>input_sequence_61490
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---------------------------------------------------------ATGGACGCGCCCTTCTTCCACGA
GCTCCGGCGGCAGGCCTCGTCCTACCTCACCGGCAAGATCCGCTCCGCGCGGCTCGCGCTCACCGACGTCACCCCGACGC
AGCTGTACGTGACCCCT--------CCCCGATCGACAATCCATTCCTGTTCTCCGTTTCATTTTCATGGTGTACCGTTAC
TCTGCTTAAGGCCTTACAGAGAGAGTGGTTATGGATGCAGGATGACTGAGGAGGCGACGAACGGCGACGCGTCGCCGCCG
AACGCCAAGACGATGAGCCTCATCGCGCGGGAGGCGTTCGAGATCGACGAGTACCTCAGGATCTCCGACATCCTCCACAC
CAGGTGACCTTCTCCCTCTCG------TTCACCGCACCGGATCGATGCTCTTCTCTTCCTCTCCGCCCGTCGTCTAACTC
GGGGCAGCATCGATGGATCGATCTTCAGGCTGGCGACGTTCGACAGGAGGCAGTGGCGGGAGCCGTACAAGGCGCTGCTG
CTGCTGGAGCACCTCCTGACGCACGGCCCCCGCAGCGTGGCCCTGGAGTTCCAGAAGGACCGGGCCGTCATCCAGCAGAT
GGCCACCTTCCAGCACATCGACGAGAGAGGGTTCGATCTCGATCTTCTCCTCTTCCTGCACACGTAATTCATTCTTATTC
AGTCC-TTAGGCTGAAAATTTTCTGATGTTCTTGTGGGATTTGCGGTGCAGTTTCAACTGGGGCCTGACGGTGAAGGGCA
AGTCGGAGCGGGTGCTAAAGCTGCTGGAGCGGGGGCCGTTCCTGGAGGAGGAGCGCGAGCGGGCGCGCAAGGTGGCGCGC
GAGATCAAGGGCTTCGGCAGCTTCAACCTCAGCAGCA---GCGGCGGCTCGCGCGCGGCGCCGCCGGTGTACTCGCGCAG
CCACTCGCGGTACGAGGACCGGCCGTGGAAGGAGGAGGACGGCGAGGAGGAGGACAAGGAGAACCTGGTGTCCCGGCCCG
ACCCGAGGAGCGTGCGCGAGGAGGTGGCGGAGGAGCTGCACCACCGCCACCCGTTCCACGGCTTCGGGCAGCAGCGGCAG
CCGGAGGCGATGCTGCTGCTCAGCCAGTGA--------------------------------------------------
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>chr3B_1_TraesCS3B01G391600
TGATAACAAAGAATCATACCTACCCCAGCAGTACCCTTGGCCACCGAATCATTAGTATTAAATTTGACAAGTCTCAATTA
AATGTACCACGTAACAAACAGAAAATCCTAAAATAAATGTACGAAACTCAATAATTGATCTCACGAATATAGCAGCGACT
GAGGCATAACAAAGTCTGAGTCCACTGAGACTTGACAAGACTGATTGTGATTTGTACGTAGATGCCAGTGACACTGCTAC
GGGAATAGAGAAGCGTGGTGACGCGTTTGTTCTCATCTCTTCCAAAACGCATCCGTGGCGTCCCCGCTGGTTGCCGCGCT
ACCACGCGAGTGGTACACCATGTCACGGTGCGACGCATAACATAGGCACCGGGGCCGCCGGCGCACGGCCAACGCGCCAC
GAGTACCCGGGCCGCATCACGTGACCTGAT--------CCTGCCTGCCGACTTCGCACCACGGAATTCAAAATTCAAGCG
CGCTGCCGTCCCGTCCAACCGGTTGACGTTCCGCCACT----CGCCCACTCCA----CTCGCTGCCCTCCGAACGGTCCG
AAGCCACTAGAAACAAGAAGGCGCAGTGGATCCACGTACTACGTCCACCA----GCGGATCGCATGGAGCGCATCGCTCT
CCCCCTCCCCTCCAAATAAGCTCGTCCTGTCCAGCGCTCTC-----------------AC-AATCCATTTTTGCTCCGTG
CGTC------------CGTCACTAGCGCTCGGA------AGAGGAGTGGTTGCGCCCTCGCCCAACGGCTCGCCCGGCCC
TGTGCCGCTTGTTGGCTTGCGCCCTTGTGCGGGGTGGAGTGGTTGGCTGCTGGTTTTGTGCCCATCGCCATTGCCG--GC
CGGCGCTGGGGGGCGGGCGGACGCACCCACGCGC--------------------------GAGTGACGTGACACCA--CT
GCGCGTCGCCTTGTTATATCCACCCCGCACCGCACTGATCCGATCCTCCTCGGCGGCAGCGAGCGCGGTC----------
-GGGTAAGGGAAATTTCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTTCGGCCGGCCATGGACGCGCCCTTCTTCCACGA
GCTCCGGCGGCAGGCCTCGTCCTACCTCACCGGCAAGATCCGCTCCGCGCGGCTCGCGCTCACCGACGTCACCCCGACGC
AGCTGTACGTGACCCCT--------CCCCGATCGACAATCCATTCCTGTTCTCCGTTTCATTTTCATGGTGTACCGTTAC
TCTGCTTAAGGCCTTACAGAGAGAGTGGTTATGGATGCAGGATGACTGAGGAGGCGACGAACGGCGACGCGTCGCCGCCG
AACGCCAAGACGATGAGCCTCATCGCGCGGGAGGCGTTCGAGATCGACGAGTACCTCAGGATCTCCGACATCCTCCACAC
CAGGTGACCTTCTCCCTCTCG------TTCACCGCACCGGATCGATGCTCTTCTCTTCCTCTCCGCCCGTCGTCTAACTC
GGGGCAGCATCGATGGATCGATCTTCAGGCTGGCGACGTTCGACAGGAGGCAGTGGCGGGAGCCGTACAAGGCGCTGCTG
CTGCTGGAGCACCTCCTGACGCACGGCCCCCGCAGCGTGGCCCTGGAGTTCCAGAAGGACCGGGCCGTCATCCAGCAGAT
GGCCACCTTCCAGCACATCGACGAGAGAGGGTTCGATCTCGATCTTCTCCTCTTCCTGCACACGTAATTCATTCTTATTC
AGTCC-TTAGGCTGAAAATTTTCTGATGTTCTTGTGGGATTTGCGGTGCAGTTTCAACTGGGGCCTGACGGTGAAGGGCA
AGTCGGAGCGGGTGCTAAAGCTGCTGGAGCGGGGGCCGTTCCTGGAGGAGGAGCGCGAGCGGGCGCGCAAGGTGGCGCGC
GAGATCAAGGGCTTCGGCAGCTTCAACCTCAGCAGCA---GCGGCGGCTCGCGCGCGGCGCCGCCGGTGTACTCGCGCAG
CCACTCGCGGTACGAGGACCGGCCGTGGAAGGAGGAGGACGGCGAGGAGGAGGACAAGGAGAACCTGGTGTCCCGGCCCG
ACCCGAGGAGCGTGCGCGAGGAGGTGGCGGAGGAGCTGCACCACCGCCACCCGTTCCACGGCTTCGGGCAGCAGCGGCAG
CCGGAGGCGATGCTGCTGCTCAGCCAGTGATTGGGAACTT-GGAGAGGGATGAGCGCCGTCGCCTCCCCCCACTACTGTA
CTGTACTGTACTGTACTGTACTGTATGTCGGTGTCAGCGTGTGATCTGGATCTGAAGAAGAAAAGCGTGTG------GTG
CGAGGTCAGTGGTTTGCTGACGTTGCTGAATGCTTAGGCAGCAGCTCTTTTCTTCCTCTCTCGTGTCGTACTTGTACATT
CTCTCGATCCCACGTTCCTTGAGCAACTTCT------GAACCGTGTTCAAACTGTCGCCGTCTGAACTGTGTTCCTATGG
TCTGAATTTGATACTAGTACATGAATGAACACGGAACAACAACTTCTGAACCCAGGATGCAAAGTTCTCAACTTGACAAA
TGAACAGGTCCAC-AGTACGTCATGCGATCTA-------CATCTGATTATAATTTACCGTAGAAGATAGGTGGGTGGAAT
CAAAGATTCTCAGAAGTTCACTGAATATATACTGCGAATTATGTGCTTCC----AGTTCTAGCAGAGGAAAATCAGGCAA
GGCTTACCCCAGCAA--------GACTACACGGGCAAGGGAAAATTCAGCACACAGGAGGATCACAGAACACAGGTTCGT
GTTGCACGACAGTTTCTCTATA-AAAACCCCGGTGTAAAATTTCCTCATCAAAGCCTAACTTTTCACGCTTTCAGTTTCG
GTGCAGACCTGCCTAAAAGCCTTCTTCTTTTCTCATGCCAATGGGTAGTCATCATCACATCACATGGTTTACGGTCATGA
CTACAATCGTTTTCAACCTACTCTTTCCATACAGCTACAGCAATAGTTGCTACACTTGCTAGTAGCACTAGTAGCCAGGG
TAAAGAAGAGCGCCAAATGACGCATGGCCACCTGCTGCCCAAGAAAATGCATAGTCACCTGCCAAAGATCAATATGCACA
ACAAATGTTCAGCATCACCAACTGTTTGTAATGCC--TTCTTAACGTTTTGGCTCTGCCAACATGCTCACAAAATTTCAG
TGTACAAAATACGTGGCTGCATACAA
>chr3A_218
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---------------------------------------------------------GTAGATGCTAGTGACACTGCTCC
GCGAACAGAGAAACGTGGCGACGCGTTTGTTCTCATCTCTTCCAAAACGCATCCGTGGCGTCCCCGCTGGCCGCCGCGCT
ACCACGCGAGTGGCACACCATGTCACGGCGCGACGCATAATATAGGCACCGGGGCCGCCGGCGCACGGCCAACGCGCCAC
GAGTACCCGGGCCGCATCACGCGACCTCATCCTGCCCGCCCGCCTGCCGACCTCGCACCACGGAATTCAAAATTCAAGCG
CGCTGCCGTCCCGTCCAGCCGGTTGATGTTTCGCCACTCGCCCGCCCACTCCACTCGCTGC---CCCCCCGAACGGTCCG
AAGCCACTAGAAACAAGAAGCCGCGGTGGATCCACGTACGTCCGCCAGCGGATCGCGGATCGCATGGAGCGCATCGCTCT
CCCCTCCCCCTCCAAATAAGCTCGTCCCGTCCAGCGCTCTC-----------------ACAAATCCATTTTTGCTCCGTG
CGTGCGCCCGTCACTG--------GCGCTCGGA------AGAGGAGTGGTTGCGCCCTCGCCCAACGGCTCGCCCGGCCC
CGTGCCGCTTGTTGGCTTGCGCCCTTGTGCGGGGTGGAGTGGTTGGCCGCTGGTTTTGTGCCCATCGCCGTTGCCG--GC
CGGCGCTGGGGGGCGGGCGGACGAACCCACGCGCGGGCGCGCAGCGCAGGATAGTCGCGGGAGTGACGTGACACCA--CT
GCGCGTCGCCTTGTTATATCTATCCACCCT-GCACCGGTCCGATCCTCGTCGGCGGCAACGAGCGCGGTCGGGAGGTTTG
AGGGTAAGGGGAATTTCGTGCGTGCGTGCGTGAAG-----------------CGGCCATGGACGCGCCCTTCTTCCACGA
GCTCCGGCGGCAGGCCTCCTCCTACCTCACCGGCAAGATCCGCTCCGCGCGGCTCGCGCTCACCGACGTCACCCCGACGC
AGCTGTACGTGACCCCT--------CGCCGATCGACAATCCGTTCCTGCTCTCCGTTTCT------TGGTGCACCGTTGC
TCTGCCAAGGTCCTAACAGAGAGAGTGGCCGCCCATGCAGGATGACGGAGGAGGCGACGAACGGGGACGCGTCGCCGCCG
AACGCCAAGACGATGAGCCTCATCGCGCGGGAGGCGTTCGAGATCGACGAGTACCTCAGGATCTCCGACATCCTCCACAC
CAGGTGACCTTCTCCTTCTCCCTCTCCTTCGCCGCACCGGATCGACGCTCTCCTCTTCTCCTCTGCCCGTCGTCTAACTC
GGGACA-CATCGATGGGTCGATCCTCAGGCTGGCGACGTTCGACCGGAGGCAGTGGCGGGAGCCGTACAAGGCGCTGCTG
CTGCTGGAGCACCTCCTGACGCACGGCCCCCGCAGCGTGGCCCTGGAGTTCCAGAAGGACCGGGGCGTCATCCAGCAGAT
GGCCGCCTTCCAGCACATCGACGAGCGAGGGTTCGATCTCGATCTTCTCCTATTCCTACACACGTAATTCATTCTTATTC
AGTTCGTTAGGGTGAAAATTTTCTGATGTTCTTCTGGGATTCTCGGCGCAGTTTCAACTGGGGCCTGACGGTGAAGGGCA
AGTCGGAGCGGGTGCTGAAGCTGCTGGAGCGGGGCCCGTTCCTGGAGGAGGAGCGGGAGCGGGCGCGCAAGGTGGCGCGC
GAGATCAAGGGCTTCGGCAGCTTCAACCTCAGCAGCACCGGCGGCGGCTCGCGCGCGGCGCCGCAGGTGTACGGGCGCAG
CCACTCCCGGTACGAGGACCGGCCGTGGAAGGAGGGGGACGGCGAGGGCGAGGACAAGGAGAACCTGGTGTCCCGGCCAG
ACCCGGGGAGCATGTGCGAGGAGGCGGTGGAGGAGCTGCACCACCGCCACCCGTTCCACGGCTTCGGGCAGCGGCGGCAG
CCGGAGGCGATGCTGCTGCTCAGCCAGTGATCGGGGCTTCAGGAGAGGGATGAGCGCCGTCTTCTCCCCCCTGTACT---
----------------------GTATGTCGGTGTCAGCGTGTGATCTGAATCTGAAGAAGAAGAAGAAGAAGAGCGTGTG
CGAGGTCAGTGGTTTGCTGACGTTGCTGAATGCTTAGCTAA------TTTTCTTCATCTCTCGTGTCGTACTTGTACATT
CTCTTGACCCC--GTTCCTCGAGCAACGTCTG------AACTGCGTTCAAAGCGTATCCCTCTGAACTGTGTTCCTGTTG
TCTGAATTTGATA---GTACATGAATGAACGCGGAACAAGAACTTCTGAACCCAGGACGCAAAGTTCTCAACTTGACAAA
TGAACAGGTTCCA-AGCACGTCATGCAATCTACTACGTACATCTGATTATAATTTACCGTAGAAGATAGGTGGGTGGAAC
CAAAGATTCTCAGAAGTTCACTGAATATGTACTGCGAATTATGTGCTTCCTTCCAGTTCTAGCAGAGGAAAATCAGGCAA
GGCTTACCCCAGCAGAGGAA---------------------------------------GATCACAGAACACAGATTCGT
GTTCCACGCCAGTTTCTCTGTAGAAACCCCCGGTGTAAAATTTCTTCATCAAAGCCTAGCTTTTGACGCTTTCAGTTTCA
GTGCAGACACGCGTAAAAGCCTTCTTCTTTTCTCATGCCAATGG-TAGTCATCAGCACATCACATGGTTTACGGCCATGA
CTCGAATGGATTTCAACCTACTCTTTCCATACAGCTACAGCAATAGTTGCTACACTTGCTAGTACT------------GG
TAAAGGAGAGCGCCAAATGA---------ACCTGCTGCCCAAGAAAATGCATAGCACGG---CAAAGATCAATATGCAAA
GCAAATGTTCAGCATTACCAACTGTTTGGTAGTACCTTTTTTCACTTTTTGGCTCTGCCAACAAGCTGCC-AAATTTCAG
TGTTCAAAATACGTGGCTGCATACAA
>chr3D_431
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--------------------------------------CCCGCCTGCCGTCGCCGCACCACGTAATTCAAAATTCAAACT
TGCTGCCGTCCCGTCCAACCGGTTGACGTTTCGTTTCG-------CCACCCCACTCGCTCGCTGCCCCCCGAACGGTCCG
AAGCCACTAGAAACAAGAAGCCGCAGTGGATCCACGTCC-ACGTCCACCA----GCGGATGGCATGGAGCGCAGCGCTCT
-CCCTCCCCCTCCAAATAAGCTCGTCCCGTCCAACCTCCAACGCTCCCGCCGGCTACTACCGATCCATTTTTGCCTCCTC
CCAGTCTCCGTCTCCGCGTCACTAGCGCGCTCGGGAGAGAGAGGAGTGGTTGCGCTTCCGTCGGCCCCGTA---------
----CCGCTTGTTGGCTTGCGCCCTTGTGCGGAGTGGAGTGGTTGCTGC------TTTTGCCTATCGCCACTGCCATTGC
CGGCATTGGGGGGCGGGCGGACGCACCCACGCGCGGTTGA-----------------CGGGAGTGACGTGACGGCACTCT
GCGCGTCGCCTTGTTATATCCACCCC-----GCACCGGTCCGATCCTCCTCGGCGACAACGAGCGCGGTCGGGAGGTTCG
AGGGTAAGGGGAAGTTCTTGCGTGCGTGCGTGCGTGCGTGAAA-------GCCGGCCATGGACGCGCCCTTCTTCCACGA
GCTCCGGCGGCAGGCCTCCTCCTACCTCACCGGCAAGATCCGCTCCGCGCGGCTCGTGCTCACCGACGTCACCCCGACGC
AGCTGTACGTGACCCCTCCGGCCCTCCCCGATCGACAATCCATTCCTGTCCTCCGTTTCATTTTCATGGTGTACCGTTGC
TCTGCCAAGGTCTG-ACAGAGAGAGTGGCTGCCCATGCAGGATGACGGAGGAGGCGACGAACGGGGACGCATCGCTGCCG
AACGCCAAGACGATGAGCCTCATCGCGCGGGAGGCGTTCGAGATCGACGAGTACCTCAGGATCTCCGACATCCTCCACAC
CAGGTGACCTTCTCCCTCTCCCTCTCCTTCGCCGCACCGGATCGACGCTCTTCCCTTCTTCTCCGCCCGCCGTCTAACTC
GGGGCAGCATCGATGGGTCGATCCTCAGGCTGGCGACGTTCGACCGGAGGCAGTGGCGGGAGCCGTACAAGGCGCTGCTG
CTCCTGGAGCACCTCCTGACGCACGGCCCCCGCAGCGTGGCCCTGGAGTTCCAGAAGGACCGGGAGGTCATCCGGCAGAT
GGCCACCTTCCAACACATCGACGAGAGAGGGTTCGATCTCGATCTTTGCCTCTTCCT--ACACGTTATTCATTCTTGTTC
TG-TCCTTGGGTTGAAAATTTTCTGATGTTCTTGTGGAATTTGCGGTGCAGTTTCAACTGGGGTCTGACGGTGAAGGGCA
AGTCGGAGCGGGTGCTGAAGCTGCTGGAGCGGGGGCCGTTCCTGGAGGAGGAGCGCGAGCGGGCGCGCAAGGTGGCGCGC
GAGATCAAGGGCTTCGGCAGCTTCAACCTCAGCAGCAGCGGCGGCGGCTCGCGCGCGGCGCCGCATGTGTACGGGCGGAG
CCACTCGCGGTACGAGGACCGGCCGTGGAAGGAGGAGGACGGCGAGGGCGAGGACAAGGAGAACCTGGTGTCCCGGCCCG
ACCCGAGGAGCGTCTGCGAGGAGGCGGCGGAGGAGCGGCACCACCGCCACCCGTTCCACGGCTTCGGGCAGCAGCGGCAG
CCGGAGGCGATGCTGCTGCTCGGCCAGTGATCGGGGCTTCAGGAGAGGGATGAGCGCCGTCGCCTCCCCCCTGTTCTGTA
CTGTACTGTACTT----------TATGTCGGTGTCAGCGTGTGATCTGAATCTGAAGAAGAAGAAGAA---------GTG
CGAGGTCAGTGGTTTGCTGACGTTGCTAAATGCTTAGCTAA------TTTTCGTCCTCTCTCGTGTTGTACTTGTACATT
CTCTTGATCCC--GTTCCTCGAGCAACGTCTGGTCTGGAACTGTGTTCAAACTGTGACCTCTTAAC---TGTTCCTATGG
TCCGAATTTGAC------ACATGAATGAACACGGAACAAGAACTTCTGAACCCAGGATGCAAATTTCTCAACTCGACAAA
CGAGCAGGTTCAATAGGACGTCATGCAATCTACTCAGA----------------------AGAAGCTAGGTGGGTGGAAT
CAT-GATTCTCAGAAGTTTTCTGAATATGTACTGCGAATTATGTGC----------TTCCAGCAGAGGAAAATCAGGCAG
GACTTACCCCAGGATCAAACTTGGACTACACGGGCAGGGGGAAATTCAACAC---------TCGCAGAACACAGATTCGT
GT-CCACGACAGTTTGTCTATA-AAACCCCCGGTATAAAATTTCTT------AGCCTAGCTTTTGACGCTTTCAGTTTCA
GTGCAGACATGCCTAAAAGCCTCCTTCTTTTCTCATGCCAATGGGTAGTCATCATCACATCACATGGTCTACGGTCATGA
CTCCAATCGTTTTCAAC---------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S------------S-
-S---S------S-----S---------------------------------------------------SS--------
-------------S--------------S-----------S---------------------------------------
---------------------S-----S------------S----------S----------------------------
------------------------------S------------------------------------S------------
--------------------S------------------S----------------------------------------
----SS---------------------S----------------------------------------------------
---S----------------------------------------------------------------------------
S----------------------------------------------S--------------------------------
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--------------------------S-SSS----S-S--------------------S---------------------
----------S-----------------------------SSSSSSSSSS------------------------------
------------------S-------------------------------------------------------------
------------------------------------------------------------------------------S-
-----SS-S-S---S-------------S-SSSS------------S-----------------S---------------
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--------------------S---------S--------------S------------S---------------------
----------------S------S--------------------S-----------------------------------
----------------------------------------------------------------S---------------
---------------------------------------------------------S----------------------
---S-------S--------------------------------------------------------------------
----------------S---------------------------------------------------------------
----------------------------------------------------------------S-------SS------
-----------------------------------------------SS-------------------------------
--------------S---------S-------------------------------------------------------
-------------------------------S---SSS-S-------------------------------SS-------
------------SSSSSSSSSS--------------------------S-------------S-SSSS-SS---------
-------------------------------------SS-SSSSSSS---------------------------------
----S------SS------S-------S-------------S-------------SS--S--------------------
-------------SSS-----------------------S----------------------------------------
---------S--S---S---------S-----------------------------------------------------
----------------------------S---------------------------------------------------
--------------S---------------------S---S-------S---SSSSSSS---------------S-----
---S----------------------S-----------------S-------------S-----S--------------S
--------S-----------------------------------------------------------------------
--S-------------------------------------------------------------SSSSSSSSSSSSSS--
-----S--------------SSSSSSSSS-------------------------SSSSSSSS----------------S-
S--------------S------------SS-SSS-----S--S--S-----------------S---SS-S---------
---S----------------------
>forward_36
----------------TACCTACCCCAGCAGTACCC--------------------------------------------
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>reverse_2049
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------------------------------------------------GGAGGACAAGGAGAACCTGG------------
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>forward_441
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---------------------GCATCACGTGACCTGATCCT---------------------------------------
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>reverse_2260
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-------------------ACTGTATGTCGGTGTCAGCG-----------------------------------------
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