00 0.00 1.89
3 4 6.634039 GCTGGGGTAGGTATGATTCTTTGTTA 60.634 42.308 0.00 0.00 0.00 2.41
4 5 5.755849 CTGGGGTAGGTATGATTCTTTGTT 58.244 41.667 0.00 0.00 0.00 2.83
5 6 4.385310 GCTGGGGTAGGTATGATTCTTTGT 60.385 45.833 0.00 0.00 0.00 2.83
6 7 4.137543 GCTGGGGTAGGTATGATTCTTTG 58.862 47.826 0.00 0.00 0.00 2.77
7 8 3.785887 TGCTGGGGTAGGTATGATTCTTT 59.214 43.478 0.00 0.00 0.00 2.52
8 9 3.392616 CTGCTGGGGTAGGTATGATTCTT 59.607 47.826 0.00 0.00 0.00 2.52
9 10 2.975489 CTGCTGGGGTAGGTATGATTCT 59.025 50.000 0.00 0.00 0.00 2.40
10 11 2.706190 ACTGCTGGGGTAGGTATGATTC 59.294 50.000 0.00 0.00 0.00 2.52
11 12 2.776665 ACTGCTGGGGTAGGTATGATT 58.223 47.619 0.00 0.00 0.00 2.57
12 13 2.496679 ACTGCTGGGGTAGGTATGAT 57.503 50.000 0.00 0.00 0.00 2.45
13 14 2.674420 GTACTGCTGGGGTAGGTATGA 58.326 52.381 0.00 0.00 0.00 2.15
14 15 1.692519 GGTACTGCTGGGGTAGGTATG 59.307 57.143 0.00 0.00 0.00 2.39
15 16 1.414099 GGGTACTGCTGGGGTAGGTAT 60.414 57.143 0.00 0.00 0.00 2.73
16 17 0.031817 GGGTACTGCTGGGGTAGGTA 60.032 60.000 0.00 0.00 0.00 3.08
17 18 1.306739 GGGTACTGCTGGGGTAGGT 60.307 63.158 0.00 0.00 0.00 3.08
18 19 0.620700 AAGGGTACTGCTGGGGTAGG 60.621 60.000 0.00 0.00 0.00 3.18
19 20 0.541863 CAAGGGTACTGCTGGGGTAG 59.458 60.000 0.00 0.00 0.00 3.18
20 21 0.912487 CCAAGGGTACTGCTGGGGTA 60.912 60.000 0.00 0.00 0.00 3.69
21 22 2.231380 CCAAGGGTACTGCTGGGGT 61.231 63.158 0.00 0.00 0.00 4.95
22 23 2.677228 CCAAGGGTACTGCTGGGG 59.323 66.667 0.00 0.00 0.00 4.96
23 24 2.044946 GCCAAGGGTACTGCTGGG 60.045 66.667 8.93 0.00 0.00 4.45
24 25 2.044946 GGCCAAGGGTACTGCTGG 60.045 66.667 0.00 0.00 0.00 4.85
25 26 1.675641 GTGGCCAAGGGTACTGCTG 60.676 63.158 7.24 0.00 0.00 4.41
26 27 2.757077 GTGGCCAAGGGTACTGCT 59.243 61.111 7.24 0.00 0.00 4.24
27 28 2.361230 GGTGGCCAAGGGTACTGC 60.361 66.667 7.24 0.00 0.00 4.40
28 29 2.046314 CGGTGGCCAAGGGTACTG 60.046 66.667 7.24 0.00 0.00 2.74
29 30 1.205460 ATTCGGTGGCCAAGGGTACT 61.205 55.000 7.24 0.00 0.00 2.73
30 31 0.746923 GATTCGGTGGCCAAGGGTAC 60.747 60.000 7.24 0.00 0.00 3.34
31 32 1.202099 TGATTCGGTGGCCAAGGGTA 61.202 55.000 7.24 0.00 0.00 3.69
32 33 1.863155 ATGATTCGGTGGCCAAGGGT 61.863 55.000 7.24 0.00 0.00 4.34
33 34 0.684153 AATGATTCGGTGGCCAAGGG 60.684 55.000 7.24 0.00 0.00 3.95
34 35 1.949525 CTAATGATTCGGTGGCCAAGG 59.050 52.381 7.24 1.46 0.00 3.61
35 36 2.643551 ACTAATGATTCGGTGGCCAAG 58.356 47.619 7.24 4.75 0.00 3.61
36 37 2.799126 ACTAATGATTCGGTGGCCAA 57.201 45.000 7.24 0.00 0.00 4.52
37 38 4.431416 AATACTAATGATTCGGTGGCCA 57.569 40.909 0.00 0.00 0.00 5.36
38 39 6.870971 TTTAATACTAATGATTCGGTGGCC 57.129 37.500 0.00 0.00 0.00 5.36
39 40 9.180678 CAAATTTAATACTAATGATTCGGTGGC 57.819 33.333 0.00 0.00 0.00 5.01
62 63 9.126151 TGGTACATTTAATTGAGACTTGTCAAA 57.874 29.630 4.42 0.00 39.84 2.69
63 64 8.564574 GTGGTACATTTAATTGAGACTTGTCAA 58.435 33.333 4.42 0.00 44.52 3.18
64 65 7.095397 CGTGGTACATTTAATTGAGACTTGTCA 60.095 37.037 4.42 0.00 44.52 3.58
65 66 7.095355 ACGTGGTACATTTAATTGAGACTTGTC 60.095 37.037 4.42 0.00 44.52 3.18
66 67 6.708949 ACGTGGTACATTTAATTGAGACTTGT 59.291 34.615 4.42 0.00 44.52 3.16
67 68 7.129109 ACGTGGTACATTTAATTGAGACTTG 57.871 36.000 4.42 0.91 44.52 3.16
68 69 8.715088 GTTACGTGGTACATTTAATTGAGACTT 58.285 33.333 0.00 0.00 44.52 3.01
69 70 7.874016 TGTTACGTGGTACATTTAATTGAGACT 59.126 33.333 0.00 0.00 44.52 3.24
70 71 8.020861 TGTTACGTGGTACATTTAATTGAGAC 57.979 34.615 0.00 2.51 44.52 3.36
71 72 8.604640 TTGTTACGTGGTACATTTAATTGAGA 57.395 30.769 0.00 0.00 44.52 3.27
72 73 9.109533 GTTTGTTACGTGGTACATTTAATTGAG 57.890 33.333 0.00 0.00 44.52 3.02
73 74 8.618677 TGTTTGTTACGTGGTACATTTAATTGA 58.381 29.630 0.00 0.00 44.52 2.57
74 75 8.783999 TGTTTGTTACGTGGTACATTTAATTG 57.216 30.769 0.00 0.00 44.52 2.32
75 76 8.838365 TCTGTTTGTTACGTGGTACATTTAATT 58.162 29.630 0.00 0.00 44.52 1.40
76 77 8.380743 TCTGTTTGTTACGTGGTACATTTAAT 57.619 30.769 0.00 0.00 44.52 1.40
77 78 7.783090 TCTGTTTGTTACGTGGTACATTTAA 57.217 32.000 0.00 0.00 44.52 1.52
78 79 7.783090 TTCTGTTTGTTACGTGGTACATTTA 57.217 32.000 0.00 0.00 44.52 1.40
79 80 6.680874 TTCTGTTTGTTACGTGGTACATTT 57.319 33.333 0.00 0.00 44.52 2.32
80 81 6.680874 TTTCTGTTTGTTACGTGGTACATT 57.319 33.333 0.00 0.00 44.52 2.71
81 82 6.680874 TTTTCTGTTTGTTACGTGGTACAT 57.319 33.333 0.00 0.00 44.52 2.29
82 83 6.238429 GGATTTTCTGTTTGTTACGTGGTACA 60.238 38.462 0.00 0.00 0.00 2.90
83 84 6.017687 AGGATTTTCTGTTTGTTACGTGGTAC 60.018 38.462 0.00 0.00 0.00 3.34
84 85 6.056884 AGGATTTTCTGTTTGTTACGTGGTA 58.943 36.000 0.00 0.00 0.00 3.25
85 86 4.885325 AGGATTTTCTGTTTGTTACGTGGT 59.115 37.500 0.00 0.00 0.00 4.16
86 87 5.432885 AGGATTTTCTGTTTGTTACGTGG 57.567 39.130 0.00 0.00 0.00 4.94
87 88 8.844441 TTTTAGGATTTTCTGTTTGTTACGTG 57.156 30.769 0.00 0.00 0.00 4.49
116 117 9.599866 TGAGATCAATTATTGAGTTTCGTACAT 57.400 29.630 13.29 0.00 43.98 2.29
117 118 8.869897 GTGAGATCAATTATTGAGTTTCGTACA 58.130 33.333 13.29 7.00 43.98 2.90
118 119 8.050750 CGTGAGATCAATTATTGAGTTTCGTAC 58.949 37.037 13.29 9.17 43.98 3.67
119 120 7.971722 TCGTGAGATCAATTATTGAGTTTCGTA 59.028 33.333 13.29 0.00 43.98 3.43
120 121 6.811665 TCGTGAGATCAATTATTGAGTTTCGT 59.188 34.615 13.29 0.00 43.98 3.85
121 122 7.221828 TCGTGAGATCAATTATTGAGTTTCG 57.778 36.000 13.29 12.66 43.98 3.46
127 128 9.927668 TGCTATATTCGTGAGATCAATTATTGA 57.072 29.630 10.23 10.23 45.01 2.57
129 130 8.877779 GCTGCTATATTCGTGAGATCAATTATT 58.122 33.333 0.00 0.00 41.60 1.40
130 131 7.221645 CGCTGCTATATTCGTGAGATCAATTAT 59.778 37.037 0.00 0.00 41.60 1.28
131 132 6.528072 CGCTGCTATATTCGTGAGATCAATTA 59.472 38.462 0.00 0.00 41.60 1.40
132 133 5.347093 CGCTGCTATATTCGTGAGATCAATT 59.653 40.000 0.00 0.00 41.60 2.32
133 134 4.861462 CGCTGCTATATTCGTGAGATCAAT 59.139 41.667 0.00 0.00 41.60 2.57
134 135 4.023193 TCGCTGCTATATTCGTGAGATCAA 60.023 41.667 0.00 0.00 41.60 2.57
135 136 3.502211 TCGCTGCTATATTCGTGAGATCA 59.498 43.478 0.00 0.00 41.60 2.92
136 137 3.849145 GTCGCTGCTATATTCGTGAGATC 59.151 47.826 0.00 0.00 41.60 2.75
137 138 3.504134 AGTCGCTGCTATATTCGTGAGAT 59.496 43.478 0.00 0.00 41.60 2.75
138 139 2.879026 AGTCGCTGCTATATTCGTGAGA 59.121 45.455 0.00 0.00 39.20 3.27
139 140 2.976509 CAGTCGCTGCTATATTCGTGAG 59.023 50.000 0.00 0.00 0.00 3.51
140 141 2.616842 TCAGTCGCTGCTATATTCGTGA 59.383 45.455 0.00 0.00 0.00 4.35
141 142 2.976509 CTCAGTCGCTGCTATATTCGTG 59.023 50.000 0.00 0.00 0.00 4.35
142 143 2.030717 CCTCAGTCGCTGCTATATTCGT 60.031 50.000 0.00 0.00 0.00 3.85
143 144 2.590073 CCTCAGTCGCTGCTATATTCG 58.410 52.381 0.00 0.00 0.00 3.34
144 145 2.288457 TGCCTCAGTCGCTGCTATATTC 60.288 50.000 0.00 0.00 0.00 1.75
145 146 1.688735 TGCCTCAGTCGCTGCTATATT 59.311 47.619 0.00 0.00 0.00 1.28
146 147 1.332195 TGCCTCAGTCGCTGCTATAT 58.668 50.000 0.00 0.00 0.00 0.86
147 148 1.332195 ATGCCTCAGTCGCTGCTATA 58.668 50.000 0.00 0.00 0.00 1.31
148 149 1.332195 TATGCCTCAGTCGCTGCTAT 58.668 50.000 0.00 0.00 0.00 2.97
149 150 1.111277 TTATGCCTCAGTCGCTGCTA 58.889 50.000 0.00 0.00 0.00 3.49
150 151 0.460987 GTTATGCCTCAGTCGCTGCT 60.461 55.000 0.00 0.00 0.00 4.24
151 152 0.740868 TGTTATGCCTCAGTCGCTGC 60.741 55.000 2.45 0.00 0.00 5.25
152 153 1.725641 TTGTTATGCCTCAGTCGCTG 58.274 50.000 1.02 1.02 0.00 5.18
153 154 2.289694 ACTTTGTTATGCCTCAGTCGCT 60.290 45.455 0.00 0.00 0.00 4.93
154 155 2.076863 ACTTTGTTATGCCTCAGTCGC 58.923 47.619 0.00 0.00 0.00 5.19
155 156 3.369147 CAGACTTTGTTATGCCTCAGTCG 59.631 47.826 0.00 0.00 0.00 4.18
156 157 4.569943 TCAGACTTTGTTATGCCTCAGTC 58.430 43.478 0.00 0.00 0.00 3.51
157 158 4.040952 ACTCAGACTTTGTTATGCCTCAGT 59.959 41.667 0.00 0.00 0.00 3.41
158 159 4.573900 ACTCAGACTTTGTTATGCCTCAG 58.426 43.478 0.00 0.00 0.00 3.35
159 160 4.563580 GGACTCAGACTTTGTTATGCCTCA 60.564 45.833 0.00 0.00 0.00 3.86
160 161 3.935828 GGACTCAGACTTTGTTATGCCTC 59.064 47.826 0.00 0.00 0.00 4.70
161 162 3.327757 TGGACTCAGACTTTGTTATGCCT 59.672 43.478 0.00 0.00 0.00 4.75
162 163 3.437049 GTGGACTCAGACTTTGTTATGCC 59.563 47.826 0.00 0.00 0.00 4.40
163 164 4.153117 CAGTGGACTCAGACTTTGTTATGC 59.847 45.833 0.00 0.00 0.00 3.14
164 165 5.541845 TCAGTGGACTCAGACTTTGTTATG 58.458 41.667 0.00 0.00 0.00 1.90
165 166 5.540337 TCTCAGTGGACTCAGACTTTGTTAT 59.460 40.000 0.00 0.00 0.00 1.89
166 167 4.893524 TCTCAGTGGACTCAGACTTTGTTA 59.106 41.667 0.00 0.00 0.00 2.41
167 168 3.706594 TCTCAGTGGACTCAGACTTTGTT 59.293 43.478 0.00 0.00 0.00 2.83
168 169 3.068873 GTCTCAGTGGACTCAGACTTTGT 59.931 47.826 3.74 0.00 33.76 2.83
169 170 3.320541 AGTCTCAGTGGACTCAGACTTTG 59.679 47.826 7.47 0.00 42.43 2.77
170 171 3.571590 AGTCTCAGTGGACTCAGACTTT 58.428 45.455 7.47 0.00 42.43 2.66
171 172 3.237268 AGTCTCAGTGGACTCAGACTT 57.763 47.619 7.47 0.00 42.43 3.01
172 173 2.890311 CAAGTCTCAGTGGACTCAGACT 59.110 50.000 7.47 7.47 46.13 3.24
173 174 2.887783 TCAAGTCTCAGTGGACTCAGAC 59.112 50.000 12.78 2.78 44.67 3.51
174 175 2.887783 GTCAAGTCTCAGTGGACTCAGA 59.112 50.000 12.78 11.34 44.67 3.27
175 176 2.625314 TGTCAAGTCTCAGTGGACTCAG 59.375 50.000 12.78 9.75 44.67 3.35
176 177 2.666317 TGTCAAGTCTCAGTGGACTCA 58.334 47.619 12.78 6.27 44.67 3.41
177 178 3.319405 TCTTGTCAAGTCTCAGTGGACTC 59.681 47.826 12.30 4.27 44.67 3.36
179 180 3.068873 AGTCTTGTCAAGTCTCAGTGGAC 59.931 47.826 12.30 4.17 36.56 4.02
180 181 3.068732 CAGTCTTGTCAAGTCTCAGTGGA 59.931 47.826 12.30 0.00 0.00 4.02
181 182 3.068732 TCAGTCTTGTCAAGTCTCAGTGG 59.931 47.826 12.30 1.01 0.00 4.00
182 183 4.313277 TCAGTCTTGTCAAGTCTCAGTG 57.687 45.455 12.30 6.50 0.00 3.66
183 184 5.163364 ACAATCAGTCTTGTCAAGTCTCAGT 60.163 40.000 12.30 0.00 34.26 3.41
184 185 5.177142 CACAATCAGTCTTGTCAAGTCTCAG 59.823 44.000 12.30 2.31 37.25 3.35
185 186 5.052481 CACAATCAGTCTTGTCAAGTCTCA 58.948 41.667 12.30 0.00 37.25 3.27
186 187 5.292765 TCACAATCAGTCTTGTCAAGTCTC 58.707 41.667 12.30 5.09 37.25 3.36
187 188 5.282055 TCACAATCAGTCTTGTCAAGTCT 57.718 39.130 12.30 9.32 37.25 3.24
188 189 6.551385 AATCACAATCAGTCTTGTCAAGTC 57.449 37.500 12.30 7.08 37.25 3.01
189 190 6.319658 ACAAATCACAATCAGTCTTGTCAAGT 59.680 34.615 12.30 0.00 37.25 3.16
190 191 6.732154 ACAAATCACAATCAGTCTTGTCAAG 58.268 36.000 6.21 6.21 37.25 3.02
191 192 6.698008 ACAAATCACAATCAGTCTTGTCAA 57.302 33.333 0.00 0.00 37.25 3.18
192 193 6.073819 CGTACAAATCACAATCAGTCTTGTCA 60.074 38.462 0.00 0.00 37.25 3.58
193 194 6.073765 ACGTACAAATCACAATCAGTCTTGTC 60.074 38.462 0.00 0.00 37.25 3.18
194 195 5.758296 ACGTACAAATCACAATCAGTCTTGT 59.242 36.000 0.00 0.00 39.91 3.16
195 196 6.228273 ACGTACAAATCACAATCAGTCTTG 57.772 37.500 0.00 0.00 0.00 3.02
196 197 7.375834 TCTACGTACAAATCACAATCAGTCTT 58.624 34.615 0.00 0.00 0.00 3.01
197 198 6.920817 TCTACGTACAAATCACAATCAGTCT 58.079 36.000 0.00 0.00 0.00 3.24
198 199 7.613146 CATCTACGTACAAATCACAATCAGTC 58.387 38.462 0.00 0.00 0.00 3.51
199 200 6.036083 GCATCTACGTACAAATCACAATCAGT 59.964 38.462 0.00 0.00 0.00 3.41
200 201 6.414079 GCATCTACGTACAAATCACAATCAG 58.586 40.000 0.00 0.00 0.00 2.90
201 202 5.293324 GGCATCTACGTACAAATCACAATCA 59.707 40.000 0.00 0.00 0.00 2.57
202 203 5.293324 TGGCATCTACGTACAAATCACAATC 59.707 40.000 0.00 0.00 0.00 2.67
203 204 5.182487 TGGCATCTACGTACAAATCACAAT 58.818 37.500 0.00 0.00 0.00 2.71
204 205 4.570930 TGGCATCTACGTACAAATCACAA 58.429 39.130 0.00 0.00 0.00 3.33
205 206 4.180817 CTGGCATCTACGTACAAATCACA 58.819 43.478 0.00 0.00 0.00 3.58
206 207 4.032900 CACTGGCATCTACGTACAAATCAC 59.967 45.833 0.00 0.00 0.00 3.06
207 208 4.081917 TCACTGGCATCTACGTACAAATCA 60.082 41.667 0.00 0.00 0.00 2.57
208 209 4.267928 GTCACTGGCATCTACGTACAAATC 59.732 45.833 0.00 0.00 0.00 2.17
209 210 4.181578 GTCACTGGCATCTACGTACAAAT 58.818 43.478 0.00 0.00 0.00 2.32
210 211 3.006003 TGTCACTGGCATCTACGTACAAA 59.994 43.478 0.00 0.00 0.00 2.83
211 212 2.559231 TGTCACTGGCATCTACGTACAA 59.441 45.455 0.00 0.00 0.00 2.41
212 213 2.094906 GTGTCACTGGCATCTACGTACA 60.095 50.000 0.00 0.00 0.00 2.90
213 214 2.163815 AGTGTCACTGGCATCTACGTAC 59.836 50.000 4.21 0.00 0.00 3.67
214 215 2.163613 CAGTGTCACTGGCATCTACGTA 59.836 50.000 23.09 0.00 42.35 3.57
215 216 1.067565 CAGTGTCACTGGCATCTACGT 60.068 52.381 23.09 0.00 42.35 3.57
216 217 1.633561 CAGTGTCACTGGCATCTACG 58.366 55.000 23.09 0.00 42.35 3.51
238 239 0.460311 CCACGCTTCTCTATTCCCGT 59.540 55.000 0.00 0.00 0.00 5.28
241 242 2.541556 GTCACCACGCTTCTCTATTCC 58.458 52.381 0.00 0.00 0.00 3.01
258 259 2.058798 GAGATGAGAACAAACGCGTCA 58.941 47.619 14.44 4.23 0.00 4.35
348 349 0.179097 TGCCTATGTTATGCGTCGCA 60.179 50.000 24.05 24.05 44.86 5.10
421 422 2.673200 GGCAGGCAGGATCAGGTCA 61.673 63.158 0.00 0.00 0.00 4.02
427 428 1.522580 GAAGTCGGCAGGCAGGATC 60.523 63.158 0.00 0.00 0.00 3.36
443 452 1.309950 TTTGAATTCCGTGGTGCGAA 58.690 45.000 2.27 0.00 44.77 4.70
531 548 4.060038 GGCTTCGGACCGTTCGGA 62.060 66.667 18.28 0.00 0.00 4.55
564 581 2.165301 GTACGTGGATCCACTGCGC 61.165 63.158 35.84 21.69 44.16 6.09
583 600 2.767445 CGATCCGCTGGTGGACGTA 61.767 63.158 4.93 0.00 41.85 3.57
624 645 1.486726 ACGAGCTTATTTGGAGGGGAG 59.513 52.381 0.00 0.00 0.00 4.30
625 646 1.485066 GACGAGCTTATTTGGAGGGGA 59.515 52.381 0.00 0.00 0.00 4.81
647 668 0.390340 GATTGTGAGAGCGCTGGACA 60.390 55.000 18.48 11.99 0.00 4.02
685 724 2.921538 CTTCCGAGCGCTAGTGACGG 62.922 65.000 24.10 24.10 44.09 4.79
791 848 1.804396 CGATGGGCACAAAACCAGCA 61.804 55.000 0.00 0.00 43.08 4.41
900 987 2.202932 ATCGGATCAGTGCGGTGC 60.203 61.111 0.00 0.00 39.87 5.01
902 989 1.739338 GAGGATCGGATCAGTGCGGT 61.739 60.000 18.99 0.00 39.87 5.68
903 990 1.006805 GAGGATCGGATCAGTGCGG 60.007 63.158 18.99 0.00 39.87 5.69
904 991 1.006805 GGAGGATCGGATCAGTGCG 60.007 63.158 18.99 0.00 40.90 5.34
953 1051 2.008697 GCACGCACGCACGAAATTT 61.009 52.632 4.54 0.00 36.70 1.82
1041 1139 1.218316 CTTGCCGGTGAGGTAGGAC 59.782 63.158 1.90 0.00 43.70 3.85
1173 1279 3.173965 TCTGTAAGGCCTTAAGCAGAGT 58.826 45.455 29.06 7.28 46.50 3.24
1180 1286 3.769844 CCACTCTCTCTGTAAGGCCTTAA 59.230 47.826 26.78 15.36 0.00 1.85
1181 1287 3.245658 ACCACTCTCTCTGTAAGGCCTTA 60.246 47.826 21.68 21.68 0.00 2.69
1183 1289 1.077993 ACCACTCTCTCTGTAAGGCCT 59.922 52.381 0.00 0.00 0.00 5.19
1185 1291 4.442192 CCATAACCACTCTCTCTGTAAGGC 60.442 50.000 0.00 0.00 0.00 4.35
1189 1295 4.342378 GCATCCATAACCACTCTCTCTGTA 59.658 45.833 0.00 0.00 0.00 2.74
1203 1309 3.072038 CCTCAGTCATCCTGCATCCATAA 59.928 47.826 0.00 0.00 41.25 1.90
1205 1311 1.420514 CCTCAGTCATCCTGCATCCAT 59.579 52.381 0.00 0.00 41.25 3.41
1206 1312 0.835276 CCTCAGTCATCCTGCATCCA 59.165 55.000 0.00 0.00 41.25 3.41
1207 1313 1.070445 CTCCTCAGTCATCCTGCATCC 59.930 57.143 0.00 0.00 41.25 3.51
1208 1314 1.070445 CCTCCTCAGTCATCCTGCATC 59.930 57.143 0.00 0.00 41.25 3.91
1221 1327 3.744719 CCGTTCGTCGCCTCCTCA 61.745 66.667 0.00 0.00 38.35 3.86
1374 1486 1.468985 CGGAGAGGAAGAGAAGAGCA 58.531 55.000 0.00 0.00 0.00 4.26
1387 1499 2.110967 TTAGACGACGGGCGGAGAG 61.111 63.158 8.66 0.00 46.49 3.20
1425 1537 1.068753 CGCCAGCCTGAAGATCGAT 59.931 57.895 0.00 0.00 0.00 3.59
1432 1544 2.357034 GAACGTCGCCAGCCTGAA 60.357 61.111 0.00 0.00 0.00 3.02
1626 1738 7.464358 ACTGAATAAGAATGAATTACGTGTGC 58.536 34.615 0.00 0.00 0.00 4.57
1652 1764 6.928520 ACATCAGAAAATTTTCAGCCTAAGG 58.071 36.000 28.00 11.72 39.61 2.69
1659 1772 7.170320 CCCACAAGAACATCAGAAAATTTTCAG 59.830 37.037 28.00 21.73 39.61 3.02
1932 2048 1.650528 CAGGTTCTCCTTGTCCTCCT 58.349 55.000 0.00 0.00 43.07 3.69
1933 2049 0.615850 CCAGGTTCTCCTTGTCCTCC 59.384 60.000 0.00 0.00 43.07 4.30
2076 2192 1.203428 TCATCCCTCTCCAAGTTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
2080 2196 0.539051 CGCTCATCCCTCTCCAAGTT 59.461 55.000 0.00 0.00 0.00 2.66
2081 2197 1.965754 GCGCTCATCCCTCTCCAAGT 61.966 60.000 0.00 0.00 0.00 3.16
2082 2198 1.227497 GCGCTCATCCCTCTCCAAG 60.227 63.158 0.00 0.00 0.00 3.61
2084 2200 3.157252 GGCGCTCATCCCTCTCCA 61.157 66.667 7.64 0.00 0.00 3.86
2115 2232 7.897575 GTACAGTACAGTACAGTACAGTAGT 57.102 40.000 28.63 19.42 45.42 2.73
2136 2253 4.154737 TGACACCGACATACAGTACAGTAC 59.845 45.833 2.05 2.05 0.00 2.73
2137 2254 4.325972 TGACACCGACATACAGTACAGTA 58.674 43.478 0.13 0.13 0.00 2.74
2138 2255 3.151554 TGACACCGACATACAGTACAGT 58.848 45.455 0.00 0.00 0.00 3.55
2139 2256 3.759418 CTGACACCGACATACAGTACAG 58.241 50.000 0.00 0.00 0.00 2.74
2140 2257 2.094906 GCTGACACCGACATACAGTACA 60.095 50.000 0.00 0.00 0.00 2.90
2141 2258 2.527100 GCTGACACCGACATACAGTAC 58.473 52.381 0.00 0.00 0.00 2.73
2142 2259 1.131693 CGCTGACACCGACATACAGTA 59.868 52.381 0.00 0.00 0.00 2.74
2143 2260 0.109272 CGCTGACACCGACATACAGT 60.109 55.000 0.00 0.00 0.00 3.55
2144 2261 0.109272 ACGCTGACACCGACATACAG 60.109 55.000 0.00 0.00 0.00 2.74
2145 2262 0.388006 CACGCTGACACCGACATACA 60.388 55.000 0.00 0.00 0.00 2.29
2172 2289 4.377841 CCACACGCTTTTCTTCTTCAGATC 60.378 45.833 0.00 0.00 0.00 2.75
2186 2303 4.235762 ACCTCGCACCACACGCTT 62.236 61.111 0.00 0.00 0.00 4.68
2188 2305 4.961511 TGACCTCGCACCACACGC 62.962 66.667 0.00 0.00 0.00 5.34
2189 2306 2.734723 CTGACCTCGCACCACACG 60.735 66.667 0.00 0.00 0.00 4.49
2190 2307 1.956170 CACTGACCTCGCACCACAC 60.956 63.158 0.00 0.00 0.00 3.82
2191 2308 2.421314 CACTGACCTCGCACCACA 59.579 61.111 0.00 0.00 0.00 4.17
2193 2310 1.978455 AAACCACTGACCTCGCACCA 61.978 55.000 0.00 0.00 0.00 4.17
2194 2311 1.227853 AAACCACTGACCTCGCACC 60.228 57.895 0.00 0.00 0.00 5.01
2235 2358 1.468127 GAGGAAGAAAAGAGCTGCTGC 59.532 52.381 7.01 7.62 40.05 5.25
2236 2359 3.002102 GAGAGGAAGAAAAGAGCTGCTG 58.998 50.000 7.01 0.00 0.00 4.41
2238 2361 3.261580 GAGAGAGGAAGAAAAGAGCTGC 58.738 50.000 0.00 0.00 0.00 5.25
2239 2362 3.056891 ACGAGAGAGGAAGAAAAGAGCTG 60.057 47.826 0.00 0.00 0.00 4.24
2240 2363 3.056891 CACGAGAGAGGAAGAAAAGAGCT 60.057 47.826 0.00 0.00 0.00 4.09
2241 2364 3.249917 CACGAGAGAGGAAGAAAAGAGC 58.750 50.000 0.00 0.00 0.00 4.09
2242 2365 4.481463 GACACGAGAGAGGAAGAAAAGAG 58.519 47.826 0.00 0.00 0.00 2.85
2243 2366 3.058155 CGACACGAGAGAGGAAGAAAAGA 60.058 47.826 0.00 0.00 0.00 2.52
2244 2367 3.238441 CGACACGAGAGAGGAAGAAAAG 58.762 50.000 0.00 0.00 0.00 2.27
2282 2405 1.084370 GCTCAAGGAACGTGGGATCG 61.084 60.000 0.00 0.00 42.08 3.69
2297 2420 1.134521 ACACGGTTCAGAAGTTGCTCA 60.135 47.619 0.00 0.00 0.00 4.26
2305 2428 3.340034 ACAGTTTGAACACGGTTCAGAA 58.660 40.909 15.76 11.78 0.00 3.02
2313 2442 1.083657 CGGCGACAGTTTGAACACG 60.084 57.895 0.00 0.00 0.00 4.49
2327 2456 1.557443 GGAACACAGTTCAGACGGCG 61.557 60.000 4.80 4.80 0.00 6.46
2328 2457 0.249911 AGGAACACAGTTCAGACGGC 60.250 55.000 11.51 0.00 0.00 5.68
2331 2460 4.021016 AGACCATAGGAACACAGTTCAGAC 60.021 45.833 11.51 0.00 0.00 3.51
2365 2494 5.867174 TGTTCCGTGTTCATTCATGTACTAG 59.133 40.000 0.00 0.00 0.00 2.57
2366 2495 5.785243 TGTTCCGTGTTCATTCATGTACTA 58.215 37.500 0.00 0.00 0.00 1.82
2367 2496 4.637276 TGTTCCGTGTTCATTCATGTACT 58.363 39.130 0.00 0.00 0.00 2.73
2391 2520 1.815003 GCATCCTGGGTTCAGAAGTTG 59.185 52.381 0.00 0.00 43.49 3.16
2441 2570 1.200483 GATCGCATGACGTACTGTGG 58.800 55.000 0.00 0.00 44.19 4.17
2444 2573 3.334272 TGTAGATCGCATGACGTACTG 57.666 47.619 0.00 0.00 44.19 2.74
2447 2577 3.813166 TCAGATGTAGATCGCATGACGTA 59.187 43.478 9.91 0.00 44.19 3.57
2532 2669 4.450976 TGGAAGCACATAATTCGCAGTAT 58.549 39.130 0.00 0.00 0.00 2.12
2594 2735 0.834687 TTCCCTTGCCCGTGTAGTCT 60.835 55.000 0.00 0.00 0.00 3.24
2608 2757 2.158475 TCCTGTGTGCTGAATTTTCCCT 60.158 45.455 0.00 0.00 0.00 4.20
2612 2761 3.228188 TCCTCCTGTGTGCTGAATTTT 57.772 42.857 0.00 0.00 0.00 1.82
2620 2769 0.610174 TCTGTGATCCTCCTGTGTGC 59.390 55.000 0.00 0.00 0.00 4.57
2624 2773 2.301296 CTGTGTTCTGTGATCCTCCTGT 59.699 50.000 0.00 0.00 0.00 4.00
2625 2774 2.354503 CCTGTGTTCTGTGATCCTCCTG 60.355 54.545 0.00 0.00 0.00 3.86
2626 2775 1.905215 CCTGTGTTCTGTGATCCTCCT 59.095 52.381 0.00 0.00 0.00 3.69
2627 2776 1.625818 ACCTGTGTTCTGTGATCCTCC 59.374 52.381 0.00 0.00 0.00 4.30
2628 2777 3.330267 GAACCTGTGTTCTGTGATCCTC 58.670 50.000 0.00 0.00 46.03 3.71
2629 2778 3.409026 GAACCTGTGTTCTGTGATCCT 57.591 47.619 0.00 0.00 46.03 3.24
2630 2779 4.650740 CACGAACCTGTGTTCTGTGATCC 61.651 52.174 17.38 0.00 46.67 3.36
2655 2804 6.304882 GGTTTTTATAGAGAAACTGTCGTGC 58.695 40.000 3.84 0.00 36.32 5.34
2677 2827 2.108601 TGAGGAAATTTTACACCGGGGT 59.891 45.455 16.91 16.91 0.00 4.95
2695 2845 5.385617 CGTGAAAAGTTAGGCTTTGATGAG 58.614 41.667 0.00 0.00 45.91 2.90
2709 2859 3.486875 CCGAAACTGAAAGCGTGAAAAGT 60.487 43.478 0.00 0.00 37.60 2.66
2715 2865 0.657368 GCACCGAAACTGAAAGCGTG 60.657 55.000 0.00 0.00 37.60 5.34
2739 2889 5.242615 AGAAAAGAAGAAGGCTTTTAGGCAG 59.757 40.000 0.00 0.00 43.45 4.85
2875 3025 2.764572 TCTTTACCCTGGCTACTAGTGC 59.235 50.000 5.39 7.18 0.00 4.40
2876 3026 4.710375 TCTTCTTTACCCTGGCTACTAGTG 59.290 45.833 5.39 0.00 0.00 2.74
2877 3027 4.944177 TCTTCTTTACCCTGGCTACTAGT 58.056 43.478 0.00 0.00 0.00 2.57
2878 3028 4.202172 GCTCTTCTTTACCCTGGCTACTAG 60.202 50.000 0.00 0.00 0.00 2.57
2879 3029 3.705072 GCTCTTCTTTACCCTGGCTACTA 59.295 47.826 0.00 0.00 0.00 1.82
2880 3030 2.502130 GCTCTTCTTTACCCTGGCTACT 59.498 50.000 0.00 0.00 0.00 2.57
2881 3031 2.738964 CGCTCTTCTTTACCCTGGCTAC 60.739 54.545 0.00 0.00 0.00 3.58
2882 3032 1.480954 CGCTCTTCTTTACCCTGGCTA 59.519 52.381 0.00 0.00 0.00 3.93
2883 3033 0.250513 CGCTCTTCTTTACCCTGGCT 59.749 55.000 0.00 0.00 0.00 4.75
2884 3034 1.369839 GCGCTCTTCTTTACCCTGGC 61.370 60.000 0.00 0.00 0.00 4.85
2885 3035 0.744771 GGCGCTCTTCTTTACCCTGG 60.745 60.000 7.64 0.00 0.00 4.45
2886 3036 0.036388 TGGCGCTCTTCTTTACCCTG 60.036 55.000 7.64 0.00 0.00 4.45
2887 3037 0.690762 TTGGCGCTCTTCTTTACCCT 59.309 50.000 7.64 0.00 0.00 4.34
2888 3038 1.530323 TTTGGCGCTCTTCTTTACCC 58.470 50.000 7.64 0.00 0.00 3.69
2918 3068 1.114722 TTTTCTTGGGCAGCAGGTGG 61.115 55.000 0.86 0.00 0.00 4.61
2919 3069 0.971386 ATTTTCTTGGGCAGCAGGTG 59.029 50.000 0.00 0.00 0.00 4.00
2945 3095 3.633525 GCATATTGATCTTTGGCAGGTGA 59.366 43.478 0.00 0.00 0.00 4.02
2946 3096 3.382227 TGCATATTGATCTTTGGCAGGTG 59.618 43.478 0.00 0.00 0.00 4.00
2947 3097 3.382546 GTGCATATTGATCTTTGGCAGGT 59.617 43.478 0.00 0.00 0.00 4.00
2948 3098 3.382227 TGTGCATATTGATCTTTGGCAGG 59.618 43.478 0.00 0.00 0.00 4.85
2949 3099 4.642445 TGTGCATATTGATCTTTGGCAG 57.358 40.909 0.00 0.00 0.00 4.85
2950 3100 4.220163 TGTTGTGCATATTGATCTTTGGCA 59.780 37.500 0.00 0.00 0.00 4.92
2951 3101 4.746729 TGTTGTGCATATTGATCTTTGGC 58.253 39.130 0.00 0.00 0.00 4.52
2952 3102 7.332430 ACATTTGTTGTGCATATTGATCTTTGG 59.668 33.333 0.00 0.00 37.11 3.28
2969 3119 3.979948 TGGTGATGCTGAACATTTGTTG 58.020 40.909 0.00 0.00 39.84 3.33
2971 3121 3.638160 AGTTGGTGATGCTGAACATTTGT 59.362 39.130 0.00 0.00 39.84 2.83
2986 3136 4.037923 AGAAGGCATTACAAACAGTTGGTG 59.962 41.667 3.26 0.00 39.22 4.17
2999 3149 4.521256 AGCCAAAACGTTAAGAAGGCATTA 59.479 37.500 22.62 0.00 42.90 1.90
3000 3150 3.320826 AGCCAAAACGTTAAGAAGGCATT 59.679 39.130 22.62 8.06 42.90 3.56
3002 3152 2.292292 GAGCCAAAACGTTAAGAAGGCA 59.708 45.455 22.62 0.00 42.90 4.75
3003 3153 2.552743 AGAGCCAAAACGTTAAGAAGGC 59.447 45.455 16.68 16.68 40.85 4.35
3004 3154 3.609409 GCAGAGCCAAAACGTTAAGAAGG 60.609 47.826 0.00 0.50 0.00 3.46
3032 3184 5.826601 TGTACACTGAAATTTTGTGAGCA 57.173 34.783 23.14 18.47 35.83 4.26
3036 3188 9.015577 ACGTATTTTGTACACTGAAATTTTGTG 57.984 29.630 17.87 17.87 37.67 3.33
3037 3189 9.015577 CACGTATTTTGTACACTGAAATTTTGT 57.984 29.630 8.82 0.00 0.00 2.83
3039 3191 7.168469 GCCACGTATTTTGTACACTGAAATTTT 59.832 33.333 8.82 0.00 0.00 1.82
3052 3204 3.078097 TGTATGCAGCCACGTATTTTGT 58.922 40.909 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.