>input_sequence_62459
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-------------------------------------GAACCAACCAACAGGGCGACCAAGTTCAATTATCTCACCCAGC
CCGACTACTCAGCTACCGCCTCTCCAGTCTC-------CAGCTCCTT-CAACCTCC-CTCGATCCTCGAT----ACCTCT
ACATGGCGAGGGTTCACCCCAACATGGTGCCCGCCCCGGGCGCCGTCGGCGACGTGCCGTGCGCGCCGGCCAGCTCCGCG
GTGG---AGGGGCCGACGACGCTGACGGTGTGGCGCAAGTCGCTGCTATTCGACTGCAAGGGCTTCACGGTGTTCGACGC
CAAGGGCAACCTTGCCTACCGCGTCGACAGCTACGCCTCCGAGACCGGCGACGAAGTCGTCCTCATGGACGCGGCCGGCC
GCCCCTCCTTCACCGTCCGCCGTAAGCGGTTCAGCCTGCAGGGCGAGCAGTGGCTGGTGTTCGCCGGCGAGGAGACACGG
CGGCCCGTGTACGCCGTCAGGCGGAGCGGCCGCGGCAAGACGATGGCGCACGTCACGGCGTGCG------CCGGCGCCGG
GCCATCT------TACGAGGTGGAGGGGTCCTACGCACAACGTAGCTGCGTGGTGTACGACGGCCAGCGGCGCGCGGTGG
CGGAGATCAGGCCGAAGGAGGTGGTCGGGACTGATGTTTTCCGGATGGTGGTGCAGCCCGGCGTGGGCGTGTCGCTCGCC
ATGGCAGTGGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTCCTCAGGAGCTGGTCCACCATAGAT---TAGCT
AATTTAT---------TTGT--T-------ACATCTCGATTTAGTCAAGC---TAGT--CT-TTTTTTTACCCCTTGCAC
TAAGTTTGGGG--TTGGGTTGGAGGATGAATTGTGATAGCGAGAGTCGTTCGCTCGATGTGTGTGGGCATGAGAGCAAGT
CGATCTGTTCGATGATGCCCCCAAAA-TTATGAGCTTTTTCTTGGCCAATGAAAGCCTTGCCTCCTCCTACTGCCTTGCT
GTCGGTGTGTATATTCTTTGAATTCTTGAAGAAGGG-TGTAGATGTAAATAGTCAAAAAGAATATGAAAAATACTAATAA
ACAGTTCTTTTGCAT-----------------------------------------------------------------
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>chr3B_1_TraesCS3B01G372600
GCTAGCCATCAACCTCGTCGCGGTCGACCTGATCGTGACTAG------CTAAAGCTAAACTACTGATTAATTACTGCAAG
ATAACATCAGCAGCACGCGCGGGTGCTTCGTTAACCGCGTTCATTGGCTGCTCCCGTTGATTAACCGGGCGATCACCGTG
TCGTTAGCGCTTGCACTGATGGAATGTTATCGGCATGGAATTGATTTTCGCCGCCCGTCCACATGACCTCGAGCGATCGA
TCGCTGTCTGAGACGCACTAGGGTAGAGTACTAGCACACCCAAAGCCTGGCCTCCTGCCGCGTGTCGAGCCCGGGCCCTG
CGTTTCGTGGTGGTGTGCGTGGAGATATGCTCCGTTAGTGAACTCCGAATAGTTTTATGTCGACGGGTAGCGCGTCAACG
TATCGTGCGTAATCGCTTGCGGCCTAGATAACCTTGAAAAGCATACTGTTACTGTGATGGAGCAGCTTAATCTGCCGGAT
GCGGCA----------------------TGCGAGCTAAATCTGGCGTTGCTGATGGAAGAAAAGCATTG------CTCCA
CTTCTCCCACTCATGTCCAACTGAAAACTGCCACGCTAGATTGCAAAATTAATGGTTTCTGTAAAAAAAACGCCCCTAGT
TTCAAAGAAAAGAGCACTGGTTATTCACATTTAGTTTCATGGTTAGAGGCAAACTCACA---------------------
-------------------------------------------------------------------GAAATAGCATTGT
TGGTAGACATATCATCCTA----ATTTATCTATACATGCCAGCATTCTCTAGTTGTTGAGAGTAA--------ATTCAGT
CTTGCGTGCAGCCATTTGTTA---ATAGATTTTTATTCCAAGCAATCGATGATG---GATGATAAAAGAAACAAAAC---
AGTACT---TATTAATTAATGTCCGGAAGAGGTCGTTGAGCAGCAGCCCATGTCACCCCTGTCCCTACGCACGTCAGATC
AACATGCCTTTGCCTCTGCCTTTTCTGCGGGTTGCACAGTTTCTCC-----GGCCGGTCCACCATG----GAGCGAGACT
TGTATATAACAACAGCCTACCAGACTCCAT--TCTCAGAACCAACCAACAGGGCGACCAAGTTCAATTATCTCACCCAGC
CCGACTACTCAGCTACCGCCTCTCCAGTCTC-------CAGCTCCTT-CAACCTCC-CTCGATCCTCGAT----ACCTCT
ACATGGCGAGGGTTCACCCCAACATGGTGCCCGCCCCGGGCGCCGTCGGCGACGTGCCGTGCGCGCCGGCCAGCTCCGCG
GTGG---AGGGGCCGACGACGCTGACGGTGTGGCGCAAGTCGCTGCTATTCGACTGCAAGGGCTTCACGGTGTTCGACGC
CAAGGGCAACCTTGCCTACCGCGTCGACAGCTACGCCTCCGAGACCGGCGACGAAGTCGTCCTCATGGACGCGGCCGGCC
GCCCCTCCTTCACCGTCCGCCGTAAGCGGTTCAGCCTGCAGGGCGAGCAGTGGCTGGTGTTCGCCGGCGAGGAGACACGG
CGGCCCGTGTACGCCGTCAGGCGGAGCGGCCGCGGCAAGACGATGGCGCACGTCACGGCGTGCG------CCGGCGCCGG
GCCATCT------TACGAGGTGGAGGGGTCCTACGCACAACGTAGCTGCGTGGTGTACGACGGCCAGCGGCGCGCGGTGG
CGGAGATCAGGCCGAAGGAGGTGGTCGGGACTGATGTTTTCCGGATGGTGGTGCAGCCCGGCGTGGGCGTGTCGCTCGCC
ATGGCAGTGGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTCCTCAGGAGCTGGTCCACCATAGAT---TAGCT
AATTTAT---------TTGT--T-------ACATCTCGATTTAGTCAAGC---TAGT--CT-TTTTTTTACCCCTTGCAC
TAAGTTTGGGG--TTGGGTTGGAGGATGAATTGTGATAGCGAGAGTCGTTCGCTCGATGTGTGTGGGCATGAGAGCAAGT
CGATCTGTTCGATGATGCCCCCAAAA-TTATGAGCTTTTTCTTGGCCAATGAAAGCCTTGCCTCCTCCTACTGCCTTGCT
GTCGGTGTGTATATTCTTTGAATTCTTGAAGAAGGG-TGTAGATGTAAATAGTCAAAAAGAATATGAAAAATACTAATAA
ACAGTTCTTTTGCATATGGT--TCAGCTCGGCAGCCTCGATCGAGATAACA-----TTTTCTGTTATATAGTGTTTC--T
TGATCTTCTTTCAAACATACGTAC--------------------------------------------------------
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---------------------------------------------------------------------------AATTC
GTATTTCGTAGATCGCGAGTTTCTTGTATATTTGATTTTCGAGCAAAAGGATCGCCCATATCACG---------------
--------------------AGAGAGATCTACACCTGGGCACCCTTTTGTCTTTTTTTCTGCTTATCATCTAAGTGATAT
CTACTTGTCATAGTTTTCCGGACCGGTGATCATGGTAGTTAATGTTTTCATCGGTCGGACCACAGGT-----TCGTCTGG
TTTGATGCCGATTCGAGGTGCAATTCTGTTTTGCATAAAACATTACTCAGATAGAAATATTTGTTTAACAAGGAAAACAA
ACAAGATTAG---CTCAGTTGGCTATTGGGCCAGGTTTAAGCCCCTCGGCCTCTAACCCCTATGGCCTGGTTCCGATTCT
CTTGAGAAGCACATGGTTACAAAATTATAGCCTG-----AAAAGC-CATCGAGACAAGACCTCTTGGCCCAGCGAGACCC
CTATCGCATTATGTGGTGGCCTCTACCCTGGAACACCACTA-CCTCCCTTATAGCAACATGGCTGGAAGGAATAAACATG
GCCGTCTTTAGACTAGAAAGAACAACGACTCATTGAAGAAGGCCAACAGCCAATAGGTGATGCTTTATTCTTTATGAACT
TAATACTCTAGATGCATGCTGGATAGCGATCGATGTGTGGAGTAATAGTAGTAGATTCAGAATCGTTTCGGTCTACTTGA
CACGGACGTGGTGCCTATGTTCATGATCATTGCCTTAGATATCGTCATAACTTTGCGCTTTTCTATCAATTGCTCGGCAG
TAATTTGTTCACCCACCGTGATATTTGCTATCTTGAGAGAAACCACTAGTGAAACTTATGGCCCCTGGGTCTCTTTTCCA
TTTTATTGAATCTCTTTTACATTTTACTAGTTTTCGATCTACTATTTTGCAAACTTTTACTTCCTGATCTATAAACCAAA
AATAC
>chr3A_1
GCTAGCCATCAACCTCGTCGCGGTCGACCTGATCGTGACCAT------CTAAAGCTAAACCACTGATTAACTACTGCAAG
ATAACATCAGCAGCACGCGCGCATGCTTCGTTAAGCGCGTTCATTGGCTGCTCCCGTTGATTAACTGGGCGATCACCGTG
TCGTTAGCGCTTGCACCGATGGAATGTTATCGGTATGGAATTGATTTCTGCCGCCCGTCCACATGAACCCGAGCGATCGA
TCGCTGTCTGAGACGCACTAGGGTAGAGTGCTAGCACACCCAAGGCTTCGCCTCCTGCCGCGTGTCGAGCCCAGGCCCTG
AC-TTCGTGGTGGCGTGCGTGGAGATATGCTCCATTAGTGAACTGTGAATAGTTTTATGTCGACGGGTAGCGCGTCAACG
TTTCCTGCGTAATCGCTTGAGGGCTAGATAACCTTGAAAAGCATACTGTTACTGTGATGGAGC-----------------
-----A----------------------TGCGAGCTAAATCTGGCGTTATTGACGGAAGAAAATCATTACTCCTACTCCA
CTTCTCCCAG-----------TGAAAACTGCCACATTAGATTGCAAAGTCAATATAAAAATCAGGCTGTGTGTAAGTCGC
CTAAAAATTTATTTTGGGTAAGTTGATTTTTGGGCCATTGGATTAAAGATCCAACGGCCGTCCTTTCTTCTTCTTCCTTC
AGCCTTCTTCCTGTTTCAACCATTCCCCCTCTCACAAAATTGATTTATCTAAATGGTAAATTCAGTCGACATAGCATTAT
TGGTAGACAAATCCTCATACCATATTTATTTATTAGAGCCACCATTCTCACGCTGTTGAGACTTGAGAGTAACATCG-GT
CTTGCGTGCAGGCATTTGTTA---ATATATTTTTGTTCCAAGCAATCGATGAGCAGCGATGACAAAAGAAACAAAATAGT
AGTACT---TATTAATTAATG-CCGGAAGAGGTCGTTAAGCAGCAGCCCATGTCACCCCTGTCCCTACGCACGTCAGATC
AACATGGCTTTGCCT------TTTCTGCGAGGTGCACAGTTTCTCC-----GGCCGGTCCACCATG----GAGCGCGACC
TGTATATAAGTACGGCCTACCAGACTCCAT--TCTCAGAACCAACCAACAGGGCGACCCAGCTCAATTATCTCATCCAGC
CCGACTACTCAGCTACCGCCTCCCCAGTCTC-------CAGCTCCTC-CAACCTTG-CTCGATCCTTGATCGATACCTCT
ACATGGCGAAGGTTCACCCTAACATGGTGCCCGCGCCGGGCGCCGTCGACCAGGCGCCGTGCGCGCCGGCCAGCTCCAC-
--TG---AGGAGCCGACGACGCTGACGGTGTGGCGCAAGTCGCTGCTGTTCGACTGCAAGGGGTTCACGGTGTTCGACGC
CAAGGGCAACCTGGCCTACCGCGTCGACAGCTACGCCTCCGAGAGCGGTGACGAGGTCGTCCTCATGGACGCCGCCGGCC
GCCCCGCCTTCACCGTCCGCCGCAAGCGGTTCACCCTGCAGGGCGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCGG
AAGCCCGTGTACACAGTCAGGCGCAGCGGCCGCGGCAAGACGTCGGCCCACGTGACGGCGTGCGCGGGCGCCGGAGCCGG
GCCGTCG------TACGAGGTAGAAGGGTCGTACGCGCGGCGGAGCTGCGTGGTGTACGACGGCGAGCGGCGCGCGGTGG
CGGAGATCAGGCCCAAGGAGGTGGTCGGCACAGACGTTTTCCGGCTGGTCGTGCAGCCCGGAGTCGGCGTGTCGCTGGCC
ATGGCCGTGGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTGCTCAGGAGCTGGTCCACCATAGAT---TAGTG
AATTTAT---------TTGT--T-------ACATCTCGATTTAGTCAAGC---TAGT--CT-TT-TTTTACCCCTTGCAC
TACGTTTGGGG--TTGGGTTGGAGGATGAATTGTGATAGCGAGAGTCATTCGCTCGATGTGTGCGGGCATGAGAGCAAGT
CGATCTGTTCGATGATGCCCCCCAAA-TTATGAGGTTTTTCTTGGCCCATGGAAGCCTTGCCTCCTCCTACTGCGTTTCT
GTCGGTGTGTATATTCTTTGAATTCTTGAAGAAGGG-TGTAGATGTAGATAGTCAACAAGAATATGAATAATAATAA---
ACAGTTCTTTTGTATACGGTTGTCAACTCGCCAGCCTCGATCGAGACAACA-----TTTTCTTGTATATAGTGTTTC--T
TGATCTTCTTTCAAACGTACGTAC--------------------------------------------------------
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---------------------------------------------------------------------------AATTC
GTATTTCGTGGATGCCGAGTTTCTTGTATATTTTCAAATGTAC-------------------------------------
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-----------------------------------------------------------------GT-----TCGTCTGG
TTTGATTCCGATTCAAGGTGCAATTTTCTTTTGCAGAAAACATCACTCAGATAGAAATATTTGTTTAACAAGGACATCAA
ACAAGATTAG---CTCAGTTGGCTATTGGG-----------------------------------------TTCAATTCT
CTTGAAAAGCACAT-------------------------------------------GACCTCTTGGTCCGGCGAGACCT
CCATCACATTATGTGGTGGACTCTACCCTGGAACACCACTA-CCTCCCTTGTAGCAACATGGCTGGAAGGAATAAACATG
GCCACCTTTACACCAGAAAGAGCTATGACTC-------------------------------------------------
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>chr3D_8
-------ATCAACCTCGTCGCGGTCGACCTGATCGTGACTAGCTAAAGCTAAAGCTAAACTACTGATTAATTACTGCAAG
ATAACATCAGCAGCACGCGCGGATGCTTCGTTAACCGCGTTCATTGGCCGCTCCCGTTGATTAACCGGGCCATCACCGTG
TCGTTAGCGCTTGCACCGATGGAATGTTATCGGCATGGAATTGATTTCTGCCGCCCGTCCGGATGAACTCGAGCGATCGA
TCGCTGTCTGAGACGCACTAGGGTAGAGTGCTAGCACACCCAAGGCTTGGCCTCCTGCCGCGTGTCGAGTCCGGGCCCTG
CG-TTCGTAGTGGTGTGCGTGGAGATATGCTCCATTAGTGAACTCTGAATAGTTTTATGTCGACGGGTAGCGCGTCAACG
TATCGTGCGTAATCGCTTGGAGGCTAGATAACCTTGAAAAGCATACTGTTACTGTGATGGAGC-----------------
-----AGTTTAGTCTGCCGGATGCGGCGTGCGAGCTAAATCTGGCGTTGCTGATTGAAGAAAAGCATTG------CTCCA
CTTCTCCCACTCATGTCCAACTGAAAACTGCCACGTTAGATTGCAAAATTAATGGTTTCTGTAAATTACATGCCCCTAAT
TTCAAAGAAAAGAGCACTGGTTATTCACATTTAGTTTCATGGT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------TACATACCAGCATTCTCTAGTTGTTGAGAGTAA--------ATCG-GT
CTTGCGTGCAGCCATTTGTTACTAATAGATTTTTGTTCCAAGCAATCGATGAGCAGCGATGACAAAAGAAACAAAAC---
AGTACTACTTATTAATTAATGCCCGGAACAGGTCGTTGAGCAGCAGCCCATGTCACCCCTGTCCCTACGCACGTCAGATC
AACATGCCTTTGCCA------TTTCTGCGA-GCGCACAGTTTCTCC-----GGCCGGTCCACCATG----GAGCGAGACC
TGTATATAACCAC-GCCTACCAGACTCCAT--TCTCAGAACCAACCAACAGGGCGACCAAGCTCAATTATCTCATCCAGC
CCGACTACTCAGCTACCGCCTCCCCAGTCTC-------CAGCTCCTT-CAACCTTG-CTCCATCCTTGATCGATACCTCT
ACATGGCGAAGGTTCACCCCAACATGGTGCCCGCGCCGGGAGCCGTCGACGAGGCGCCGTGCGCGCCGTCCAGCTCCAC-
--GG---AGGAGCCGACGACGCTGACGGTGTGGCGCAAGTCGCTGCTGTTCGACTGCAAGGGGTTCACGGTGTTCGACGC
CAAGGGCAACCTGGCCTACCGCGTCGACAGCTACGCCTCCGAGAGCGGCGACGAGGTCGTCCTCATGGACGCGGCCGGCC
GCCCCGCCTTCACCGTCCGCCGGAAGCGGTTCAGCCTGCAGGGCGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCGG
CGGCCCGTGTACACCGTCAGGCGCAGCGGCCGCGGCAAGACGTTGGCGCACGTGGCTGCGTGCGGGGGCGCCGGAGCCGG
GCCGTCG------TACGAGGTGGAGGGGTCCTACGCGCGGCGGAGCTGCGTGGTGTACGACGGCGAGCGGCGCGCGGTGG
CGGAGATCAGGCCGAAGGAGGTGGTCGGGACTGACGTTTTCCGCCTGGTGGTGCAGCCCGGCGTTGGCGTGTCGCTCGCC
ATGGCCGTGGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTCCTCAGGAGCTGGTCCACCATAGAT---TAGTG
AATTTAT---------TTGTTAT-------ACATCTCGATTTAGTCAAGC---TAGT--CTCTTTTTTTACCCCTTGCAC
TAAGTTTGGGGGGTTGGGTTGGAGTGTCAATTGTGATAGCGAGAGTCATTCGCTCGATGTGTGTGGGCATCAAAGCAAGT
CGATCTGTTCGAGGATGCCCCCCAAAATTATGAGGTTTTTCTTGGCCCATGGAAGCCTTGCCTCCTCCTACTGTGTTTTT
GTCGGTGTGTATATTCTTTGAATTCTTGAAGAAGGG-TGTAGATGTAAATAGTCAAAAAGAATATGAAAAATAATAA---
ACAGTTCTTTTGTATACGGTTCTCAGCTTGCCAACCTCGAGATA-------ACATCTTGTCTTC--TACAGTGTTGTCTT
G-----------------ATCTTC--------------------------------------------------------
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---------------------------------------------------------------------------AATGC
GTATTTGGTGGCTTGCAAATTTCTGGTATATTTGATTCTCGAGCAAAAGGATCGCCCAGATCACCAGAGAC---------
--------------------AGAGAGATCTAGACATGGACACCCTCTCGTCTTTTTTCC-GCTTACCATCGAGCAGATAA
CTACTCATTATAGTTTTTCGGACCAACGAGCTTGGCGGTTCAGGTTTTCATCAGTCGGACCGTTAGTTCATCACGTTT--
---------GATTCAAGGTACAATTTTCTTTTGCATAAAATATAGCTCGGATAGAAATATTTGTTTAATAAAGACAACAA
ACAAGCTTAG---CTCAGTTGGCTATTGGGCCGGGTTTAAGCCCCTTGACCTCTAACCCGTATGACCTGGGTTCGATTCT
CTTGAGAAGCACGTGATTACAAAATGGTCCAATTAGCTTGAAAAATCATCGAGA------------------CAAGACCT
CCATCGCATTATGTCGTGGACTTTACCCTGGGACACCACTA-CCTCCCCTATAGCAACATGGCTGGAAGGAATAAACATG
GTCGCCTTTAGACCAGAAAGAACAATGACTCGTGGAAGAAGGCCAACAACCGATAAGTGATG------------------
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>chr3A_823
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-----T---TATTAATTAACTGA-GGAAGAGGTCGTTAAGCAGCAGCCCATGTCACTTGCGTCCCTACGCACGTCAGAGC
AACATGCCTTTGCCT------TCTTTGCCG-GTGGACAGTTTCTCCCGCCCGGCCGGACCATCATGGAGCGAGCTGGACT
TGTATATAACTACAGCCTACCACAGACTCCTCTCTCAGAACCAACCAACAGGCCGACCAAGCTCAATTAGCTCA------
--GACTACCCAGCTACCGCCTGTCCGCTCTC--------AGCTCCTTCGACCCTGATATCGATA------------CTAC
ACATGGCGAAGGTTCACCCCAACATGGCGCCCGCGCCGGGCGCCGTCGACGAGGCGCCGTGCGCGCCGGCCAGCTCCGC-
--GG---AGGGGCCCACGACGCTGACGGTGTGGCGCAAGTCGCTGCTATTCGACTGCAAGGGGTTCACGGTGTTCGACGC
CAAGGGCAACCTGGCCTACCGCGTCGACAGCTACGCCTCCGAGAGCGGCGACGAGGTCGTCCTCATGGACGCGGCCGGCC
GCCCCAACTTCACCGTCCGCCGTAAGCGGTTCAGCCTGCAGGGCGAGCAGTGGTTGGTGTTCGCCGGCGAGGAGACGCGG
CGGCCCGTGTACACAGTCAGGCGCAGCGGCCGCGGCAAGACGTTGGCGCACGTGACGGCGTGCGCGGGCGCCGGAGCCGG
GCCGTCG------TACGAGGTGGAGGGGTCCTACGCGCGGCGGAGCTGCGTGGTGTACGACGGAGAGCGGCGCGCGGTGG
CGGAGATCAGGCCGAAGGAGGTTGTCGGGACTGATGTTTTCCGGCTAGTGGTGCAGCCCGGAGTCGGCGTGTCGCTCGCC
ATGGCCGTGGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTGCTCAGGAGCTGGTCCACCGTAGAT---TAGAT
AATTATAATTCGTTTGTTAT--T-------ACGTCTCGATTTAGTCAAGC---TAGC--CT-TT-TTTTGCCCCTTGCGC
TTAGTTTGGGG--TTAGGTTGGAGTACAAATTGTGATGGCGAGAGTCGATCGCTCGATGTGTGTGGGCATGAGAGCAAGC
CGATCTGTTCGATGATGCTCCCCAAAATTATGAGGTTTTTCTTGGCCAATGGAGGCCTTGTCTCCCCCTACTGCGTTTCT
CTCGATGTGTATATTCTTTGAATTCTTTAAGAAGGA-TGTAGATGTAAATAGTCAAAAATAATATGAAAA-TAATAA---
ACAGTTCTTTTGTATACGGTTCTCCGCTTGCCAACCTCGAGATAACTCATAACATCTTGTCTTCTTCATAGGTTGTC--T
TGATCTTCTTTGAAAAAACTAACGCCCACACGTGTGACATCTTACACATCGCCCACACACCTTCATATCCACTCATTTTG
TCACATCAAAACAGATGACATCAAAATGAATCTTTTTAGTTTTTGGTTTAAAATTATTTTATCTCCTAATTATAAAATCC
AATTAAAAATTCATTTTCACCATTAAATCGTCTCGACGAGATCTTCAAAACTAGACCCCATGTTGATATGTTTCGATTAC
GTTTTTTTTTACCTAAAAGTTGCCATGATGTTTACATTATAGTTGTCATAGTGCTTAAACTAAAGTTGCCACGTGGCAAT
TTTAGTTTGTAGAGCATGGCAATTTTAGTATTTTGATGATGACAATTCCAGTAGTTTGCCCATGAAAATTATTTTTTGTA
TGAACCATGGCGATTTTAAGTGCATGTGTCATGGTAATTTTAGTTTATGGTTCATGGCAAGTCTAGTTTCCCAATTTCCT
GTTTTATAATATGTCAAAATTATAATATGGCAATTTTATATGCCATGATGTTTACACTGTAGTTGTCATAGTGCTTCAAC
TAAAGTTGCCACGTGGCAATTTTAGTTTGTAGAGCATGGCAATTTTAGTATTTTGATGATGGCAATTCCAGTAGTTTGCC
CATGAAAATTATAACCATGGCAATTTTAAGTGCATGTATTATGGCAATTTTAGTTTATGGTTCATGGCAAGTCTAGTTTC
TTAATTTCCTGTTTTATAATATGTCAAAATTTACTTTTAAATGTAGAAGAAAATAGCTGAAATATATCATGATAACTTCA
ATGTAAACACCATGACAATTCATATGCAATAGACATGGCAGCTTTTAACCTTCAAAAAAAAATTCATCAAAATATATTGT
ATGAGATCTAGTTTCGAAGATCCAGTCGCGAGGAATTTAATGGTGGAAACGGATTTTCAATCGAATTTTTCATTTAAGAG
ATAAAACATCTTAAAAACTGAAAATTCAAAAAGATTCCCACATGCATGCATGCGGTGACGTGGTAGTCTGTGTGTTATAG
AACGTGTATGCGAATTTCGCTTTCACCACACGTGTGGGCGTTAGCATTGTCCATCTTCTTTCATACATACGTACAAATTC
ATATTCCATGGCTTGTGAATTTCTGGTATATTTAATTCCCGAGCAAAAGGGTCGCCTAG-----------C---------
--------------------AGAGAGATCAAGACGTTGACATCCTCTCGTCTTTTTTTG-GCTTACCTTTGAACATATAA
CTACTAGTCATAGTTTTTCGGACCAGCGAGGCTCACAGTTCACGTTTTCACCGGTAGGACCGTAGGCTCATCTCGTCTGG
TTCGGTGCCGATTCAAGGTACAATTTTGTTTTGTATATAATATAGCTAAGATGTAAATATTTGTTTAATAAAGACAACAA
ACAAGTCTAG---CTCAGTTTGCTCTTGGGCTAGGTTTAAGCCCCTCGGCCTCTAACCCCTATGACCTGGGTTCAATTCT
CTTTTGAAGCACGTGATTAGAAAGCGGTCTGATTTGCTTAAAAAC-CATCAAGACAAAACAACTTGGTTCGGCAAGACCT
CCATCACATTATGTCATGGGCTCTACCCTAGAATGCCACTAT------TTATAGCAACATGGCTG---------------
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>chr3D_826
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-----------TTAATTAATTGA-GGAAGAGGTCGTTAAGCAGCAGCCCATGTCACTTGTGTCCCCACGCACGTCAGAGC
AACATGCCTTTGCTT------TTTCTGCCG-GTGGACAGTTTCTCC-----GGCCGGTCCATCATAGAGCGAGCGAGACC
TGTATATAACCACCGC---CCACGGACCCGACCCTCAGAGCCAACCAACAGGGCGACCAAGCTCAATTATCTCA------
--GACTACTCAGCTACCGCCTGTCCGCTCTC--------AGCTCCTTTGAGCCCTC-ATCGATA------------CTCT
TCATGGCGAGGGTTCACCCCAACATGGTGCCCGCCCCGGGCGCCGTCGGCGAGGCGCCGTGCGCGCCGGCCAGCTCCGC-
--GGTGGAGGAGCCGACGACGCTGACGGTGTGGCGCAAGTCCCTCCTGTTCGACTGCAAGGGGTTCACGGTGTTCGACGC
CAAGGGCAACCTGGCCTACCGCGTCGACAGCTACGCCTCGGAGACCGGCGACGAGGTCGTCCTCATGGACGCGGCTGGCC
GCCCCGCCTTCACCGTTCGCCGAAAGCGGTTCAGCTTCCAAGGCGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCGG
CGGCCCGTGTACGCCGTCAGGCGCAGCGGCCGCGGCAAGACGATGGCGCACGTGACGGCGTGCG------CCGGCGCCGG
GCCGTCT------TACGAGGTGGAGGGGTCGTACGCGCGGCGGAGCTGCGTGGTGTACGACGGCGAGCGGCGCGCGGTGG
CGGAGATCAGGCCGAAGGAGGTGGTCGGCACGGACGTGTTCCGGCTGGCGGTGCAGCCTGGAGTCGACGTGTCGCTGGCC
ATGGCCGTGGTGGTGGCGCTCGAGCAGATGTTCTCCAGACCGTCGCTCCTCAGGAGCTGGTCCACATAGATTATATAGTT
AATTATAATTTGTTTGTTC---ATCGGAGCACGTCTCAGTTTAGTCAAGC---TTATAGCT-TT-TTTTGCCCCATGCAC
TCAGTTTGGGG--TTGGAATTGAGACCGTGAGAGTC------GA-TCGATGGATCTTTGTGTGTGGGCATGAGAGCAAGC
CGATCTGTTCGATGATGCCCTCCAAA------------------------------------------------------
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>chr3B_829
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--------------ATTAATTGA-GGAAGAGGTCGTTAAGCAGCAGCCCATGTCACTTGCGTCCCCACGCACGTCAGAGC
AACATGCCTTTGCCT------TTTCCGCGG-GTGGACAGTTTCTCC-----GGCCGGTCCATCATAGAGCGAGCGAGACC
TGTATATAACTACCGCCTACCACGGACTCGACCCTCAGTGCCAACCAACAGGGCGACCAAGCTCAATTATCTCA------
--GACTACTCAGCTACCGCCTGCCCGCTCTGGCGCTCTCAGCTCCTT-GAGCCCTA-ATCGATA------------CTCT
ACATGGCGAGGGTTCACCCCAACATGGTGCCCGCCCCGGGCGCCGTCGGCGACGTGCCGTGCGCGCCGGCCAGCTCCGCG
GTGG---AGGGGCCGACGACGCTGACGGTGTGGCGCAAGTCGCTGCTATTCGACTGCAAGGGCTTCACGGTGTTCGACGC
CAAGGGCAACCTTGCCTACCGCGTCGACAGCTACGCCTCCGAGACCGGCGACGAAGTCGTCCTCATGGACGCGGCCGGCC
GCCCCTCCTTCACCGTCCGCCGTAAGCGGTTCAGCCTGCAGGGCGAGCAGTGGCTGGTGTTCGCCGGCGAGGAGACACGG
CGGCCCGTGTACGCCGTCAGGCGGAGCGGCCGCGGCAAGACGATGGCGCACGTCACGGCGTGCG------CCGGCGCCGG
GCCATCT------TACGAGGTGGAGGGGTCGTACGCGCGTCGGAGCTGCGTAGTGTACGACGGCGAGAGGCGCGCGGTGG
TGGAGATCAGGCCCAAGGAGGTGGTCGGCACGGACGTTTTCCGCCTGGCGGTGCAGCCTGGAGTCGACGTGTCGCTGGCC
ATGGCCGTTGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTCCTCAGGAGCTGGTCCACATAGATTATATAGTT
AATTATAATTTGTTTGTTCATCATCGGAGCACGTCTCAGTTTAGTCAAGC---TTATAGCT-TT-TTTTGCCCCATGCAC
TCAGTTTGGGG--TTGGAATTGAGACCGTTAGAGTC------GA-TGGATCGATCTGTGTGTGTGGGCATGAGAGCAAGC
CGATCTGTTCGATGATGCCCTCCAAA------------------------------------------------------
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>chr3A_829
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--------------ATTAATTGA-GGAAGAGGTCGTTAAGCAGCAGCCCATGTCACTTGTGTCCCCACGCACGTCAGAGC
AACATGCCTTTGCTT------TTTCTGCCG-GTGGACAGTTTCTCC-----GGCCGGTCCATCATAGAGCCAGCGAGACT
TGTATATAACCACCGCCTACCACGGACCCGA-CCTCAGAGCCAACCAACAGGGCGACCAAGCTCAATTAGCTCA------
--GACTACTCAGCTACCGCCTGTCCGCTCTC--------AA------------TTG-CTCCATA------------CCCT
ACATGGCGAGGGTTCACCCCAACATGGTGGCCGCGCCGGGCGCCATCGACGAG---------GCGCCGGCCAGCTCCGCG
GTGG---ACGGGCCGACGACGCTGACGGTGTGGCGCAAGTCCCTGCTGTTCGACTGCAAGGGGTTCACGGTGTTCGACGC
CGAGGGCAACCTTGCCTACCGCGTCGACAGCTACGCCTCCGAGAGCGGCGACGAGGTCGTCCTCATGGACGCGGCCGGCC
GCCCCGCCTTCACCGTCCGCCGCAAGCGGTTGACCCTGCAGGGCGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCGG
AGGCCCGTGTACACCGTCAGGCGGAGCGGCCGCGGCAAGACGTTGGCGCACGTGACGGCGTGCGCGGGCACCGGCGCTGG
GCCGTCT------TACGAGGTGGAGGGGTCGTACGCGCGGCGGAGCTGCGTGGTGTACGACGGCGAGCGGCGCGCGGTGG
CGGAGATCAGGCCCAAGGAGGTGGTCGGCACGGACGTGTTCCGCCTGGCGGTGCAGCCCGGCGTGGGCGTGCCGCTCGCC
ATGGCAGTGGTGGTGGCGCTGGAGCAGATGTTCGCGAGGCCGTCGCTCCTCAGGAGCTGGTCCACATAGATTATATAGTT
AATTATAATTTGTTTGTTCAT---CGGAGTACGTCTCAGTATAGCCAAGCTTATAGC--TT-TT-TTTTGCCCCTTGCGC
TCAGTTTGGGG--TTGGAATTGAGACCGTGTCGATCGATG--GA-TCGATCGATCTGTGGGTGTGGGCATGAGAGCAAGC
CGATCTGTTCGATGATGCCCTCCAAA------------------------------------------------------
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>chr3D_956
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----------------------------------------------------------------------GAGCGGGACT
TGTATATAACTACTGCCTACCACAGACTCCTCTCTCAGAACCAACCAACAGGGCGACCAAGCTCAATTAGCTCG------
--GACTACTCAGCTACCGCCTGTACGCTCTC--------AGCTCCTTCGACCCTGATATCGATA------------CTAT
ACATGGCGAAGGTTCACCCCAACATGGCGCCCGCGCCGGGCGCCGTCGGCGAGGCGCCGTGCGCGCCGGCCAGCTCCGC-
-----GGAGGGGCCGACGACGCTGACGGTGTGGCGCAAGTCGCTGCTGTTCGACTGCAAGGGGTTCACGGTGTTCGACGC
CACGGGCAACCTGGCCTACCGCGTCGACAGCTACGCGTCCGAGAGCGGTGACGAGGTCGTCCTCATGGACGCCGCCGGCC
GCCCCGCCTTCACCGTCCGCCGCAAGCGGTTCAGCCTCCAGGGTGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCGG
CGACCCGTGTACACCGTCAGGCGTAGCGGGCGCGGCAAGACGTTGGCGCACGTGACGGCGTGCGCGGGCGCCGGCGCCGG
GCCGTCGTACGACTACGAGGTGGAGGGCTCGTACGCGCGGCGGAGCTGCGTGGTTTACGACGGCGAGAGGCGCGCGGTGG
CGGAGATCAGGCCCAAGGAGGTGGTCGGGACCGACGTTTTCCGGCTGGTGGTGCAGCCCGGCGTGGGCGTGTCGCTCGCC
ATGGCCGTGGTGGTGGCGCTCGAGCAGATGTTCGCCAGGCCGTCGCTGCTCAGGAGCTGGTCCACCGTAGAT---TAGTC
AATTTGT---------TTGT--TTGTA---ACGTCTCGATTTAGTCAAGC---TAGC--CT-TT-TTTTGCACCTTGCGC
TTAGTTTGGGG--TTGGGTTGGAGTACAAATTGTGATGGCGAGA-TCGATCGCTCGATGTGTGTGGGCATGAGAACAAGC
CGATCTGTTAGATGATGCCCCCCAAAATTATGAGGTTTTTCTTGGCCAATGGAAGCCTTGCCTCCCCCTACTGCGTTTCT
GTCGGTGTGTATATTCTTTGAATTCTTGAAGAAGGACCG-AGATGTAAATAGTCAAAAAGAATATGAAAAATACTAATAA
ACAATTCGTTTGTATACGGTTCTCAGCTTGCCAACCTCGAGATA-------ACATCTTGTCTTTTATATAGTGTTGTCTT
TGATCTTGTTTCAAACGTTCATAC--------------------------------------------------------
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---------------------------------------------------------------------------AATTC
ATATTTCGTGGCTTGCGAGTTTTTGGAATATTTGATTTTCGAGCAAAAGAACCACCCATAT-------------------
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>chr3B_1034
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----------------------------------------------------------------------CTCATCCAGC
CCGACCAATCAGCTACAGCATCTCCG-TCTC-------CAGCTCCTT-CAACCTTG-ATCGATA------------CTCC
GCATGGCGAAGGTTCACCCCAACATGGTGCCCGCGCCGGGCGCCGTCGACCGGACGCCATGCGCGCCGGCCAGCTCCAC-
-----GGAGGGGCCAACGACGCTCACGGTGTGGCGCAAGTCGCTGCTGTTCGACTGCAAGGGGTTCACGGTGTTCAATAC
CAAGGGCAACCTGGCCTACCGCGTCGACAGCTACGCCTCCGAGAGCGGCGACGAGGTCGTCCTCATGGACGCCGCCGGCC
GCCCCGCCTTCACCGTCCGCCGCAAGCGGTTCAGCCTCCAGGGCGAGCAGTGGCTCGTCTTCTCCGGCGAGGAGACGCGG
CGTCCCGTGTACACAGTCAAGCGCAGCGGCTGCGGCAAGACGTTGGCCCACGTGACGGCGTGCGCGGGCGCGGTTGCCGG
GCCGTCG------TACGATGTGGAGGGGTCCTACGCGCGGCGGAGCTGCGTGGTGTACGACGGCGAGCGGCGCGCGGTGG
CGGAGATCACGCCGAAGGAGGTGGTCGGGACGGACGTGTTCCGCCTGGTGGTGCAGCCCGGAGTCGGCGTGTCGCTGGCC
ATGGCCGTGGTGGTGGCGCTCGAGCAGATCTTCGCCAGGCCGTCGCTGCTCAGGAGCTGGTCCACCGTAGAT---TAGTC
AATTTGT---------TTGT--TTGT---TACGTCTCGACTTAGTCAAGC---TAGC--CT-TT-TTTTGCCCCTTGCAC
TTGGTTTGGGG--TTGGGTTGGAGGATGAATTGTGATGGCGAGAGTCGGTCGATCCGTGTGTGTGGGCGTGAGAGCAAGC
CGATCTGTTCGATGATGCCCCCAAAA-TTACGAGTTTTTTCTTGGCCCATGGAAGCCTTGCCTCCTCCTACTGCGTTTCT
GTCGGTCTGTATATTCTTTGAATTCTTGAAGAAGGGATGTACATGTACATATTCAAAAAGAAAATGAAAAATAATGA---
ACAGTTCTTTTGTATACGGTTCTCAGCTTGCCAACCTCGAGATA-------ACATCTTGTCTTTTATATAGTGTTGTCTT
TGATCTTCTTTCAAACTTTCGTAT--------------------------------------------------------
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---------------------------------------------------------------------------AATTC
ATATTTCGTGGCTTGCGAGTTTTCGATATATTTGATTTTTGGGCAAAAGAATCGCTCATATTTTTTAATATTTTTTTGTG
AGGGAATCGCCCATGTGACTAGAGAGATCTAGACATGGACACCCTCTCGTCTTTTTTTG-GCTTACCATCGAATGTATAA
CTACTCGTCATAGTTTT-CGGACCAGCGAGCTTGGCAGTTCAGGTTTTCACTAGTCGGACAGTAGGTTCATT-----TGG
TTCAATGCGGATTCAACATACAATTTTGTTTTGCATATAATGTAGCCCAGATAGAAATTTTTGTTTAATACGGAAAACAA
AACAAGCCTAGCTCTCAGTTGACTATTGGGCCAAGTTTAAGCCCCTCGGCCTCTAACCACAATTACCTGGGTTCGATTCC
CTTGAGAAGCACGTGATTATGAAACTGTCTGATTAGCTTAAAAACCCATCAAGACAAGACCACTTGGTCCGGGGAGACCT
CCATCGCATTATGTCGTGGACTCTAGCCTGGAACACCACTACCCCCCCTTATAGCAACATGGCTGGAAGGAATAAACATG
GCCACCTTTAGAGCAGAAAGAACAACGACTTATTGGAGAAGGCCAACAGCCGATAGGTGATG------------------
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>SNPs
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
----------------S------------------------------SS-----------------S-------------
-----------------------------S-------------S--S---------------------------------
--S------------------------------S-----------S----------------------------------
-------------------S--S----------------------------------------SSSSSSSSSSSSSSSSS
SSSSS---------------------------------------------------------------------------
-----------------------------------S-----------------------------SS-S-S---------
---------------------------------------------S--SSSS-SSSS-S---------------------
---------------------------------------------------------------------S--------S-
---------S---S--S------------S---------------------------------------------SSS--
----------------------------------S-----------------SS--------S-----------------
---------------------S----------------------------------------------------------
---------------SSSSSS----------S------------------------------------------------
----------S--------------------------------------------------S------------S-----
------------------------------------------------------S-----------S-------------
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------------------------------------S-SS--S---------------------S---------------
--------------------------------------------S-----------------------------------
------------------------------------------------------------------------------S-
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----------------------------------S----------------S----------------------S--S--
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------------S---S-------------S-------------------------------S-----------------
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---------S---S--------------------------------------------------S---------------
-------------------------------S--S---S------S-S-----------S-----S----S--SS----S
-----S-----------S------S-S--S-S---S----S-S------------------SS-----------------
--------------S----------S-----------------S------------------------------------
----------------------------------------------------------------S-----S-S-------
---------------S----------S-SSSS-S---------S-----------------------S--S--------S
-S-----------------S------------------------------------------------------------
----S--------S-------------------------------------S----------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_1059
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-------------------------------------------------------------------------------C
AACATGCCTTTGCCTCTGC-------------------------------------------------------------
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>reverse_4154
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-------------------------------------------------------------------------TACTTGA
CACGGACGTGGTG-------------------------------------------------------------------
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