Multiple sequence alignment - TraesCS3B01G383300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G383300 chr3B 100.000 5089 0 0 1 5089 603447215 603452303 0.000000e+00 9398.0
1 TraesCS3B01G383300 chr3B 88.561 271 23 4 2424 2693 330679942 330680205 6.360000e-84 322.0
2 TraesCS3B01G383300 chr3B 77.128 376 83 2 4717 5089 650953126 650953501 1.110000e-51 215.0
3 TraesCS3B01G383300 chr3B 75.266 376 90 1 4717 5089 651258447 651258072 5.240000e-40 176.0
4 TraesCS3B01G383300 chr3B 95.181 83 4 0 1824 1906 526495893 526495811 1.150000e-26 132.0
5 TraesCS3B01G383300 chr3B 93.103 87 6 0 1823 1909 99019527 99019441 1.490000e-25 128.0
6 TraesCS3B01G383300 chr3B 91.667 60 5 0 3748 3807 736650678 736650619 3.270000e-12 84.2
7 TraesCS3B01G383300 chr3D 92.667 1500 59 9 2041 3520 456594280 456595748 0.000000e+00 2113.0
8 TraesCS3B01G383300 chr3D 92.358 1374 55 9 1908 3235 456594121 456595490 0.000000e+00 1910.0
9 TraesCS3B01G383300 chr3D 88.861 1203 52 21 431 1557 456592617 456593813 0.000000e+00 1404.0
10 TraesCS3B01G383300 chr3D 94.222 675 29 7 3620 4292 456595809 456596475 0.000000e+00 1022.0
11 TraesCS3B01G383300 chr3D 96.735 490 16 0 4600 5089 456596750 456597239 0.000000e+00 817.0
12 TraesCS3B01G383300 chr3D 84.636 371 45 6 1463 1825 456593755 456594121 4.840000e-95 359.0
13 TraesCS3B01G383300 chr3D 85.978 271 20 3 1 254 456591873 456592142 1.810000e-69 274.0
14 TraesCS3B01G383300 chr3D 76.596 376 85 2 4717 5089 488117910 488118285 2.400000e-48 204.0
15 TraesCS3B01G383300 chr3D 74.734 376 92 1 4717 5089 488236052 488235677 1.130000e-36 165.0
16 TraesCS3B01G383300 chr3D 93.182 88 5 1 1820 1906 329496861 329496948 1.490000e-25 128.0
17 TraesCS3B01G383300 chr3D 96.970 33 0 1 2367 2399 414906178 414906209 3.000000e-03 54.7
18 TraesCS3B01G383300 chr3A 89.145 1299 81 28 3007 4292 599381707 599382958 0.000000e+00 1563.0
19 TraesCS3B01G383300 chr3A 92.634 991 47 8 1908 2872 599380720 599381710 0.000000e+00 1402.0
20 TraesCS3B01G383300 chr3A 85.385 1300 83 28 601 1825 599379453 599380720 0.000000e+00 1249.0
21 TraesCS3B01G383300 chr3A 96.735 490 16 0 4600 5089 599384462 599384951 0.000000e+00 817.0
22 TraesCS3B01G383300 chr3A 91.403 221 19 0 2424 2644 666820362 666820142 2.300000e-78 303.0
23 TraesCS3B01G383300 chr3A 76.517 379 83 4 4717 5089 631727890 631728268 8.640000e-48 202.0
24 TraesCS3B01G383300 chr3A 88.571 140 13 3 1 138 599378733 599378871 3.150000e-37 167.0
25 TraesCS3B01G383300 chr3A 89.655 58 5 1 197 254 599379189 599379245 7.070000e-09 73.1
26 TraesCS3B01G383300 chr3A 100.000 29 0 0 2372 2400 600316558 600316530 3.000000e-03 54.7
27 TraesCS3B01G383300 chr5D 86.824 296 34 4 2688 2979 404748626 404748920 4.910000e-85 326.0
28 TraesCS3B01G383300 chr5D 95.181 83 4 0 1824 1906 382868411 382868493 1.150000e-26 132.0
29 TraesCS3B01G383300 chr5D 93.023 86 6 0 1824 1909 411995116 411995031 5.350000e-25 126.0
30 TraesCS3B01G383300 chr7A 86.149 296 35 5 2688 2979 477604580 477604287 1.060000e-81 315.0
31 TraesCS3B01G383300 chr7A 93.103 87 6 0 1824 1910 596726035 596725949 1.490000e-25 128.0
32 TraesCS3B01G383300 chr7A 96.875 32 1 0 2372 2403 501067493 501067462 3.000000e-03 54.7
33 TraesCS3B01G383300 chr1B 85.859 297 35 6 2688 2979 80103784 80103490 4.950000e-80 309.0
34 TraesCS3B01G383300 chr2B 87.500 272 25 5 2424 2693 599830795 599830531 6.400000e-79 305.0
35 TraesCS3B01G383300 chr2B 84.672 137 13 2 4921 5057 627652435 627652307 4.130000e-26 130.0
36 TraesCS3B01G383300 chr6B 91.403 221 19 0 2424 2644 172705731 172705511 2.300000e-78 303.0
37 TraesCS3B01G383300 chr6B 85.473 296 38 4 2688 2979 221738493 221738199 2.300000e-78 303.0
38 TraesCS3B01G383300 chr6B 96.429 84 3 0 1823 1906 8403635 8403552 6.870000e-29 139.0
39 TraesCS3B01G383300 chr6B 93.750 64 3 1 3748 3810 605554236 605554299 1.510000e-15 95.3
40 TraesCS3B01G383300 chr6B 94.286 35 1 1 2372 2406 123500541 123500508 9.000000e-03 52.8
41 TraesCS3B01G383300 chr2A 85.473 296 38 4 2688 2979 741419800 741420094 2.300000e-78 303.0
42 TraesCS3B01G383300 chr2A 91.892 37 3 0 2372 2408 695313933 695313897 9.000000e-03 52.8
43 TraesCS3B01G383300 chr7B 86.813 273 31 5 2688 2958 478040671 478040402 2.980000e-77 300.0
44 TraesCS3B01G383300 chr7B 97.222 36 1 0 3777 3812 521143273 521143308 1.530000e-05 62.1
45 TraesCS3B01G383300 chr1D 82.216 343 59 2 4709 5050 394670660 394671001 1.390000e-75 294.0
46 TraesCS3B01G383300 chr1D 94.318 88 5 0 1822 1909 363804258 363804171 8.890000e-28 135.0
47 TraesCS3B01G383300 chr1D 91.954 87 6 1 1823 1909 97862744 97862659 2.490000e-23 121.0
48 TraesCS3B01G383300 chr4B 88.889 216 22 2 2688 2902 560902965 560903179 1.090000e-66 265.0
49 TraesCS3B01G383300 chr4B 96.970 33 1 0 3786 3818 139702010 139702042 7.120000e-04 56.5
50 TraesCS3B01G383300 chr6A 94.318 88 4 1 1819 1906 27782697 27782783 3.200000e-27 134.0
51 TraesCS3B01G383300 chr4A 94.048 84 5 0 1823 1906 113335691 113335608 1.490000e-25 128.0
52 TraesCS3B01G383300 chr4A 96.875 32 0 1 3786 3817 175550106 175550136 9.000000e-03 52.8
53 TraesCS3B01G383300 chr2D 91.860 86 7 0 1824 1909 454026263 454026178 2.490000e-23 121.0
54 TraesCS3B01G383300 chr2D 84.146 82 11 2 197 277 498865869 498865789 1.520000e-10 78.7
55 TraesCS3B01G383300 chr2D 100.000 32 0 0 3787 3818 616935200 616935169 5.500000e-05 60.2
56 TraesCS3B01G383300 chr2D 94.286 35 2 0 2366 2400 166738807 166738841 3.000000e-03 54.7
57 TraesCS3B01G383300 chr4D 90.909 88 8 0 1819 1906 266786405 266786492 8.950000e-23 119.0
58 TraesCS3B01G383300 chr1A 90.698 86 8 0 1824 1909 439847104 439847019 1.160000e-21 115.0
59 TraesCS3B01G383300 chr1A 100.000 34 0 0 3777 3810 578016642 578016675 4.250000e-06 63.9
60 TraesCS3B01G383300 chrUn 86.667 75 10 0 3737 3811 217865590 217865516 3.270000e-12 84.2
61 TraesCS3B01G383300 chrUn 85.897 78 11 0 3734 3811 218107981 218108058 3.270000e-12 84.2
62 TraesCS3B01G383300 chrUn 85.897 78 11 0 3734 3811 478575281 478575358 3.270000e-12 84.2
63 TraesCS3B01G383300 chr5A 94.118 34 2 0 2372 2405 326533321 326533288 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G383300 chr3B 603447215 603452303 5088 False 9398.000000 9398 100.000000 1 5089 1 chr3B.!!$F2 5088
1 TraesCS3B01G383300 chr3D 456591873 456597239 5366 False 1128.428571 2113 90.779571 1 5089 7 chr3D.!!$F4 5088
2 TraesCS3B01G383300 chr3A 599378733 599384951 6218 False 878.516667 1563 90.354167 1 5089 6 chr3A.!!$F2 5088

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.240678 TGTTGCACGGACATGAATGC 59.759 50.0 0.0 4.0 38.59 3.56 F
1190 1826 0.179142 GGTACGTCGCCTCTTCTTCC 60.179 60.0 0.0 0.0 0.00 3.46 F
1906 2632 0.178932 TATCATGGGACGGAGGGAGG 60.179 60.0 0.0 0.0 0.00 4.30 F
2751 3504 0.973632 ACACATTAGCCAGGACGTGA 59.026 50.0 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 2613 0.178932 CCTCCCTCCGTCCCATGATA 60.179 60.0 0.0 0.0 0.0 2.15 R
3095 3867 0.780637 TGGCCCTTAACCCACAATGA 59.219 50.0 0.0 0.0 0.0 2.57 R
3564 4336 0.106268 TGTGTTGGCCCAGTGTCATT 60.106 50.0 0.0 0.0 0.0 2.57 R
4563 5430 0.108138 CCCTCGTTCTTTCGCCAGAT 60.108 55.0 0.0 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.606096 TTCGCCATCTCCAAAGTCGA 59.394 50.000 0.00 0.00 0.00 4.20
48 49 2.416836 CCATCTCCAAAGTCGACGCTAA 60.417 50.000 10.46 0.00 0.00 3.09
54 55 2.096909 CCAAAGTCGACGCTAAGTGTTG 60.097 50.000 10.46 5.77 0.00 3.33
69 70 0.240678 TGTTGCACGGACATGAATGC 59.759 50.000 0.00 4.00 38.59 3.56
75 76 2.599973 GCACGGACATGAATGCATTTTC 59.400 45.455 14.33 2.94 38.00 2.29
177 181 3.991536 GAGTTCGGCTCGGTGCTCC 62.992 68.421 1.77 0.00 42.39 4.70
254 527 8.685838 AAATGTTTGAGCCACTAACTTAAGTA 57.314 30.769 8.92 0.00 35.79 2.24
258 531 9.953565 TGTTTGAGCCACTAACTTAAGTATATT 57.046 29.630 8.92 0.00 35.79 1.28
261 534 7.792032 TGAGCCACTAACTTAAGTATATTGCT 58.208 34.615 8.92 13.98 0.00 3.91
262 535 7.710907 TGAGCCACTAACTTAAGTATATTGCTG 59.289 37.037 20.07 6.52 0.00 4.41
292 652 4.546829 TGTCCCTGTAGACACATTTACC 57.453 45.455 0.00 0.00 41.78 2.85
299 659 5.421056 CCTGTAGACACATTTACCAGTAGGA 59.579 44.000 0.00 0.00 34.49 2.94
300 660 6.098409 CCTGTAGACACATTTACCAGTAGGAT 59.902 42.308 0.00 0.00 34.49 3.24
305 665 5.175859 ACACATTTACCAGTAGGATCAACG 58.824 41.667 0.00 0.00 38.69 4.10
309 669 1.267121 ACCAGTAGGATCAACGCACT 58.733 50.000 0.00 0.00 38.69 4.40
331 691 8.598924 GCACTAGAATAATAACCATCATCGATG 58.401 37.037 19.61 19.61 39.52 3.84
344 704 6.313905 ACCATCATCGATGAAAAGAAGTGTAC 59.686 38.462 30.41 0.00 42.09 2.90
386 746 2.357034 ACACAAGCGCGGACGAAT 60.357 55.556 8.83 0.00 43.93 3.34
429 1000 6.703319 TCCATTAAAGATAAACACTGACCGA 58.297 36.000 0.00 0.00 0.00 4.69
452 1023 3.334691 TCCGACGAGATGCAAATTCTTT 58.665 40.909 0.00 0.00 0.00 2.52
475 1057 1.052617 TCATCACCTCCAAACCGTCA 58.947 50.000 0.00 0.00 0.00 4.35
533 1126 0.248458 CACCACCACGCAAACAGTTC 60.248 55.000 0.00 0.00 0.00 3.01
595 1189 3.963383 ACAAACGAGTGACCACAAATC 57.037 42.857 2.78 0.00 0.00 2.17
704 1300 0.389948 GCGTCACGAGGATCCAAAGT 60.390 55.000 15.82 7.75 0.00 2.66
743 1340 1.302832 CGCACAAGCCTTCCTTCCT 60.303 57.895 0.00 0.00 37.52 3.36
744 1341 1.301677 CGCACAAGCCTTCCTTCCTC 61.302 60.000 0.00 0.00 37.52 3.71
773 1371 1.067071 CCTTCGCCGAAACCTTACTCT 60.067 52.381 0.00 0.00 0.00 3.24
779 1377 1.900486 CCGAAACCTTACTCTCCACCT 59.100 52.381 0.00 0.00 0.00 4.00
780 1378 2.302157 CCGAAACCTTACTCTCCACCTT 59.698 50.000 0.00 0.00 0.00 3.50
781 1379 3.586892 CGAAACCTTACTCTCCACCTTC 58.413 50.000 0.00 0.00 0.00 3.46
786 1384 0.494551 TTACTCTCCACCTTCCCCCA 59.505 55.000 0.00 0.00 0.00 4.96
787 1385 0.722676 TACTCTCCACCTTCCCCCAT 59.277 55.000 0.00 0.00 0.00 4.00
862 1483 4.772687 GGGAAGGAACCCGCGACC 62.773 72.222 8.23 5.52 40.49 4.79
940 1572 0.949105 GTCGCTTTCGCCTTTCTCCA 60.949 55.000 0.00 0.00 35.26 3.86
944 1576 2.227968 CTTTCGCCTTTCTCCACGCG 62.228 60.000 3.53 3.53 45.76 6.01
1190 1826 0.179142 GGTACGTCGCCTCTTCTTCC 60.179 60.000 0.00 0.00 0.00 3.46
1207 1846 1.815421 CCTTGATCCGACGCCCTTG 60.815 63.158 0.00 0.00 0.00 3.61
1211 1850 4.143333 ATCCGACGCCCTTGTCCG 62.143 66.667 0.00 0.00 35.40 4.79
1226 1865 1.072489 TGTCCGTGGCAATTTGTCCTA 59.928 47.619 0.00 0.00 0.00 2.94
1296 1961 4.389576 GGTCTTTGCTGCGGTGCG 62.390 66.667 0.00 0.00 35.36 5.34
1327 1992 1.598685 GCTTGTCGTTTCCCCGGAA 60.599 57.895 0.73 0.00 0.00 4.30
1415 2080 6.425417 TGCGAATTTTGTCAAGTAGTATGTGA 59.575 34.615 0.00 0.00 0.00 3.58
1450 2115 7.718314 CACATCATTCTTCTTTCCTATGGATCA 59.282 37.037 0.00 0.00 0.00 2.92
1474 2150 7.286546 TCAAATTGGGTGACAGATTAAGAACAA 59.713 33.333 0.00 0.00 0.00 2.83
1509 2189 5.169295 ACGACTGAACAAGCCTAGATTAAC 58.831 41.667 0.00 0.00 0.00 2.01
1512 2192 6.313905 CGACTGAACAAGCCTAGATTAACAAT 59.686 38.462 0.00 0.00 0.00 2.71
1514 2194 9.162764 GACTGAACAAGCCTAGATTAACAATAA 57.837 33.333 0.00 0.00 0.00 1.40
1539 2223 8.907222 AAATCAAATTGGCTGATTAAACAAGT 57.093 26.923 4.65 0.00 41.56 3.16
1606 2328 4.191544 TCATGTGCCTGCTATTCAACTAC 58.808 43.478 0.00 0.00 0.00 2.73
1607 2329 3.981071 TGTGCCTGCTATTCAACTACT 57.019 42.857 0.00 0.00 0.00 2.57
1609 2331 4.755411 TGTGCCTGCTATTCAACTACTAC 58.245 43.478 0.00 0.00 0.00 2.73
1611 2333 5.046591 TGTGCCTGCTATTCAACTACTACTT 60.047 40.000 0.00 0.00 0.00 2.24
1612 2334 6.153851 TGTGCCTGCTATTCAACTACTACTTA 59.846 38.462 0.00 0.00 0.00 2.24
1613 2335 6.476053 GTGCCTGCTATTCAACTACTACTTAC 59.524 42.308 0.00 0.00 0.00 2.34
1614 2336 6.380274 TGCCTGCTATTCAACTACTACTTACT 59.620 38.462 0.00 0.00 0.00 2.24
1615 2337 7.093465 TGCCTGCTATTCAACTACTACTTACTT 60.093 37.037 0.00 0.00 0.00 2.24
1616 2338 7.764901 GCCTGCTATTCAACTACTACTTACTTT 59.235 37.037 0.00 0.00 0.00 2.66
1647 2372 4.082408 TGGATTGTGACAGGTAGACTTACG 60.082 45.833 0.00 0.00 0.00 3.18
1650 2375 4.233123 TGTGACAGGTAGACTTACGTTG 57.767 45.455 0.00 0.00 0.00 4.10
1659 2384 6.317140 CAGGTAGACTTACGTTGGTAGATGTA 59.683 42.308 0.00 0.00 0.00 2.29
1660 2385 6.317391 AGGTAGACTTACGTTGGTAGATGTAC 59.683 42.308 0.00 0.00 0.00 2.90
1673 2398 5.542635 TGGTAGATGTACTGTTTGACCTTCT 59.457 40.000 0.00 0.00 0.00 2.85
1674 2399 6.722590 TGGTAGATGTACTGTTTGACCTTCTA 59.277 38.462 0.00 0.00 0.00 2.10
1677 2402 7.304497 AGATGTACTGTTTGACCTTCTAACT 57.696 36.000 0.00 0.00 34.14 2.24
1678 2403 7.736893 AGATGTACTGTTTGACCTTCTAACTT 58.263 34.615 0.00 0.00 34.14 2.66
1685 2410 7.996644 ACTGTTTGACCTTCTAACTTAAATCCA 59.003 33.333 2.92 0.00 34.14 3.41
1692 2417 8.581253 ACCTTCTAACTTAAATCCATTTCAGG 57.419 34.615 0.00 0.00 0.00 3.86
1747 2473 8.899771 GCCTACAATTAATATGGTTGTACTGTT 58.100 33.333 0.00 0.00 37.30 3.16
1770 2496 5.968254 TGCATTAATACAGTAGTGTTCCGA 58.032 37.500 8.85 0.00 38.19 4.55
1775 2501 5.769484 AATACAGTAGTGTTCCGATCGAT 57.231 39.130 18.66 0.00 38.19 3.59
1829 2555 9.832445 TGTTATGTGAATTTCTTATCTACTCCC 57.168 33.333 0.00 0.00 0.00 4.30
1832 2558 7.125792 TGTGAATTTCTTATCTACTCCCTCC 57.874 40.000 0.00 0.00 0.00 4.30
1833 2559 6.672218 TGTGAATTTCTTATCTACTCCCTCCA 59.328 38.462 0.00 0.00 0.00 3.86
1834 2560 7.348274 TGTGAATTTCTTATCTACTCCCTCCAT 59.652 37.037 0.00 0.00 0.00 3.41
1835 2561 7.875554 GTGAATTTCTTATCTACTCCCTCCATC 59.124 40.741 0.00 0.00 0.00 3.51
1836 2562 7.791766 TGAATTTCTTATCTACTCCCTCCATCT 59.208 37.037 0.00 0.00 0.00 2.90
1837 2563 7.790782 ATTTCTTATCTACTCCCTCCATCTC 57.209 40.000 0.00 0.00 0.00 2.75
1838 2564 5.932027 TCTTATCTACTCCCTCCATCTCA 57.068 43.478 0.00 0.00 0.00 3.27
1839 2565 6.476409 TCTTATCTACTCCCTCCATCTCAT 57.524 41.667 0.00 0.00 0.00 2.90
1840 2566 7.590359 TCTTATCTACTCCCTCCATCTCATA 57.410 40.000 0.00 0.00 0.00 2.15
1841 2567 8.001300 TCTTATCTACTCCCTCCATCTCATAA 57.999 38.462 0.00 0.00 0.00 1.90
1842 2568 8.628281 TCTTATCTACTCCCTCCATCTCATAAT 58.372 37.037 0.00 0.00 0.00 1.28
1843 2569 9.928618 CTTATCTACTCCCTCCATCTCATAATA 57.071 37.037 0.00 0.00 0.00 0.98
1847 2573 9.928618 TCTACTCCCTCCATCTCATAATATAAG 57.071 37.037 0.00 0.00 0.00 1.73
1848 2574 9.928618 CTACTCCCTCCATCTCATAATATAAGA 57.071 37.037 0.00 0.00 0.00 2.10
1849 2575 8.837099 ACTCCCTCCATCTCATAATATAAGAG 57.163 38.462 0.00 0.00 0.00 2.85
1850 2576 7.344352 ACTCCCTCCATCTCATAATATAAGAGC 59.656 40.741 0.00 0.00 0.00 4.09
1851 2577 7.191918 TCCCTCCATCTCATAATATAAGAGCA 58.808 38.462 0.00 0.00 0.00 4.26
1852 2578 7.848361 TCCCTCCATCTCATAATATAAGAGCAT 59.152 37.037 0.00 0.00 0.00 3.79
1853 2579 8.492782 CCCTCCATCTCATAATATAAGAGCATT 58.507 37.037 0.00 0.00 0.00 3.56
1854 2580 9.902684 CCTCCATCTCATAATATAAGAGCATTT 57.097 33.333 0.00 0.00 0.00 2.32
1867 2593 7.986085 ATAAGAGCATTTTTGACACTACACT 57.014 32.000 0.00 0.00 0.00 3.55
1869 2595 7.426929 AAGAGCATTTTTGACACTACACTAG 57.573 36.000 0.00 0.00 0.00 2.57
1870 2596 6.525629 AGAGCATTTTTGACACTACACTAGT 58.474 36.000 0.00 0.00 40.28 2.57
1881 2607 3.898529 ACTACACTAGTGTCAAGAACGC 58.101 45.455 31.11 0.00 43.74 4.84
1883 2609 3.014604 ACACTAGTGTCAAGAACGCTC 57.985 47.619 22.95 0.00 45.69 5.03
1884 2610 2.623889 ACACTAGTGTCAAGAACGCTCT 59.376 45.455 22.95 0.00 45.69 4.09
1885 2611 3.068307 ACACTAGTGTCAAGAACGCTCTT 59.932 43.478 22.95 0.00 45.69 2.85
1886 2612 4.277672 ACACTAGTGTCAAGAACGCTCTTA 59.722 41.667 22.95 0.00 45.69 2.10
1887 2613 5.047943 ACACTAGTGTCAAGAACGCTCTTAT 60.048 40.000 22.95 0.00 45.69 1.73
1888 2614 6.150641 ACACTAGTGTCAAGAACGCTCTTATA 59.849 38.462 22.95 0.00 45.69 0.98
1889 2615 7.148052 ACACTAGTGTCAAGAACGCTCTTATAT 60.148 37.037 22.95 0.00 45.69 0.86
1890 2616 7.377397 CACTAGTGTCAAGAACGCTCTTATATC 59.623 40.741 15.06 0.00 45.69 1.63
1891 2617 6.208988 AGTGTCAAGAACGCTCTTATATCA 57.791 37.500 0.00 0.00 45.69 2.15
1892 2618 6.810911 AGTGTCAAGAACGCTCTTATATCAT 58.189 36.000 0.00 0.00 45.69 2.45
1893 2619 6.699204 AGTGTCAAGAACGCTCTTATATCATG 59.301 38.462 0.00 0.00 45.69 3.07
1894 2620 5.985530 TGTCAAGAACGCTCTTATATCATGG 59.014 40.000 0.00 0.00 40.05 3.66
1895 2621 5.406780 GTCAAGAACGCTCTTATATCATGGG 59.593 44.000 0.00 0.00 40.05 4.00
1896 2622 5.304357 TCAAGAACGCTCTTATATCATGGGA 59.696 40.000 0.00 0.00 40.05 4.37
1897 2623 5.140747 AGAACGCTCTTATATCATGGGAC 57.859 43.478 0.00 0.00 0.00 4.46
1898 2624 3.577649 ACGCTCTTATATCATGGGACG 57.422 47.619 0.00 0.00 0.00 4.79
1899 2625 2.231478 ACGCTCTTATATCATGGGACGG 59.769 50.000 0.00 0.00 0.00 4.79
1900 2626 2.492088 CGCTCTTATATCATGGGACGGA 59.508 50.000 0.00 0.00 0.00 4.69
1901 2627 3.428180 CGCTCTTATATCATGGGACGGAG 60.428 52.174 0.00 0.00 0.00 4.63
1902 2628 3.118956 GCTCTTATATCATGGGACGGAGG 60.119 52.174 0.00 0.00 0.00 4.30
1903 2629 3.441101 TCTTATATCATGGGACGGAGGG 58.559 50.000 0.00 0.00 0.00 4.30
1904 2630 3.076937 TCTTATATCATGGGACGGAGGGA 59.923 47.826 0.00 0.00 0.00 4.20
1905 2631 1.944177 ATATCATGGGACGGAGGGAG 58.056 55.000 0.00 0.00 0.00 4.30
1906 2632 0.178932 TATCATGGGACGGAGGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
1924 2650 1.010170 AGGAAGCCTCTAACCCATCCT 59.990 52.381 0.00 0.00 0.00 3.24
1937 2663 7.928873 TCTAACCCATCCTGAAGAAGTTTAAT 58.071 34.615 0.00 0.00 0.00 1.40
1942 2668 7.508977 ACCCATCCTGAAGAAGTTTAATTTTGA 59.491 33.333 0.00 0.00 0.00 2.69
2022 2749 8.994170 GGAGTAACATCTTATAATCCTTGCTTC 58.006 37.037 0.00 0.00 0.00 3.86
2025 2752 9.209175 GTAACATCTTATAATCCTTGCTTCGAT 57.791 33.333 0.00 0.00 0.00 3.59
2099 2851 1.347707 CAGACTACTGGTTTGGAGCCA 59.652 52.381 0.00 0.00 40.14 4.75
2117 2869 1.750778 CCAGAGAGACAGAGGCTCTTC 59.249 57.143 15.90 15.22 42.50 2.87
2126 2878 1.219393 GAGGCTCTTCTTCCGTGGG 59.781 63.158 7.40 0.00 0.00 4.61
2303 3055 4.790765 TCGTGTCAGATCTGAAGTTGAT 57.209 40.909 26.70 0.00 41.85 2.57
2306 3058 6.687604 TCGTGTCAGATCTGAAGTTGATAAA 58.312 36.000 26.70 0.00 41.85 1.40
2369 3121 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
2377 3129 2.889045 CCTCCGTCCCATAATCGTCTTA 59.111 50.000 0.00 0.00 0.00 2.10
2403 3155 1.041437 GGGACGGAGGGAGTAAGATG 58.959 60.000 0.00 0.00 0.00 2.90
2580 3333 3.155750 GGCATAGAGGCAGAGGGG 58.844 66.667 0.00 0.00 43.51 4.79
2627 3380 4.638304 GAGGTACACTTCCTTGCTGTTAA 58.362 43.478 0.00 0.00 35.20 2.01
2674 3427 9.990360 TGAGTTATCCGATTACATGCTTTATTA 57.010 29.630 0.00 0.00 0.00 0.98
2748 3501 1.337728 TGTCACACATTAGCCAGGACG 60.338 52.381 0.00 0.00 0.00 4.79
2751 3504 0.973632 ACACATTAGCCAGGACGTGA 59.026 50.000 0.00 0.00 0.00 4.35
2764 3517 3.250762 CAGGACGTGATCTTGCTCAAAAA 59.749 43.478 0.00 0.00 0.00 1.94
2787 3540 4.875544 TTGTTCAAAACGAAGAGGACTG 57.124 40.909 0.00 0.00 33.09 3.51
2924 3677 6.808321 TCCTCATACCAAGTAAACTAGCAT 57.192 37.500 0.00 0.00 0.00 3.79
2935 3688 8.768955 CCAAGTAAACTAGCATCTGTAATGATC 58.231 37.037 0.00 0.00 0.00 2.92
2943 3696 5.314529 AGCATCTGTAATGATCCAATCTGG 58.685 41.667 0.00 0.00 39.43 3.86
3015 3784 1.897560 GGCTGCACCTCAGTAGTTTT 58.102 50.000 0.50 0.00 44.66 2.43
3063 3832 1.135141 GCTCTCACCTAGCAGTGACTG 60.135 57.143 8.52 8.52 41.78 3.51
3151 3923 6.636705 TGTCTTGCTCGGTTATTACAGTAAT 58.363 36.000 10.71 10.71 0.00 1.89
3155 3927 8.418662 TCTTGCTCGGTTATTACAGTAATACAT 58.581 33.333 11.93 0.00 30.81 2.29
3202 3974 4.127171 TGTTCAGTCTCAAGTTTGTAGCC 58.873 43.478 0.00 0.00 0.00 3.93
3284 4056 4.892934 TCAAACATGCAAAGTCCTAGGTTT 59.107 37.500 9.08 0.00 0.00 3.27
3299 4071 2.357760 TTTACCGGGCTGTGTCGC 60.358 61.111 6.32 0.00 0.00 5.19
3353 4125 2.477845 AAATCTTTGCCCCATGTTGC 57.522 45.000 0.00 0.00 0.00 4.17
3363 4135 2.681422 CCCCATGTTGCATAATCCCTT 58.319 47.619 0.00 0.00 0.00 3.95
3489 4261 6.687604 TGAATAAGATCGGCGAAATCATCTA 58.312 36.000 15.93 1.81 0.00 1.98
3546 4318 8.737168 TTTCATTGAGGAGATTATACACAAGG 57.263 34.615 0.00 0.00 0.00 3.61
3547 4319 7.437713 TCATTGAGGAGATTATACACAAGGT 57.562 36.000 0.00 0.00 0.00 3.50
3548 4320 7.275183 TCATTGAGGAGATTATACACAAGGTG 58.725 38.462 0.00 0.00 39.75 4.00
3560 4332 4.305989 ACACAAGGTGTACTGCAAAATG 57.694 40.909 0.00 0.00 45.56 2.32
3561 4333 3.951037 ACACAAGGTGTACTGCAAAATGA 59.049 39.130 0.00 0.00 45.56 2.57
3562 4334 4.400884 ACACAAGGTGTACTGCAAAATGAA 59.599 37.500 0.00 0.00 45.56 2.57
3563 4335 5.068987 ACACAAGGTGTACTGCAAAATGAAT 59.931 36.000 0.00 0.00 45.56 2.57
3564 4336 6.264292 ACACAAGGTGTACTGCAAAATGAATA 59.736 34.615 0.00 0.00 45.56 1.75
3565 4337 7.144661 CACAAGGTGTACTGCAAAATGAATAA 58.855 34.615 0.00 0.00 0.00 1.40
3566 4338 7.814107 CACAAGGTGTACTGCAAAATGAATAAT 59.186 33.333 0.00 0.00 0.00 1.28
3567 4339 7.814107 ACAAGGTGTACTGCAAAATGAATAATG 59.186 33.333 0.00 0.00 0.00 1.90
3568 4340 7.701539 AGGTGTACTGCAAAATGAATAATGA 57.298 32.000 0.00 0.00 0.00 2.57
3569 4341 7.538575 AGGTGTACTGCAAAATGAATAATGAC 58.461 34.615 0.00 0.00 0.00 3.06
3570 4342 7.176515 AGGTGTACTGCAAAATGAATAATGACA 59.823 33.333 0.00 0.00 0.00 3.58
3571 4343 7.273381 GGTGTACTGCAAAATGAATAATGACAC 59.727 37.037 0.00 0.00 0.00 3.67
3605 4430 9.160496 ACACAATTTTGATTTTTCAGCTTTACA 57.840 25.926 0.00 0.00 0.00 2.41
3618 4443 9.897744 TTTTCAGCTTTACATAGTCAAAATGAG 57.102 29.630 0.00 0.00 0.00 2.90
3640 4479 8.078060 TGAGTAATTGAGAGACATATTGGTCA 57.922 34.615 0.00 0.00 40.29 4.02
3709 4548 5.410355 AAAATCCCTGTCATGTCCATTTG 57.590 39.130 0.00 0.00 0.00 2.32
3761 4600 6.223120 ACTTCCTTTGTTCCAAAATACATGC 58.777 36.000 0.00 0.00 0.00 4.06
3842 4682 8.962884 ACCTTTGCATTTTTCAAATAAAGACT 57.037 26.923 0.00 0.00 33.54 3.24
3986 4826 1.606668 GCCAAATCTGTTTCGGTGTCA 59.393 47.619 0.00 0.00 0.00 3.58
4147 4987 0.435008 GCGACGAAAGCTACTGTGTG 59.565 55.000 0.00 0.00 0.00 3.82
4248 5088 6.143758 TGCAAAATCGTTATGCTTTCAAGTTC 59.856 34.615 0.00 0.00 40.66 3.01
4249 5089 6.363357 GCAAAATCGTTATGCTTTCAAGTTCT 59.637 34.615 0.00 0.00 37.12 3.01
4250 5090 7.409767 GCAAAATCGTTATGCTTTCAAGTTCTC 60.410 37.037 0.00 0.00 37.12 2.87
4256 5096 3.648339 TGCTTTCAAGTTCTCCAATGC 57.352 42.857 0.00 0.00 0.00 3.56
4262 5102 3.415212 TCAAGTTCTCCAATGCTCTTGG 58.585 45.455 11.19 11.19 40.87 3.61
4288 5128 2.029110 GCGTGTGGTACCTGGTAAACTA 60.029 50.000 14.36 0.00 0.00 2.24
4292 5132 4.992951 GTGTGGTACCTGGTAAACTAGTTG 59.007 45.833 14.36 0.00 0.00 3.16
4293 5133 3.999001 GTGGTACCTGGTAAACTAGTTGC 59.001 47.826 14.36 5.42 0.00 4.17
4294 5134 3.008266 TGGTACCTGGTAAACTAGTTGCC 59.992 47.826 14.36 14.68 42.13 4.52
4299 5139 3.134574 TGGTAAACTAGTTGCCAGGTG 57.865 47.619 21.48 0.00 46.04 4.00
4300 5140 2.440253 TGGTAAACTAGTTGCCAGGTGT 59.560 45.455 21.48 3.38 46.04 4.16
4301 5141 2.812011 GGTAAACTAGTTGCCAGGTGTG 59.188 50.000 19.07 0.00 41.45 3.82
4303 5143 1.967319 AACTAGTTGCCAGGTGTGTG 58.033 50.000 7.48 0.00 0.00 3.82
4305 5145 1.070758 ACTAGTTGCCAGGTGTGTGAG 59.929 52.381 0.00 0.00 0.00 3.51
4306 5146 0.250295 TAGTTGCCAGGTGTGTGAGC 60.250 55.000 0.00 0.00 0.00 4.26
4307 5147 1.823470 GTTGCCAGGTGTGTGAGCA 60.823 57.895 0.00 0.00 0.00 4.26
4309 5149 1.174078 TTGCCAGGTGTGTGAGCATG 61.174 55.000 0.00 0.00 32.67 4.06
4310 5150 1.601759 GCCAGGTGTGTGAGCATGT 60.602 57.895 0.00 0.00 0.00 3.21
4312 5152 1.730501 CCAGGTGTGTGAGCATGTAG 58.269 55.000 0.00 0.00 0.00 2.74
4326 5166 2.677836 GCATGTAGCTGGAAACGAATCA 59.322 45.455 0.00 0.00 41.15 2.57
4327 5167 3.242543 GCATGTAGCTGGAAACGAATCAG 60.243 47.826 0.00 0.00 41.15 2.90
4328 5168 3.953712 TGTAGCTGGAAACGAATCAGA 57.046 42.857 0.00 0.00 0.00 3.27
4329 5169 3.585862 TGTAGCTGGAAACGAATCAGAC 58.414 45.455 0.00 0.00 0.00 3.51
4330 5170 1.714794 AGCTGGAAACGAATCAGACG 58.285 50.000 0.00 0.00 0.00 4.18
4331 5171 1.000955 AGCTGGAAACGAATCAGACGT 59.999 47.619 0.00 0.00 45.89 4.34
4341 5181 4.171754 ACGAATCAGACGTTAACCTAAGC 58.828 43.478 0.00 0.00 41.18 3.09
4342 5182 3.550678 CGAATCAGACGTTAACCTAAGCC 59.449 47.826 0.00 0.00 0.00 4.35
4343 5183 4.501071 GAATCAGACGTTAACCTAAGCCA 58.499 43.478 0.00 0.00 0.00 4.75
4344 5184 4.755266 ATCAGACGTTAACCTAAGCCAT 57.245 40.909 0.00 0.00 0.00 4.40
4345 5185 5.864418 ATCAGACGTTAACCTAAGCCATA 57.136 39.130 0.00 0.00 0.00 2.74
4346 5186 5.258456 TCAGACGTTAACCTAAGCCATAG 57.742 43.478 0.00 0.00 0.00 2.23
4347 5187 4.708421 TCAGACGTTAACCTAAGCCATAGT 59.292 41.667 0.00 0.00 0.00 2.12
4348 5188 5.041940 CAGACGTTAACCTAAGCCATAGTC 58.958 45.833 0.00 0.00 0.00 2.59
4349 5189 4.954826 AGACGTTAACCTAAGCCATAGTCT 59.045 41.667 0.00 0.22 0.00 3.24
4350 5190 5.007385 ACGTTAACCTAAGCCATAGTCTG 57.993 43.478 0.00 0.00 0.00 3.51
4362 5202 2.205074 CATAGTCTGGTCGTGATTGCC 58.795 52.381 0.00 0.00 0.00 4.52
4365 5205 1.078759 GTCTGGTCGTGATTGCCGAG 61.079 60.000 0.00 0.00 34.56 4.63
4371 5211 2.387445 CGTGATTGCCGAGCCGAAA 61.387 57.895 0.00 0.00 0.00 3.46
4373 5213 1.019278 GTGATTGCCGAGCCGAAAGA 61.019 55.000 0.00 0.00 0.00 2.52
4374 5214 0.107703 TGATTGCCGAGCCGAAAGAT 60.108 50.000 0.00 0.00 0.00 2.40
4383 5225 2.286067 CGAGCCGAAAGATTCATGCTTC 60.286 50.000 5.83 0.00 37.49 3.86
4391 5233 6.144854 CGAAAGATTCATGCTTCAGAACAAA 58.855 36.000 0.00 0.00 0.00 2.83
4392 5234 6.087291 CGAAAGATTCATGCTTCAGAACAAAC 59.913 38.462 0.00 0.00 0.00 2.93
4394 5236 6.585695 AGATTCATGCTTCAGAACAAACAT 57.414 33.333 0.00 0.00 0.00 2.71
4395 5237 6.387465 AGATTCATGCTTCAGAACAAACATG 58.613 36.000 0.00 0.00 36.97 3.21
4396 5238 5.518848 TTCATGCTTCAGAACAAACATGT 57.481 34.783 0.00 0.00 36.96 3.21
4399 5241 4.979943 TGCTTCAGAACAAACATGTCAA 57.020 36.364 0.00 0.00 0.00 3.18
4400 5242 4.923893 TGCTTCAGAACAAACATGTCAAG 58.076 39.130 0.00 0.00 0.00 3.02
4401 5243 3.732721 GCTTCAGAACAAACATGTCAAGC 59.267 43.478 0.00 0.00 0.00 4.01
4402 5244 4.734402 GCTTCAGAACAAACATGTCAAGCA 60.734 41.667 0.00 0.00 35.01 3.91
4403 5245 4.556942 TCAGAACAAACATGTCAAGCAG 57.443 40.909 0.00 0.00 0.00 4.24
4404 5246 3.316029 TCAGAACAAACATGTCAAGCAGG 59.684 43.478 0.00 0.00 34.63 4.85
4432 5274 8.244113 ACTGAATTTAATCTAAAAAGAAGGGCG 58.756 33.333 0.00 0.00 0.00 6.13
4436 5278 7.611213 TTTAATCTAAAAAGAAGGGCGAGAG 57.389 36.000 0.00 0.00 0.00 3.20
4474 5316 4.153986 CGAAGAGCAAAGCACATGTAAAG 58.846 43.478 0.00 0.00 0.00 1.85
4475 5317 4.479619 GAAGAGCAAAGCACATGTAAAGG 58.520 43.478 0.00 0.00 0.00 3.11
4481 5323 4.622740 GCAAAGCACATGTAAAGGCTAAAG 59.377 41.667 8.66 4.03 35.11 1.85
4482 5324 4.440839 AAGCACATGTAAAGGCTAAAGC 57.559 40.909 8.66 0.00 35.11 3.51
4483 5325 3.690460 AGCACATGTAAAGGCTAAAGCT 58.310 40.909 6.62 0.69 41.70 3.74
4484 5326 4.843728 AGCACATGTAAAGGCTAAAGCTA 58.156 39.130 6.62 0.00 41.70 3.32
4485 5327 5.440610 AGCACATGTAAAGGCTAAAGCTAT 58.559 37.500 6.62 0.00 41.70 2.97
4486 5328 5.297776 AGCACATGTAAAGGCTAAAGCTATG 59.702 40.000 6.62 0.00 41.70 2.23
4489 5331 5.590259 ACATGTAAAGGCTAAAGCTATGGTG 59.410 40.000 0.00 0.00 41.70 4.17
4490 5332 3.945285 TGTAAAGGCTAAAGCTATGGTGC 59.055 43.478 1.39 0.00 41.70 5.01
4491 5333 2.806945 AAGGCTAAAGCTATGGTGCA 57.193 45.000 1.39 0.00 41.70 4.57
4492 5334 3.303351 AAGGCTAAAGCTATGGTGCAT 57.697 42.857 1.39 0.00 41.70 3.96
4494 5336 3.635591 AGGCTAAAGCTATGGTGCATTT 58.364 40.909 1.39 0.00 41.70 2.32
4495 5337 3.382546 AGGCTAAAGCTATGGTGCATTTG 59.617 43.478 1.39 0.00 41.70 2.32
4497 5339 4.354587 GCTAAAGCTATGGTGCATTTGTC 58.645 43.478 0.00 0.00 38.21 3.18
4499 5341 4.708726 AAAGCTATGGTGCATTTGTCTC 57.291 40.909 0.00 0.00 34.99 3.36
4500 5342 3.641434 AGCTATGGTGCATTTGTCTCT 57.359 42.857 0.00 0.00 34.99 3.10
4501 5343 3.960571 AGCTATGGTGCATTTGTCTCTT 58.039 40.909 0.00 0.00 34.99 2.85
4504 5346 5.355350 AGCTATGGTGCATTTGTCTCTTAAC 59.645 40.000 0.00 0.00 34.99 2.01
4505 5347 5.123820 GCTATGGTGCATTTGTCTCTTAACA 59.876 40.000 0.00 0.00 0.00 2.41
4537 5404 3.322254 AGCTACGAATATCCCTTCTGTGG 59.678 47.826 0.00 0.00 0.00 4.17
4538 5405 2.622064 ACGAATATCCCTTCTGTGGC 57.378 50.000 0.00 0.00 0.00 5.01
4539 5406 2.119495 ACGAATATCCCTTCTGTGGCT 58.881 47.619 0.00 0.00 0.00 4.75
4540 5407 2.505819 ACGAATATCCCTTCTGTGGCTT 59.494 45.455 0.00 0.00 0.00 4.35
4541 5408 2.874701 CGAATATCCCTTCTGTGGCTTG 59.125 50.000 0.00 0.00 0.00 4.01
4544 5411 2.789409 ATCCCTTCTGTGGCTTGTAC 57.211 50.000 0.00 0.00 0.00 2.90
4545 5412 0.320374 TCCCTTCTGTGGCTTGTACG 59.680 55.000 0.00 0.00 0.00 3.67
4546 5413 0.034896 CCCTTCTGTGGCTTGTACGT 59.965 55.000 0.00 0.00 0.00 3.57
4548 5415 2.607187 CCTTCTGTGGCTTGTACGTAG 58.393 52.381 0.00 0.00 0.00 3.51
4549 5416 2.230508 CCTTCTGTGGCTTGTACGTAGA 59.769 50.000 0.00 0.00 0.00 2.59
4550 5417 3.119101 CCTTCTGTGGCTTGTACGTAGAT 60.119 47.826 0.00 0.00 0.00 1.98
4551 5418 4.097437 CCTTCTGTGGCTTGTACGTAGATA 59.903 45.833 0.00 0.00 0.00 1.98
4553 5420 3.379372 TCTGTGGCTTGTACGTAGATACC 59.621 47.826 0.00 0.00 0.00 2.73
4554 5421 2.097954 TGTGGCTTGTACGTAGATACCG 59.902 50.000 0.00 0.00 0.00 4.02
4555 5422 2.098117 GTGGCTTGTACGTAGATACCGT 59.902 50.000 0.00 0.00 42.06 4.83
4556 5423 2.355756 TGGCTTGTACGTAGATACCGTC 59.644 50.000 0.00 0.00 39.60 4.79
4557 5424 2.600792 GGCTTGTACGTAGATACCGTCG 60.601 54.545 0.00 0.00 39.60 5.12
4558 5425 2.285220 GCTTGTACGTAGATACCGTCGA 59.715 50.000 0.00 0.00 39.60 4.20
4559 5426 3.603401 GCTTGTACGTAGATACCGTCGAG 60.603 52.174 0.00 0.00 39.60 4.04
4560 5427 3.165058 TGTACGTAGATACCGTCGAGT 57.835 47.619 0.00 0.00 39.60 4.18
4562 5429 3.551890 TGTACGTAGATACCGTCGAGTTC 59.448 47.826 0.00 0.00 39.60 3.01
4563 5430 2.621338 ACGTAGATACCGTCGAGTTCA 58.379 47.619 0.00 0.00 31.97 3.18
4565 5432 3.247173 ACGTAGATACCGTCGAGTTCATC 59.753 47.826 0.00 0.00 31.97 2.92
4569 5449 0.454600 TACCGTCGAGTTCATCTGGC 59.545 55.000 0.00 0.00 0.00 4.85
4578 6688 2.069273 AGTTCATCTGGCGAAAGAACG 58.931 47.619 15.06 0.00 40.36 3.95
4580 6690 1.996292 TCATCTGGCGAAAGAACGAG 58.004 50.000 0.00 0.00 35.09 4.18
4588 6698 3.607370 GAAAGAACGAGGGGCGCCT 62.607 63.158 28.56 24.42 46.04 5.52
4589 6699 3.607370 AAAGAACGAGGGGCGCCTC 62.607 63.158 34.11 34.11 46.04 4.70
4592 6702 4.394712 AACGAGGGGCGCCTCTTG 62.395 66.667 37.52 37.52 46.04 3.02
4595 6705 4.847444 GAGGGGCGCCTCTTGCTC 62.847 72.222 35.81 14.85 38.05 4.26
4597 6707 3.470888 GGGGCGCCTCTTGCTCTA 61.471 66.667 28.56 0.00 38.05 2.43
4598 6708 2.812619 GGGGCGCCTCTTGCTCTAT 61.813 63.158 28.56 0.00 38.05 1.98
4599 6709 1.301322 GGGCGCCTCTTGCTCTATC 60.301 63.158 28.56 0.00 38.05 2.08
4600 6710 1.745264 GGCGCCTCTTGCTCTATCT 59.255 57.895 22.15 0.00 38.05 1.98
4601 6711 0.962489 GGCGCCTCTTGCTCTATCTA 59.038 55.000 22.15 0.00 38.05 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.236147 CGAAGCCATGATGATGAGTCTAG 58.764 47.826 0.00 0.00 0.00 2.43
42 43 1.068417 TCCGTGCAACACTTAGCGT 59.932 52.632 0.00 0.00 35.74 5.07
48 49 1.536766 CATTCATGTCCGTGCAACACT 59.463 47.619 0.00 0.00 35.74 3.55
54 55 2.282701 AAATGCATTCATGTCCGTGC 57.717 45.000 13.38 0.21 38.05 5.34
118 122 7.938563 TGGAGTTATTTTTGGAAAACATTCG 57.061 32.000 0.00 0.00 0.00 3.34
177 181 9.775854 AATTATCTAGTTTCCATCAGTGATCTG 57.224 33.333 1.56 0.00 42.54 2.90
229 502 7.582667 ACTTAAGTTAGTGGCTCAAACATTT 57.417 32.000 1.12 0.00 0.00 2.32
230 503 8.863872 ATACTTAAGTTAGTGGCTCAAACATT 57.136 30.769 14.49 0.00 0.00 2.71
235 508 8.265055 AGCAATATACTTAAGTTAGTGGCTCAA 58.735 33.333 14.49 0.00 0.00 3.02
277 620 6.666113 TGATCCTACTGGTAAATGTGTCTACA 59.334 38.462 0.00 0.00 36.52 2.74
288 648 2.829720 AGTGCGTTGATCCTACTGGTAA 59.170 45.455 0.00 0.00 34.23 2.85
292 652 4.371855 TTCTAGTGCGTTGATCCTACTG 57.628 45.455 0.00 0.00 0.00 2.74
299 659 7.931407 TGATGGTTATTATTCTAGTGCGTTGAT 59.069 33.333 0.00 0.00 0.00 2.57
300 660 7.269316 TGATGGTTATTATTCTAGTGCGTTGA 58.731 34.615 0.00 0.00 0.00 3.18
305 665 8.598924 CATCGATGATGGTTATTATTCTAGTGC 58.401 37.037 21.02 0.00 36.51 4.40
361 721 1.218875 CCGCGCTTGTGTGTCTGTAA 61.219 55.000 5.56 0.00 0.00 2.41
363 723 2.967076 CCGCGCTTGTGTGTCTGT 60.967 61.111 5.56 0.00 0.00 3.41
410 770 5.808540 CGGATTCGGTCAGTGTTTATCTTTA 59.191 40.000 0.00 0.00 0.00 1.85
411 771 4.630069 CGGATTCGGTCAGTGTTTATCTTT 59.370 41.667 0.00 0.00 0.00 2.52
416 776 2.669113 CGTCGGATTCGGTCAGTGTTTA 60.669 50.000 0.00 0.00 36.95 2.01
419 779 1.211969 CGTCGGATTCGGTCAGTGT 59.788 57.895 0.00 0.00 36.95 3.55
422 782 0.663688 ATCTCGTCGGATTCGGTCAG 59.336 55.000 0.00 0.00 36.95 3.51
423 783 0.380733 CATCTCGTCGGATTCGGTCA 59.619 55.000 0.00 0.00 36.95 4.02
429 1000 3.535561 AGAATTTGCATCTCGTCGGATT 58.464 40.909 0.00 0.00 0.00 3.01
452 1023 2.039746 ACGGTTTGGAGGTGATGATTCA 59.960 45.455 0.00 0.00 0.00 2.57
475 1057 3.207778 CCGAACTCTCTACGATCTCCTT 58.792 50.000 0.00 0.00 0.00 3.36
533 1126 2.073220 CCTCGTGACACGTTCGTCG 61.073 63.158 26.01 9.70 43.14 5.12
704 1300 1.103803 TTTGCGTTGGCCAAGTACAA 58.896 45.000 21.21 19.77 38.85 2.41
743 1340 2.656069 CGGCGAAGGAAGGAAGGGA 61.656 63.158 0.00 0.00 0.00 4.20
744 1341 2.125106 CGGCGAAGGAAGGAAGGG 60.125 66.667 0.00 0.00 0.00 3.95
773 1371 2.286885 GGGATGGGGGAAGGTGGA 60.287 66.667 0.00 0.00 0.00 4.02
779 1377 2.370963 GGATGGGGGATGGGGGAA 60.371 66.667 0.00 0.00 0.00 3.97
780 1378 4.918360 CGGATGGGGGATGGGGGA 62.918 72.222 0.00 0.00 0.00 4.81
786 1384 4.880426 AGACGGCGGATGGGGGAT 62.880 66.667 13.24 0.00 0.00 3.85
867 1488 3.373565 CTTTTGCGGAGGGTGGGC 61.374 66.667 0.00 0.00 0.00 5.36
940 1572 2.305127 CGGTTTCTTTCGGTCGCGT 61.305 57.895 5.77 0.00 0.00 6.01
944 1576 1.711206 CCTCTCGGTTTCTTTCGGTC 58.289 55.000 0.00 0.00 0.00 4.79
1190 1826 1.079127 ACAAGGGCGTCGGATCAAG 60.079 57.895 0.00 0.00 0.00 3.02
1207 1846 1.816074 TAGGACAAATTGCCACGGAC 58.184 50.000 8.65 0.00 0.00 4.79
1211 1850 6.630071 ACAATACAATAGGACAAATTGCCAC 58.370 36.000 8.65 0.00 37.77 5.01
1213 1852 9.248291 CATTACAATACAATAGGACAAATTGCC 57.752 33.333 0.00 0.00 37.77 4.52
1327 1992 3.133003 ACGACATCTGCCAGCTTAGTAAT 59.867 43.478 0.00 0.00 0.00 1.89
1415 2080 9.649167 GGAAAGAAGAATGATGTGATTTTCATT 57.351 29.630 0.00 0.00 43.42 2.57
1429 2094 9.745880 CAATTTGATCCATAGGAAAGAAGAATG 57.254 33.333 0.00 0.00 34.34 2.67
1434 2099 6.380846 CACCCAATTTGATCCATAGGAAAGAA 59.619 38.462 0.00 0.00 34.34 2.52
1436 2101 5.893255 TCACCCAATTTGATCCATAGGAAAG 59.107 40.000 0.00 0.00 34.34 2.62
1450 2115 7.595819 TTGTTCTTAATCTGTCACCCAATTT 57.404 32.000 0.00 0.00 0.00 1.82
1486 2162 3.963428 AATCTAGGCTTGTTCAGTCGT 57.037 42.857 0.00 0.00 29.34 4.34
1487 2163 5.168569 TGTTAATCTAGGCTTGTTCAGTCG 58.831 41.667 0.00 0.00 29.34 4.18
1514 2194 8.907222 ACTTGTTTAATCAGCCAATTTGATTT 57.093 26.923 8.70 0.00 41.25 2.17
1519 2199 8.635765 TCTAGACTTGTTTAATCAGCCAATTT 57.364 30.769 0.00 0.00 0.00 1.82
1557 2241 6.267928 ACATAGGCTACCGATACAGAGATTTT 59.732 38.462 0.00 0.00 0.00 1.82
1558 2242 5.775701 ACATAGGCTACCGATACAGAGATTT 59.224 40.000 0.00 0.00 0.00 2.17
1561 2245 4.368565 ACATAGGCTACCGATACAGAGA 57.631 45.455 0.00 0.00 0.00 3.10
1562 2246 5.880887 TGATACATAGGCTACCGATACAGAG 59.119 44.000 0.00 0.00 0.00 3.35
1564 2248 6.095580 ACATGATACATAGGCTACCGATACAG 59.904 42.308 0.00 0.00 0.00 2.74
1565 2249 5.949952 ACATGATACATAGGCTACCGATACA 59.050 40.000 0.00 0.00 0.00 2.29
1568 2252 4.382040 GCACATGATACATAGGCTACCGAT 60.382 45.833 0.00 0.00 0.00 4.18
1569 2253 3.056821 GCACATGATACATAGGCTACCGA 60.057 47.826 0.00 0.00 0.00 4.69
1574 2296 2.551721 GCAGGCACATGATACATAGGCT 60.552 50.000 0.00 0.00 0.00 4.58
1606 2328 9.878599 CACAATCCAACAAAGTAAAGTAAGTAG 57.121 33.333 0.00 0.00 0.00 2.57
1607 2329 9.616156 TCACAATCCAACAAAGTAAAGTAAGTA 57.384 29.630 0.00 0.00 0.00 2.24
1609 2331 8.402472 TGTCACAATCCAACAAAGTAAAGTAAG 58.598 33.333 0.00 0.00 0.00 2.34
1611 2333 7.012894 CCTGTCACAATCCAACAAAGTAAAGTA 59.987 37.037 0.00 0.00 0.00 2.24
1612 2334 6.183360 CCTGTCACAATCCAACAAAGTAAAGT 60.183 38.462 0.00 0.00 0.00 2.66
1613 2335 6.183360 ACCTGTCACAATCCAACAAAGTAAAG 60.183 38.462 0.00 0.00 0.00 1.85
1614 2336 5.654650 ACCTGTCACAATCCAACAAAGTAAA 59.345 36.000 0.00 0.00 0.00 2.01
1615 2337 5.197451 ACCTGTCACAATCCAACAAAGTAA 58.803 37.500 0.00 0.00 0.00 2.24
1616 2338 4.787551 ACCTGTCACAATCCAACAAAGTA 58.212 39.130 0.00 0.00 0.00 2.24
1617 2339 3.631250 ACCTGTCACAATCCAACAAAGT 58.369 40.909 0.00 0.00 0.00 2.66
1618 2340 5.049405 GTCTACCTGTCACAATCCAACAAAG 60.049 44.000 0.00 0.00 0.00 2.77
1647 2372 5.548406 AGGTCAAACAGTACATCTACCAAC 58.452 41.667 0.00 0.00 0.00 3.77
1650 2375 6.038997 AGAAGGTCAAACAGTACATCTACC 57.961 41.667 0.00 0.00 0.00 3.18
1659 2384 7.996644 TGGATTTAAGTTAGAAGGTCAAACAGT 59.003 33.333 0.00 0.00 0.00 3.55
1660 2385 8.391075 TGGATTTAAGTTAGAAGGTCAAACAG 57.609 34.615 0.00 0.00 0.00 3.16
1677 2402 9.416284 GGACTAATTACCCTGAAATGGATTTAA 57.584 33.333 0.00 0.00 0.00 1.52
1678 2403 8.002459 GGGACTAATTACCCTGAAATGGATTTA 58.998 37.037 4.25 0.00 42.56 1.40
1685 2410 6.062095 CGAATGGGACTAATTACCCTGAAAT 58.938 40.000 11.43 0.00 45.74 2.17
1692 2417 5.644636 TGTTGAACGAATGGGACTAATTACC 59.355 40.000 0.00 0.00 0.00 2.85
1699 2424 3.338249 CTGATGTTGAACGAATGGGACT 58.662 45.455 0.00 0.00 0.00 3.85
1700 2425 2.420022 CCTGATGTTGAACGAATGGGAC 59.580 50.000 0.00 0.00 0.00 4.46
1747 2473 5.968254 TCGGAACACTACTGTATTAATGCA 58.032 37.500 6.07 6.07 0.00 3.96
1754 2480 5.411977 CCTATCGATCGGAACACTACTGTAT 59.588 44.000 16.41 0.00 0.00 2.29
1770 2496 3.904339 AGCAGTAACCAATCCCTATCGAT 59.096 43.478 2.16 2.16 0.00 3.59
1775 2501 4.037222 TGATGAGCAGTAACCAATCCCTA 58.963 43.478 0.00 0.00 0.00 3.53
1809 2535 7.125792 TGGAGGGAGTAGATAAGAAATTCAC 57.874 40.000 0.00 0.00 0.00 3.18
1824 2550 7.344352 GCTCTTATATTATGAGATGGAGGGAGT 59.656 40.741 0.00 0.00 33.20 3.85
1825 2551 7.344093 TGCTCTTATATTATGAGATGGAGGGAG 59.656 40.741 0.00 0.00 33.20 4.30
1826 2552 7.191918 TGCTCTTATATTATGAGATGGAGGGA 58.808 38.462 0.00 0.00 33.20 4.20
1827 2553 7.429374 TGCTCTTATATTATGAGATGGAGGG 57.571 40.000 0.00 0.00 33.20 4.30
1828 2554 9.902684 AAATGCTCTTATATTATGAGATGGAGG 57.097 33.333 0.00 0.00 33.20 4.30
1841 2567 9.672673 AGTGTAGTGTCAAAAATGCTCTTATAT 57.327 29.630 0.00 0.00 0.00 0.86
1843 2569 7.986085 AGTGTAGTGTCAAAAATGCTCTTAT 57.014 32.000 0.00 0.00 0.00 1.73
1844 2570 8.148351 ACTAGTGTAGTGTCAAAAATGCTCTTA 58.852 33.333 0.00 0.00 37.69 2.10
1845 2571 6.992715 ACTAGTGTAGTGTCAAAAATGCTCTT 59.007 34.615 0.00 0.00 37.69 2.85
1846 2572 6.525629 ACTAGTGTAGTGTCAAAAATGCTCT 58.474 36.000 0.00 0.00 37.69 4.09
1847 2573 6.787085 ACTAGTGTAGTGTCAAAAATGCTC 57.213 37.500 0.00 0.00 37.69 4.26
1860 2586 3.568853 AGCGTTCTTGACACTAGTGTAGT 59.431 43.478 27.98 6.32 45.05 2.73
1861 2587 4.083217 AGAGCGTTCTTGACACTAGTGTAG 60.083 45.833 27.98 21.64 45.05 2.74
1862 2588 3.819337 AGAGCGTTCTTGACACTAGTGTA 59.181 43.478 27.98 13.12 45.05 2.90
1863 2589 3.068307 AAGAGCGTTCTTGACACTAGTGT 59.932 43.478 28.27 28.27 42.04 3.55
1864 2590 3.290308 AGAGCGTTCTTGACACTAGTG 57.710 47.619 21.44 21.44 0.00 2.74
1865 2591 5.646577 ATAAGAGCGTTCTTGACACTAGT 57.353 39.130 22.97 0.00 43.41 2.57
1866 2592 7.418408 TGATATAAGAGCGTTCTTGACACTAG 58.582 38.462 22.97 0.00 43.41 2.57
1867 2593 7.329588 TGATATAAGAGCGTTCTTGACACTA 57.670 36.000 22.97 3.67 43.41 2.74
1868 2594 6.208988 TGATATAAGAGCGTTCTTGACACT 57.791 37.500 22.97 4.75 43.41 3.55
1869 2595 6.074088 CCATGATATAAGAGCGTTCTTGACAC 60.074 42.308 22.97 12.62 43.41 3.67
1870 2596 5.985530 CCATGATATAAGAGCGTTCTTGACA 59.014 40.000 22.97 16.32 43.41 3.58
1871 2597 5.406780 CCCATGATATAAGAGCGTTCTTGAC 59.593 44.000 22.97 12.02 43.41 3.18
1872 2598 5.304357 TCCCATGATATAAGAGCGTTCTTGA 59.696 40.000 22.97 11.99 43.41 3.02
1873 2599 5.406780 GTCCCATGATATAAGAGCGTTCTTG 59.593 44.000 22.97 6.36 43.41 3.02
1874 2600 5.542779 GTCCCATGATATAAGAGCGTTCTT 58.457 41.667 18.78 18.78 45.45 2.52
1875 2601 4.321304 CGTCCCATGATATAAGAGCGTTCT 60.321 45.833 0.00 0.00 34.29 3.01
1876 2602 3.921021 CGTCCCATGATATAAGAGCGTTC 59.079 47.826 0.00 0.00 0.00 3.95
1877 2603 3.306088 CCGTCCCATGATATAAGAGCGTT 60.306 47.826 0.00 0.00 0.00 4.84
1878 2604 2.231478 CCGTCCCATGATATAAGAGCGT 59.769 50.000 0.00 0.00 0.00 5.07
1879 2605 2.492088 TCCGTCCCATGATATAAGAGCG 59.508 50.000 0.00 0.00 0.00 5.03
1880 2606 3.118956 CCTCCGTCCCATGATATAAGAGC 60.119 52.174 0.00 0.00 0.00 4.09
1881 2607 3.449018 CCCTCCGTCCCATGATATAAGAG 59.551 52.174 0.00 0.00 0.00 2.85
1882 2608 3.076937 TCCCTCCGTCCCATGATATAAGA 59.923 47.826 0.00 0.00 0.00 2.10
1883 2609 3.441101 TCCCTCCGTCCCATGATATAAG 58.559 50.000 0.00 0.00 0.00 1.73
1884 2610 3.441101 CTCCCTCCGTCCCATGATATAA 58.559 50.000 0.00 0.00 0.00 0.98
1885 2611 2.292257 CCTCCCTCCGTCCCATGATATA 60.292 54.545 0.00 0.00 0.00 0.86
1886 2612 1.553417 CCTCCCTCCGTCCCATGATAT 60.553 57.143 0.00 0.00 0.00 1.63
1887 2613 0.178932 CCTCCCTCCGTCCCATGATA 60.179 60.000 0.00 0.00 0.00 2.15
1888 2614 1.460305 CCTCCCTCCGTCCCATGAT 60.460 63.158 0.00 0.00 0.00 2.45
1889 2615 2.041922 CCTCCCTCCGTCCCATGA 60.042 66.667 0.00 0.00 0.00 3.07
1890 2616 1.689233 TTCCTCCCTCCGTCCCATG 60.689 63.158 0.00 0.00 0.00 3.66
1891 2617 1.383248 CTTCCTCCCTCCGTCCCAT 60.383 63.158 0.00 0.00 0.00 4.00
1892 2618 2.038975 CTTCCTCCCTCCGTCCCA 59.961 66.667 0.00 0.00 0.00 4.37
1893 2619 3.471806 GCTTCCTCCCTCCGTCCC 61.472 72.222 0.00 0.00 0.00 4.46
1894 2620 3.471806 GGCTTCCTCCCTCCGTCC 61.472 72.222 0.00 0.00 0.00 4.79
1895 2621 2.364448 AGGCTTCCTCCCTCCGTC 60.364 66.667 0.00 0.00 0.00 4.79
1896 2622 2.364448 GAGGCTTCCTCCCTCCGT 60.364 66.667 1.44 0.00 44.36 4.69
1904 2630 1.010170 AGGATGGGTTAGAGGCTTCCT 59.990 52.381 0.00 0.00 36.03 3.36
1905 2631 1.141858 CAGGATGGGTTAGAGGCTTCC 59.858 57.143 0.00 0.00 0.00 3.46
1906 2632 2.119495 TCAGGATGGGTTAGAGGCTTC 58.881 52.381 0.00 0.00 36.16 3.86
1924 2650 7.495901 TGCACCATCAAAATTAAACTTCTTCA 58.504 30.769 0.00 0.00 0.00 3.02
2007 2733 6.174720 AGGTCATCGAAGCAAGGATTATAA 57.825 37.500 0.00 0.00 0.00 0.98
2012 2738 1.833630 TGAGGTCATCGAAGCAAGGAT 59.166 47.619 0.00 0.00 0.00 3.24
2022 2749 3.118992 TCAGAGTGGAATTGAGGTCATCG 60.119 47.826 0.00 0.00 0.00 3.84
2025 2752 4.916041 AATCAGAGTGGAATTGAGGTCA 57.084 40.909 0.00 0.00 0.00 4.02
2090 2842 1.898472 CTCTGTCTCTCTGGCTCCAAA 59.102 52.381 0.00 0.00 0.00 3.28
2099 2851 3.356290 GAAGAAGAGCCTCTGTCTCTCT 58.644 50.000 0.00 0.00 39.81 3.10
2126 2878 2.379972 TCATCGTCCCTCTTCTCCTTC 58.620 52.381 0.00 0.00 0.00 3.46
2303 3055 5.084519 TCCTTCACCTTAGCAGAGAGTTTA 58.915 41.667 0.00 0.00 0.00 2.01
2306 3058 3.176924 TCCTTCACCTTAGCAGAGAGT 57.823 47.619 0.00 0.00 0.00 3.24
2377 3129 1.537889 TCCCTCCGTCCCACAATGT 60.538 57.895 0.00 0.00 0.00 2.71
2580 3333 0.827507 TCCTTTGTGCCCTTGCTTCC 60.828 55.000 0.00 0.00 38.71 3.46
2627 3380 7.056635 ACTCATGATTAATCAGGTTCGGAAAT 58.943 34.615 24.85 3.00 40.64 2.17
2674 3427 9.628746 AAATGTTTTAGTTTCTGTACGTGTTTT 57.371 25.926 0.00 0.00 0.00 2.43
2734 3487 2.111384 AGATCACGTCCTGGCTAATGT 58.889 47.619 0.00 0.00 0.00 2.71
2764 3517 5.357032 ACAGTCCTCTTCGTTTTGAACAATT 59.643 36.000 0.00 0.00 31.87 2.32
2765 3518 4.881850 ACAGTCCTCTTCGTTTTGAACAAT 59.118 37.500 0.00 0.00 31.87 2.71
2777 3530 9.860898 ATTAAAAATTATGCAACAGTCCTCTTC 57.139 29.630 0.00 0.00 0.00 2.87
2924 3677 4.164796 ACTGCCAGATTGGATCATTACAGA 59.835 41.667 0.00 0.00 40.96 3.41
2935 3688 6.698008 TTATAAATGTCACTGCCAGATTGG 57.302 37.500 0.00 0.00 41.55 3.16
2943 3696 7.652105 TCTTACCGAGATTATAAATGTCACTGC 59.348 37.037 0.00 0.00 0.00 4.40
3015 3784 6.374053 TGAAAGACTGATTCAACACAACAGAA 59.626 34.615 0.00 0.00 34.04 3.02
3095 3867 0.780637 TGGCCCTTAACCCACAATGA 59.219 50.000 0.00 0.00 0.00 2.57
3151 3923 8.081633 CCGTTATTACATAACCGGAGTAATGTA 58.918 37.037 23.41 19.25 41.55 2.29
3155 3927 6.321181 AGACCGTTATTACATAACCGGAGTAA 59.679 38.462 9.46 11.92 41.55 2.24
3163 3935 7.758528 AGACTGAACAGACCGTTATTACATAAC 59.241 37.037 8.87 0.00 38.19 1.89
3180 3952 4.127171 GGCTACAAACTTGAGACTGAACA 58.873 43.478 0.00 0.00 0.00 3.18
3299 4071 3.938963 TGAGTTTAGCAGCTAAATTCGGG 59.061 43.478 30.40 0.00 41.99 5.14
3353 4125 8.305046 TGAGAAAATAAACCCAAGGGATTATG 57.695 34.615 18.08 0.00 40.72 1.90
3363 4135 6.783708 ACACAACTTGAGAAAATAAACCCA 57.216 33.333 0.00 0.00 0.00 4.51
3451 4223 6.311445 CGATCTTATTCATCCAGGATAAACCG 59.689 42.308 0.00 0.00 44.74 4.44
3489 4261 8.237811 ACTTGAATTTTGGAAGTTACATCTGT 57.762 30.769 0.00 0.00 0.00 3.41
3520 4292 9.347240 CCTTGTGTATAATCTCCTCAATGAAAT 57.653 33.333 0.00 0.00 0.00 2.17
3521 4293 8.328758 ACCTTGTGTATAATCTCCTCAATGAAA 58.671 33.333 0.00 0.00 0.00 2.69
3522 4294 7.770433 CACCTTGTGTATAATCTCCTCAATGAA 59.230 37.037 0.00 0.00 0.00 2.57
3523 4295 7.092891 ACACCTTGTGTATAATCTCCTCAATGA 60.093 37.037 0.00 0.00 45.56 2.57
3524 4296 7.050377 ACACCTTGTGTATAATCTCCTCAATG 58.950 38.462 0.00 0.00 45.56 2.82
3525 4297 7.200434 ACACCTTGTGTATAATCTCCTCAAT 57.800 36.000 0.00 0.00 45.56 2.57
3526 4298 6.620877 ACACCTTGTGTATAATCTCCTCAA 57.379 37.500 0.00 0.00 45.56 3.02
3538 4310 5.126779 TCATTTTGCAGTACACCTTGTGTA 58.873 37.500 3.07 3.07 45.56 2.90
3540 4312 4.566545 TCATTTTGCAGTACACCTTGTG 57.433 40.909 0.00 0.00 39.75 3.33
3541 4313 5.789643 ATTCATTTTGCAGTACACCTTGT 57.210 34.783 0.00 0.00 0.00 3.16
3542 4314 8.028354 TCATTATTCATTTTGCAGTACACCTTG 58.972 33.333 0.00 0.00 0.00 3.61
3543 4315 8.028938 GTCATTATTCATTTTGCAGTACACCTT 58.971 33.333 0.00 0.00 0.00 3.50
3544 4316 7.176515 TGTCATTATTCATTTTGCAGTACACCT 59.823 33.333 0.00 0.00 0.00 4.00
3545 4317 7.273381 GTGTCATTATTCATTTTGCAGTACACC 59.727 37.037 0.00 0.00 0.00 4.16
3546 4318 8.023128 AGTGTCATTATTCATTTTGCAGTACAC 58.977 33.333 0.00 0.00 33.09 2.90
3547 4319 8.022550 CAGTGTCATTATTCATTTTGCAGTACA 58.977 33.333 0.00 0.00 0.00 2.90
3548 4320 7.485913 CCAGTGTCATTATTCATTTTGCAGTAC 59.514 37.037 0.00 0.00 0.00 2.73
3549 4321 7.362834 CCCAGTGTCATTATTCATTTTGCAGTA 60.363 37.037 0.00 0.00 0.00 2.74
3550 4322 6.392354 CCAGTGTCATTATTCATTTTGCAGT 58.608 36.000 0.00 0.00 0.00 4.40
3551 4323 5.808540 CCCAGTGTCATTATTCATTTTGCAG 59.191 40.000 0.00 0.00 0.00 4.41
3552 4324 5.722263 CCCAGTGTCATTATTCATTTTGCA 58.278 37.500 0.00 0.00 0.00 4.08
3553 4325 4.567959 GCCCAGTGTCATTATTCATTTTGC 59.432 41.667 0.00 0.00 0.00 3.68
3554 4326 5.111293 GGCCCAGTGTCATTATTCATTTTG 58.889 41.667 0.00 0.00 0.00 2.44
3555 4327 4.776837 TGGCCCAGTGTCATTATTCATTTT 59.223 37.500 0.00 0.00 0.00 1.82
3556 4328 4.352009 TGGCCCAGTGTCATTATTCATTT 58.648 39.130 0.00 0.00 0.00 2.32
3557 4329 3.979911 TGGCCCAGTGTCATTATTCATT 58.020 40.909 0.00 0.00 0.00 2.57
3558 4330 3.668141 TGGCCCAGTGTCATTATTCAT 57.332 42.857 0.00 0.00 0.00 2.57
3559 4331 3.088532 GTTGGCCCAGTGTCATTATTCA 58.911 45.455 0.00 0.00 0.00 2.57
3560 4332 3.088532 TGTTGGCCCAGTGTCATTATTC 58.911 45.455 0.00 0.00 0.00 1.75
3561 4333 2.825532 GTGTTGGCCCAGTGTCATTATT 59.174 45.455 0.00 0.00 0.00 1.40
3562 4334 2.224992 TGTGTTGGCCCAGTGTCATTAT 60.225 45.455 0.00 0.00 0.00 1.28
3563 4335 1.143889 TGTGTTGGCCCAGTGTCATTA 59.856 47.619 0.00 0.00 0.00 1.90
3564 4336 0.106268 TGTGTTGGCCCAGTGTCATT 60.106 50.000 0.00 0.00 0.00 2.57
3565 4337 0.106268 TTGTGTTGGCCCAGTGTCAT 60.106 50.000 0.00 0.00 0.00 3.06
3566 4338 0.106268 ATTGTGTTGGCCCAGTGTCA 60.106 50.000 0.00 0.00 0.00 3.58
3567 4339 1.039856 AATTGTGTTGGCCCAGTGTC 58.960 50.000 0.00 0.00 0.00 3.67
3568 4340 1.494960 AAATTGTGTTGGCCCAGTGT 58.505 45.000 0.00 0.00 0.00 3.55
3569 4341 2.158986 TCAAAATTGTGTTGGCCCAGTG 60.159 45.455 0.00 0.00 0.00 3.66
3570 4342 2.114616 TCAAAATTGTGTTGGCCCAGT 58.885 42.857 0.00 0.00 0.00 4.00
3571 4343 2.906691 TCAAAATTGTGTTGGCCCAG 57.093 45.000 0.00 0.00 0.00 4.45
3612 4437 9.911788 ACCAATATGTCTCTCAATTACTCATTT 57.088 29.630 0.00 0.00 0.00 2.32
3613 4438 9.553064 GACCAATATGTCTCTCAATTACTCATT 57.447 33.333 0.00 0.00 32.39 2.57
3616 4441 8.417106 TCTGACCAATATGTCTCTCAATTACTC 58.583 37.037 0.00 0.00 36.21 2.59
3617 4442 8.311395 TCTGACCAATATGTCTCTCAATTACT 57.689 34.615 0.00 0.00 36.21 2.24
3626 4465 7.229306 TGGCAAATTATCTGACCAATATGTCTC 59.771 37.037 0.00 0.00 36.21 3.36
3627 4466 7.062322 TGGCAAATTATCTGACCAATATGTCT 58.938 34.615 0.00 0.00 36.21 3.41
3640 4479 4.758773 CAACCCCATTGGCAAATTATCT 57.241 40.909 3.01 0.00 37.83 1.98
3758 4597 3.972403 GTTTGAACTAAAACCACGGCAT 58.028 40.909 0.00 0.00 34.58 4.40
3877 4717 1.244019 GCGCACCTGGGAGTTTCAAT 61.244 55.000 0.30 0.00 0.00 2.57
3955 4795 1.600957 CAGATTTGGCGCTATCACTGG 59.399 52.381 7.64 0.00 0.00 4.00
3986 4826 1.664306 GAACGTCTCCCACTCGGTT 59.336 57.895 0.00 0.00 0.00 4.44
4147 4987 3.480470 AGGCACCATACTTCATACATGC 58.520 45.455 0.00 0.00 0.00 4.06
4256 5096 3.716006 CACACGCCGTGCCAAGAG 61.716 66.667 18.59 0.00 39.19 2.85
4262 5102 4.675029 AGGTACCACACGCCGTGC 62.675 66.667 18.59 0.00 44.91 5.34
4265 5105 2.157305 TTACCAGGTACCACACGCCG 62.157 60.000 15.94 0.00 0.00 6.46
4268 5108 2.825861 AGTTTACCAGGTACCACACG 57.174 50.000 15.94 0.09 0.00 4.49
4270 5110 4.503643 GCAACTAGTTTACCAGGTACCACA 60.504 45.833 15.94 0.00 0.00 4.17
4288 5128 1.526917 GCTCACACACCTGGCAACT 60.527 57.895 0.00 0.00 37.61 3.16
4292 5132 0.321564 TACATGCTCACACACCTGGC 60.322 55.000 0.00 0.00 0.00 4.85
4293 5133 1.730501 CTACATGCTCACACACCTGG 58.269 55.000 0.00 0.00 0.00 4.45
4294 5134 1.081892 GCTACATGCTCACACACCTG 58.918 55.000 0.00 0.00 38.95 4.00
4295 5135 3.540211 GCTACATGCTCACACACCT 57.460 52.632 0.00 0.00 38.95 4.00
4305 5145 2.677836 TGATTCGTTTCCAGCTACATGC 59.322 45.455 0.00 0.00 43.29 4.06
4306 5146 4.033358 GTCTGATTCGTTTCCAGCTACATG 59.967 45.833 0.00 0.00 0.00 3.21
4307 5147 4.184629 GTCTGATTCGTTTCCAGCTACAT 58.815 43.478 0.00 0.00 0.00 2.29
4309 5149 2.599082 CGTCTGATTCGTTTCCAGCTAC 59.401 50.000 0.00 0.00 0.00 3.58
4310 5150 2.230508 ACGTCTGATTCGTTTCCAGCTA 59.769 45.455 0.00 0.00 38.38 3.32
4312 5152 1.429463 ACGTCTGATTCGTTTCCAGC 58.571 50.000 0.00 0.00 38.38 4.85
4314 5154 3.742369 GGTTAACGTCTGATTCGTTTCCA 59.258 43.478 10.64 0.00 46.90 3.53
4315 5155 3.992427 AGGTTAACGTCTGATTCGTTTCC 59.008 43.478 10.64 12.53 46.90 3.13
4317 5157 5.119743 GCTTAGGTTAACGTCTGATTCGTTT 59.880 40.000 10.64 0.00 46.90 3.60
4319 5159 4.171754 GCTTAGGTTAACGTCTGATTCGT 58.828 43.478 3.67 0.00 43.45 3.85
4321 5161 4.501071 TGGCTTAGGTTAACGTCTGATTC 58.499 43.478 3.67 0.00 0.00 2.52
4322 5162 4.546829 TGGCTTAGGTTAACGTCTGATT 57.453 40.909 3.67 0.00 0.00 2.57
4323 5163 4.755266 ATGGCTTAGGTTAACGTCTGAT 57.245 40.909 3.67 0.00 0.00 2.90
4326 5166 4.954826 AGACTATGGCTTAGGTTAACGTCT 59.045 41.667 3.67 2.21 31.68 4.18
4327 5167 5.041940 CAGACTATGGCTTAGGTTAACGTC 58.958 45.833 3.67 0.00 31.68 4.34
4328 5168 4.142004 CCAGACTATGGCTTAGGTTAACGT 60.142 45.833 11.60 6.03 43.83 3.99
4329 5169 4.369182 CCAGACTATGGCTTAGGTTAACG 58.631 47.826 11.60 0.00 43.83 3.18
4342 5182 2.205074 GGCAATCACGACCAGACTATG 58.795 52.381 0.00 0.00 0.00 2.23
4343 5183 1.202417 CGGCAATCACGACCAGACTAT 60.202 52.381 0.00 0.00 0.00 2.12
4344 5184 0.172578 CGGCAATCACGACCAGACTA 59.827 55.000 0.00 0.00 0.00 2.59
4345 5185 1.079819 CGGCAATCACGACCAGACT 60.080 57.895 0.00 0.00 0.00 3.24
4346 5186 1.078759 CTCGGCAATCACGACCAGAC 61.079 60.000 0.00 0.00 36.25 3.51
4347 5187 1.215382 CTCGGCAATCACGACCAGA 59.785 57.895 0.00 0.00 36.25 3.86
4348 5188 2.456119 GCTCGGCAATCACGACCAG 61.456 63.158 0.00 0.00 36.25 4.00
4349 5189 2.434185 GCTCGGCAATCACGACCA 60.434 61.111 0.00 0.00 36.25 4.02
4350 5190 3.195698 GGCTCGGCAATCACGACC 61.196 66.667 0.00 0.00 36.25 4.79
4351 5191 3.554692 CGGCTCGGCAATCACGAC 61.555 66.667 0.00 0.00 36.25 4.34
4352 5192 2.773397 TTTCGGCTCGGCAATCACGA 62.773 55.000 0.00 0.00 38.79 4.35
4353 5193 2.296692 CTTTCGGCTCGGCAATCACG 62.297 60.000 0.00 0.00 0.00 4.35
4354 5194 1.019278 TCTTTCGGCTCGGCAATCAC 61.019 55.000 0.00 0.00 0.00 3.06
4362 5202 1.293924 AGCATGAATCTTTCGGCTCG 58.706 50.000 0.00 0.00 38.13 5.03
4365 5205 2.679837 TCTGAAGCATGAATCTTTCGGC 59.320 45.455 0.00 0.00 34.13 5.54
4371 5211 6.015688 ACATGTTTGTTCTGAAGCATGAATCT 60.016 34.615 20.67 5.75 43.50 2.40
4373 5213 6.092955 ACATGTTTGTTCTGAAGCATGAAT 57.907 33.333 20.67 6.44 43.50 2.57
4374 5214 5.067544 TGACATGTTTGTTCTGAAGCATGAA 59.932 36.000 20.67 11.66 43.50 2.57
4383 5225 3.316029 TCCTGCTTGACATGTTTGTTCTG 59.684 43.478 0.00 0.00 35.79 3.02
4391 5233 2.936919 TCAGTTCCTGCTTGACATGT 57.063 45.000 0.00 0.00 0.00 3.21
4392 5234 4.778534 AATTCAGTTCCTGCTTGACATG 57.221 40.909 0.00 0.00 0.00 3.21
4394 5236 6.716628 AGATTAAATTCAGTTCCTGCTTGACA 59.283 34.615 0.00 0.00 0.00 3.58
4395 5237 7.150783 AGATTAAATTCAGTTCCTGCTTGAC 57.849 36.000 0.00 0.00 0.00 3.18
4396 5238 8.862325 TTAGATTAAATTCAGTTCCTGCTTGA 57.138 30.769 0.00 0.00 0.00 3.02
4410 5252 8.575649 TCTCGCCCTTCTTTTTAGATTAAATT 57.424 30.769 0.00 0.00 0.00 1.82
4421 5263 3.418684 TTAAGCTCTCGCCCTTCTTTT 57.581 42.857 0.00 0.00 36.60 2.27
4432 5274 4.177026 TCGCTCTGTCAATTTAAGCTCTC 58.823 43.478 0.00 0.00 0.00 3.20
4436 5278 4.726306 GCTCTTCGCTCTGTCAATTTAAGC 60.726 45.833 0.00 0.00 35.14 3.09
4439 5281 3.925379 TGCTCTTCGCTCTGTCAATTTA 58.075 40.909 0.00 0.00 40.11 1.40
4440 5282 2.771089 TGCTCTTCGCTCTGTCAATTT 58.229 42.857 0.00 0.00 40.11 1.82
4461 5303 4.082125 AGCTTTAGCCTTTACATGTGCTT 58.918 39.130 12.99 0.00 43.38 3.91
4465 5307 5.590259 CACCATAGCTTTAGCCTTTACATGT 59.410 40.000 2.69 2.69 43.38 3.21
4467 5309 4.580580 GCACCATAGCTTTAGCCTTTACAT 59.419 41.667 0.00 0.00 43.38 2.29
4474 5316 3.131046 ACAAATGCACCATAGCTTTAGCC 59.869 43.478 0.00 0.00 43.38 3.93
4475 5317 4.096984 AGACAAATGCACCATAGCTTTAGC 59.903 41.667 0.00 0.00 42.49 3.09
4481 5323 5.123820 TGTTAAGAGACAAATGCACCATAGC 59.876 40.000 0.00 0.00 0.00 2.97
4482 5324 6.741992 TGTTAAGAGACAAATGCACCATAG 57.258 37.500 0.00 0.00 0.00 2.23
4483 5325 7.517614 TTTGTTAAGAGACAAATGCACCATA 57.482 32.000 0.00 0.00 42.73 2.74
4484 5326 6.403866 TTTGTTAAGAGACAAATGCACCAT 57.596 33.333 0.00 0.00 42.73 3.55
4485 5327 5.843673 TTTGTTAAGAGACAAATGCACCA 57.156 34.783 0.00 0.00 42.73 4.17
4486 5328 6.978080 TCTTTTTGTTAAGAGACAAATGCACC 59.022 34.615 4.28 0.00 45.76 5.01
4489 5331 9.248291 TCAATCTTTTTGTTAAGAGACAAATGC 57.752 29.630 4.28 0.00 45.76 3.56
4491 5333 9.468532 GCTCAATCTTTTTGTTAAGAGACAAAT 57.531 29.630 4.28 0.00 45.76 2.32
4492 5334 8.686334 AGCTCAATCTTTTTGTTAAGAGACAAA 58.314 29.630 0.00 0.00 45.07 2.83
4494 5336 7.807977 AGCTCAATCTTTTTGTTAAGAGACA 57.192 32.000 0.00 0.00 37.55 3.41
4495 5337 7.952637 CGTAGCTCAATCTTTTTGTTAAGAGAC 59.047 37.037 0.00 0.00 37.55 3.36
4497 5339 8.018677 TCGTAGCTCAATCTTTTTGTTAAGAG 57.981 34.615 0.00 0.00 37.55 2.85
4504 5346 7.227512 AGGGATATTCGTAGCTCAATCTTTTTG 59.772 37.037 0.00 0.00 0.00 2.44
4505 5347 7.283329 AGGGATATTCGTAGCTCAATCTTTTT 58.717 34.615 0.00 0.00 0.00 1.94
4516 5383 3.654414 CCACAGAAGGGATATTCGTAGC 58.346 50.000 0.00 0.00 34.27 3.58
4537 5404 2.285220 TCGACGGTATCTACGTACAAGC 59.715 50.000 0.00 0.00 45.68 4.01
4538 5405 3.553511 ACTCGACGGTATCTACGTACAAG 59.446 47.826 0.00 0.00 45.68 3.16
4539 5406 3.521560 ACTCGACGGTATCTACGTACAA 58.478 45.455 0.00 0.00 45.68 2.41
4540 5407 3.165058 ACTCGACGGTATCTACGTACA 57.835 47.619 0.00 0.00 45.68 2.90
4541 5408 3.551890 TGAACTCGACGGTATCTACGTAC 59.448 47.826 0.00 0.00 45.68 3.67
4544 5411 3.493877 AGATGAACTCGACGGTATCTACG 59.506 47.826 0.00 0.00 37.36 3.51
4545 5412 4.319622 CCAGATGAACTCGACGGTATCTAC 60.320 50.000 0.00 0.00 0.00 2.59
4546 5413 3.813724 CCAGATGAACTCGACGGTATCTA 59.186 47.826 0.00 0.00 0.00 1.98
4548 5415 2.859032 GCCAGATGAACTCGACGGTATC 60.859 54.545 0.00 0.00 0.00 2.24
4549 5416 1.067212 GCCAGATGAACTCGACGGTAT 59.933 52.381 0.00 0.00 0.00 2.73
4550 5417 0.454600 GCCAGATGAACTCGACGGTA 59.545 55.000 0.00 0.00 0.00 4.02
4551 5418 1.215647 GCCAGATGAACTCGACGGT 59.784 57.895 0.00 0.00 0.00 4.83
4553 5420 0.456142 TTCGCCAGATGAACTCGACG 60.456 55.000 0.00 0.00 0.00 5.12
4554 5421 1.656095 CTTTCGCCAGATGAACTCGAC 59.344 52.381 0.00 0.00 0.00 4.20
4555 5422 1.544246 TCTTTCGCCAGATGAACTCGA 59.456 47.619 0.00 0.00 0.00 4.04
4556 5423 1.996292 TCTTTCGCCAGATGAACTCG 58.004 50.000 0.00 0.00 0.00 4.18
4557 5424 2.092838 CGTTCTTTCGCCAGATGAACTC 59.907 50.000 0.00 0.00 37.70 3.01
4558 5425 2.069273 CGTTCTTTCGCCAGATGAACT 58.931 47.619 0.00 0.00 37.70 3.01
4559 5426 2.066262 TCGTTCTTTCGCCAGATGAAC 58.934 47.619 0.00 0.00 37.12 3.18
4560 5427 2.337583 CTCGTTCTTTCGCCAGATGAA 58.662 47.619 0.00 0.00 0.00 2.57
4562 5429 1.002366 CCTCGTTCTTTCGCCAGATG 58.998 55.000 0.00 0.00 0.00 2.90
4563 5430 0.108138 CCCTCGTTCTTTCGCCAGAT 60.108 55.000 0.00 0.00 0.00 2.90
4565 5432 1.741770 CCCCTCGTTCTTTCGCCAG 60.742 63.158 0.00 0.00 0.00 4.85
4569 5449 3.488090 GCGCCCCTCGTTCTTTCG 61.488 66.667 0.00 0.00 41.07 3.46
4585 6695 5.998981 TGTAGTAGTAGATAGAGCAAGAGGC 59.001 44.000 0.00 0.00 45.30 4.70
4588 6698 8.265764 TCAGTTGTAGTAGTAGATAGAGCAAGA 58.734 37.037 0.00 0.00 0.00 3.02
4589 6699 8.439993 TCAGTTGTAGTAGTAGATAGAGCAAG 57.560 38.462 0.00 0.00 0.00 4.01
4590 6700 8.675504 GTTCAGTTGTAGTAGTAGATAGAGCAA 58.324 37.037 0.00 0.00 0.00 3.91
4592 6702 7.346695 CGTTCAGTTGTAGTAGTAGATAGAGC 58.653 42.308 0.00 0.00 0.00 4.09
4593 6703 7.495279 ACCGTTCAGTTGTAGTAGTAGATAGAG 59.505 40.741 0.00 0.00 0.00 2.43
4594 6704 7.279536 CACCGTTCAGTTGTAGTAGTAGATAGA 59.720 40.741 0.00 0.00 0.00 1.98
4595 6705 7.279536 TCACCGTTCAGTTGTAGTAGTAGATAG 59.720 40.741 0.00 0.00 0.00 2.08
4596 6706 7.105588 TCACCGTTCAGTTGTAGTAGTAGATA 58.894 38.462 0.00 0.00 0.00 1.98
4597 6707 5.942236 TCACCGTTCAGTTGTAGTAGTAGAT 59.058 40.000 0.00 0.00 0.00 1.98
4598 6708 5.308014 TCACCGTTCAGTTGTAGTAGTAGA 58.692 41.667 0.00 0.00 0.00 2.59
4599 6709 5.618056 TCACCGTTCAGTTGTAGTAGTAG 57.382 43.478 0.00 0.00 0.00 2.57
4600 6710 5.620654 GCATCACCGTTCAGTTGTAGTAGTA 60.621 44.000 0.00 0.00 0.00 1.82
4601 6711 4.806330 CATCACCGTTCAGTTGTAGTAGT 58.194 43.478 0.00 0.00 0.00 2.73
4695 6805 3.687102 TTCGATGTGTCCCGGCGT 61.687 61.111 6.01 0.00 0.00 5.68
4932 7042 3.941188 CTGCACACCCACGTCCCT 61.941 66.667 0.00 0.00 0.00 4.20
5059 7169 2.217038 TCCTCCACAAGCGCTCCTT 61.217 57.895 12.06 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.