Multiple sequence alignment - TraesCS3B01G377800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G377800 chr3B 100.000 3524 0 0 1 3524 595287584 595291107 0.000000e+00 6508
1 TraesCS3B01G377800 chr3B 100.000 84 0 0 3441 3524 785458983 785459066 4.710000e-34 156
2 TraesCS3B01G377800 chr3D 95.672 2911 107 6 1 2908 453096351 453099245 0.000000e+00 4660
3 TraesCS3B01G377800 chr3D 88.176 296 21 5 3153 3434 453099476 453099771 1.210000e-89 340
4 TraesCS3B01G377800 chr3A 94.969 2922 105 16 1 2910 595433926 595436817 0.000000e+00 4543
5 TraesCS3B01G377800 chr3A 92.334 287 14 4 3153 3434 595437048 595437331 5.480000e-108 401
6 TraesCS3B01G377800 chr2A 92.298 766 52 6 349 1109 279048893 279048130 0.000000e+00 1081
7 TraesCS3B01G377800 chr2A 100.000 86 0 0 3439 3524 36232692 36232777 3.640000e-35 159
8 TraesCS3B01G377800 chr6B 78.332 1343 273 16 989 2322 169318576 169317243 0.000000e+00 852
9 TraesCS3B01G377800 chr7A 100.000 87 0 0 3438 3524 448101163 448101077 1.010000e-35 161
10 TraesCS3B01G377800 chr7A 100.000 87 0 0 3438 3524 448101326 448101240 1.010000e-35 161
11 TraesCS3B01G377800 chr7A 95.238 84 4 0 3441 3524 138380791 138380708 2.210000e-27 134
12 TraesCS3B01G377800 chr7B 100.000 86 0 0 3439 3524 679494702 679494617 3.640000e-35 159
13 TraesCS3B01G377800 chr4D 100.000 84 0 0 3441 3524 211741945 211742028 4.710000e-34 156
14 TraesCS3B01G377800 chr6A 95.294 85 4 0 3440 3524 556981378 556981462 6.140000e-28 135
15 TraesCS3B01G377800 chr1D 93.407 91 6 0 3434 3524 399188002 399188092 6.140000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G377800 chr3B 595287584 595291107 3523 False 6508 6508 100.0000 1 3524 1 chr3B.!!$F1 3523
1 TraesCS3B01G377800 chr3D 453096351 453099771 3420 False 2500 4660 91.9240 1 3434 2 chr3D.!!$F1 3433
2 TraesCS3B01G377800 chr3A 595433926 595437331 3405 False 2472 4543 93.6515 1 3434 2 chr3A.!!$F1 3433
3 TraesCS3B01G377800 chr2A 279048130 279048893 763 True 1081 1081 92.2980 349 1109 1 chr2A.!!$R1 760
4 TraesCS3B01G377800 chr6B 169317243 169318576 1333 True 852 852 78.3320 989 2322 1 chr6B.!!$R1 1333

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 116 1.017387 GGATCTAGCCACAAAAGCCG 58.983 55.0 0.00 0.00 0.00 5.52 F
969 984 1.234821 ATAAGCGGTGTGTGGTGTTG 58.765 50.0 0.00 0.00 0.00 3.33 F
1910 1925 0.322277 ACAGGATGCAGCACTTCTGG 60.322 55.0 19.49 6.29 42.53 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1044 1059 1.631405 CTTGTCCCAATTGCTTCCCA 58.369 50.0 0.00 0.0 0.00 4.37 R
2467 2485 1.111277 GGTGGTTGTTCCTGCAAGTT 58.889 50.0 0.00 0.0 37.07 2.66 R
3484 3615 0.035439 CGGATGGTGGCCTGTAACTT 60.035 55.0 3.32 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 73 2.799917 GCCGGGCTATAATCATCGCTAG 60.800 54.545 12.87 0.00 0.00 3.42
72 76 3.243234 CGGGCTATAATCATCGCTAGGAG 60.243 52.174 0.00 0.00 0.00 3.69
110 114 2.293170 GAGGGATCTAGCCACAAAAGC 58.707 52.381 0.00 0.00 0.00 3.51
112 116 1.017387 GGATCTAGCCACAAAAGCCG 58.983 55.000 0.00 0.00 0.00 5.52
203 211 3.741476 GCTTGCAAGGCGGTCAGG 61.741 66.667 27.10 0.14 0.00 3.86
428 436 5.106673 GGAATGGTCGGTTTTTGAGTTAGAG 60.107 44.000 0.00 0.00 0.00 2.43
436 444 6.019318 TCGGTTTTTGAGTTAGAGTTTTCGAG 60.019 38.462 0.00 0.00 0.00 4.04
496 504 5.507985 GCTTCACCCAATTATCCAACTATGC 60.508 44.000 0.00 0.00 0.00 3.14
499 507 5.104151 TCACCCAATTATCCAACTATGCTGA 60.104 40.000 0.00 0.00 0.00 4.26
564 573 6.134535 AGTTTGATAGACAACATTGGGGTA 57.865 37.500 0.00 0.00 38.29 3.69
699 711 1.461127 GCTGACAGTTGTTGATCGGAC 59.539 52.381 3.99 0.00 0.00 4.79
706 718 1.725164 GTTGTTGATCGGACGAAGACC 59.275 52.381 0.00 0.00 39.42 3.85
830 842 2.416547 GTGCTGCATACTGGTACTGTTG 59.583 50.000 5.27 0.00 41.74 3.33
833 845 3.338249 CTGCATACTGGTACTGTTGCTT 58.662 45.455 17.32 0.00 41.10 3.91
845 857 2.224161 ACTGTTGCTTCTCTCTGTGGTC 60.224 50.000 0.00 0.00 0.00 4.02
969 984 1.234821 ATAAGCGGTGTGTGGTGTTG 58.765 50.000 0.00 0.00 0.00 3.33
1044 1059 4.277476 TCTTGATGGGCCGTTATGAAATT 58.723 39.130 0.00 0.00 0.00 1.82
1365 1380 4.646492 AGGTATTTCCACCAATTGATCAGC 59.354 41.667 7.12 0.00 41.40 4.26
1449 1464 4.592942 TCCTGGATGAGAATGAAAACCTG 58.407 43.478 0.00 0.00 0.00 4.00
1602 1617 1.475751 GCAGATGTATGGTCCAGTGGG 60.476 57.143 9.92 0.00 0.00 4.61
1613 1628 2.841881 GGTCCAGTGGGGTAATTCTGTA 59.158 50.000 9.92 0.00 38.11 2.74
1910 1925 0.322277 ACAGGATGCAGCACTTCTGG 60.322 55.000 19.49 6.29 42.53 3.86
1968 1986 6.602009 TGAATGCATTTGACATCATCTCTCTT 59.398 34.615 14.33 0.00 0.00 2.85
2235 2253 7.277174 AGTTGAGTTGAAAAAGACTAATGGG 57.723 36.000 0.00 0.00 0.00 4.00
2257 2275 4.995487 GGGACACTTTCGAGTATCAAAAGT 59.005 41.667 0.00 0.00 33.17 2.66
2379 2397 1.885388 CTCACCGTCGCCAACACAA 60.885 57.895 0.00 0.00 0.00 3.33
2403 2421 1.135603 CCACATGATGAGTTGCAACCG 60.136 52.381 25.62 8.38 0.00 4.44
2467 2485 1.071987 CAACCACAGGAGCAGCAGA 59.928 57.895 0.00 0.00 0.00 4.26
2530 2548 6.016213 TCAAACACCAAGATTGACATGATG 57.984 37.500 0.00 0.00 34.53 3.07
2560 2578 3.119743 CGGATGAAAGTACCTCGTGTGTA 60.120 47.826 0.00 0.00 0.00 2.90
2606 2624 7.650504 CCATACTCTTTGCAACCATGATTTATG 59.349 37.037 0.00 5.90 36.50 1.90
2785 2803 5.471456 AGCACCATCTAGTTCTTTGAGTTTG 59.529 40.000 0.00 0.00 0.00 2.93
2788 2806 7.571428 GCACCATCTAGTTCTTTGAGTTTGTAC 60.571 40.741 0.00 0.00 0.00 2.90
2791 2809 8.499162 CCATCTAGTTCTTTGAGTTTGTACTTG 58.501 37.037 0.00 0.00 33.84 3.16
2816 2834 6.084326 TGTAATTTGTTTTCCAAGGAGAGC 57.916 37.500 0.00 0.00 33.75 4.09
2825 2843 2.032620 TCCAAGGAGAGCGAACCTATC 58.967 52.381 0.00 0.00 35.25 2.08
2900 2918 2.418976 GGTTTGGAGGTATCGTGCTTTC 59.581 50.000 0.00 0.00 0.00 2.62
2901 2919 2.396590 TTGGAGGTATCGTGCTTTCC 57.603 50.000 0.00 0.00 0.00 3.13
2902 2920 1.568504 TGGAGGTATCGTGCTTTCCT 58.431 50.000 0.00 0.00 0.00 3.36
2910 2928 7.281549 GGAGGTATCGTGCTTTCCTAAAAATTA 59.718 37.037 0.00 0.00 0.00 1.40
2911 2929 7.982224 AGGTATCGTGCTTTCCTAAAAATTAC 58.018 34.615 0.00 0.00 0.00 1.89
2913 2931 7.908601 GGTATCGTGCTTTCCTAAAAATTACAG 59.091 37.037 0.00 0.00 0.00 2.74
2914 2932 7.681939 ATCGTGCTTTCCTAAAAATTACAGA 57.318 32.000 0.00 0.00 0.00 3.41
2916 2934 6.148811 TCGTGCTTTCCTAAAAATTACAGAGG 59.851 38.462 0.00 0.00 0.00 3.69
2917 2935 6.621613 GTGCTTTCCTAAAAATTACAGAGGG 58.378 40.000 0.00 0.00 0.00 4.30
2918 2936 6.433093 GTGCTTTCCTAAAAATTACAGAGGGA 59.567 38.462 0.00 0.00 0.00 4.20
2919 2937 6.659242 TGCTTTCCTAAAAATTACAGAGGGAG 59.341 38.462 0.00 0.00 0.00 4.30
2922 2940 9.163899 CTTTCCTAAAAATTACAGAGGGAGTAC 57.836 37.037 0.00 0.00 0.00 2.73
2923 2941 7.191593 TCCTAAAAATTACAGAGGGAGTACC 57.808 40.000 0.00 0.00 40.67 3.34
2938 2956 4.963628 GGGAGTACCTCTGAAGATTAAGGT 59.036 45.833 0.00 0.00 44.24 3.50
2939 2957 5.163395 GGGAGTACCTCTGAAGATTAAGGTG 60.163 48.000 3.21 0.00 42.08 4.00
2940 2958 5.346181 AGTACCTCTGAAGATTAAGGTGC 57.654 43.478 3.21 1.99 42.08 5.01
2941 2959 5.026790 AGTACCTCTGAAGATTAAGGTGCT 58.973 41.667 5.34 5.34 46.11 4.40
2942 2960 4.917906 ACCTCTGAAGATTAAGGTGCTT 57.082 40.909 0.00 0.00 40.59 3.91
2944 2962 6.374417 ACCTCTGAAGATTAAGGTGCTTTA 57.626 37.500 0.00 0.00 40.59 1.85
2946 2964 7.406104 ACCTCTGAAGATTAAGGTGCTTTATT 58.594 34.615 0.00 0.00 40.59 1.40
2951 2969 9.994432 CTGAAGATTAAGGTGCTTTATTAGTTG 57.006 33.333 0.00 0.00 0.00 3.16
2952 2970 8.956426 TGAAGATTAAGGTGCTTTATTAGTTGG 58.044 33.333 0.00 0.00 0.00 3.77
2953 2971 7.881775 AGATTAAGGTGCTTTATTAGTTGGG 57.118 36.000 0.00 0.00 0.00 4.12
2954 2972 6.833933 AGATTAAGGTGCTTTATTAGTTGGGG 59.166 38.462 0.00 0.00 0.00 4.96
2955 2973 4.397919 AAGGTGCTTTATTAGTTGGGGT 57.602 40.909 0.00 0.00 0.00 4.95
2959 3075 5.192923 AGGTGCTTTATTAGTTGGGGTGATA 59.807 40.000 0.00 0.00 0.00 2.15
2960 3076 5.889289 GGTGCTTTATTAGTTGGGGTGATAA 59.111 40.000 0.00 0.00 0.00 1.75
2965 3081 7.502561 GCTTTATTAGTTGGGGTGATAATGAGT 59.497 37.037 0.00 0.00 0.00 3.41
2967 3083 9.762381 TTTATTAGTTGGGGTGATAATGAGTTT 57.238 29.630 0.00 0.00 0.00 2.66
2968 3084 7.881775 ATTAGTTGGGGTGATAATGAGTTTC 57.118 36.000 0.00 0.00 0.00 2.78
2969 3085 5.255397 AGTTGGGGTGATAATGAGTTTCA 57.745 39.130 0.00 0.00 0.00 2.69
2972 3088 3.053693 TGGGGTGATAATGAGTTTCAGGG 60.054 47.826 0.00 0.00 0.00 4.45
2973 3089 3.555966 GGGTGATAATGAGTTTCAGGGG 58.444 50.000 0.00 0.00 0.00 4.79
2976 3092 4.325030 GGTGATAATGAGTTTCAGGGGGAA 60.325 45.833 0.00 0.00 0.00 3.97
2977 3093 5.449553 GTGATAATGAGTTTCAGGGGGAAT 58.550 41.667 0.00 0.00 34.91 3.01
2980 3096 6.389869 TGATAATGAGTTTCAGGGGGAATAGT 59.610 38.462 0.00 0.00 34.91 2.12
2982 3098 5.896073 ATGAGTTTCAGGGGGAATAGTAG 57.104 43.478 0.00 0.00 34.91 2.57
2986 3102 6.063496 AGTTTCAGGGGGAATAGTAGAAAC 57.937 41.667 0.00 0.00 41.99 2.78
2987 3103 5.045066 AGTTTCAGGGGGAATAGTAGAAACC 60.045 44.000 0.00 0.00 42.40 3.27
2996 3112 5.123979 GGGAATAGTAGAAACCTGTTTGCTG 59.876 44.000 0.00 0.00 32.11 4.41
2997 3113 5.705905 GGAATAGTAGAAACCTGTTTGCTGT 59.294 40.000 0.00 0.00 32.11 4.40
2998 3114 6.877322 GGAATAGTAGAAACCTGTTTGCTGTA 59.123 38.462 0.00 0.00 32.11 2.74
2999 3115 7.064728 GGAATAGTAGAAACCTGTTTGCTGTAG 59.935 40.741 0.00 0.00 32.11 2.74
3000 3116 4.642429 AGTAGAAACCTGTTTGCTGTAGG 58.358 43.478 0.00 0.00 37.61 3.18
3001 3117 3.857157 AGAAACCTGTTTGCTGTAGGA 57.143 42.857 0.00 0.00 35.55 2.94
3002 3118 3.744660 AGAAACCTGTTTGCTGTAGGAG 58.255 45.455 0.00 0.00 35.55 3.69
3003 3119 3.136626 AGAAACCTGTTTGCTGTAGGAGT 59.863 43.478 0.00 0.00 35.55 3.85
3007 3123 2.622436 CTGTTTGCTGTAGGAGTAGCC 58.378 52.381 0.00 0.00 39.15 3.93
3009 3125 1.067071 GTTTGCTGTAGGAGTAGCCGT 60.067 52.381 0.00 0.00 43.43 5.68
3010 3126 1.263356 TTGCTGTAGGAGTAGCCGTT 58.737 50.000 0.00 0.00 43.43 4.44
3012 3128 0.531200 GCTGTAGGAGTAGCCGTTGT 59.469 55.000 0.00 0.00 43.43 3.32
3013 3129 1.747355 GCTGTAGGAGTAGCCGTTGTA 59.253 52.381 0.00 0.00 43.43 2.41
3014 3130 2.479219 GCTGTAGGAGTAGCCGTTGTAC 60.479 54.545 0.00 0.00 43.43 2.90
3015 3131 2.094675 TGTAGGAGTAGCCGTTGTACC 58.905 52.381 0.00 0.00 43.43 3.34
3018 3134 0.457337 GGAGTAGCCGTTGTACCGTG 60.457 60.000 0.00 0.00 0.00 4.94
3019 3135 0.457337 GAGTAGCCGTTGTACCGTGG 60.457 60.000 0.00 0.00 0.00 4.94
3020 3136 1.446618 GTAGCCGTTGTACCGTGGG 60.447 63.158 0.00 0.00 0.00 4.61
3021 3137 3.299524 TAGCCGTTGTACCGTGGGC 62.300 63.158 6.29 6.29 44.07 5.36
3025 3141 2.940561 GTTGTACCGTGGGCGTTG 59.059 61.111 0.00 0.00 36.15 4.10
3026 3142 2.973600 TTGTACCGTGGGCGTTGC 60.974 61.111 0.00 0.00 36.15 4.17
3032 3148 3.732892 CGTGGGCGTTGCGGAAAT 61.733 61.111 0.00 0.00 0.00 2.17
3033 3149 2.126502 GTGGGCGTTGCGGAAATG 60.127 61.111 0.00 0.00 0.00 2.32
3042 3158 1.081509 TGCGGAAATGCAGAAACGC 60.082 52.632 17.94 17.94 46.34 4.84
3044 3160 1.067199 GCGGAAATGCAGAAACGCAG 61.067 55.000 19.28 0.00 46.99 5.18
3045 3161 1.067199 CGGAAATGCAGAAACGCAGC 61.067 55.000 0.00 0.00 46.99 5.25
3046 3162 0.039256 GGAAATGCAGAAACGCAGCA 60.039 50.000 0.00 0.00 46.99 4.41
3047 3163 1.334054 GAAATGCAGAAACGCAGCAG 58.666 50.000 0.00 0.00 46.99 4.24
3048 3164 0.670162 AAATGCAGAAACGCAGCAGT 59.330 45.000 0.00 0.00 46.99 4.40
3049 3165 0.670162 AATGCAGAAACGCAGCAGTT 59.330 45.000 0.00 0.00 46.99 3.16
3050 3166 0.239347 ATGCAGAAACGCAGCAGTTC 59.761 50.000 0.00 0.76 46.99 3.01
3051 3167 0.815213 TGCAGAAACGCAGCAGTTCT 60.815 50.000 2.32 2.32 36.86 3.01
3052 3168 0.308993 GCAGAAACGCAGCAGTTCTT 59.691 50.000 5.06 0.00 32.43 2.52
3053 3169 1.923316 GCAGAAACGCAGCAGTTCTTG 60.923 52.381 5.06 6.98 32.43 3.02
3054 3170 1.599071 CAGAAACGCAGCAGTTCTTGA 59.401 47.619 5.06 0.00 32.43 3.02
3055 3171 2.225019 CAGAAACGCAGCAGTTCTTGAT 59.775 45.455 5.06 0.00 32.43 2.57
3056 3172 3.433274 CAGAAACGCAGCAGTTCTTGATA 59.567 43.478 5.06 0.00 32.43 2.15
3057 3173 4.065088 AGAAACGCAGCAGTTCTTGATAA 58.935 39.130 2.32 0.00 32.43 1.75
3058 3174 4.697352 AGAAACGCAGCAGTTCTTGATAAT 59.303 37.500 2.32 0.00 32.43 1.28
3059 3175 4.346734 AACGCAGCAGTTCTTGATAATG 57.653 40.909 0.00 0.00 0.00 1.90
3060 3176 3.338249 ACGCAGCAGTTCTTGATAATGT 58.662 40.909 0.00 0.00 0.00 2.71
3061 3177 3.372206 ACGCAGCAGTTCTTGATAATGTC 59.628 43.478 0.00 0.00 0.00 3.06
3062 3178 3.620374 CGCAGCAGTTCTTGATAATGTCT 59.380 43.478 0.00 0.00 0.00 3.41
3063 3179 4.093998 CGCAGCAGTTCTTGATAATGTCTT 59.906 41.667 0.00 0.00 0.00 3.01
3064 3180 5.391310 CGCAGCAGTTCTTGATAATGTCTTT 60.391 40.000 0.00 0.00 0.00 2.52
3065 3181 6.026513 GCAGCAGTTCTTGATAATGTCTTTC 58.973 40.000 0.00 0.00 0.00 2.62
3066 3182 6.549952 CAGCAGTTCTTGATAATGTCTTTCC 58.450 40.000 0.00 0.00 0.00 3.13
3067 3183 6.373774 CAGCAGTTCTTGATAATGTCTTTCCT 59.626 38.462 0.00 0.00 0.00 3.36
3068 3184 6.944862 AGCAGTTCTTGATAATGTCTTTCCTT 59.055 34.615 0.00 0.00 0.00 3.36
3069 3185 7.025963 GCAGTTCTTGATAATGTCTTTCCTTG 58.974 38.462 0.00 0.00 0.00 3.61
3070 3186 7.308830 GCAGTTCTTGATAATGTCTTTCCTTGT 60.309 37.037 0.00 0.00 0.00 3.16
3071 3187 8.019669 CAGTTCTTGATAATGTCTTTCCTTGTG 58.980 37.037 0.00 0.00 0.00 3.33
3072 3188 7.939039 AGTTCTTGATAATGTCTTTCCTTGTGA 59.061 33.333 0.00 0.00 0.00 3.58
3073 3189 8.734386 GTTCTTGATAATGTCTTTCCTTGTGAT 58.266 33.333 0.00 0.00 0.00 3.06
3074 3190 8.498054 TCTTGATAATGTCTTTCCTTGTGATC 57.502 34.615 0.00 0.00 0.00 2.92
3075 3191 7.554118 TCTTGATAATGTCTTTCCTTGTGATCC 59.446 37.037 0.00 0.00 0.00 3.36
3076 3192 6.962182 TGATAATGTCTTTCCTTGTGATCCT 58.038 36.000 0.00 0.00 0.00 3.24
3077 3193 7.405292 TGATAATGTCTTTCCTTGTGATCCTT 58.595 34.615 0.00 0.00 0.00 3.36
3078 3194 7.554118 TGATAATGTCTTTCCTTGTGATCCTTC 59.446 37.037 0.00 0.00 0.00 3.46
3079 3195 4.021102 TGTCTTTCCTTGTGATCCTTCC 57.979 45.455 0.00 0.00 0.00 3.46
3080 3196 3.394274 TGTCTTTCCTTGTGATCCTTCCA 59.606 43.478 0.00 0.00 0.00 3.53
3081 3197 4.006319 GTCTTTCCTTGTGATCCTTCCAG 58.994 47.826 0.00 0.00 0.00 3.86
3082 3198 3.652869 TCTTTCCTTGTGATCCTTCCAGT 59.347 43.478 0.00 0.00 0.00 4.00
3083 3199 4.844085 TCTTTCCTTGTGATCCTTCCAGTA 59.156 41.667 0.00 0.00 0.00 2.74
3084 3200 5.488919 TCTTTCCTTGTGATCCTTCCAGTAT 59.511 40.000 0.00 0.00 0.00 2.12
3085 3201 5.779241 TTCCTTGTGATCCTTCCAGTATT 57.221 39.130 0.00 0.00 0.00 1.89
3086 3202 5.102953 TCCTTGTGATCCTTCCAGTATTG 57.897 43.478 0.00 0.00 0.00 1.90
3087 3203 4.536090 TCCTTGTGATCCTTCCAGTATTGT 59.464 41.667 0.00 0.00 0.00 2.71
3088 3204 5.724370 TCCTTGTGATCCTTCCAGTATTGTA 59.276 40.000 0.00 0.00 0.00 2.41
3089 3205 5.817816 CCTTGTGATCCTTCCAGTATTGTAC 59.182 44.000 0.00 0.00 0.00 2.90
3090 3206 5.006153 TGTGATCCTTCCAGTATTGTACG 57.994 43.478 0.00 0.00 0.00 3.67
3091 3207 4.707934 TGTGATCCTTCCAGTATTGTACGA 59.292 41.667 0.00 0.00 0.00 3.43
3092 3208 5.163550 TGTGATCCTTCCAGTATTGTACGAG 60.164 44.000 0.00 0.00 0.00 4.18
3093 3209 4.954202 TGATCCTTCCAGTATTGTACGAGT 59.046 41.667 0.00 0.00 0.00 4.18
3094 3210 4.713824 TCCTTCCAGTATTGTACGAGTG 57.286 45.455 0.00 0.00 0.00 3.51
3095 3211 3.446161 TCCTTCCAGTATTGTACGAGTGG 59.554 47.826 8.98 8.98 0.00 4.00
3096 3212 3.194968 CCTTCCAGTATTGTACGAGTGGT 59.805 47.826 13.11 0.00 0.00 4.16
3097 3213 3.861276 TCCAGTATTGTACGAGTGGTG 57.139 47.619 13.11 0.00 0.00 4.17
3098 3214 2.094390 TCCAGTATTGTACGAGTGGTGC 60.094 50.000 13.11 0.00 0.00 5.01
3099 3215 2.353307 CCAGTATTGTACGAGTGGTGCA 60.353 50.000 7.59 0.00 39.64 4.57
3100 3216 2.923655 CAGTATTGTACGAGTGGTGCAG 59.076 50.000 0.00 0.00 42.37 4.41
3101 3217 2.823747 AGTATTGTACGAGTGGTGCAGA 59.176 45.455 0.00 0.00 42.37 4.26
3102 3218 3.447586 AGTATTGTACGAGTGGTGCAGAT 59.552 43.478 0.00 0.00 42.37 2.90
3103 3219 2.831685 TTGTACGAGTGGTGCAGATT 57.168 45.000 0.00 0.00 42.37 2.40
3104 3220 2.078849 TGTACGAGTGGTGCAGATTG 57.921 50.000 0.00 0.00 36.25 2.67
3105 3221 0.721718 GTACGAGTGGTGCAGATTGC 59.278 55.000 0.00 0.00 45.29 3.56
3106 3222 0.608130 TACGAGTGGTGCAGATTGCT 59.392 50.000 2.48 0.00 45.31 3.91
3107 3223 0.608130 ACGAGTGGTGCAGATTGCTA 59.392 50.000 2.48 0.00 45.31 3.49
3108 3224 1.284657 CGAGTGGTGCAGATTGCTAG 58.715 55.000 2.48 0.00 45.31 3.42
3109 3225 1.134995 CGAGTGGTGCAGATTGCTAGA 60.135 52.381 0.00 0.00 45.31 2.43
3110 3226 2.482664 CGAGTGGTGCAGATTGCTAGAT 60.483 50.000 0.00 0.00 45.31 1.98
3111 3227 2.871022 GAGTGGTGCAGATTGCTAGATG 59.129 50.000 0.00 0.00 45.31 2.90
3112 3228 1.945394 GTGGTGCAGATTGCTAGATGG 59.055 52.381 0.00 0.00 45.31 3.51
3113 3229 1.561076 TGGTGCAGATTGCTAGATGGT 59.439 47.619 0.00 0.00 45.31 3.55
3114 3230 2.025981 TGGTGCAGATTGCTAGATGGTT 60.026 45.455 0.00 0.00 45.31 3.67
3115 3231 3.199727 TGGTGCAGATTGCTAGATGGTTA 59.800 43.478 0.00 0.00 45.31 2.85
3116 3232 4.199310 GGTGCAGATTGCTAGATGGTTAA 58.801 43.478 0.00 0.00 45.31 2.01
3117 3233 4.035675 GGTGCAGATTGCTAGATGGTTAAC 59.964 45.833 0.00 0.00 45.31 2.01
3118 3234 4.035675 GTGCAGATTGCTAGATGGTTAACC 59.964 45.833 18.27 18.27 45.31 2.85
3119 3235 4.080356 TGCAGATTGCTAGATGGTTAACCT 60.080 41.667 24.78 10.91 45.31 3.50
3120 3236 4.884164 GCAGATTGCTAGATGGTTAACCTT 59.116 41.667 24.78 18.87 40.96 3.50
3121 3237 5.008118 GCAGATTGCTAGATGGTTAACCTTC 59.992 44.000 25.82 25.82 40.96 3.46
3122 3238 7.132869 GCAGATTGCTAGATGGTTAACCTTCT 61.133 42.308 33.44 33.44 41.95 2.85
3123 3239 7.500992 CAGATTGCTAGATGGTTAACCTTCTA 58.499 38.462 32.49 32.49 45.39 2.10
3129 3245 5.941555 AGATGGTTAACCTTCTAGAGTGG 57.058 43.478 31.53 11.05 45.39 4.00
3130 3246 5.342866 AGATGGTTAACCTTCTAGAGTGGT 58.657 41.667 31.53 12.99 45.39 4.16
3131 3247 5.785940 AGATGGTTAACCTTCTAGAGTGGTT 59.214 40.000 31.53 25.43 45.39 3.67
3132 3248 5.899631 TGGTTAACCTTCTAGAGTGGTTT 57.100 39.130 26.55 16.08 43.07 3.27
3133 3249 5.861727 TGGTTAACCTTCTAGAGTGGTTTC 58.138 41.667 26.55 20.89 43.07 2.78
3134 3250 5.221783 TGGTTAACCTTCTAGAGTGGTTTCC 60.222 44.000 26.55 25.66 43.07 3.13
3135 3251 5.221783 GGTTAACCTTCTAGAGTGGTTTCCA 60.222 44.000 26.55 13.59 43.07 3.53
3136 3252 4.625607 AACCTTCTAGAGTGGTTTCCAG 57.374 45.455 20.08 1.84 40.76 3.86
3137 3253 3.858135 ACCTTCTAGAGTGGTTTCCAGA 58.142 45.455 12.15 0.00 32.34 3.86
3138 3254 4.232091 ACCTTCTAGAGTGGTTTCCAGAA 58.768 43.478 12.15 0.00 32.34 3.02
3139 3255 4.658901 ACCTTCTAGAGTGGTTTCCAGAAA 59.341 41.667 12.15 0.00 32.34 2.52
3150 3266 4.053903 GTTTCCAGAAACGAGATTCACG 57.946 45.455 7.46 1.81 40.85 4.35
3151 3267 3.653539 TTCCAGAAACGAGATTCACGA 57.346 42.857 10.49 0.00 34.70 4.35
3194 3312 3.096092 ACAAGACACCAGCAAAAAGGAA 58.904 40.909 0.00 0.00 0.00 3.36
3220 3341 4.379302 AAAAGAACAAGGAGGAGCTCAT 57.621 40.909 17.19 8.81 31.08 2.90
3223 3344 0.392193 AACAAGGAGGAGCTCATGCG 60.392 55.000 17.19 4.58 45.42 4.73
3228 3349 0.529555 GGAGGAGCTCATGCGAAGAC 60.530 60.000 17.19 0.00 45.42 3.01
3296 3418 7.058525 TGCTACTGTCTGGTAGTAATAAGCTA 58.941 38.462 0.00 0.00 40.70 3.32
3391 3522 1.600413 CGCCAAGACTGGTTTTCTTGC 60.600 52.381 6.58 2.70 45.88 4.01
3398 3529 0.313987 CTGGTTTTCTTGCGGGTTCC 59.686 55.000 0.00 0.00 0.00 3.62
3407 3538 2.111999 TTGCGGGTTCCTGACAGGAG 62.112 60.000 23.14 13.40 46.73 3.69
3429 3560 3.767630 AACGTGAGGCCGGCTTGTT 62.768 57.895 28.56 16.60 0.00 2.83
3434 3565 1.040339 TGAGGCCGGCTTGTTTGTTT 61.040 50.000 28.56 0.45 0.00 2.83
3435 3566 0.104120 GAGGCCGGCTTGTTTGTTTT 59.896 50.000 28.56 0.00 0.00 2.43
3436 3567 1.338655 GAGGCCGGCTTGTTTGTTTTA 59.661 47.619 28.56 0.00 0.00 1.52
3437 3568 1.067974 AGGCCGGCTTGTTTGTTTTAC 59.932 47.619 28.56 4.14 0.00 2.01
3438 3569 1.067974 GGCCGGCTTGTTTGTTTTACT 59.932 47.619 28.56 0.00 0.00 2.24
3439 3570 2.482316 GGCCGGCTTGTTTGTTTTACTT 60.482 45.455 28.56 0.00 0.00 2.24
3440 3571 3.243468 GGCCGGCTTGTTTGTTTTACTTA 60.243 43.478 28.56 0.00 0.00 2.24
3441 3572 3.978855 GCCGGCTTGTTTGTTTTACTTAG 59.021 43.478 22.15 0.00 0.00 2.18
3442 3573 4.542735 CCGGCTTGTTTGTTTTACTTAGG 58.457 43.478 0.00 0.00 0.00 2.69
3443 3574 3.978855 CGGCTTGTTTGTTTTACTTAGGC 59.021 43.478 0.00 0.00 0.00 3.93
3444 3575 4.304110 GGCTTGTTTGTTTTACTTAGGCC 58.696 43.478 0.00 0.00 0.00 5.19
3445 3576 4.304110 GCTTGTTTGTTTTACTTAGGCCC 58.696 43.478 0.00 0.00 0.00 5.80
3446 3577 4.038763 GCTTGTTTGTTTTACTTAGGCCCT 59.961 41.667 0.00 0.00 0.00 5.19
3447 3578 5.523438 TTGTTTGTTTTACTTAGGCCCTG 57.477 39.130 0.00 0.00 0.00 4.45
3448 3579 4.538738 TGTTTGTTTTACTTAGGCCCTGT 58.461 39.130 0.00 0.00 0.00 4.00
3449 3580 4.957327 TGTTTGTTTTACTTAGGCCCTGTT 59.043 37.500 0.00 0.00 0.00 3.16
3450 3581 5.422650 TGTTTGTTTTACTTAGGCCCTGTTT 59.577 36.000 0.00 0.00 0.00 2.83
3451 3582 5.523438 TTGTTTTACTTAGGCCCTGTTTG 57.477 39.130 0.00 0.00 0.00 2.93
3452 3583 3.892588 TGTTTTACTTAGGCCCTGTTTGG 59.107 43.478 0.00 0.00 0.00 3.28
3453 3584 4.146564 GTTTTACTTAGGCCCTGTTTGGA 58.853 43.478 0.00 0.00 38.35 3.53
3454 3585 4.456662 TTTACTTAGGCCCTGTTTGGAA 57.543 40.909 0.00 0.00 38.35 3.53
3455 3586 4.668138 TTACTTAGGCCCTGTTTGGAAT 57.332 40.909 0.00 0.00 38.35 3.01
3456 3587 2.807676 ACTTAGGCCCTGTTTGGAATG 58.192 47.619 0.00 0.00 38.35 2.67
3457 3588 2.110011 ACTTAGGCCCTGTTTGGAATGT 59.890 45.455 0.00 0.00 38.35 2.71
3458 3589 2.507407 TAGGCCCTGTTTGGAATGTC 57.493 50.000 0.00 0.00 38.35 3.06
3459 3590 0.609131 AGGCCCTGTTTGGAATGTCG 60.609 55.000 0.00 0.00 38.35 4.35
3460 3591 0.893727 GGCCCTGTTTGGAATGTCGT 60.894 55.000 0.00 0.00 38.35 4.34
3461 3592 0.958822 GCCCTGTTTGGAATGTCGTT 59.041 50.000 0.00 0.00 38.35 3.85
3462 3593 1.339929 GCCCTGTTTGGAATGTCGTTT 59.660 47.619 0.00 0.00 38.35 3.60
3463 3594 2.607038 GCCCTGTTTGGAATGTCGTTTC 60.607 50.000 0.00 0.00 38.35 2.78
3464 3595 2.884639 CCCTGTTTGGAATGTCGTTTCT 59.115 45.455 0.00 0.00 38.35 2.52
3465 3596 4.069304 CCCTGTTTGGAATGTCGTTTCTA 58.931 43.478 0.00 0.00 38.35 2.10
3466 3597 4.083484 CCCTGTTTGGAATGTCGTTTCTAC 60.083 45.833 0.00 0.00 38.35 2.59
3467 3598 4.755123 CCTGTTTGGAATGTCGTTTCTACT 59.245 41.667 0.00 0.00 38.35 2.57
3468 3599 5.238650 CCTGTTTGGAATGTCGTTTCTACTT 59.761 40.000 0.00 0.00 38.35 2.24
3469 3600 6.238648 CCTGTTTGGAATGTCGTTTCTACTTT 60.239 38.462 0.00 0.00 38.35 2.66
3470 3601 6.491394 TGTTTGGAATGTCGTTTCTACTTTG 58.509 36.000 0.00 0.00 0.00 2.77
3471 3602 6.316640 TGTTTGGAATGTCGTTTCTACTTTGA 59.683 34.615 0.00 0.00 0.00 2.69
3472 3603 6.928979 TTGGAATGTCGTTTCTACTTTGAA 57.071 33.333 0.00 0.00 0.00 2.69
3473 3604 7.504924 TTGGAATGTCGTTTCTACTTTGAAT 57.495 32.000 0.00 0.00 0.00 2.57
3474 3605 8.610248 TTGGAATGTCGTTTCTACTTTGAATA 57.390 30.769 0.00 0.00 0.00 1.75
3475 3606 8.025243 TGGAATGTCGTTTCTACTTTGAATAC 57.975 34.615 0.00 0.00 0.00 1.89
3476 3607 7.148705 TGGAATGTCGTTTCTACTTTGAATACG 60.149 37.037 0.00 0.00 34.78 3.06
3477 3608 5.505165 TGTCGTTTCTACTTTGAATACGC 57.495 39.130 0.00 0.00 34.18 4.42
3478 3609 5.224888 TGTCGTTTCTACTTTGAATACGCT 58.775 37.500 0.00 0.00 34.18 5.07
3479 3610 5.693104 TGTCGTTTCTACTTTGAATACGCTT 59.307 36.000 0.00 0.00 34.18 4.68
3480 3611 6.007677 GTCGTTTCTACTTTGAATACGCTTG 58.992 40.000 0.00 0.00 34.18 4.01
3481 3612 5.693104 TCGTTTCTACTTTGAATACGCTTGT 59.307 36.000 0.00 0.00 34.18 3.16
3482 3613 6.862608 TCGTTTCTACTTTGAATACGCTTGTA 59.137 34.615 0.00 0.00 34.18 2.41
3483 3614 7.381948 TCGTTTCTACTTTGAATACGCTTGTAA 59.618 33.333 0.00 0.00 34.18 2.41
3484 3615 8.005466 CGTTTCTACTTTGAATACGCTTGTAAA 58.995 33.333 0.00 0.00 0.00 2.01
3485 3616 9.654417 GTTTCTACTTTGAATACGCTTGTAAAA 57.346 29.630 0.00 0.00 0.00 1.52
3486 3617 9.872757 TTTCTACTTTGAATACGCTTGTAAAAG 57.127 29.630 0.00 0.00 33.02 2.27
3487 3618 8.597662 TCTACTTTGAATACGCTTGTAAAAGT 57.402 30.769 0.00 0.00 38.85 2.66
3488 3619 9.048446 TCTACTTTGAATACGCTTGTAAAAGTT 57.952 29.630 8.27 0.00 37.60 2.66
3490 3621 8.998558 ACTTTGAATACGCTTGTAAAAGTTAC 57.001 30.769 0.00 0.00 34.99 2.50
3491 3622 8.614346 ACTTTGAATACGCTTGTAAAAGTTACA 58.386 29.630 0.00 0.00 34.99 2.41
3492 3623 8.996988 TTTGAATACGCTTGTAAAAGTTACAG 57.003 30.769 1.49 0.00 0.00 2.74
3493 3624 7.124347 TGAATACGCTTGTAAAAGTTACAGG 57.876 36.000 6.03 6.03 0.00 4.00
3494 3625 3.891056 ACGCTTGTAAAAGTTACAGGC 57.109 42.857 19.59 19.59 44.01 4.85
3495 3626 2.551032 ACGCTTGTAAAAGTTACAGGCC 59.449 45.455 22.06 0.00 44.42 5.19
3496 3627 2.550606 CGCTTGTAAAAGTTACAGGCCA 59.449 45.455 22.06 1.37 44.42 5.36
3497 3628 3.608474 CGCTTGTAAAAGTTACAGGCCAC 60.608 47.826 22.06 0.00 44.42 5.01
3498 3629 3.305131 GCTTGTAAAAGTTACAGGCCACC 60.305 47.826 19.09 0.00 42.40 4.61
3499 3630 3.579534 TGTAAAAGTTACAGGCCACCA 57.420 42.857 5.01 0.00 0.00 4.17
3500 3631 4.107127 TGTAAAAGTTACAGGCCACCAT 57.893 40.909 5.01 0.00 0.00 3.55
3501 3632 4.076394 TGTAAAAGTTACAGGCCACCATC 58.924 43.478 5.01 0.00 0.00 3.51
3502 3633 2.215942 AAAGTTACAGGCCACCATCC 57.784 50.000 5.01 0.00 0.00 3.51
3503 3634 0.035439 AAGTTACAGGCCACCATCCG 60.035 55.000 5.01 0.00 0.00 4.18
3504 3635 1.198759 AGTTACAGGCCACCATCCGT 61.199 55.000 5.01 0.00 0.00 4.69
3505 3636 0.743345 GTTACAGGCCACCATCCGTC 60.743 60.000 5.01 0.00 0.00 4.79
3506 3637 2.233605 TTACAGGCCACCATCCGTCG 62.234 60.000 5.01 0.00 0.00 5.12
3507 3638 4.082523 CAGGCCACCATCCGTCGT 62.083 66.667 5.01 0.00 0.00 4.34
3508 3639 3.319198 AGGCCACCATCCGTCGTT 61.319 61.111 5.01 0.00 0.00 3.85
3509 3640 2.359478 GGCCACCATCCGTCGTTT 60.359 61.111 0.00 0.00 0.00 3.60
3510 3641 1.969589 GGCCACCATCCGTCGTTTT 60.970 57.895 0.00 0.00 0.00 2.43
3511 3642 1.500396 GCCACCATCCGTCGTTTTC 59.500 57.895 0.00 0.00 0.00 2.29
3512 3643 1.231958 GCCACCATCCGTCGTTTTCA 61.232 55.000 0.00 0.00 0.00 2.69
3513 3644 1.448985 CCACCATCCGTCGTTTTCAT 58.551 50.000 0.00 0.00 0.00 2.57
3514 3645 1.810151 CCACCATCCGTCGTTTTCATT 59.190 47.619 0.00 0.00 0.00 2.57
3515 3646 2.227865 CCACCATCCGTCGTTTTCATTT 59.772 45.455 0.00 0.00 0.00 2.32
3516 3647 3.488489 CACCATCCGTCGTTTTCATTTC 58.512 45.455 0.00 0.00 0.00 2.17
3517 3648 2.486592 ACCATCCGTCGTTTTCATTTCC 59.513 45.455 0.00 0.00 0.00 3.13
3518 3649 2.159435 CCATCCGTCGTTTTCATTTCCC 60.159 50.000 0.00 0.00 0.00 3.97
3519 3650 1.525941 TCCGTCGTTTTCATTTCCCC 58.474 50.000 0.00 0.00 0.00 4.81
3520 3651 0.524414 CCGTCGTTTTCATTTCCCCC 59.476 55.000 0.00 0.00 0.00 5.40
3521 3652 1.530323 CGTCGTTTTCATTTCCCCCT 58.470 50.000 0.00 0.00 0.00 4.79
3522 3653 1.199097 CGTCGTTTTCATTTCCCCCTG 59.801 52.381 0.00 0.00 0.00 4.45
3523 3654 1.067846 GTCGTTTTCATTTCCCCCTGC 60.068 52.381 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.329596 AATGGAGGGAGTGCAGGTTC 59.670 55.000 0.00 0.00 0.00 3.62
69 73 4.369182 TCGGAATCTTCTAATTTCGCTCC 58.631 43.478 0.00 0.00 37.51 4.70
72 76 3.495001 CCCTCGGAATCTTCTAATTTCGC 59.505 47.826 0.00 0.00 37.51 4.70
110 114 4.598894 CTCTGGGATGGCGCTCGG 62.599 72.222 7.64 0.00 0.00 4.63
112 116 2.657102 CTTCCTCTGGGATGGCGCTC 62.657 65.000 7.64 0.00 41.87 5.03
199 207 3.430862 GATTTGGTGCGCGCCTGA 61.431 61.111 37.39 26.36 0.00 3.86
436 444 7.036220 TCTCTTGAGTTCCAGAAACGATAATC 58.964 38.462 0.00 0.00 43.02 1.75
449 457 3.557228 AGATGCCATCTCTTGAGTTCC 57.443 47.619 0.08 0.00 33.42 3.62
496 504 3.803231 GCATCTACAGCAATCAGAGTCAG 59.197 47.826 0.00 0.00 0.00 3.51
499 507 2.770802 AGGCATCTACAGCAATCAGAGT 59.229 45.455 0.00 0.00 0.00 3.24
564 573 5.484998 ACATTAAGGCAAAATCTTGGGTGAT 59.515 36.000 0.00 0.00 32.76 3.06
683 695 2.035449 TCTTCGTCCGATCAACAACTGT 59.965 45.455 0.00 0.00 0.00 3.55
699 711 0.250234 TCTGCATTCCCAGGTCTTCG 59.750 55.000 0.00 0.00 33.64 3.79
706 718 2.159282 GCACATCTTTCTGCATTCCCAG 60.159 50.000 0.00 0.00 33.31 4.45
830 842 2.958213 CTTCAGACCACAGAGAGAAGC 58.042 52.381 0.00 0.00 0.00 3.86
833 845 1.615883 GTGCTTCAGACCACAGAGAGA 59.384 52.381 0.00 0.00 32.37 3.10
860 872 3.325425 TCAACAAATACTGACCCCTTCGA 59.675 43.478 0.00 0.00 0.00 3.71
969 984 5.904362 ATCTGAATGGAGTAAAACAAGCC 57.096 39.130 0.00 0.00 0.00 4.35
1044 1059 1.631405 CTTGTCCCAATTGCTTCCCA 58.369 50.000 0.00 0.00 0.00 4.37
1365 1380 2.032549 GCTGTGGCAATAGTCAATAGCG 60.033 50.000 0.00 0.00 33.88 4.26
1449 1464 6.914757 CACTCAAACCAAAATCTGAGACTTTC 59.085 38.462 5.01 0.00 38.91 2.62
1602 1617 4.438744 GCCACAAGCACATACAGAATTACC 60.439 45.833 0.00 0.00 42.97 2.85
1613 1628 4.479674 AGGTAACCAGCCACAAGCACAT 62.480 50.000 0.00 0.00 41.22 3.21
1910 1925 3.384789 GCTTAATGACCCTTGATTTCCCC 59.615 47.826 0.00 0.00 0.00 4.81
1968 1986 5.014123 ACCAGATAGATTGAACCCTGTTGAA 59.986 40.000 0.00 0.00 0.00 2.69
2178 2196 4.591321 AGGGGCTACATCAAAAATCTCA 57.409 40.909 0.00 0.00 0.00 3.27
2190 2208 2.632537 AGGAGAAAAGAAGGGGCTACA 58.367 47.619 0.00 0.00 0.00 2.74
2244 2262 6.347725 CCTCTTTCACCAACTTTTGATACTCG 60.348 42.308 0.00 0.00 0.00 4.18
2257 2275 3.497942 GGCCTTACTTCCTCTTTCACCAA 60.498 47.826 0.00 0.00 0.00 3.67
2379 2397 1.171308 GCAACTCATCATGTGGCTGT 58.829 50.000 0.00 0.00 32.00 4.40
2467 2485 1.111277 GGTGGTTGTTCCTGCAAGTT 58.889 50.000 0.00 0.00 37.07 2.66
2530 2548 2.547826 GTACTTTCATCCGGTACTGCC 58.452 52.381 0.00 0.00 34.68 4.85
2560 2578 5.450818 TGGAATTAGCAGTACAGGGAAAT 57.549 39.130 0.00 0.00 0.00 2.17
2620 2638 2.512056 TCAGGAGGAACTAGAGAGGAGG 59.488 54.545 0.00 0.00 41.55 4.30
2621 2639 3.943671 TCAGGAGGAACTAGAGAGGAG 57.056 52.381 0.00 0.00 41.55 3.69
2622 2640 4.890499 ATTCAGGAGGAACTAGAGAGGA 57.110 45.455 0.00 0.00 41.55 3.71
2623 2641 4.714308 ACAATTCAGGAGGAACTAGAGAGG 59.286 45.833 0.00 0.00 41.55 3.69
2624 2642 5.930837 ACAATTCAGGAGGAACTAGAGAG 57.069 43.478 0.00 0.00 41.55 3.20
2625 2643 7.579723 GCTTTACAATTCAGGAGGAACTAGAGA 60.580 40.741 0.00 0.00 41.55 3.10
2626 2644 6.536941 GCTTTACAATTCAGGAGGAACTAGAG 59.463 42.308 0.00 0.00 41.55 2.43
2627 2645 6.213600 AGCTTTACAATTCAGGAGGAACTAGA 59.786 38.462 0.00 0.00 41.55 2.43
2628 2646 6.410540 AGCTTTACAATTCAGGAGGAACTAG 58.589 40.000 0.00 0.00 41.55 2.57
2629 2647 6.374417 AGCTTTACAATTCAGGAGGAACTA 57.626 37.500 0.00 0.00 41.55 2.24
2631 2649 5.241728 ACAAGCTTTACAATTCAGGAGGAAC 59.758 40.000 0.00 0.00 38.60 3.62
2632 2650 5.241506 CACAAGCTTTACAATTCAGGAGGAA 59.758 40.000 0.00 0.00 40.46 3.36
2633 2651 4.761739 CACAAGCTTTACAATTCAGGAGGA 59.238 41.667 0.00 0.00 0.00 3.71
2785 2803 8.813282 CCTTGGAAAACAAATTACAACAAGTAC 58.187 33.333 0.00 0.00 38.91 2.73
2788 2806 7.978975 TCTCCTTGGAAAACAAATTACAACAAG 59.021 33.333 0.00 0.00 38.91 3.16
2791 2809 6.420903 GCTCTCCTTGGAAAACAAATTACAAC 59.579 38.462 0.00 0.00 38.91 3.32
2848 2866 4.734854 CAGAAACGTGTTCTTTGACCATTG 59.265 41.667 9.38 0.00 0.00 2.82
2900 2918 7.196637 AGGTACTCCCTCTGTAATTTTTAGG 57.803 40.000 0.00 0.00 40.71 2.69
2919 2937 5.346181 AGCACCTTAATCTTCAGAGGTAC 57.654 43.478 0.00 0.00 40.42 3.34
2922 2940 7.872113 AATAAAGCACCTTAATCTTCAGAGG 57.128 36.000 0.00 0.00 35.39 3.69
2923 2941 9.606631 ACTAATAAAGCACCTTAATCTTCAGAG 57.393 33.333 0.00 0.00 0.00 3.35
2924 2942 9.959721 AACTAATAAAGCACCTTAATCTTCAGA 57.040 29.630 0.00 0.00 0.00 3.27
2925 2943 9.994432 CAACTAATAAAGCACCTTAATCTTCAG 57.006 33.333 0.00 0.00 0.00 3.02
2926 2944 8.956426 CCAACTAATAAAGCACCTTAATCTTCA 58.044 33.333 0.00 0.00 0.00 3.02
2927 2945 8.406297 CCCAACTAATAAAGCACCTTAATCTTC 58.594 37.037 0.00 0.00 0.00 2.87
2930 2948 6.605995 ACCCCAACTAATAAAGCACCTTAATC 59.394 38.462 0.00 0.00 0.00 1.75
2931 2949 6.379988 CACCCCAACTAATAAAGCACCTTAAT 59.620 38.462 0.00 0.00 0.00 1.40
2934 2952 4.086457 CACCCCAACTAATAAAGCACCTT 58.914 43.478 0.00 0.00 0.00 3.50
2938 2956 7.350382 TCATTATCACCCCAACTAATAAAGCA 58.650 34.615 0.00 0.00 0.00 3.91
2939 2957 7.502561 ACTCATTATCACCCCAACTAATAAAGC 59.497 37.037 0.00 0.00 0.00 3.51
2940 2958 8.980481 ACTCATTATCACCCCAACTAATAAAG 57.020 34.615 0.00 0.00 0.00 1.85
2941 2959 9.762381 AAACTCATTATCACCCCAACTAATAAA 57.238 29.630 0.00 0.00 0.00 1.40
2942 2960 9.403583 GAAACTCATTATCACCCCAACTAATAA 57.596 33.333 0.00 0.00 0.00 1.40
2944 2962 7.410174 TGAAACTCATTATCACCCCAACTAAT 58.590 34.615 0.00 0.00 0.00 1.73
2946 2964 6.381498 TGAAACTCATTATCACCCCAACTA 57.619 37.500 0.00 0.00 0.00 2.24
2951 2969 3.555966 CCCTGAAACTCATTATCACCCC 58.444 50.000 0.00 0.00 0.00 4.95
2952 2970 3.555966 CCCCTGAAACTCATTATCACCC 58.444 50.000 0.00 0.00 0.00 4.61
2953 2971 3.202151 TCCCCCTGAAACTCATTATCACC 59.798 47.826 0.00 0.00 0.00 4.02
2954 2972 4.503714 TCCCCCTGAAACTCATTATCAC 57.496 45.455 0.00 0.00 0.00 3.06
2955 2973 5.732331 ATTCCCCCTGAAACTCATTATCA 57.268 39.130 0.00 0.00 36.33 2.15
2959 3075 5.970640 TCTACTATTCCCCCTGAAACTCATT 59.029 40.000 0.00 0.00 36.33 2.57
2960 3076 5.538877 TCTACTATTCCCCCTGAAACTCAT 58.461 41.667 0.00 0.00 36.33 2.90
2965 3081 5.045140 CAGGTTTCTACTATTCCCCCTGAAA 60.045 44.000 0.00 0.00 40.49 2.69
2967 3083 4.037927 CAGGTTTCTACTATTCCCCCTGA 58.962 47.826 0.00 0.00 40.49 3.86
2968 3084 3.780850 ACAGGTTTCTACTATTCCCCCTG 59.219 47.826 0.00 0.00 43.02 4.45
2969 3085 4.090027 ACAGGTTTCTACTATTCCCCCT 57.910 45.455 0.00 0.00 0.00 4.79
2972 3088 5.123979 CAGCAAACAGGTTTCTACTATTCCC 59.876 44.000 0.00 0.00 0.00 3.97
2973 3089 5.705905 ACAGCAAACAGGTTTCTACTATTCC 59.294 40.000 0.00 0.00 0.00 3.01
2976 3092 6.212791 TCCTACAGCAAACAGGTTTCTACTAT 59.787 38.462 0.00 0.00 0.00 2.12
2977 3093 5.541101 TCCTACAGCAAACAGGTTTCTACTA 59.459 40.000 0.00 0.00 0.00 1.82
2980 3096 4.347000 ACTCCTACAGCAAACAGGTTTCTA 59.653 41.667 0.00 0.00 0.00 2.10
2982 3098 3.477530 ACTCCTACAGCAAACAGGTTTC 58.522 45.455 0.00 0.00 0.00 2.78
2986 3102 2.622436 GCTACTCCTACAGCAAACAGG 58.378 52.381 0.00 0.00 37.73 4.00
2987 3103 2.622436 GGCTACTCCTACAGCAAACAG 58.378 52.381 0.00 0.00 39.63 3.16
2996 3112 1.064654 CGGTACAACGGCTACTCCTAC 59.935 57.143 0.00 0.00 0.00 3.18
2997 3113 1.340017 ACGGTACAACGGCTACTCCTA 60.340 52.381 0.00 0.00 38.39 2.94
2998 3114 0.610232 ACGGTACAACGGCTACTCCT 60.610 55.000 0.00 0.00 38.39 3.69
2999 3115 0.457337 CACGGTACAACGGCTACTCC 60.457 60.000 0.00 0.00 38.39 3.85
3000 3116 0.457337 CCACGGTACAACGGCTACTC 60.457 60.000 0.00 0.00 38.39 2.59
3001 3117 1.588082 CCACGGTACAACGGCTACT 59.412 57.895 0.00 0.00 38.39 2.57
3002 3118 1.446618 CCCACGGTACAACGGCTAC 60.447 63.158 0.00 0.00 38.39 3.58
3003 3119 2.972267 CCCACGGTACAACGGCTA 59.028 61.111 0.00 0.00 38.39 3.93
3007 3123 2.662527 AACGCCCACGGTACAACG 60.663 61.111 0.00 0.00 46.04 4.10
3009 3125 2.973600 GCAACGCCCACGGTACAA 60.974 61.111 0.00 0.00 46.04 2.41
3018 3134 3.969642 CTGCATTTCCGCAACGCCC 62.970 63.158 0.00 0.00 42.45 6.13
3019 3135 2.470801 TTCTGCATTTCCGCAACGCC 62.471 55.000 0.00 0.00 42.45 5.68
3020 3136 0.662970 TTTCTGCATTTCCGCAACGC 60.663 50.000 0.00 0.00 42.45 4.84
3021 3137 1.052287 GTTTCTGCATTTCCGCAACG 58.948 50.000 0.00 0.00 42.45 4.10
3022 3138 1.052287 CGTTTCTGCATTTCCGCAAC 58.948 50.000 0.00 0.00 42.45 4.17
3025 3141 1.067199 CTGCGTTTCTGCATTTCCGC 61.067 55.000 12.29 12.29 45.26 5.54
3026 3142 1.067199 GCTGCGTTTCTGCATTTCCG 61.067 55.000 0.00 0.00 45.26 4.30
3027 3143 0.039256 TGCTGCGTTTCTGCATTTCC 60.039 50.000 0.00 0.00 45.26 3.13
3028 3144 1.334054 CTGCTGCGTTTCTGCATTTC 58.666 50.000 0.00 0.00 46.31 2.17
3029 3145 0.670162 ACTGCTGCGTTTCTGCATTT 59.330 45.000 0.00 0.00 46.31 2.32
3031 3147 0.239347 GAACTGCTGCGTTTCTGCAT 59.761 50.000 10.27 0.00 46.31 3.96
3032 3148 0.815213 AGAACTGCTGCGTTTCTGCA 60.815 50.000 13.06 0.00 45.55 4.41
3033 3149 0.308993 AAGAACTGCTGCGTTTCTGC 59.691 50.000 14.18 2.40 39.73 4.26
3035 3151 1.953559 TCAAGAACTGCTGCGTTTCT 58.046 45.000 9.15 9.15 0.00 2.52
3036 3152 2.977405 ATCAAGAACTGCTGCGTTTC 57.023 45.000 10.27 7.83 0.00 2.78
3037 3153 4.216257 ACATTATCAAGAACTGCTGCGTTT 59.784 37.500 10.27 0.00 0.00 3.60
3038 3154 3.753272 ACATTATCAAGAACTGCTGCGTT 59.247 39.130 9.05 9.05 0.00 4.84
3039 3155 3.338249 ACATTATCAAGAACTGCTGCGT 58.662 40.909 0.00 0.00 0.00 5.24
3040 3156 3.620374 AGACATTATCAAGAACTGCTGCG 59.380 43.478 0.00 0.00 0.00 5.18
3042 3158 6.373774 AGGAAAGACATTATCAAGAACTGCTG 59.626 38.462 0.00 0.00 0.00 4.41
3043 3159 6.479884 AGGAAAGACATTATCAAGAACTGCT 58.520 36.000 0.00 0.00 0.00 4.24
3044 3160 6.749923 AGGAAAGACATTATCAAGAACTGC 57.250 37.500 0.00 0.00 0.00 4.40
3045 3161 8.019669 CACAAGGAAAGACATTATCAAGAACTG 58.980 37.037 0.00 0.00 0.00 3.16
3046 3162 7.939039 TCACAAGGAAAGACATTATCAAGAACT 59.061 33.333 0.00 0.00 0.00 3.01
3047 3163 8.099364 TCACAAGGAAAGACATTATCAAGAAC 57.901 34.615 0.00 0.00 0.00 3.01
3048 3164 8.868522 ATCACAAGGAAAGACATTATCAAGAA 57.131 30.769 0.00 0.00 0.00 2.52
3049 3165 7.554118 GGATCACAAGGAAAGACATTATCAAGA 59.446 37.037 0.00 0.00 0.00 3.02
3050 3166 7.555554 AGGATCACAAGGAAAGACATTATCAAG 59.444 37.037 0.00 0.00 0.00 3.02
3051 3167 7.405292 AGGATCACAAGGAAAGACATTATCAA 58.595 34.615 0.00 0.00 0.00 2.57
3052 3168 6.962182 AGGATCACAAGGAAAGACATTATCA 58.038 36.000 0.00 0.00 0.00 2.15
3053 3169 7.012799 GGAAGGATCACAAGGAAAGACATTATC 59.987 40.741 0.00 0.00 0.00 1.75
3054 3170 6.830838 GGAAGGATCACAAGGAAAGACATTAT 59.169 38.462 0.00 0.00 0.00 1.28
3055 3171 6.180472 GGAAGGATCACAAGGAAAGACATTA 58.820 40.000 0.00 0.00 0.00 1.90
3056 3172 5.012893 GGAAGGATCACAAGGAAAGACATT 58.987 41.667 0.00 0.00 0.00 2.71
3057 3173 4.043310 TGGAAGGATCACAAGGAAAGACAT 59.957 41.667 0.00 0.00 0.00 3.06
3058 3174 3.394274 TGGAAGGATCACAAGGAAAGACA 59.606 43.478 0.00 0.00 0.00 3.41
3059 3175 4.006319 CTGGAAGGATCACAAGGAAAGAC 58.994 47.826 0.00 0.00 0.00 3.01
3060 3176 3.652869 ACTGGAAGGATCACAAGGAAAGA 59.347 43.478 0.00 0.00 39.30 2.52
3061 3177 4.026356 ACTGGAAGGATCACAAGGAAAG 57.974 45.455 0.00 0.00 39.30 2.62
3062 3178 5.779241 ATACTGGAAGGATCACAAGGAAA 57.221 39.130 0.00 0.00 21.27 3.13
3063 3179 5.014123 ACAATACTGGAAGGATCACAAGGAA 59.986 40.000 0.00 0.00 35.41 3.36
3064 3180 4.536090 ACAATACTGGAAGGATCACAAGGA 59.464 41.667 0.00 0.00 35.41 3.36
3065 3181 4.848357 ACAATACTGGAAGGATCACAAGG 58.152 43.478 0.00 0.00 35.41 3.61
3066 3182 5.520288 CGTACAATACTGGAAGGATCACAAG 59.480 44.000 0.00 0.00 35.41 3.16
3067 3183 5.186215 TCGTACAATACTGGAAGGATCACAA 59.814 40.000 0.00 0.00 35.41 3.33
3068 3184 4.707934 TCGTACAATACTGGAAGGATCACA 59.292 41.667 0.00 0.00 35.41 3.58
3069 3185 5.163540 ACTCGTACAATACTGGAAGGATCAC 60.164 44.000 0.00 0.00 35.41 3.06
3070 3186 4.954202 ACTCGTACAATACTGGAAGGATCA 59.046 41.667 0.00 0.00 35.41 2.92
3071 3187 5.282510 CACTCGTACAATACTGGAAGGATC 58.717 45.833 0.00 0.00 35.41 3.36
3072 3188 4.099573 CCACTCGTACAATACTGGAAGGAT 59.900 45.833 0.00 0.00 41.45 3.24
3073 3189 3.446161 CCACTCGTACAATACTGGAAGGA 59.554 47.826 0.00 0.00 39.30 3.36
3074 3190 3.194968 ACCACTCGTACAATACTGGAAGG 59.805 47.826 0.00 0.00 39.30 3.46
3075 3191 4.174009 CACCACTCGTACAATACTGGAAG 58.826 47.826 0.00 0.00 42.29 3.46
3076 3192 3.615592 GCACCACTCGTACAATACTGGAA 60.616 47.826 0.00 0.00 0.00 3.53
3077 3193 2.094390 GCACCACTCGTACAATACTGGA 60.094 50.000 0.00 0.00 0.00 3.86
3078 3194 2.268298 GCACCACTCGTACAATACTGG 58.732 52.381 0.00 0.00 0.00 4.00
3079 3195 2.923655 CTGCACCACTCGTACAATACTG 59.076 50.000 0.00 0.00 0.00 2.74
3080 3196 2.823747 TCTGCACCACTCGTACAATACT 59.176 45.455 0.00 0.00 0.00 2.12
3081 3197 3.226346 TCTGCACCACTCGTACAATAC 57.774 47.619 0.00 0.00 0.00 1.89
3082 3198 4.180817 CAATCTGCACCACTCGTACAATA 58.819 43.478 0.00 0.00 0.00 1.90
3083 3199 3.002791 CAATCTGCACCACTCGTACAAT 58.997 45.455 0.00 0.00 0.00 2.71
3084 3200 2.412870 CAATCTGCACCACTCGTACAA 58.587 47.619 0.00 0.00 0.00 2.41
3085 3201 1.939381 GCAATCTGCACCACTCGTACA 60.939 52.381 0.00 0.00 44.26 2.90
3086 3202 0.721718 GCAATCTGCACCACTCGTAC 59.278 55.000 0.00 0.00 44.26 3.67
3087 3203 3.137484 GCAATCTGCACCACTCGTA 57.863 52.632 0.00 0.00 44.26 3.43
3088 3204 3.972227 GCAATCTGCACCACTCGT 58.028 55.556 0.00 0.00 44.26 4.18
3094 3210 6.940283 GGTTAACCATCTAGCAATCTGCACC 61.940 48.000 20.12 0.00 40.17 5.01
3095 3211 4.035675 GGTTAACCATCTAGCAATCTGCAC 59.964 45.833 20.12 0.00 40.17 4.57
3096 3212 4.080356 AGGTTAACCATCTAGCAATCTGCA 60.080 41.667 26.26 0.00 41.94 4.41
3097 3213 4.455606 AGGTTAACCATCTAGCAATCTGC 58.544 43.478 26.26 0.00 40.54 4.26
3098 3214 6.352516 AGAAGGTTAACCATCTAGCAATCTG 58.647 40.000 26.83 0.00 41.78 2.90
3099 3215 6.567602 AGAAGGTTAACCATCTAGCAATCT 57.432 37.500 26.83 12.35 41.78 2.40
3106 3222 6.500336 ACCACTCTAGAAGGTTAACCATCTA 58.500 40.000 28.85 28.85 41.78 1.98
3107 3223 5.342866 ACCACTCTAGAAGGTTAACCATCT 58.657 41.667 29.60 29.60 45.14 2.90
3108 3224 5.678955 ACCACTCTAGAAGGTTAACCATC 57.321 43.478 26.26 22.97 38.89 3.51
3109 3225 6.449830 AAACCACTCTAGAAGGTTAACCAT 57.550 37.500 26.26 15.29 44.44 3.55
3110 3226 5.221783 GGAAACCACTCTAGAAGGTTAACCA 60.222 44.000 26.26 4.80 44.44 3.67
3111 3227 5.221783 TGGAAACCACTCTAGAAGGTTAACC 60.222 44.000 25.59 25.59 44.44 2.85
3112 3228 5.861727 TGGAAACCACTCTAGAAGGTTAAC 58.138 41.667 22.73 19.00 44.44 2.01
3113 3229 5.842328 TCTGGAAACCACTCTAGAAGGTTAA 59.158 40.000 22.73 13.93 44.44 2.01
3114 3230 5.399991 TCTGGAAACCACTCTAGAAGGTTA 58.600 41.667 22.73 11.46 44.44 2.85
3116 3232 3.858135 TCTGGAAACCACTCTAGAAGGT 58.142 45.455 10.07 10.07 37.20 3.50
3117 3233 4.891992 TTCTGGAAACCACTCTAGAAGG 57.108 45.455 8.90 8.90 37.83 3.46
3118 3234 4.686554 CGTTTCTGGAAACCACTCTAGAAG 59.313 45.833 17.16 0.00 45.78 2.85
3119 3235 4.342951 TCGTTTCTGGAAACCACTCTAGAA 59.657 41.667 17.16 0.00 45.78 2.10
3120 3236 3.893200 TCGTTTCTGGAAACCACTCTAGA 59.107 43.478 17.16 0.00 45.78 2.43
3121 3237 4.022242 TCTCGTTTCTGGAAACCACTCTAG 60.022 45.833 17.16 5.15 45.78 2.43
3122 3238 3.893200 TCTCGTTTCTGGAAACCACTCTA 59.107 43.478 17.16 0.00 45.78 2.43
3123 3239 2.698797 TCTCGTTTCTGGAAACCACTCT 59.301 45.455 17.16 0.00 45.78 3.24
3124 3240 3.107642 TCTCGTTTCTGGAAACCACTC 57.892 47.619 17.16 0.00 45.78 3.51
3125 3241 3.771577 ATCTCGTTTCTGGAAACCACT 57.228 42.857 17.16 1.67 45.78 4.00
3126 3242 3.813166 TGAATCTCGTTTCTGGAAACCAC 59.187 43.478 17.16 6.41 45.78 4.16
3127 3243 3.813166 GTGAATCTCGTTTCTGGAAACCA 59.187 43.478 17.16 6.91 45.78 3.67
3128 3244 3.120649 CGTGAATCTCGTTTCTGGAAACC 60.121 47.826 17.16 6.00 45.78 3.27
3129 3245 3.739300 TCGTGAATCTCGTTTCTGGAAAC 59.261 43.478 14.14 14.14 45.25 2.78
3130 3246 3.985008 TCGTGAATCTCGTTTCTGGAAA 58.015 40.909 4.63 0.00 0.00 3.13
3131 3247 3.575630 CTCGTGAATCTCGTTTCTGGAA 58.424 45.455 4.63 0.00 0.00 3.53
3132 3248 2.094700 CCTCGTGAATCTCGTTTCTGGA 60.095 50.000 4.63 0.00 0.00 3.86
3133 3249 2.263077 CCTCGTGAATCTCGTTTCTGG 58.737 52.381 4.63 0.00 0.00 3.86
3134 3250 1.656095 GCCTCGTGAATCTCGTTTCTG 59.344 52.381 4.63 0.00 0.00 3.02
3135 3251 1.732732 CGCCTCGTGAATCTCGTTTCT 60.733 52.381 4.63 0.00 0.00 2.52
3136 3252 0.640768 CGCCTCGTGAATCTCGTTTC 59.359 55.000 4.63 0.00 0.00 2.78
3137 3253 1.352156 GCGCCTCGTGAATCTCGTTT 61.352 55.000 0.00 0.00 0.00 3.60
3138 3254 1.805945 GCGCCTCGTGAATCTCGTT 60.806 57.895 0.00 0.00 0.00 3.85
3139 3255 2.202623 GCGCCTCGTGAATCTCGT 60.203 61.111 0.00 0.00 0.00 4.18
3140 3256 3.315521 CGCGCCTCGTGAATCTCG 61.316 66.667 0.00 0.00 39.94 4.04
3141 3257 2.685387 ATCCGCGCCTCGTGAATCTC 62.685 60.000 0.00 0.00 39.94 2.75
3142 3258 2.786495 ATCCGCGCCTCGTGAATCT 61.786 57.895 0.00 0.00 39.94 2.40
3143 3259 2.279517 ATCCGCGCCTCGTGAATC 60.280 61.111 0.00 0.00 39.94 2.52
3144 3260 2.011741 TACATCCGCGCCTCGTGAAT 62.012 55.000 0.00 0.00 39.94 2.57
3145 3261 2.607668 CTACATCCGCGCCTCGTGAA 62.608 60.000 0.00 0.00 39.94 3.18
3146 3262 3.120979 CTACATCCGCGCCTCGTGA 62.121 63.158 0.00 0.00 39.94 4.35
3147 3263 2.607668 TTCTACATCCGCGCCTCGTG 62.608 60.000 0.00 0.00 37.10 4.35
3148 3264 2.337749 CTTCTACATCCGCGCCTCGT 62.338 60.000 0.00 0.00 36.19 4.18
3149 3265 1.658717 CTTCTACATCCGCGCCTCG 60.659 63.158 0.00 0.00 38.08 4.63
3150 3266 1.300233 CCTTCTACATCCGCGCCTC 60.300 63.158 0.00 0.00 0.00 4.70
3151 3267 1.115930 ATCCTTCTACATCCGCGCCT 61.116 55.000 0.00 0.00 0.00 5.52
3194 3312 3.752218 GCTCCTCCTTGTTCTTTTTCCCT 60.752 47.826 0.00 0.00 0.00 4.20
3220 3341 0.942410 CGGGAACTTTCGTCTTCGCA 60.942 55.000 0.00 0.00 36.96 5.10
3223 3344 2.381725 ATCCGGGAACTTTCGTCTTC 57.618 50.000 0.00 0.00 0.00 2.87
3228 3349 3.521947 AGACTAATCCGGGAACTTTCG 57.478 47.619 0.00 0.00 0.00 3.46
3239 3361 8.567948 TCAGAAACATCAAAACAAGACTAATCC 58.432 33.333 0.00 0.00 0.00 3.01
3375 3506 1.318576 CCCGCAAGAAAACCAGTCTT 58.681 50.000 0.00 0.00 43.02 3.01
3391 3522 2.266055 GCTCCTGTCAGGAACCCG 59.734 66.667 22.08 11.71 45.28 5.28
3398 3529 0.315251 TCACGTTCAGCTCCTGTCAG 59.685 55.000 0.00 0.00 32.61 3.51
3429 3560 4.342665 CCAAACAGGGCCTAAGTAAAACAA 59.657 41.667 5.28 0.00 0.00 2.83
3434 3565 4.202631 ACATTCCAAACAGGGCCTAAGTAA 60.203 41.667 5.28 0.00 38.24 2.24
3435 3566 3.332485 ACATTCCAAACAGGGCCTAAGTA 59.668 43.478 5.28 0.00 38.24 2.24
3436 3567 2.110011 ACATTCCAAACAGGGCCTAAGT 59.890 45.455 5.28 0.00 38.24 2.24
3437 3568 2.755103 GACATTCCAAACAGGGCCTAAG 59.245 50.000 5.28 0.00 38.24 2.18
3438 3569 2.802719 GACATTCCAAACAGGGCCTAA 58.197 47.619 5.28 0.00 38.24 2.69
3439 3570 1.339631 CGACATTCCAAACAGGGCCTA 60.340 52.381 5.28 0.00 38.24 3.93
3440 3571 0.609131 CGACATTCCAAACAGGGCCT 60.609 55.000 0.00 0.00 38.24 5.19
3441 3572 0.893727 ACGACATTCCAAACAGGGCC 60.894 55.000 0.00 0.00 38.24 5.80
3442 3573 0.958822 AACGACATTCCAAACAGGGC 59.041 50.000 0.00 0.00 38.24 5.19
3443 3574 2.884639 AGAAACGACATTCCAAACAGGG 59.115 45.455 0.00 0.00 38.24 4.45
3444 3575 4.755123 AGTAGAAACGACATTCCAAACAGG 59.245 41.667 0.00 0.00 39.47 4.00
3445 3576 5.924475 AGTAGAAACGACATTCCAAACAG 57.076 39.130 0.00 0.00 0.00 3.16
3446 3577 6.316640 TCAAAGTAGAAACGACATTCCAAACA 59.683 34.615 0.00 0.00 0.00 2.83
3447 3578 6.721321 TCAAAGTAGAAACGACATTCCAAAC 58.279 36.000 0.00 0.00 0.00 2.93
3448 3579 6.928979 TCAAAGTAGAAACGACATTCCAAA 57.071 33.333 0.00 0.00 0.00 3.28
3449 3580 6.928979 TTCAAAGTAGAAACGACATTCCAA 57.071 33.333 0.00 0.00 0.00 3.53
3450 3581 7.148705 CGTATTCAAAGTAGAAACGACATTCCA 60.149 37.037 0.00 0.00 35.78 3.53
3451 3582 7.171434 CGTATTCAAAGTAGAAACGACATTCC 58.829 38.462 0.00 0.00 35.78 3.01
3452 3583 6.677411 GCGTATTCAAAGTAGAAACGACATTC 59.323 38.462 0.00 0.00 35.78 2.67
3453 3584 6.367969 AGCGTATTCAAAGTAGAAACGACATT 59.632 34.615 0.00 0.00 35.78 2.71
3454 3585 5.867716 AGCGTATTCAAAGTAGAAACGACAT 59.132 36.000 0.00 0.00 35.78 3.06
3455 3586 5.224888 AGCGTATTCAAAGTAGAAACGACA 58.775 37.500 0.00 0.00 35.78 4.35
3456 3587 5.758570 AGCGTATTCAAAGTAGAAACGAC 57.241 39.130 0.00 0.00 35.78 4.34
3457 3588 5.693104 ACAAGCGTATTCAAAGTAGAAACGA 59.307 36.000 0.00 0.00 35.78 3.85
3458 3589 5.912528 ACAAGCGTATTCAAAGTAGAAACG 58.087 37.500 0.00 0.00 36.28 3.60
3459 3590 9.654417 TTTTACAAGCGTATTCAAAGTAGAAAC 57.346 29.630 0.00 0.00 0.00 2.78
3460 3591 9.872757 CTTTTACAAGCGTATTCAAAGTAGAAA 57.127 29.630 0.00 0.00 0.00 2.52
3461 3592 9.048446 ACTTTTACAAGCGTATTCAAAGTAGAA 57.952 29.630 0.00 0.00 35.71 2.10
3462 3593 8.597662 ACTTTTACAAGCGTATTCAAAGTAGA 57.402 30.769 0.00 0.00 35.71 2.59
3465 3596 8.614346 TGTAACTTTTACAAGCGTATTCAAAGT 58.386 29.630 0.00 0.00 37.60 2.66
3466 3597 8.996988 TGTAACTTTTACAAGCGTATTCAAAG 57.003 30.769 0.00 0.00 32.66 2.77
3467 3598 8.071368 CCTGTAACTTTTACAAGCGTATTCAAA 58.929 33.333 0.74 0.00 32.57 2.69
3468 3599 7.577979 CCTGTAACTTTTACAAGCGTATTCAA 58.422 34.615 0.74 0.00 32.57 2.69
3469 3600 6.347888 GCCTGTAACTTTTACAAGCGTATTCA 60.348 38.462 4.38 0.00 32.57 2.57
3470 3601 6.019762 GCCTGTAACTTTTACAAGCGTATTC 58.980 40.000 4.38 0.00 32.57 1.75
3471 3602 5.106436 GGCCTGTAACTTTTACAAGCGTATT 60.106 40.000 11.61 0.00 36.14 1.89
3472 3603 4.393990 GGCCTGTAACTTTTACAAGCGTAT 59.606 41.667 11.61 0.00 36.14 3.06
3473 3604 3.747529 GGCCTGTAACTTTTACAAGCGTA 59.252 43.478 11.61 0.00 36.14 4.42
3474 3605 2.551032 GGCCTGTAACTTTTACAAGCGT 59.449 45.455 11.61 0.00 36.14 5.07
3475 3606 2.550606 TGGCCTGTAACTTTTACAAGCG 59.449 45.455 3.32 0.56 36.14 4.68
3476 3607 3.305131 GGTGGCCTGTAACTTTTACAAGC 60.305 47.826 3.32 10.06 34.94 4.01
3477 3608 3.886505 TGGTGGCCTGTAACTTTTACAAG 59.113 43.478 3.32 0.00 35.92 3.16
3478 3609 3.899726 TGGTGGCCTGTAACTTTTACAA 58.100 40.909 3.32 0.00 0.00 2.41
3479 3610 3.579534 TGGTGGCCTGTAACTTTTACA 57.420 42.857 3.32 0.00 0.00 2.41
3480 3611 3.442625 GGATGGTGGCCTGTAACTTTTAC 59.557 47.826 3.32 0.00 0.00 2.01
3481 3612 3.692690 GGATGGTGGCCTGTAACTTTTA 58.307 45.455 3.32 0.00 0.00 1.52
3482 3613 2.525368 GGATGGTGGCCTGTAACTTTT 58.475 47.619 3.32 0.00 0.00 2.27
3483 3614 1.613255 CGGATGGTGGCCTGTAACTTT 60.613 52.381 3.32 0.00 0.00 2.66
3484 3615 0.035439 CGGATGGTGGCCTGTAACTT 60.035 55.000 3.32 0.00 0.00 2.66
3485 3616 1.198759 ACGGATGGTGGCCTGTAACT 61.199 55.000 3.32 0.00 0.00 2.24
3486 3617 0.743345 GACGGATGGTGGCCTGTAAC 60.743 60.000 3.32 0.00 0.00 2.50
3487 3618 1.600107 GACGGATGGTGGCCTGTAA 59.400 57.895 3.32 0.00 0.00 2.41
3488 3619 2.717044 CGACGGATGGTGGCCTGTA 61.717 63.158 3.32 0.00 0.00 2.74
3489 3620 4.082523 CGACGGATGGTGGCCTGT 62.083 66.667 3.32 0.00 0.00 4.00
3490 3621 3.605749 AACGACGGATGGTGGCCTG 62.606 63.158 3.32 0.00 0.00 4.85
3491 3622 2.406002 AAAACGACGGATGGTGGCCT 62.406 55.000 3.32 0.00 0.00 5.19
3492 3623 1.918868 GAAAACGACGGATGGTGGCC 61.919 60.000 0.00 0.00 0.00 5.36
3493 3624 1.231958 TGAAAACGACGGATGGTGGC 61.232 55.000 0.00 0.00 0.00 5.01
3494 3625 1.448985 ATGAAAACGACGGATGGTGG 58.551 50.000 0.00 0.00 0.00 4.61
3495 3626 3.488489 GAAATGAAAACGACGGATGGTG 58.512 45.455 0.00 0.00 0.00 4.17
3496 3627 2.486592 GGAAATGAAAACGACGGATGGT 59.513 45.455 0.00 0.00 0.00 3.55
3497 3628 2.159435 GGGAAATGAAAACGACGGATGG 60.159 50.000 0.00 0.00 0.00 3.51
3498 3629 2.159435 GGGGAAATGAAAACGACGGATG 60.159 50.000 0.00 0.00 0.00 3.51
3499 3630 2.089201 GGGGAAATGAAAACGACGGAT 58.911 47.619 0.00 0.00 0.00 4.18
3500 3631 1.525941 GGGGAAATGAAAACGACGGA 58.474 50.000 0.00 0.00 0.00 4.69
3501 3632 0.524414 GGGGGAAATGAAAACGACGG 59.476 55.000 0.00 0.00 0.00 4.79
3502 3633 1.199097 CAGGGGGAAATGAAAACGACG 59.801 52.381 0.00 0.00 0.00 5.12
3503 3634 1.067846 GCAGGGGGAAATGAAAACGAC 60.068 52.381 0.00 0.00 0.00 4.34
3504 3635 1.253100 GCAGGGGGAAATGAAAACGA 58.747 50.000 0.00 0.00 0.00 3.85
3505 3636 3.812577 GCAGGGGGAAATGAAAACG 57.187 52.632 0.00 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.