Multiple sequence alignment - TraesCS3B01G372600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G372600 chr3B 100.000 3039 0 0 1 3039 585140099 585137061 0.000000e+00 5613.0
1 TraesCS3B01G372600 chr3B 87.201 1172 107 24 1034 2185 585023495 585022347 0.000000e+00 1293.0
2 TraesCS3B01G372600 chr3B 87.205 1102 68 40 829 1891 584985439 584984372 0.000000e+00 1186.0
3 TraesCS3B01G372600 chr3B 82.243 535 77 16 2175 2696 585022322 585021793 2.150000e-121 446.0
4 TraesCS3B01G372600 chr3D 87.154 2024 172 42 707 2696 446192106 446190137 0.000000e+00 2217.0
5 TraesCS3B01G372600 chr3D 87.580 1256 105 27 956 2185 446110191 446108961 0.000000e+00 1408.0
6 TraesCS3B01G372600 chr3D 85.832 1094 91 31 826 1891 446075809 446074752 0.000000e+00 1103.0
7 TraesCS3B01G372600 chr3D 94.462 650 29 2 8 651 446192753 446192105 0.000000e+00 994.0
8 TraesCS3B01G372600 chr3D 100.000 28 0 0 26 53 446114705 446114678 5.000000e-03 52.8
9 TraesCS3B01G372600 chr3A 89.605 1520 111 25 669 2157 587966875 587965372 0.000000e+00 1888.0
10 TraesCS3B01G372600 chr3A 87.085 1324 102 38 823 2110 587906531 587905241 0.000000e+00 1434.0
11 TraesCS3B01G372600 chr3A 84.258 1099 85 48 829 1891 587884964 587883918 0.000000e+00 990.0
12 TraesCS3B01G372600 chr3A 93.450 458 29 1 1 458 587967603 587967147 0.000000e+00 678.0
13 TraesCS3B01G372600 chr3A 76.923 533 101 12 2098 2619 587904163 587903642 1.780000e-72 283.0
14 TraesCS3B01G372600 chr3A 93.162 117 8 0 2315 2431 587965361 587965245 4.030000e-39 172.0
15 TraesCS3B01G372600 chr3A 89.051 137 15 0 2529 2665 587965225 587965089 1.450000e-38 171.0
16 TraesCS3B01G372600 chr7B 94.379 338 19 0 2702 3039 202500610 202500273 1.250000e-143 520.0
17 TraesCS3B01G372600 chr5B 94.083 338 20 0 2702 3039 449888554 449888217 5.810000e-142 514.0
18 TraesCS3B01G372600 chr5B 93.510 339 21 1 2701 3039 356052680 356052343 1.260000e-138 503.0
19 TraesCS3B01G372600 chr2B 93.586 343 21 1 2697 3039 35329723 35330064 7.520000e-141 510.0
20 TraesCS3B01G372600 chr2B 93.787 338 21 0 2702 3039 379407781 379407444 2.700000e-140 508.0
21 TraesCS3B01G372600 chr2B 93.491 338 22 0 2702 3039 373777740 373777403 1.260000e-138 503.0
22 TraesCS3B01G372600 chr2B 93.491 338 22 0 2702 3039 379341203 379340866 1.260000e-138 503.0
23 TraesCS3B01G372600 chr4B 93.294 343 23 0 2697 3039 613371087 613370745 9.720000e-140 507.0
24 TraesCS3B01G372600 chr4B 93.510 339 22 0 2701 3039 49483145 49482807 3.500000e-139 505.0
25 TraesCS3B01G372600 chr4D 85.227 88 13 0 1207 1294 102534314 102534227 1.160000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G372600 chr3B 585137061 585140099 3038 True 5613.00 5613 100.000 1 3039 1 chr3B.!!$R2 3038
1 TraesCS3B01G372600 chr3B 584984372 584985439 1067 True 1186.00 1186 87.205 829 1891 1 chr3B.!!$R1 1062
2 TraesCS3B01G372600 chr3B 585021793 585023495 1702 True 869.50 1293 84.722 1034 2696 2 chr3B.!!$R3 1662
3 TraesCS3B01G372600 chr3D 446190137 446192753 2616 True 1605.50 2217 90.808 8 2696 2 chr3D.!!$R4 2688
4 TraesCS3B01G372600 chr3D 446108961 446110191 1230 True 1408.00 1408 87.580 956 2185 1 chr3D.!!$R2 1229
5 TraesCS3B01G372600 chr3D 446074752 446075809 1057 True 1103.00 1103 85.832 826 1891 1 chr3D.!!$R1 1065
6 TraesCS3B01G372600 chr3A 587883918 587884964 1046 True 990.00 990 84.258 829 1891 1 chr3A.!!$R1 1062
7 TraesCS3B01G372600 chr3A 587903642 587906531 2889 True 858.50 1434 82.004 823 2619 2 chr3A.!!$R2 1796
8 TraesCS3B01G372600 chr3A 587965089 587967603 2514 True 727.25 1888 91.317 1 2665 4 chr3A.!!$R3 2664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 1059 0.389426 CAACATGCCTTTGCCTCTGC 60.389 55.0 0.0 0.0 36.33 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2787 4154 0.031043 CACCACGTCCGTGTCAAGTA 59.969 55.0 17.52 0.0 44.02 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 177 1.300620 TGTCGTTAGCGCTTGCACT 60.301 52.632 18.68 0.00 42.66 4.40
201 208 6.219417 TGTTATCGGCATGGAATTGATTTT 57.781 33.333 0.00 0.00 0.00 1.82
202 209 6.272318 TGTTATCGGCATGGAATTGATTTTC 58.728 36.000 0.00 0.00 0.00 2.29
263 270 2.502947 TGAGACGCACTAGGGTAGAGTA 59.497 50.000 0.00 0.00 41.49 2.59
277 284 3.512724 GGTAGAGTACTAGCACACCCAAA 59.487 47.826 0.00 0.00 43.84 3.28
280 287 1.003233 AGTACTAGCACACCCAAAGCC 59.997 52.381 0.00 0.00 0.00 4.35
359 366 2.674796 ATGCTCCGTTAGTGAACTCC 57.325 50.000 0.00 0.00 33.01 3.85
457 464 4.758688 CATACTGTTACTGTGATGGAGCA 58.241 43.478 5.14 0.00 0.00 4.26
458 465 3.325293 ACTGTTACTGTGATGGAGCAG 57.675 47.619 0.00 0.00 38.58 4.24
459 466 2.005451 CTGTTACTGTGATGGAGCAGC 58.995 52.381 0.00 0.00 36.26 5.25
460 467 1.625315 TGTTACTGTGATGGAGCAGCT 59.375 47.619 0.00 0.00 36.26 4.24
461 468 2.038952 TGTTACTGTGATGGAGCAGCTT 59.961 45.455 0.00 0.00 36.26 3.74
462 469 3.260632 TGTTACTGTGATGGAGCAGCTTA 59.739 43.478 0.00 0.00 36.26 3.09
463 470 4.253685 GTTACTGTGATGGAGCAGCTTAA 58.746 43.478 0.00 0.00 36.26 1.85
464 471 3.641434 ACTGTGATGGAGCAGCTTAAT 57.359 42.857 0.00 0.00 36.26 1.40
465 472 3.539604 ACTGTGATGGAGCAGCTTAATC 58.460 45.455 0.00 3.81 36.26 1.75
466 473 3.199508 ACTGTGATGGAGCAGCTTAATCT 59.800 43.478 15.64 0.00 36.26 2.40
467 474 3.538591 TGTGATGGAGCAGCTTAATCTG 58.461 45.455 15.64 1.84 37.15 2.90
475 482 0.590195 CAGCTTAATCTGCCGGATGC 59.410 55.000 5.05 0.00 41.77 3.91
476 483 0.882042 AGCTTAATCTGCCGGATGCG 60.882 55.000 5.05 0.00 45.60 4.73
561 596 0.594796 CCAACTGAAAACTGCCACGC 60.595 55.000 0.00 0.00 0.00 5.34
654 689 7.921786 TCACATTTAGTTTCATGGTTAGAGG 57.078 36.000 0.00 0.00 0.00 3.69
655 690 6.374333 TCACATTTAGTTTCATGGTTAGAGGC 59.626 38.462 0.00 0.00 0.00 4.70
656 691 6.150976 CACATTTAGTTTCATGGTTAGAGGCA 59.849 38.462 0.00 0.00 0.00 4.75
657 692 6.719370 ACATTTAGTTTCATGGTTAGAGGCAA 59.281 34.615 0.00 0.00 0.00 4.52
659 694 6.569179 TTAGTTTCATGGTTAGAGGCAAAC 57.431 37.500 0.00 0.00 0.00 2.93
660 695 4.729868 AGTTTCATGGTTAGAGGCAAACT 58.270 39.130 0.00 0.00 0.00 2.66
661 696 4.762251 AGTTTCATGGTTAGAGGCAAACTC 59.238 41.667 0.00 0.00 46.98 3.01
676 799 4.860907 GGCAAACTCACAGAAATAGCATTG 59.139 41.667 0.00 0.00 0.00 2.82
687 810 6.886459 ACAGAAATAGCATTGTTGGTAGACAT 59.114 34.615 0.00 0.00 39.08 3.06
691 814 8.978874 AAATAGCATTGTTGGTAGACATATCA 57.021 30.769 0.00 0.00 39.08 2.15
694 817 6.000219 AGCATTGTTGGTAGACATATCATCC 59.000 40.000 0.00 0.00 0.00 3.51
741 876 8.940952 GCATTCTCTAGTTGTTGAGAGTAAATT 58.059 33.333 0.00 0.00 39.98 1.82
777 915 9.364989 GTGCAGCCATTTGTTAATAGATTTTTA 57.635 29.630 0.00 0.00 0.00 1.52
795 933 8.636213 AGATTTTTATTCCAAGCAATCGATGAT 58.364 29.630 0.00 0.00 0.00 2.45
796 934 7.990541 TTTTTATTCCAAGCAATCGATGATG 57.009 32.000 0.00 0.00 0.00 3.07
802 943 3.756963 CCAAGCAATCGATGATGGATGAT 59.243 43.478 0.00 0.00 38.94 2.45
909 1056 2.097825 AGATCAACATGCCTTTGCCTC 58.902 47.619 0.00 0.00 36.33 4.70
910 1057 2.097825 GATCAACATGCCTTTGCCTCT 58.902 47.619 0.00 0.00 36.33 3.69
911 1058 1.250328 TCAACATGCCTTTGCCTCTG 58.750 50.000 0.00 0.00 36.33 3.35
912 1059 0.389426 CAACATGCCTTTGCCTCTGC 60.389 55.000 0.00 0.00 36.33 4.26
913 1060 1.538687 AACATGCCTTTGCCTCTGCC 61.539 55.000 0.00 0.00 36.33 4.85
914 1061 1.681327 CATGCCTTTGCCTCTGCCT 60.681 57.895 0.00 0.00 36.33 4.75
925 1072 1.302832 CTCTGCCTTTTCTGCGGGT 60.303 57.895 0.00 0.00 35.76 5.28
975 1131 6.447162 CATGGAGCGAGACTTGTATATAACA 58.553 40.000 0.00 0.00 35.88 2.41
1037 1195 4.201822 GGCGACCAAGTTCAATTATCTCAC 60.202 45.833 0.00 0.00 0.00 3.51
1089 1255 1.066502 GTCTCCAGCTCCTTCAACCTC 60.067 57.143 0.00 0.00 0.00 3.85
1100 1267 1.410882 CTTCAACCTCCCTCGATCCTC 59.589 57.143 0.00 0.00 0.00 3.71
1531 1717 2.682494 GTGGAGGGGTCCTACGCA 60.682 66.667 4.95 0.00 43.99 5.24
1533 1719 2.682494 GGAGGGGTCCTACGCACA 60.682 66.667 0.00 0.00 31.76 4.57
1534 1720 2.288025 GGAGGGGTCCTACGCACAA 61.288 63.158 0.00 0.00 31.76 3.33
1619 1805 0.036765 CGGGACTGATGTTTTCCGGA 60.037 55.000 0.00 0.00 33.93 5.14
1730 1919 2.370189 AGCTGGTCCACCATAGATTAGC 59.630 50.000 0.00 0.00 46.46 3.09
1899 2115 2.699846 TGATGCCCCCAAAATTATGAGC 59.300 45.455 0.00 0.00 0.00 4.26
1916 2132 2.964464 TGAGCTTTTTCTTGGCCAATGA 59.036 40.909 20.85 15.54 0.00 2.57
1939 2155 1.524482 CTTGCCTCCTCCTACTGCC 59.476 63.158 0.00 0.00 0.00 4.85
1942 2158 1.267574 TGCCTCCTCCTACTGCCTTG 61.268 60.000 0.00 0.00 0.00 3.61
2052 2271 1.667236 TTGCATATGGTTCAGCTCGG 58.333 50.000 4.56 0.00 0.00 4.63
2079 2303 5.107683 GCCTCGATCGAGATAACATTTTCTG 60.108 44.000 39.64 21.72 44.53 3.02
2137 3454 7.600467 ACGTACAATTCGTATTTCGTAGATC 57.400 36.000 0.00 0.00 39.78 2.75
2188 3505 2.169832 AAAGGATCGCCCATATCACG 57.830 50.000 0.00 0.00 37.41 4.35
2200 3552 4.095782 GCCCATATCACGAGAGAGATCTAC 59.904 50.000 0.00 0.00 40.61 2.59
2203 3555 5.123186 CCATATCACGAGAGAGATCTACACC 59.877 48.000 0.00 0.00 40.61 4.16
2207 3559 2.226330 CGAGAGAGATCTACACCTGGG 58.774 57.143 0.00 0.00 0.00 4.45
2273 3625 2.373540 TGTCATAGTTTTCCGGACCG 57.626 50.000 1.83 6.99 0.00 4.79
2284 3636 2.731571 CCGGACCGGTGATCATGGT 61.732 63.158 25.54 19.26 42.73 3.55
2289 3641 2.696707 GGACCGGTGATCATGGTAGTTA 59.303 50.000 14.63 0.00 35.75 2.24
2291 3643 4.202326 GGACCGGTGATCATGGTAGTTAAT 60.202 45.833 14.63 0.00 35.75 1.40
2310 3662 0.393448 TGTTTTCATCGGTCGGACCA 59.607 50.000 25.80 13.80 38.47 4.02
2311 3663 0.794473 GTTTTCATCGGTCGGACCAC 59.206 55.000 25.80 11.35 38.47 4.16
2338 3695 1.062587 GTCTGGTTTGATGCCGATTCG 59.937 52.381 0.00 0.00 0.00 3.34
2349 3706 0.028110 GCCGATTCGAGGTGCAATTC 59.972 55.000 7.83 0.00 0.00 2.17
2465 3825 0.471211 TCGGCCTCTAACCCCTATGG 60.471 60.000 0.00 0.00 41.37 2.74
2471 3831 0.345502 TCTAACCCCTATGGCCTGGT 59.654 55.000 3.32 0.00 37.83 4.00
2473 3833 1.143073 CTAACCCCTATGGCCTGGTTC 59.857 57.143 3.32 0.00 41.22 3.62
2496 3856 3.309138 CGATTCTCTTGAGAAGCACATGG 59.691 47.826 22.78 7.47 34.23 3.66
2507 3867 7.517614 TGAGAAGCACATGGTTACAAAATTA 57.482 32.000 0.00 0.00 35.69 1.40
2509 3869 9.237187 TGAGAAGCACATGGTTACAAAATTATA 57.763 29.630 0.00 0.00 35.69 0.98
2510 3870 9.722056 GAGAAGCACATGGTTACAAAATTATAG 57.278 33.333 0.00 0.00 35.69 1.31
2511 3871 8.190784 AGAAGCACATGGTTACAAAATTATAGC 58.809 33.333 0.00 0.00 35.69 2.97
2512 3872 6.805713 AGCACATGGTTACAAAATTATAGCC 58.194 36.000 0.00 0.00 0.00 3.93
2514 3874 6.697019 GCACATGGTTACAAAATTATAGCCTG 59.303 38.462 0.00 0.00 0.00 4.85
2554 3920 4.785453 CTTGGCCCAGCGAGACCC 62.785 72.222 0.00 0.00 0.00 4.46
2574 3940 1.806542 CCTATCGCATTATGTGGTGGC 59.193 52.381 5.89 0.00 0.00 5.01
2638 4005 2.291282 TGGAAGGAATAAACATGGCCGT 60.291 45.455 0.00 0.00 0.00 5.68
2647 4014 3.418684 AAACATGGCCGTCTTTAGACT 57.581 42.857 0.00 0.00 42.66 3.24
2704 4071 5.699143 AGCCAATAGGTGATGCTTTATTCT 58.301 37.500 0.00 0.00 37.19 2.40
2705 4072 6.131961 AGCCAATAGGTGATGCTTTATTCTT 58.868 36.000 0.00 0.00 37.19 2.52
2706 4073 6.608808 AGCCAATAGGTGATGCTTTATTCTTT 59.391 34.615 0.00 0.00 37.19 2.52
2707 4074 7.779798 AGCCAATAGGTGATGCTTTATTCTTTA 59.220 33.333 0.00 0.00 37.19 1.85
2708 4075 8.579863 GCCAATAGGTGATGCTTTATTCTTTAT 58.420 33.333 0.00 0.00 37.19 1.40
2709 4076 9.903682 CCAATAGGTGATGCTTTATTCTTTATG 57.096 33.333 0.00 0.00 0.00 1.90
2713 4080 8.814038 AGGTGATGCTTTATTCTTTATGAACT 57.186 30.769 0.00 0.00 37.52 3.01
2714 4081 9.247861 AGGTGATGCTTTATTCTTTATGAACTT 57.752 29.630 0.00 0.00 37.52 2.66
2732 4099 7.953158 TGAACTTAATACTCTAGATGCATGC 57.047 36.000 11.82 11.82 0.00 4.06
2733 4100 7.730084 TGAACTTAATACTCTAGATGCATGCT 58.270 34.615 20.33 4.11 0.00 3.79
2734 4101 7.654923 TGAACTTAATACTCTAGATGCATGCTG 59.345 37.037 20.33 4.23 0.00 4.41
2735 4102 6.462500 ACTTAATACTCTAGATGCATGCTGG 58.538 40.000 20.33 3.51 0.00 4.85
2736 4103 6.268617 ACTTAATACTCTAGATGCATGCTGGA 59.731 38.462 20.33 7.90 0.00 3.86
2737 4104 5.758790 AATACTCTAGATGCATGCTGGAT 57.241 39.130 20.33 3.62 0.00 3.41
2738 4105 6.864151 AATACTCTAGATGCATGCTGGATA 57.136 37.500 20.33 5.84 0.00 2.59
2739 4106 4.804868 ACTCTAGATGCATGCTGGATAG 57.195 45.455 20.33 14.76 0.00 2.08
2749 4116 3.802613 GCTGGATAGCGATCGATGT 57.197 52.632 21.57 11.79 40.67 3.06
2750 4117 1.344458 GCTGGATAGCGATCGATGTG 58.656 55.000 21.57 0.00 40.67 3.21
2751 4118 1.336332 GCTGGATAGCGATCGATGTGT 60.336 52.381 21.57 3.06 40.67 3.72
2752 4119 2.323059 CTGGATAGCGATCGATGTGTG 58.677 52.381 21.57 0.00 32.28 3.82
2753 4120 1.000274 TGGATAGCGATCGATGTGTGG 60.000 52.381 21.57 0.00 32.28 4.17
2754 4121 1.269723 GGATAGCGATCGATGTGTGGA 59.730 52.381 21.57 0.00 32.28 4.02
2755 4122 2.590073 GATAGCGATCGATGTGTGGAG 58.410 52.381 21.57 0.00 0.00 3.86
2756 4123 1.389555 TAGCGATCGATGTGTGGAGT 58.610 50.000 21.57 0.00 0.00 3.85
2757 4124 1.389555 AGCGATCGATGTGTGGAGTA 58.610 50.000 21.57 0.00 0.00 2.59
2758 4125 1.749063 AGCGATCGATGTGTGGAGTAA 59.251 47.619 21.57 0.00 0.00 2.24
2759 4126 2.362397 AGCGATCGATGTGTGGAGTAAT 59.638 45.455 21.57 0.00 0.00 1.89
2760 4127 3.568430 AGCGATCGATGTGTGGAGTAATA 59.432 43.478 21.57 0.00 0.00 0.98
2761 4128 3.914966 GCGATCGATGTGTGGAGTAATAG 59.085 47.826 21.57 0.00 0.00 1.73
2762 4129 4.556898 GCGATCGATGTGTGGAGTAATAGT 60.557 45.833 21.57 0.00 0.00 2.12
2763 4130 5.334646 GCGATCGATGTGTGGAGTAATAGTA 60.335 44.000 21.57 0.00 0.00 1.82
2764 4131 6.307915 CGATCGATGTGTGGAGTAATAGTAG 58.692 44.000 10.26 0.00 0.00 2.57
2765 4132 6.073167 CGATCGATGTGTGGAGTAATAGTAGT 60.073 42.308 10.26 0.00 0.00 2.73
2766 4133 7.117379 CGATCGATGTGTGGAGTAATAGTAGTA 59.883 40.741 10.26 0.00 0.00 1.82
2767 4134 7.725818 TCGATGTGTGGAGTAATAGTAGTAG 57.274 40.000 0.00 0.00 0.00 2.57
2768 4135 7.503549 TCGATGTGTGGAGTAATAGTAGTAGA 58.496 38.462 0.00 0.00 0.00 2.59
2769 4136 8.155510 TCGATGTGTGGAGTAATAGTAGTAGAT 58.844 37.037 0.00 0.00 0.00 1.98
2770 4137 8.784994 CGATGTGTGGAGTAATAGTAGTAGATT 58.215 37.037 0.00 0.00 0.00 2.40
2772 4139 9.642343 ATGTGTGGAGTAATAGTAGTAGATTCA 57.358 33.333 0.00 0.00 0.00 2.57
2773 4140 9.121658 TGTGTGGAGTAATAGTAGTAGATTCAG 57.878 37.037 0.00 0.00 0.00 3.02
2774 4141 9.339850 GTGTGGAGTAATAGTAGTAGATTCAGA 57.660 37.037 0.00 0.00 0.00 3.27
2775 4142 9.916360 TGTGGAGTAATAGTAGTAGATTCAGAA 57.084 33.333 0.00 0.00 0.00 3.02
2783 4150 9.666626 AATAGTAGTAGATTCAGAATCGTTTCG 57.333 33.333 16.09 0.00 42.75 3.46
2784 4151 6.496571 AGTAGTAGATTCAGAATCGTTTCGG 58.503 40.000 16.09 0.62 42.75 4.30
2785 4152 5.326200 AGTAGATTCAGAATCGTTTCGGT 57.674 39.130 16.09 1.50 42.75 4.69
2786 4153 5.341617 AGTAGATTCAGAATCGTTTCGGTC 58.658 41.667 16.09 4.06 42.75 4.79
2787 4154 4.457834 AGATTCAGAATCGTTTCGGTCT 57.542 40.909 16.09 1.35 42.75 3.85
2788 4155 5.578005 AGATTCAGAATCGTTTCGGTCTA 57.422 39.130 16.09 0.00 42.75 2.59
2789 4156 5.341617 AGATTCAGAATCGTTTCGGTCTAC 58.658 41.667 16.09 0.00 42.75 2.59
2790 4157 4.778534 TTCAGAATCGTTTCGGTCTACT 57.221 40.909 6.31 0.00 36.93 2.57
2791 4158 4.778534 TCAGAATCGTTTCGGTCTACTT 57.221 40.909 6.31 0.00 36.93 2.24
2792 4159 4.482386 TCAGAATCGTTTCGGTCTACTTG 58.518 43.478 6.31 0.00 36.93 3.16
2793 4160 4.216902 TCAGAATCGTTTCGGTCTACTTGA 59.783 41.667 6.31 0.00 36.93 3.02
2794 4161 4.323868 CAGAATCGTTTCGGTCTACTTGAC 59.676 45.833 0.72 0.00 44.63 3.18
2811 4178 2.577059 CACGGACGTGGTGCCTAT 59.423 61.111 16.46 0.00 42.00 2.57
2812 4179 1.809619 CACGGACGTGGTGCCTATG 60.810 63.158 16.46 0.00 42.00 2.23
2813 4180 2.280552 ACGGACGTGGTGCCTATGT 61.281 57.895 0.00 0.00 0.00 2.29
2814 4181 1.079405 CGGACGTGGTGCCTATGTT 60.079 57.895 0.00 0.00 0.00 2.71
2815 4182 1.082117 CGGACGTGGTGCCTATGTTC 61.082 60.000 0.00 0.00 0.00 3.18
2816 4183 0.036765 GGACGTGGTGCCTATGTTCA 60.037 55.000 0.00 0.00 0.00 3.18
2817 4184 1.406887 GGACGTGGTGCCTATGTTCAT 60.407 52.381 0.00 0.00 0.00 2.57
2818 4185 1.665679 GACGTGGTGCCTATGTTCATG 59.334 52.381 0.00 0.00 0.00 3.07
2819 4186 1.277842 ACGTGGTGCCTATGTTCATGA 59.722 47.619 0.00 0.00 0.00 3.07
2820 4187 2.092968 ACGTGGTGCCTATGTTCATGAT 60.093 45.455 0.00 0.00 0.00 2.45
2821 4188 2.545526 CGTGGTGCCTATGTTCATGATC 59.454 50.000 0.00 0.00 0.00 2.92
2822 4189 3.544684 GTGGTGCCTATGTTCATGATCA 58.455 45.455 8.86 8.86 0.00 2.92
2823 4190 4.139786 GTGGTGCCTATGTTCATGATCAT 58.860 43.478 20.22 20.22 0.00 2.45
2824 4191 4.581824 GTGGTGCCTATGTTCATGATCATT 59.418 41.667 21.27 8.61 0.00 2.57
2825 4192 4.581409 TGGTGCCTATGTTCATGATCATTG 59.419 41.667 21.27 18.73 0.00 2.82
2826 4193 4.543692 GTGCCTATGTTCATGATCATTGC 58.456 43.478 21.27 21.72 0.00 3.56
2827 4194 3.570975 TGCCTATGTTCATGATCATTGCC 59.429 43.478 21.27 11.93 0.00 4.52
2828 4195 3.825014 GCCTATGTTCATGATCATTGCCT 59.175 43.478 21.27 3.80 0.00 4.75
2829 4196 4.280174 GCCTATGTTCATGATCATTGCCTT 59.720 41.667 21.27 3.16 0.00 4.35
2830 4197 5.474532 GCCTATGTTCATGATCATTGCCTTA 59.525 40.000 21.27 4.92 0.00 2.69
2831 4198 6.349115 GCCTATGTTCATGATCATTGCCTTAG 60.349 42.308 21.27 12.66 0.00 2.18
2832 4199 6.938596 CCTATGTTCATGATCATTGCCTTAGA 59.061 38.462 21.27 0.00 0.00 2.10
2833 4200 7.610692 CCTATGTTCATGATCATTGCCTTAGAT 59.389 37.037 21.27 0.00 0.00 1.98
2834 4201 9.662947 CTATGTTCATGATCATTGCCTTAGATA 57.337 33.333 21.27 2.48 0.00 1.98
2836 4203 8.557592 TGTTCATGATCATTGCCTTAGATATC 57.442 34.615 5.16 0.00 0.00 1.63
2837 4204 7.332678 TGTTCATGATCATTGCCTTAGATATCG 59.667 37.037 5.16 0.00 0.00 2.92
2838 4205 6.939622 TCATGATCATTGCCTTAGATATCGT 58.060 36.000 5.16 0.00 0.00 3.73
2839 4206 7.038048 TCATGATCATTGCCTTAGATATCGTC 58.962 38.462 5.16 0.00 0.00 4.20
2840 4207 6.345096 TGATCATTGCCTTAGATATCGTCA 57.655 37.500 0.00 0.00 0.00 4.35
2841 4208 6.939622 TGATCATTGCCTTAGATATCGTCAT 58.060 36.000 0.00 0.00 0.00 3.06
2842 4209 8.066612 TGATCATTGCCTTAGATATCGTCATA 57.933 34.615 0.00 0.00 0.00 2.15
2843 4210 8.531146 TGATCATTGCCTTAGATATCGTCATAA 58.469 33.333 0.00 0.00 0.00 1.90
2844 4211 8.709386 ATCATTGCCTTAGATATCGTCATAAC 57.291 34.615 0.00 0.00 0.00 1.89
2845 4212 7.896811 TCATTGCCTTAGATATCGTCATAACT 58.103 34.615 0.00 0.00 0.00 2.24
2846 4213 8.367911 TCATTGCCTTAGATATCGTCATAACTT 58.632 33.333 0.00 0.00 0.00 2.66
2847 4214 8.993121 CATTGCCTTAGATATCGTCATAACTTT 58.007 33.333 0.00 0.00 0.00 2.66
2848 4215 7.946655 TGCCTTAGATATCGTCATAACTTTG 57.053 36.000 0.00 0.00 0.00 2.77
2849 4216 6.423905 TGCCTTAGATATCGTCATAACTTTGC 59.576 38.462 0.00 0.00 0.00 3.68
2850 4217 6.400091 GCCTTAGATATCGTCATAACTTTGCG 60.400 42.308 0.00 0.00 0.00 4.85
2851 4218 4.974103 AGATATCGTCATAACTTTGCGC 57.026 40.909 0.00 0.00 0.00 6.09
2852 4219 4.621991 AGATATCGTCATAACTTTGCGCT 58.378 39.130 9.73 0.00 0.00 5.92
2853 4220 5.050490 AGATATCGTCATAACTTTGCGCTT 58.950 37.500 9.73 0.00 0.00 4.68
2854 4221 5.523916 AGATATCGTCATAACTTTGCGCTTT 59.476 36.000 9.73 0.00 0.00 3.51
2855 4222 3.889196 TCGTCATAACTTTGCGCTTTT 57.111 38.095 9.73 0.00 0.00 2.27
2856 4223 3.805823 TCGTCATAACTTTGCGCTTTTC 58.194 40.909 9.73 0.00 0.00 2.29
2857 4224 3.496884 TCGTCATAACTTTGCGCTTTTCT 59.503 39.130 9.73 0.00 0.00 2.52
2858 4225 4.687018 TCGTCATAACTTTGCGCTTTTCTA 59.313 37.500 9.73 0.00 0.00 2.10
2859 4226 5.350365 TCGTCATAACTTTGCGCTTTTCTAT 59.650 36.000 9.73 0.00 0.00 1.98
2860 4227 5.672856 CGTCATAACTTTGCGCTTTTCTATC 59.327 40.000 9.73 0.00 0.00 2.08
2861 4228 6.542852 GTCATAACTTTGCGCTTTTCTATCA 58.457 36.000 9.73 0.00 0.00 2.15
2862 4229 7.021196 GTCATAACTTTGCGCTTTTCTATCAA 58.979 34.615 9.73 0.00 0.00 2.57
2863 4230 7.698130 GTCATAACTTTGCGCTTTTCTATCAAT 59.302 33.333 9.73 0.00 0.00 2.57
2864 4231 8.243426 TCATAACTTTGCGCTTTTCTATCAATT 58.757 29.630 9.73 0.00 0.00 2.32
2865 4232 6.695292 AACTTTGCGCTTTTCTATCAATTG 57.305 33.333 9.73 0.00 0.00 2.32
2866 4233 4.622740 ACTTTGCGCTTTTCTATCAATTGC 59.377 37.500 9.73 0.00 0.00 3.56
2867 4234 4.439305 TTGCGCTTTTCTATCAATTGCT 57.561 36.364 9.73 0.00 0.00 3.91
2868 4235 4.019919 TGCGCTTTTCTATCAATTGCTC 57.980 40.909 9.73 0.00 0.00 4.26
2869 4236 3.031812 GCGCTTTTCTATCAATTGCTCG 58.968 45.455 0.00 0.00 0.00 5.03
2870 4237 3.611517 CGCTTTTCTATCAATTGCTCGG 58.388 45.455 0.00 0.00 0.00 4.63
2871 4238 3.366719 GCTTTTCTATCAATTGCTCGGC 58.633 45.455 0.00 0.00 0.00 5.54
2872 4239 3.181497 GCTTTTCTATCAATTGCTCGGCA 60.181 43.478 0.00 0.00 36.47 5.69
2873 4240 4.595116 CTTTTCTATCAATTGCTCGGCAG 58.405 43.478 0.00 0.00 40.61 4.85
2874 4241 2.988010 TCTATCAATTGCTCGGCAGT 57.012 45.000 0.00 0.00 40.61 4.40
2875 4242 4.400529 TTCTATCAATTGCTCGGCAGTA 57.599 40.909 0.00 0.00 40.61 2.74
2876 4243 4.400529 TCTATCAATTGCTCGGCAGTAA 57.599 40.909 0.00 0.00 40.61 2.24
2877 4244 4.960938 TCTATCAATTGCTCGGCAGTAAT 58.039 39.130 0.00 0.00 40.61 1.89
2878 4245 5.368145 TCTATCAATTGCTCGGCAGTAATT 58.632 37.500 0.00 7.01 43.52 1.40
2879 4246 4.989279 ATCAATTGCTCGGCAGTAATTT 57.011 36.364 0.00 0.00 40.85 1.82
2880 4247 4.095410 TCAATTGCTCGGCAGTAATTTG 57.905 40.909 0.00 6.80 40.85 2.32
2881 4248 3.505680 TCAATTGCTCGGCAGTAATTTGT 59.494 39.130 0.00 0.00 40.85 2.83
2882 4249 4.022416 TCAATTGCTCGGCAGTAATTTGTT 60.022 37.500 0.00 0.00 40.85 2.83
2883 4250 3.552604 TTGCTCGGCAGTAATTTGTTC 57.447 42.857 0.00 0.00 40.61 3.18
2884 4251 2.499197 TGCTCGGCAGTAATTTGTTCA 58.501 42.857 0.00 0.00 33.32 3.18
2885 4252 2.225491 TGCTCGGCAGTAATTTGTTCAC 59.775 45.455 0.00 0.00 33.32 3.18
2886 4253 2.414161 GCTCGGCAGTAATTTGTTCACC 60.414 50.000 0.00 0.00 0.00 4.02
2887 4254 2.156098 TCGGCAGTAATTTGTTCACCC 58.844 47.619 0.00 0.00 0.00 4.61
2888 4255 1.883275 CGGCAGTAATTTGTTCACCCA 59.117 47.619 0.00 0.00 0.00 4.51
2889 4256 2.351350 CGGCAGTAATTTGTTCACCCAC 60.351 50.000 0.00 0.00 0.00 4.61
2890 4257 2.029380 GGCAGTAATTTGTTCACCCACC 60.029 50.000 0.00 0.00 0.00 4.61
2891 4258 2.351350 GCAGTAATTTGTTCACCCACCG 60.351 50.000 0.00 0.00 0.00 4.94
2892 4259 2.882137 CAGTAATTTGTTCACCCACCGT 59.118 45.455 0.00 0.00 0.00 4.83
2893 4260 2.882137 AGTAATTTGTTCACCCACCGTG 59.118 45.455 0.00 0.00 44.50 4.94
2901 4268 1.745232 TCACCCACCGTGATATTTGC 58.255 50.000 0.00 0.00 46.80 3.68
2902 4269 1.280710 TCACCCACCGTGATATTTGCT 59.719 47.619 0.00 0.00 46.80 3.91
2903 4270 2.502130 TCACCCACCGTGATATTTGCTA 59.498 45.455 0.00 0.00 46.80 3.49
2904 4271 3.135712 TCACCCACCGTGATATTTGCTAT 59.864 43.478 0.00 0.00 46.80 2.97
2905 4272 3.498397 CACCCACCGTGATATTTGCTATC 59.502 47.826 0.00 0.00 46.20 2.08
2906 4273 3.391296 ACCCACCGTGATATTTGCTATCT 59.609 43.478 0.00 0.00 37.67 1.98
2907 4274 4.141482 ACCCACCGTGATATTTGCTATCTT 60.141 41.667 0.00 0.00 37.67 2.40
2908 4275 4.214119 CCCACCGTGATATTTGCTATCTTG 59.786 45.833 0.00 0.00 37.67 3.02
2909 4276 5.056480 CCACCGTGATATTTGCTATCTTGA 58.944 41.667 0.00 0.00 37.67 3.02
2910 4277 5.178252 CCACCGTGATATTTGCTATCTTGAG 59.822 44.000 0.00 0.00 37.67 3.02
2911 4278 5.985530 CACCGTGATATTTGCTATCTTGAGA 59.014 40.000 0.00 0.00 37.67 3.27
2912 4279 6.145209 CACCGTGATATTTGCTATCTTGAGAG 59.855 42.308 0.00 0.00 37.67 3.20
2913 4280 6.040955 ACCGTGATATTTGCTATCTTGAGAGA 59.959 38.462 0.00 0.00 37.67 3.10
2914 4281 6.925718 CCGTGATATTTGCTATCTTGAGAGAA 59.074 38.462 0.00 0.00 37.67 2.87
2915 4282 7.439356 CCGTGATATTTGCTATCTTGAGAGAAA 59.561 37.037 0.00 0.00 37.67 2.52
2916 4283 8.272176 CGTGATATTTGCTATCTTGAGAGAAAC 58.728 37.037 0.00 0.00 37.67 2.78
2917 4284 8.555361 GTGATATTTGCTATCTTGAGAGAAACC 58.445 37.037 0.00 0.00 37.67 3.27
2918 4285 8.267183 TGATATTTGCTATCTTGAGAGAAACCA 58.733 33.333 0.00 0.00 37.67 3.67
2919 4286 6.749923 ATTTGCTATCTTGAGAGAAACCAC 57.250 37.500 0.00 0.00 35.07 4.16
2920 4287 5.489792 TTGCTATCTTGAGAGAAACCACT 57.510 39.130 0.00 0.00 35.07 4.00
2921 4288 6.605471 TTGCTATCTTGAGAGAAACCACTA 57.395 37.500 0.00 0.00 35.07 2.74
2922 4289 6.214191 TGCTATCTTGAGAGAAACCACTAG 57.786 41.667 0.00 0.00 35.07 2.57
2923 4290 5.717178 TGCTATCTTGAGAGAAACCACTAGT 59.283 40.000 0.00 0.00 35.07 2.57
2924 4291 6.039616 GCTATCTTGAGAGAAACCACTAGTG 58.960 44.000 16.34 16.34 35.07 2.74
2925 4292 6.127591 GCTATCTTGAGAGAAACCACTAGTGA 60.128 42.308 24.68 0.00 35.07 3.41
2926 4293 6.672266 ATCTTGAGAGAAACCACTAGTGAA 57.328 37.500 24.68 6.10 35.07 3.18
2927 4294 6.479972 TCTTGAGAGAAACCACTAGTGAAA 57.520 37.500 24.68 3.74 0.00 2.69
2928 4295 6.281405 TCTTGAGAGAAACCACTAGTGAAAC 58.719 40.000 24.68 11.86 0.00 2.78
2929 4296 7.202047 ATCTTGAGAGAAACCACTAGTGAAACT 60.202 37.037 24.68 16.01 43.03 2.66
2941 4308 1.474330 GTGAAACTTATGGCCCCTGG 58.526 55.000 0.00 0.00 0.00 4.45
2942 4309 0.334676 TGAAACTTATGGCCCCTGGG 59.665 55.000 5.50 5.50 38.57 4.45
2943 4310 0.335019 GAAACTTATGGCCCCTGGGT 59.665 55.000 12.71 0.00 37.65 4.51
2944 4311 0.335019 AAACTTATGGCCCCTGGGTC 59.665 55.000 12.71 0.00 41.01 4.46
2945 4312 0.552615 AACTTATGGCCCCTGGGTCT 60.553 55.000 12.71 0.00 41.25 3.85
2946 4313 0.988678 ACTTATGGCCCCTGGGTCTC 60.989 60.000 12.71 1.08 41.25 3.36
2947 4314 0.695803 CTTATGGCCCCTGGGTCTCT 60.696 60.000 12.71 0.00 41.25 3.10
2948 4315 0.253630 TTATGGCCCCTGGGTCTCTT 60.254 55.000 12.71 1.90 41.25 2.85
2949 4316 0.253630 TATGGCCCCTGGGTCTCTTT 60.254 55.000 12.71 0.00 41.25 2.52
2950 4317 1.149133 ATGGCCCCTGGGTCTCTTTT 61.149 55.000 12.71 0.00 41.25 2.27
2951 4318 1.000771 GGCCCCTGGGTCTCTTTTC 60.001 63.158 12.71 0.00 36.84 2.29
2952 4319 1.000771 GCCCCTGGGTCTCTTTTCC 60.001 63.158 12.71 0.00 37.65 3.13
2953 4320 1.789576 GCCCCTGGGTCTCTTTTCCA 61.790 60.000 12.71 0.00 37.65 3.53
2954 4321 1.002857 CCCCTGGGTCTCTTTTCCAT 58.997 55.000 12.71 0.00 0.00 3.41
2955 4322 1.359130 CCCCTGGGTCTCTTTTCCATT 59.641 52.381 12.71 0.00 0.00 3.16
2956 4323 2.225369 CCCCTGGGTCTCTTTTCCATTT 60.225 50.000 12.71 0.00 0.00 2.32
2957 4324 3.510459 CCCTGGGTCTCTTTTCCATTTT 58.490 45.455 3.97 0.00 0.00 1.82
2958 4325 4.510205 CCCCTGGGTCTCTTTTCCATTTTA 60.510 45.833 12.71 0.00 0.00 1.52
2959 4326 5.272402 CCCTGGGTCTCTTTTCCATTTTAT 58.728 41.667 3.97 0.00 0.00 1.40
2960 4327 5.721480 CCCTGGGTCTCTTTTCCATTTTATT 59.279 40.000 3.97 0.00 0.00 1.40
2961 4328 6.351286 CCCTGGGTCTCTTTTCCATTTTATTG 60.351 42.308 3.97 0.00 0.00 1.90
2962 4329 6.437162 CCTGGGTCTCTTTTCCATTTTATTGA 59.563 38.462 0.00 0.00 0.00 2.57
2963 4330 7.039082 CCTGGGTCTCTTTTCCATTTTATTGAA 60.039 37.037 0.00 0.00 0.00 2.69
2964 4331 8.434589 TGGGTCTCTTTTCCATTTTATTGAAT 57.565 30.769 0.00 0.00 0.00 2.57
2965 4332 8.531146 TGGGTCTCTTTTCCATTTTATTGAATC 58.469 33.333 0.00 0.00 0.00 2.52
2966 4333 8.753133 GGGTCTCTTTTCCATTTTATTGAATCT 58.247 33.333 0.00 0.00 0.00 2.40
2967 4334 9.794685 GGTCTCTTTTCCATTTTATTGAATCTC 57.205 33.333 0.00 0.00 0.00 2.75
3004 4371 8.997621 ACTAGTTTTCGATCTACTATTTTGCA 57.002 30.769 0.00 0.00 0.00 4.08
3005 4372 9.431887 ACTAGTTTTCGATCTACTATTTTGCAA 57.568 29.630 0.00 0.00 0.00 4.08
3007 4374 8.950403 AGTTTTCGATCTACTATTTTGCAAAC 57.050 30.769 12.39 0.00 0.00 2.93
3008 4375 8.784043 AGTTTTCGATCTACTATTTTGCAAACT 58.216 29.630 12.39 9.52 0.00 2.66
3009 4376 9.394477 GTTTTCGATCTACTATTTTGCAAACTT 57.606 29.630 12.39 5.19 0.00 2.66
3010 4377 9.959749 TTTTCGATCTACTATTTTGCAAACTTT 57.040 25.926 12.39 2.53 0.00 2.66
3011 4378 9.959749 TTTCGATCTACTATTTTGCAAACTTTT 57.040 25.926 12.39 0.00 0.00 2.27
3019 4386 8.871686 ACTATTTTGCAAACTTTTACTTCCTG 57.128 30.769 12.39 0.00 0.00 3.86
3020 4387 8.691797 ACTATTTTGCAAACTTTTACTTCCTGA 58.308 29.630 12.39 0.00 0.00 3.86
3021 4388 9.696917 CTATTTTGCAAACTTTTACTTCCTGAT 57.303 29.630 12.39 0.00 0.00 2.90
3022 4389 8.593492 ATTTTGCAAACTTTTACTTCCTGATC 57.407 30.769 12.39 0.00 0.00 2.92
3023 4390 6.959639 TTGCAAACTTTTACTTCCTGATCT 57.040 33.333 0.00 0.00 0.00 2.75
3024 4391 8.458573 TTTGCAAACTTTTACTTCCTGATCTA 57.541 30.769 8.05 0.00 0.00 1.98
3025 4392 8.635765 TTGCAAACTTTTACTTCCTGATCTAT 57.364 30.769 0.00 0.00 0.00 1.98
3026 4393 9.733556 TTGCAAACTTTTACTTCCTGATCTATA 57.266 29.630 0.00 0.00 0.00 1.31
3027 4394 9.733556 TGCAAACTTTTACTTCCTGATCTATAA 57.266 29.630 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 177 3.148412 CCATGCCGATAACATTCCATCA 58.852 45.455 0.00 0.00 0.00 3.07
263 270 0.250901 CAGGCTTTGGGTGTGCTAGT 60.251 55.000 0.00 0.00 0.00 2.57
316 323 2.125065 ACGCACACCACCACGAAA 60.125 55.556 0.00 0.00 0.00 3.46
347 354 9.148104 ACATAAAACTATTCGGAGTTCACTAAC 57.852 33.333 0.00 0.00 38.75 2.34
359 366 4.107622 ACCCGTCGACATAAAACTATTCG 58.892 43.478 17.16 0.00 0.00 3.34
413 420 3.312697 GCTTTTCAAGGTTATCTAGGCCG 59.687 47.826 0.00 0.00 0.00 6.13
416 423 7.770897 ACAGTATGCTTTTCAAGGTTATCTAGG 59.229 37.037 0.00 0.00 42.53 3.02
457 464 0.882042 CGCATCCGGCAGATTAAGCT 60.882 55.000 0.00 0.00 45.17 3.74
458 465 1.571460 CGCATCCGGCAGATTAAGC 59.429 57.895 0.00 0.00 45.17 3.09
471 478 1.775039 TTTAGCTCGCATGCCGCATC 61.775 55.000 23.51 5.84 42.60 3.91
472 479 1.168407 ATTTAGCTCGCATGCCGCAT 61.168 50.000 23.51 0.00 42.60 4.73
473 480 1.775039 GATTTAGCTCGCATGCCGCA 61.775 55.000 23.51 0.00 42.60 5.69
474 481 1.082496 GATTTAGCTCGCATGCCGC 60.082 57.895 13.15 15.11 36.73 6.53
475 482 0.234106 CAGATTTAGCTCGCATGCCG 59.766 55.000 13.15 7.68 38.61 5.69
476 483 0.590195 CCAGATTTAGCTCGCATGCC 59.410 55.000 13.15 0.00 0.00 4.40
477 484 0.040603 GCCAGATTTAGCTCGCATGC 60.041 55.000 7.91 7.91 0.00 4.06
478 485 0.234106 CGCCAGATTTAGCTCGCATG 59.766 55.000 0.00 0.00 0.00 4.06
561 596 9.643693 ACAGAAACCATTAATTTTGCAATCTAG 57.356 29.630 0.00 0.00 0.00 2.43
591 626 3.955551 TCTTTGAAACTAGGGGCGTTTTT 59.044 39.130 0.00 0.00 34.94 1.94
592 627 3.558033 TCTTTGAAACTAGGGGCGTTTT 58.442 40.909 0.00 0.00 34.94 2.43
594 629 2.943036 TCTTTGAAACTAGGGGCGTT 57.057 45.000 0.00 0.00 0.00 4.84
596 631 3.818773 TCTTTTCTTTGAAACTAGGGGCG 59.181 43.478 0.00 0.00 0.00 6.13
651 686 3.753272 TGCTATTTCTGTGAGTTTGCCTC 59.247 43.478 0.00 0.00 40.89 4.70
654 689 5.464168 ACAATGCTATTTCTGTGAGTTTGC 58.536 37.500 0.00 0.00 0.00 3.68
655 690 6.364165 CCAACAATGCTATTTCTGTGAGTTTG 59.636 38.462 0.00 0.00 0.00 2.93
656 691 6.040842 ACCAACAATGCTATTTCTGTGAGTTT 59.959 34.615 0.00 0.00 0.00 2.66
657 692 5.536161 ACCAACAATGCTATTTCTGTGAGTT 59.464 36.000 0.00 0.00 0.00 3.01
659 694 5.633830 ACCAACAATGCTATTTCTGTGAG 57.366 39.130 0.00 0.00 0.00 3.51
660 695 6.371548 GTCTACCAACAATGCTATTTCTGTGA 59.628 38.462 0.00 0.00 0.00 3.58
661 696 6.149308 TGTCTACCAACAATGCTATTTCTGTG 59.851 38.462 0.00 0.00 0.00 3.66
662 697 6.237901 TGTCTACCAACAATGCTATTTCTGT 58.762 36.000 0.00 0.00 0.00 3.41
664 699 9.277783 GATATGTCTACCAACAATGCTATTTCT 57.722 33.333 0.00 0.00 31.81 2.52
667 790 9.224267 GATGATATGTCTACCAACAATGCTATT 57.776 33.333 0.00 0.00 31.81 1.73
691 814 8.551440 TGCTGGCATGTATAGATAAATTAGGAT 58.449 33.333 0.00 0.00 0.00 3.24
703 830 6.035368 ACTAGAGAATGCTGGCATGTATAG 57.965 41.667 8.91 11.87 36.68 1.31
741 876 2.666190 GGCTGCACGCAAGACTGA 60.666 61.111 0.50 0.00 41.67 3.41
742 877 1.859427 AATGGCTGCACGCAAGACTG 61.859 55.000 0.50 0.00 41.67 3.51
743 878 1.174712 AAATGGCTGCACGCAAGACT 61.175 50.000 0.50 0.00 41.67 3.24
777 915 3.824133 TCCATCATCGATTGCTTGGAAT 58.176 40.909 11.13 0.00 35.59 3.01
795 933 9.959749 GTACTGTTTTGTTTCTTTTATCATCCA 57.040 29.630 0.00 0.00 0.00 3.41
835 982 1.874345 GCTCAACGACCTCTTCCGGA 61.874 60.000 0.00 0.00 0.00 5.14
909 1056 1.286880 CAACCCGCAGAAAAGGCAG 59.713 57.895 0.00 0.00 0.00 4.85
910 1057 2.855514 GCAACCCGCAGAAAAGGCA 61.856 57.895 0.00 0.00 41.79 4.75
911 1058 2.049156 GCAACCCGCAGAAAAGGC 60.049 61.111 0.00 0.00 41.79 4.35
925 1072 1.896660 GGCCGGAGAAACTGTGCAA 60.897 57.895 5.05 0.00 0.00 4.08
975 1131 1.958288 ATGGAGTCTGGTAGGCTGTT 58.042 50.000 0.00 0.00 24.78 3.16
1024 1182 2.421388 CGGGCTGGGTGAGATAATTGAA 60.421 50.000 0.00 0.00 0.00 2.69
1037 1195 3.082579 GCTGAGTAGTCGGGCTGGG 62.083 68.421 8.49 0.00 0.00 4.45
1100 1267 1.200252 CCTCGCCATGTAGAGGTATCG 59.800 57.143 19.86 1.29 46.68 2.92
1531 1717 1.954146 CACCACGCAGCTACGTTGT 60.954 57.895 9.83 10.05 45.75 3.32
1533 1719 0.665369 GTACACCACGCAGCTACGTT 60.665 55.000 9.83 0.00 45.75 3.99
1899 2115 3.499537 GGCTTTCATTGGCCAAGAAAAAG 59.500 43.478 28.65 28.65 46.84 2.27
1916 2132 0.621082 GTAGGAGGAGGCAAGGCTTT 59.379 55.000 0.00 0.00 0.00 3.51
1939 2155 4.433615 AGAATATACACACCGACAGCAAG 58.566 43.478 0.00 0.00 0.00 4.01
1942 2158 4.868171 TCAAAGAATATACACACCGACAGC 59.132 41.667 0.00 0.00 0.00 4.40
2036 2253 1.224075 CTGCCGAGCTGAACCATATG 58.776 55.000 0.00 0.00 0.00 1.78
2040 2257 4.704833 GGCTGCCGAGCTGAACCA 62.705 66.667 1.35 0.00 45.44 3.67
2052 2271 1.001268 TGTTATCTCGATCGAGGCTGC 60.001 52.381 37.28 26.12 42.20 5.25
2133 3450 6.978659 TCAAATATACAAGAAACTCGCGATCT 59.021 34.615 10.36 7.16 0.00 2.75
2137 3454 8.601243 AAAATCAAATATACAAGAAACTCGCG 57.399 30.769 0.00 0.00 0.00 5.87
2188 3505 1.960689 GCCCAGGTGTAGATCTCTCTC 59.039 57.143 0.00 0.00 32.66 3.20
2200 3552 1.457455 ACAAAAGGGTGCCCAGGTG 60.457 57.895 10.26 6.32 38.92 4.00
2203 3555 1.413118 AAAGACAAAAGGGTGCCCAG 58.587 50.000 10.26 0.00 38.92 4.45
2242 3594 8.969267 CGGAAAACTATGACAAGTAGATATCAC 58.031 37.037 5.32 1.58 0.00 3.06
2243 3595 8.141909 CCGGAAAACTATGACAAGTAGATATCA 58.858 37.037 5.32 0.00 0.00 2.15
2248 3600 5.337009 GGTCCGGAAAACTATGACAAGTAGA 60.337 44.000 5.23 0.00 0.00 2.59
2254 3606 2.373540 CGGTCCGGAAAACTATGACA 57.626 50.000 5.23 0.00 0.00 3.58
2273 3625 8.050778 TGAAAACATTAACTACCATGATCACC 57.949 34.615 0.00 0.00 0.00 4.02
2275 3627 8.611757 CGATGAAAACATTAACTACCATGATCA 58.388 33.333 0.00 0.00 0.00 2.92
2278 3630 6.882140 ACCGATGAAAACATTAACTACCATGA 59.118 34.615 0.00 0.00 0.00 3.07
2280 3632 6.036735 CGACCGATGAAAACATTAACTACCAT 59.963 38.462 0.00 0.00 0.00 3.55
2284 3636 5.577945 GTCCGACCGATGAAAACATTAACTA 59.422 40.000 0.00 0.00 0.00 2.24
2289 3641 2.081462 GGTCCGACCGATGAAAACATT 58.919 47.619 0.65 0.00 0.00 2.71
2291 3643 0.393448 TGGTCCGACCGATGAAAACA 59.607 50.000 13.02 0.00 42.58 2.83
2310 3662 2.494059 CATCAAACCAGACGAACCTGT 58.506 47.619 0.00 0.00 32.43 4.00
2311 3663 1.197721 GCATCAAACCAGACGAACCTG 59.802 52.381 0.00 0.00 0.00 4.00
2465 3825 1.066143 TCAAGAGAATCGGAACCAGGC 60.066 52.381 0.00 0.00 42.67 4.85
2471 3831 3.006859 TGTGCTTCTCAAGAGAATCGGAA 59.993 43.478 12.50 0.00 45.40 4.30
2473 3833 2.964740 TGTGCTTCTCAAGAGAATCGG 58.035 47.619 12.50 3.56 45.40 4.18
2496 3856 8.032451 TGGCTTTTCAGGCTATAATTTTGTAAC 58.968 33.333 0.00 0.00 46.13 2.50
2507 3867 2.435805 TCTCGATGGCTTTTCAGGCTAT 59.564 45.455 0.00 0.00 46.13 2.97
2509 3869 0.615331 TCTCGATGGCTTTTCAGGCT 59.385 50.000 0.00 0.00 46.13 4.58
2510 3870 0.729690 GTCTCGATGGCTTTTCAGGC 59.270 55.000 0.00 0.00 46.16 4.85
2511 3871 2.099141 TGTCTCGATGGCTTTTCAGG 57.901 50.000 0.00 0.00 0.00 3.86
2512 3872 3.124297 GTCTTGTCTCGATGGCTTTTCAG 59.876 47.826 0.00 0.00 0.00 3.02
2514 3874 2.416893 GGTCTTGTCTCGATGGCTTTTC 59.583 50.000 0.00 0.00 0.00 2.29
2519 3884 0.820871 AGAGGTCTTGTCTCGATGGC 59.179 55.000 0.00 0.00 36.45 4.40
2542 3908 2.565645 CGATAGGGGTCTCGCTGGG 61.566 68.421 0.00 0.00 37.38 4.45
2554 3920 1.806542 GCCACCACATAATGCGATAGG 59.193 52.381 0.00 0.00 0.00 2.57
2556 3922 1.419762 AGGCCACCACATAATGCGATA 59.580 47.619 5.01 0.00 0.00 2.92
2574 3940 0.613777 GTGGTGTTCCAGGGTAGAGG 59.386 60.000 0.00 0.00 45.24 3.69
2638 4005 7.938715 AGTCGTTGTTCTTTCTAGTCTAAAGA 58.061 34.615 1.91 1.91 40.33 2.52
2647 4014 7.207383 TCTTCAATGAGTCGTTGTTCTTTCTA 58.793 34.615 21.61 0.59 32.76 2.10
2706 4073 9.645059 GCATGCATCTAGAGTATTAAGTTCATA 57.355 33.333 14.21 0.00 0.00 2.15
2707 4074 8.373981 AGCATGCATCTAGAGTATTAAGTTCAT 58.626 33.333 21.98 0.00 0.00 2.57
2708 4075 7.654923 CAGCATGCATCTAGAGTATTAAGTTCA 59.345 37.037 21.98 0.00 0.00 3.18
2709 4076 7.117523 CCAGCATGCATCTAGAGTATTAAGTTC 59.882 40.741 21.98 0.00 31.97 3.01
2710 4077 6.933521 CCAGCATGCATCTAGAGTATTAAGTT 59.066 38.462 21.98 0.00 31.97 2.66
2711 4078 6.268617 TCCAGCATGCATCTAGAGTATTAAGT 59.731 38.462 21.98 0.00 31.97 2.24
2712 4079 6.695429 TCCAGCATGCATCTAGAGTATTAAG 58.305 40.000 21.98 0.00 31.97 1.85
2713 4080 6.670695 TCCAGCATGCATCTAGAGTATTAA 57.329 37.500 21.98 0.00 31.97 1.40
2714 4081 6.864151 ATCCAGCATGCATCTAGAGTATTA 57.136 37.500 21.98 0.00 31.97 0.98
2715 4082 5.758790 ATCCAGCATGCATCTAGAGTATT 57.241 39.130 21.98 0.00 31.97 1.89
2716 4083 6.468333 CTATCCAGCATGCATCTAGAGTAT 57.532 41.667 21.98 2.66 31.97 2.12
2717 4084 5.911378 CTATCCAGCATGCATCTAGAGTA 57.089 43.478 21.98 0.94 31.97 2.59
2718 4085 4.804868 CTATCCAGCATGCATCTAGAGT 57.195 45.455 21.98 0.00 31.97 3.24
2731 4098 1.336332 ACACATCGATCGCTATCCAGC 60.336 52.381 11.09 0.00 44.90 4.85
2732 4099 2.323059 CACACATCGATCGCTATCCAG 58.677 52.381 11.09 0.00 0.00 3.86
2733 4100 1.000274 CCACACATCGATCGCTATCCA 60.000 52.381 11.09 0.00 0.00 3.41
2734 4101 1.269723 TCCACACATCGATCGCTATCC 59.730 52.381 11.09 0.00 0.00 2.59
2735 4102 2.030717 ACTCCACACATCGATCGCTATC 60.031 50.000 11.09 0.00 0.00 2.08
2736 4103 1.957177 ACTCCACACATCGATCGCTAT 59.043 47.619 11.09 0.00 0.00 2.97
2737 4104 1.389555 ACTCCACACATCGATCGCTA 58.610 50.000 11.09 0.00 0.00 4.26
2738 4105 1.389555 TACTCCACACATCGATCGCT 58.610 50.000 11.09 0.00 0.00 4.93
2739 4106 2.203800 TTACTCCACACATCGATCGC 57.796 50.000 11.09 0.00 0.00 4.58
2740 4107 5.109662 ACTATTACTCCACACATCGATCG 57.890 43.478 9.36 9.36 0.00 3.69
2741 4108 7.204496 ACTACTATTACTCCACACATCGATC 57.796 40.000 0.00 0.00 0.00 3.69
2742 4109 8.155510 TCTACTACTATTACTCCACACATCGAT 58.844 37.037 0.00 0.00 0.00 3.59
2743 4110 7.503549 TCTACTACTATTACTCCACACATCGA 58.496 38.462 0.00 0.00 0.00 3.59
2744 4111 7.725818 TCTACTACTATTACTCCACACATCG 57.274 40.000 0.00 0.00 0.00 3.84
2746 4113 9.642343 TGAATCTACTACTATTACTCCACACAT 57.358 33.333 0.00 0.00 0.00 3.21
2747 4114 9.121658 CTGAATCTACTACTATTACTCCACACA 57.878 37.037 0.00 0.00 0.00 3.72
2748 4115 9.339850 TCTGAATCTACTACTATTACTCCACAC 57.660 37.037 0.00 0.00 0.00 3.82
2749 4116 9.916360 TTCTGAATCTACTACTATTACTCCACA 57.084 33.333 0.00 0.00 0.00 4.17
2757 4124 9.666626 CGAAACGATTCTGAATCTACTACTATT 57.333 33.333 23.67 9.80 35.73 1.73
2758 4125 8.291032 CCGAAACGATTCTGAATCTACTACTAT 58.709 37.037 23.67 5.71 35.73 2.12
2759 4126 7.281774 ACCGAAACGATTCTGAATCTACTACTA 59.718 37.037 23.67 0.00 35.73 1.82
2760 4127 6.095160 ACCGAAACGATTCTGAATCTACTACT 59.905 38.462 23.67 6.45 35.73 2.57
2761 4128 6.264088 ACCGAAACGATTCTGAATCTACTAC 58.736 40.000 23.67 12.46 35.73 2.73
2762 4129 6.318144 AGACCGAAACGATTCTGAATCTACTA 59.682 38.462 23.67 0.00 35.73 1.82
2763 4130 5.125739 AGACCGAAACGATTCTGAATCTACT 59.874 40.000 23.67 10.60 35.73 2.57
2764 4131 5.341617 AGACCGAAACGATTCTGAATCTAC 58.658 41.667 23.67 13.00 35.73 2.59
2765 4132 5.578005 AGACCGAAACGATTCTGAATCTA 57.422 39.130 23.67 0.00 35.73 1.98
2766 4133 4.457834 AGACCGAAACGATTCTGAATCT 57.542 40.909 23.67 9.12 35.73 2.40
2767 4134 5.341617 AGTAGACCGAAACGATTCTGAATC 58.658 41.667 18.28 18.28 33.17 2.52
2768 4135 5.326200 AGTAGACCGAAACGATTCTGAAT 57.674 39.130 1.81 1.81 33.17 2.57
2769 4136 4.778534 AGTAGACCGAAACGATTCTGAA 57.221 40.909 3.93 0.00 33.17 3.02
2770 4137 4.216902 TCAAGTAGACCGAAACGATTCTGA 59.783 41.667 3.93 0.00 33.17 3.27
2771 4138 4.323868 GTCAAGTAGACCGAAACGATTCTG 59.676 45.833 3.81 0.00 41.56 3.02
2772 4139 4.483311 GTCAAGTAGACCGAAACGATTCT 58.517 43.478 3.81 0.00 41.56 2.40
2773 4140 4.819700 GTCAAGTAGACCGAAACGATTC 57.180 45.455 0.00 0.00 41.56 2.52
2785 4152 0.594602 CCACGTCCGTGTCAAGTAGA 59.405 55.000 17.52 0.00 44.02 2.59
2786 4153 0.313043 ACCACGTCCGTGTCAAGTAG 59.687 55.000 17.52 4.15 44.02 2.57
2787 4154 0.031043 CACCACGTCCGTGTCAAGTA 59.969 55.000 17.52 0.00 44.02 2.24
2788 4155 1.227147 CACCACGTCCGTGTCAAGT 60.227 57.895 17.52 6.39 44.02 3.16
2789 4156 2.594962 GCACCACGTCCGTGTCAAG 61.595 63.158 17.52 5.79 44.02 3.02
2790 4157 2.586635 GCACCACGTCCGTGTCAA 60.587 61.111 17.52 0.00 44.02 3.18
2791 4158 4.595538 GGCACCACGTCCGTGTCA 62.596 66.667 17.52 0.00 44.02 3.58
2792 4159 2.221906 ATAGGCACCACGTCCGTGTC 62.222 60.000 17.52 8.51 44.02 3.67
2793 4160 2.280552 ATAGGCACCACGTCCGTGT 61.281 57.895 17.52 4.43 44.02 4.49
2794 4161 1.809619 CATAGGCACCACGTCCGTG 60.810 63.158 12.66 12.66 45.02 4.94
2795 4162 1.823169 AACATAGGCACCACGTCCGT 61.823 55.000 0.00 0.00 0.00 4.69
2796 4163 1.079405 AACATAGGCACCACGTCCG 60.079 57.895 0.00 0.00 0.00 4.79
2797 4164 0.036765 TGAACATAGGCACCACGTCC 60.037 55.000 0.00 0.00 0.00 4.79
2798 4165 1.665679 CATGAACATAGGCACCACGTC 59.334 52.381 0.00 0.00 0.00 4.34
2799 4166 1.277842 TCATGAACATAGGCACCACGT 59.722 47.619 0.00 0.00 0.00 4.49
2800 4167 2.022764 TCATGAACATAGGCACCACG 57.977 50.000 0.00 0.00 0.00 4.94
2801 4168 3.544684 TGATCATGAACATAGGCACCAC 58.455 45.455 0.00 0.00 0.00 4.16
2802 4169 3.929955 TGATCATGAACATAGGCACCA 57.070 42.857 0.00 0.00 0.00 4.17
2803 4170 4.558095 GCAATGATCATGAACATAGGCACC 60.558 45.833 24.90 8.57 31.78 5.01
2804 4171 4.543692 GCAATGATCATGAACATAGGCAC 58.456 43.478 24.90 10.60 31.78 5.01
2805 4172 3.570975 GGCAATGATCATGAACATAGGCA 59.429 43.478 27.99 10.63 32.50 4.75
2806 4173 3.825014 AGGCAATGATCATGAACATAGGC 59.175 43.478 23.20 23.20 0.00 3.93
2807 4174 6.938596 TCTAAGGCAATGATCATGAACATAGG 59.061 38.462 17.73 13.95 0.00 2.57
2808 4175 7.974482 TCTAAGGCAATGATCATGAACATAG 57.026 36.000 17.73 10.86 0.00 2.23
2810 4177 9.175312 GATATCTAAGGCAATGATCATGAACAT 57.825 33.333 12.35 12.35 0.00 2.71
2811 4178 7.332678 CGATATCTAAGGCAATGATCATGAACA 59.667 37.037 9.46 8.23 0.00 3.18
2812 4179 7.332926 ACGATATCTAAGGCAATGATCATGAAC 59.667 37.037 9.46 0.00 0.00 3.18
2813 4180 7.389232 ACGATATCTAAGGCAATGATCATGAA 58.611 34.615 9.46 0.00 0.00 2.57
2814 4181 6.939622 ACGATATCTAAGGCAATGATCATGA 58.060 36.000 9.46 0.00 0.00 3.07
2815 4182 6.815142 TGACGATATCTAAGGCAATGATCATG 59.185 38.462 9.46 4.95 0.00 3.07
2816 4183 6.939622 TGACGATATCTAAGGCAATGATCAT 58.060 36.000 1.18 1.18 0.00 2.45
2817 4184 6.345096 TGACGATATCTAAGGCAATGATCA 57.655 37.500 0.00 0.00 0.00 2.92
2818 4185 8.812329 GTTATGACGATATCTAAGGCAATGATC 58.188 37.037 0.34 0.00 0.00 2.92
2819 4186 8.535335 AGTTATGACGATATCTAAGGCAATGAT 58.465 33.333 0.34 0.00 0.00 2.45
2820 4187 7.896811 AGTTATGACGATATCTAAGGCAATGA 58.103 34.615 0.34 0.00 0.00 2.57
2821 4188 8.539770 AAGTTATGACGATATCTAAGGCAATG 57.460 34.615 0.34 0.00 0.00 2.82
2822 4189 8.993121 CAAAGTTATGACGATATCTAAGGCAAT 58.007 33.333 0.34 0.00 0.00 3.56
2823 4190 7.042051 GCAAAGTTATGACGATATCTAAGGCAA 60.042 37.037 0.34 0.00 0.00 4.52
2824 4191 6.423905 GCAAAGTTATGACGATATCTAAGGCA 59.576 38.462 0.34 0.00 0.00 4.75
2825 4192 6.400091 CGCAAAGTTATGACGATATCTAAGGC 60.400 42.308 0.34 0.00 0.00 4.35
2826 4193 6.400091 GCGCAAAGTTATGACGATATCTAAGG 60.400 42.308 0.30 0.00 0.00 2.69
2827 4194 6.363626 AGCGCAAAGTTATGACGATATCTAAG 59.636 38.462 11.47 0.00 0.00 2.18
2828 4195 6.213677 AGCGCAAAGTTATGACGATATCTAA 58.786 36.000 11.47 0.00 0.00 2.10
2829 4196 5.769367 AGCGCAAAGTTATGACGATATCTA 58.231 37.500 11.47 0.00 0.00 1.98
2830 4197 4.621991 AGCGCAAAGTTATGACGATATCT 58.378 39.130 11.47 0.00 0.00 1.98
2831 4198 4.974103 AGCGCAAAGTTATGACGATATC 57.026 40.909 11.47 0.00 0.00 1.63
2832 4199 5.734855 AAAGCGCAAAGTTATGACGATAT 57.265 34.783 11.47 0.00 0.00 1.63
2833 4200 5.350365 AGAAAAGCGCAAAGTTATGACGATA 59.650 36.000 11.47 0.00 0.00 2.92
2834 4201 4.154195 AGAAAAGCGCAAAGTTATGACGAT 59.846 37.500 11.47 0.00 0.00 3.73
2835 4202 3.496884 AGAAAAGCGCAAAGTTATGACGA 59.503 39.130 11.47 0.00 0.00 4.20
2836 4203 3.810373 AGAAAAGCGCAAAGTTATGACG 58.190 40.909 11.47 0.00 0.00 4.35
2837 4204 6.542852 TGATAGAAAAGCGCAAAGTTATGAC 58.457 36.000 11.47 0.00 0.00 3.06
2838 4205 6.735678 TGATAGAAAAGCGCAAAGTTATGA 57.264 33.333 11.47 0.00 0.00 2.15
2839 4206 7.975866 ATTGATAGAAAAGCGCAAAGTTATG 57.024 32.000 11.47 0.00 0.00 1.90
2840 4207 7.009540 GCAATTGATAGAAAAGCGCAAAGTTAT 59.990 33.333 11.47 1.46 0.00 1.89
2841 4208 6.307800 GCAATTGATAGAAAAGCGCAAAGTTA 59.692 34.615 11.47 0.00 0.00 2.24
2842 4209 5.119125 GCAATTGATAGAAAAGCGCAAAGTT 59.881 36.000 11.47 0.00 0.00 2.66
2843 4210 4.622740 GCAATTGATAGAAAAGCGCAAAGT 59.377 37.500 11.47 0.00 0.00 2.66
2844 4211 4.860907 AGCAATTGATAGAAAAGCGCAAAG 59.139 37.500 11.47 0.00 0.00 2.77
2845 4212 4.808558 AGCAATTGATAGAAAAGCGCAAA 58.191 34.783 11.47 0.00 0.00 3.68
2846 4213 4.414852 GAGCAATTGATAGAAAAGCGCAA 58.585 39.130 11.47 0.00 0.00 4.85
2847 4214 3.485711 CGAGCAATTGATAGAAAAGCGCA 60.486 43.478 11.47 0.00 0.00 6.09
2848 4215 3.031812 CGAGCAATTGATAGAAAAGCGC 58.968 45.455 10.34 0.00 0.00 5.92
2849 4216 3.611517 CCGAGCAATTGATAGAAAAGCG 58.388 45.455 10.34 0.34 0.00 4.68
2850 4217 3.181497 TGCCGAGCAATTGATAGAAAAGC 60.181 43.478 10.34 2.80 34.76 3.51
2851 4218 4.095483 ACTGCCGAGCAATTGATAGAAAAG 59.905 41.667 10.34 4.47 38.41 2.27
2852 4219 4.009675 ACTGCCGAGCAATTGATAGAAAA 58.990 39.130 10.34 0.00 38.41 2.29
2853 4220 3.609853 ACTGCCGAGCAATTGATAGAAA 58.390 40.909 10.34 0.00 38.41 2.52
2854 4221 3.266510 ACTGCCGAGCAATTGATAGAA 57.733 42.857 10.34 0.00 38.41 2.10
2855 4222 2.988010 ACTGCCGAGCAATTGATAGA 57.012 45.000 10.34 0.00 38.41 1.98
2856 4223 5.679734 AATTACTGCCGAGCAATTGATAG 57.320 39.130 10.34 2.68 38.41 2.08
2857 4224 5.356751 ACAAATTACTGCCGAGCAATTGATA 59.643 36.000 10.34 0.00 38.41 2.15
2858 4225 4.158394 ACAAATTACTGCCGAGCAATTGAT 59.842 37.500 10.34 1.34 38.41 2.57
2859 4226 3.505680 ACAAATTACTGCCGAGCAATTGA 59.494 39.130 10.34 0.00 38.41 2.57
2860 4227 3.836949 ACAAATTACTGCCGAGCAATTG 58.163 40.909 0.00 0.00 38.41 2.32
2861 4228 4.022416 TGAACAAATTACTGCCGAGCAATT 60.022 37.500 0.35 0.00 38.41 2.32
2862 4229 3.505680 TGAACAAATTACTGCCGAGCAAT 59.494 39.130 0.35 0.00 38.41 3.56
2863 4230 2.881513 TGAACAAATTACTGCCGAGCAA 59.118 40.909 0.35 0.00 38.41 3.91
2864 4231 2.225491 GTGAACAAATTACTGCCGAGCA 59.775 45.455 0.00 0.00 36.92 4.26
2865 4232 2.414161 GGTGAACAAATTACTGCCGAGC 60.414 50.000 0.00 0.00 0.00 5.03
2866 4233 2.161609 GGGTGAACAAATTACTGCCGAG 59.838 50.000 0.00 0.00 0.00 4.63
2867 4234 2.156098 GGGTGAACAAATTACTGCCGA 58.844 47.619 0.00 0.00 0.00 5.54
2868 4235 1.883275 TGGGTGAACAAATTACTGCCG 59.117 47.619 0.00 0.00 0.00 5.69
2869 4236 2.029380 GGTGGGTGAACAAATTACTGCC 60.029 50.000 0.00 0.00 0.00 4.85
2870 4237 2.351350 CGGTGGGTGAACAAATTACTGC 60.351 50.000 0.00 0.00 0.00 4.40
2871 4238 2.882137 ACGGTGGGTGAACAAATTACTG 59.118 45.455 0.00 0.00 0.00 2.74
2872 4239 3.217681 ACGGTGGGTGAACAAATTACT 57.782 42.857 0.00 0.00 0.00 2.24
2884 4251 3.391296 AGATAGCAAATATCACGGTGGGT 59.609 43.478 8.50 0.30 42.51 4.51
2885 4252 4.008074 AGATAGCAAATATCACGGTGGG 57.992 45.455 8.50 0.00 42.51 4.61
2886 4253 5.056480 TCAAGATAGCAAATATCACGGTGG 58.944 41.667 8.50 0.00 42.51 4.61
2887 4254 5.985530 TCTCAAGATAGCAAATATCACGGTG 59.014 40.000 0.56 0.56 42.51 4.94
2888 4255 6.040955 TCTCTCAAGATAGCAAATATCACGGT 59.959 38.462 0.00 0.00 42.51 4.83
2889 4256 6.450545 TCTCTCAAGATAGCAAATATCACGG 58.549 40.000 0.00 0.00 42.51 4.94
2890 4257 7.936950 TTCTCTCAAGATAGCAAATATCACG 57.063 36.000 0.00 0.00 42.51 4.35
2891 4258 8.555361 GGTTTCTCTCAAGATAGCAAATATCAC 58.445 37.037 0.00 0.00 42.51 3.06
2892 4259 8.267183 TGGTTTCTCTCAAGATAGCAAATATCA 58.733 33.333 0.00 0.00 42.51 2.15
2893 4260 8.555361 GTGGTTTCTCTCAAGATAGCAAATATC 58.445 37.037 0.50 0.00 40.86 1.63
2894 4261 8.270744 AGTGGTTTCTCTCAAGATAGCAAATAT 58.729 33.333 0.50 0.00 40.86 1.28
2895 4262 7.624549 AGTGGTTTCTCTCAAGATAGCAAATA 58.375 34.615 0.50 0.00 40.86 1.40
2896 4263 6.479884 AGTGGTTTCTCTCAAGATAGCAAAT 58.520 36.000 0.50 0.00 40.86 2.32
2897 4264 5.869579 AGTGGTTTCTCTCAAGATAGCAAA 58.130 37.500 0.50 0.00 40.86 3.68
2898 4265 5.489792 AGTGGTTTCTCTCAAGATAGCAA 57.510 39.130 0.50 0.00 40.86 3.91
2899 4266 5.717178 ACTAGTGGTTTCTCTCAAGATAGCA 59.283 40.000 0.00 0.00 38.23 3.49
2900 4267 6.039616 CACTAGTGGTTTCTCTCAAGATAGC 58.960 44.000 15.49 0.00 33.26 2.97
2901 4268 7.397892 TCACTAGTGGTTTCTCTCAAGATAG 57.602 40.000 22.48 0.00 0.00 2.08
2902 4269 7.776618 TTCACTAGTGGTTTCTCTCAAGATA 57.223 36.000 22.48 0.00 0.00 1.98
2903 4270 6.672266 TTCACTAGTGGTTTCTCTCAAGAT 57.328 37.500 22.48 0.00 0.00 2.40
2904 4271 6.098409 AGTTTCACTAGTGGTTTCTCTCAAGA 59.902 38.462 22.48 0.00 0.00 3.02
2905 4272 6.284459 AGTTTCACTAGTGGTTTCTCTCAAG 58.716 40.000 22.48 0.00 0.00 3.02
2906 4273 6.235231 AGTTTCACTAGTGGTTTCTCTCAA 57.765 37.500 22.48 3.51 0.00 3.02
2907 4274 5.871396 AGTTTCACTAGTGGTTTCTCTCA 57.129 39.130 22.48 0.00 0.00 3.27
2908 4275 7.332182 CCATAAGTTTCACTAGTGGTTTCTCTC 59.668 40.741 22.48 5.56 31.83 3.20
2909 4276 7.162082 CCATAAGTTTCACTAGTGGTTTCTCT 58.838 38.462 22.48 9.79 31.83 3.10
2910 4277 6.128254 GCCATAAGTTTCACTAGTGGTTTCTC 60.128 42.308 22.48 7.88 36.09 2.87
2911 4278 5.705905 GCCATAAGTTTCACTAGTGGTTTCT 59.294 40.000 22.48 12.61 36.09 2.52
2912 4279 5.106277 GGCCATAAGTTTCACTAGTGGTTTC 60.106 44.000 22.48 10.73 36.09 2.78
2913 4280 4.765339 GGCCATAAGTTTCACTAGTGGTTT 59.235 41.667 22.48 13.36 36.09 3.27
2914 4281 4.332828 GGCCATAAGTTTCACTAGTGGTT 58.667 43.478 22.48 12.96 36.09 3.67
2915 4282 3.308188 GGGCCATAAGTTTCACTAGTGGT 60.308 47.826 22.48 6.17 36.09 4.16
2916 4283 3.279434 GGGCCATAAGTTTCACTAGTGG 58.721 50.000 22.48 4.49 36.51 4.00
2917 4284 3.054361 AGGGGCCATAAGTTTCACTAGTG 60.054 47.826 17.17 17.17 0.00 2.74
2918 4285 3.054361 CAGGGGCCATAAGTTTCACTAGT 60.054 47.826 4.39 0.00 0.00 2.57
2919 4286 3.545703 CAGGGGCCATAAGTTTCACTAG 58.454 50.000 4.39 0.00 0.00 2.57
2920 4287 2.241176 CCAGGGGCCATAAGTTTCACTA 59.759 50.000 4.39 0.00 0.00 2.74
2921 4288 1.005924 CCAGGGGCCATAAGTTTCACT 59.994 52.381 4.39 0.00 0.00 3.41
2922 4289 1.474330 CCAGGGGCCATAAGTTTCAC 58.526 55.000 4.39 0.00 0.00 3.18
2923 4290 0.334676 CCCAGGGGCCATAAGTTTCA 59.665 55.000 4.39 0.00 0.00 2.69
2924 4291 0.335019 ACCCAGGGGCCATAAGTTTC 59.665 55.000 11.37 0.00 39.32 2.78
2925 4292 0.335019 GACCCAGGGGCCATAAGTTT 59.665 55.000 11.37 0.00 39.32 2.66
2926 4293 0.552615 AGACCCAGGGGCCATAAGTT 60.553 55.000 8.20 0.00 39.32 2.66
2927 4294 0.988678 GAGACCCAGGGGCCATAAGT 60.989 60.000 8.20 0.00 39.32 2.24
2928 4295 0.695803 AGAGACCCAGGGGCCATAAG 60.696 60.000 8.20 0.00 39.32 1.73
2929 4296 0.253630 AAGAGACCCAGGGGCCATAA 60.254 55.000 8.20 0.00 39.32 1.90
2930 4297 0.253630 AAAGAGACCCAGGGGCCATA 60.254 55.000 8.20 0.00 39.32 2.74
2931 4298 1.149133 AAAAGAGACCCAGGGGCCAT 61.149 55.000 8.20 0.00 39.32 4.40
2932 4299 1.778383 AAAAGAGACCCAGGGGCCA 60.778 57.895 8.20 0.00 39.32 5.36
2933 4300 1.000771 GAAAAGAGACCCAGGGGCC 60.001 63.158 8.20 0.00 39.32 5.80
2934 4301 1.000771 GGAAAAGAGACCCAGGGGC 60.001 63.158 11.37 6.92 39.32 5.80
2935 4302 1.002857 ATGGAAAAGAGACCCAGGGG 58.997 55.000 11.37 6.87 42.03 4.79
2936 4303 2.907458 AATGGAAAAGAGACCCAGGG 57.093 50.000 2.85 2.85 32.90 4.45
2937 4304 6.437162 TCAATAAAATGGAAAAGAGACCCAGG 59.563 38.462 0.00 0.00 32.90 4.45
2938 4305 7.466746 TCAATAAAATGGAAAAGAGACCCAG 57.533 36.000 0.00 0.00 32.90 4.45
2939 4306 7.847711 TTCAATAAAATGGAAAAGAGACCCA 57.152 32.000 0.00 0.00 0.00 4.51
2940 4307 8.753133 AGATTCAATAAAATGGAAAAGAGACCC 58.247 33.333 0.00 0.00 0.00 4.46
2941 4308 9.794685 GAGATTCAATAAAATGGAAAAGAGACC 57.205 33.333 0.00 0.00 0.00 3.85
2979 4346 8.997621 TGCAAAATAGTAGATCGAAAACTAGT 57.002 30.769 9.74 0.00 0.00 2.57
2982 4349 8.784043 AGTTTGCAAAATAGTAGATCGAAAACT 58.216 29.630 14.67 0.00 0.00 2.66
2983 4350 8.950403 AGTTTGCAAAATAGTAGATCGAAAAC 57.050 30.769 14.67 0.00 0.00 2.43
2984 4351 9.959749 AAAGTTTGCAAAATAGTAGATCGAAAA 57.040 25.926 14.67 0.00 0.00 2.29
2985 4352 9.959749 AAAAGTTTGCAAAATAGTAGATCGAAA 57.040 25.926 14.67 0.00 0.00 3.46
2993 4360 9.959749 CAGGAAGTAAAAGTTTGCAAAATAGTA 57.040 29.630 14.67 5.80 0.00 1.82
2994 4361 8.691797 TCAGGAAGTAAAAGTTTGCAAAATAGT 58.308 29.630 14.67 6.82 0.00 2.12
2995 4362 9.696917 ATCAGGAAGTAAAAGTTTGCAAAATAG 57.303 29.630 14.67 0.00 0.00 1.73
2996 4363 9.691362 GATCAGGAAGTAAAAGTTTGCAAAATA 57.309 29.630 14.67 2.48 0.00 1.40
2997 4364 8.424133 AGATCAGGAAGTAAAAGTTTGCAAAAT 58.576 29.630 14.67 10.45 0.00 1.82
2998 4365 7.781056 AGATCAGGAAGTAAAAGTTTGCAAAA 58.219 30.769 14.67 0.00 0.00 2.44
2999 4366 7.346751 AGATCAGGAAGTAAAAGTTTGCAAA 57.653 32.000 8.05 8.05 0.00 3.68
3000 4367 6.959639 AGATCAGGAAGTAAAAGTTTGCAA 57.040 33.333 0.00 0.00 0.00 4.08
3001 4368 9.733556 TTATAGATCAGGAAGTAAAAGTTTGCA 57.266 29.630 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.