Multiple sequence alignment - TraesCS3B01G368000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G368000 chr3B 100.000 3065 0 0 1 3065 580204750 580207814 0.000000e+00 5661.0
1 TraesCS3B01G368000 chr3B 94.521 365 19 1 832 1196 828460327 828460690 2.060000e-156 562.0
2 TraesCS3B01G368000 chr3B 97.546 163 0 1 2907 3065 51042781 51042619 3.010000e-70 276.0
3 TraesCS3B01G368000 chr3B 97.531 162 0 1 2908 3065 765936115 765935954 1.080000e-69 274.0
4 TraesCS3B01G368000 chr3D 95.330 1242 50 4 964 2197 442754712 442755953 0.000000e+00 1965.0
5 TraesCS3B01G368000 chr3D 83.353 835 55 44 87 873 442753757 442754555 0.000000e+00 695.0
6 TraesCS3B01G368000 chr3D 78.499 1079 204 18 1000 2066 601618546 601617484 0.000000e+00 682.0
7 TraesCS3B01G368000 chr3D 92.157 204 15 1 2482 2685 305659922 305659720 1.390000e-73 287.0
8 TraesCS3B01G368000 chr3D 89.005 191 13 1 2719 2909 305659576 305659394 2.380000e-56 230.0
9 TraesCS3B01G368000 chr3D 91.000 100 9 0 2358 2457 442756251 442756350 5.330000e-28 135.0
10 TraesCS3B01G368000 chr3D 89.474 76 1 1 2243 2318 442755953 442756021 4.210000e-14 89.8
11 TraesCS3B01G368000 chr3A 92.149 1312 72 13 920 2200 583926628 583927939 0.000000e+00 1823.0
12 TraesCS3B01G368000 chr3A 80.590 814 59 48 109 874 583925857 583926619 1.250000e-148 536.0
13 TraesCS3B01G368000 chr3A 97.531 162 0 1 2908 3065 224357027 224357188 1.080000e-69 274.0
14 TraesCS3B01G368000 chr3A 97.531 162 0 1 2908 3065 728376028 728375867 1.080000e-69 274.0
15 TraesCS3B01G368000 chr3A 88.614 202 23 0 2484 2685 164275704 164275905 2.360000e-61 246.0
16 TraesCS3B01G368000 chr3A 94.118 51 1 2 3 53 690688131 690688083 3.280000e-10 76.8
17 TraesCS3B01G368000 chr3A 95.000 40 2 0 2719 2758 164276052 164276091 2.550000e-06 63.9
18 TraesCS3B01G368000 chr7B 91.074 661 42 9 548 1196 532456089 532455434 0.000000e+00 878.0
19 TraesCS3B01G368000 chr1B 81.094 1079 182 16 1001 2065 543021548 543020478 0.000000e+00 843.0
20 TraesCS3B01G368000 chr1B 97.561 164 0 1 2906 3065 500578366 500578529 8.370000e-71 278.0
21 TraesCS3B01G368000 chr1B 100.000 52 0 0 1 52 26886005 26885954 2.520000e-16 97.1
22 TraesCS3B01G368000 chr1D 80.798 1078 187 14 1001 2065 403708023 403706953 0.000000e+00 826.0
23 TraesCS3B01G368000 chr1A 80.741 1080 184 18 1001 2065 499195695 499194625 0.000000e+00 821.0
24 TraesCS3B01G368000 chr1A 98.592 426 6 0 2484 2909 65762949 65762524 0.000000e+00 754.0
25 TraesCS3B01G368000 chr1A 98.122 426 8 0 2484 2909 65132808 65133233 0.000000e+00 743.0
26 TraesCS3B01G368000 chr4B 98.126 427 8 0 2483 2909 22919297 22919723 0.000000e+00 745.0
27 TraesCS3B01G368000 chr4B 98.113 53 0 1 1 52 10714234 10714182 1.170000e-14 91.6
28 TraesCS3B01G368000 chr4D 73.333 1065 202 59 1056 2064 310111343 310110305 4.930000e-83 318.0
29 TraesCS3B01G368000 chr7A 97.531 162 0 1 2908 3065 448445341 448445180 1.080000e-69 274.0
30 TraesCS3B01G368000 chr6B 97.531 162 0 1 2908 3065 82549575 82549414 1.080000e-69 274.0
31 TraesCS3B01G368000 chr5B 95.930 172 1 3 2900 3065 271175365 271175194 1.080000e-69 274.0
32 TraesCS3B01G368000 chr5A 97.531 162 0 1 2908 3065 174068850 174069011 1.080000e-69 274.0
33 TraesCS3B01G368000 chr4A 76.553 499 95 18 1577 2064 164626509 164626996 1.410000e-63 254.0
34 TraesCS3B01G368000 chr2B 89.163 203 22 0 2483 2685 581431081 581431283 1.410000e-63 254.0
35 TraesCS3B01G368000 chr2B 89.286 196 13 1 2714 2909 581431419 581431606 3.950000e-59 239.0
36 TraesCS3B01G368000 chr2D 96.078 51 2 0 3 53 353063800 353063850 1.960000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G368000 chr3B 580204750 580207814 3064 False 5661.0 5661 100.00000 1 3065 1 chr3B.!!$F1 3064
1 TraesCS3B01G368000 chr3D 442753757 442756350 2593 False 721.2 1965 89.78925 87 2457 4 chr3D.!!$F1 2370
2 TraesCS3B01G368000 chr3D 601617484 601618546 1062 True 682.0 682 78.49900 1000 2066 1 chr3D.!!$R1 1066
3 TraesCS3B01G368000 chr3D 305659394 305659922 528 True 258.5 287 90.58100 2482 2909 2 chr3D.!!$R2 427
4 TraesCS3B01G368000 chr3A 583925857 583927939 2082 False 1179.5 1823 86.36950 109 2200 2 chr3A.!!$F3 2091
5 TraesCS3B01G368000 chr7B 532455434 532456089 655 True 878.0 878 91.07400 548 1196 1 chr7B.!!$R1 648
6 TraesCS3B01G368000 chr1B 543020478 543021548 1070 True 843.0 843 81.09400 1001 2065 1 chr1B.!!$R2 1064
7 TraesCS3B01G368000 chr1D 403706953 403708023 1070 True 826.0 826 80.79800 1001 2065 1 chr1D.!!$R1 1064
8 TraesCS3B01G368000 chr1A 499194625 499195695 1070 True 821.0 821 80.74100 1001 2065 1 chr1A.!!$R2 1064
9 TraesCS3B01G368000 chr4D 310110305 310111343 1038 True 318.0 318 73.33300 1056 2064 1 chr4D.!!$R1 1008
10 TraesCS3B01G368000 chr2B 581431081 581431606 525 False 246.5 254 89.22450 2483 2909 2 chr2B.!!$F1 426

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.034059 CTGCCACGTCCTCTGTTTCT 59.966 55.0 0.0 0.0 0.0 2.52 F
918 1049 0.322187 CCTCCCCCGTCAAATTCGTT 60.322 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 2258 1.298157 CGCCCGAGACAAAAGCATCA 61.298 55.0 0.0 0.0 0.0 3.07 R
2277 2586 0.035317 TGGATTGTGCGAGCAAGAGT 59.965 50.0 0.0 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.965858 CGCGATCGCCTCTCGGTC 62.966 72.222 32.63 4.00 44.55 4.79
22 23 4.632458 GATCGCCTCTCGGTCGCC 62.632 72.222 0.00 0.00 38.68 5.54
26 27 3.453679 GCCTCTCGGTCGCCTCTT 61.454 66.667 0.00 0.00 0.00 2.85
27 28 2.119655 GCCTCTCGGTCGCCTCTTA 61.120 63.158 0.00 0.00 0.00 2.10
28 29 2.026522 CCTCTCGGTCGCCTCTTAG 58.973 63.158 0.00 0.00 0.00 2.18
29 30 1.448922 CCTCTCGGTCGCCTCTTAGG 61.449 65.000 0.00 0.00 38.80 2.69
30 31 1.448922 CTCTCGGTCGCCTCTTAGGG 61.449 65.000 0.00 0.00 35.37 3.53
31 32 1.453379 CTCGGTCGCCTCTTAGGGA 60.453 63.158 0.00 0.00 35.37 4.20
32 33 1.000521 TCGGTCGCCTCTTAGGGAA 60.001 57.895 0.00 0.00 35.37 3.97
33 34 0.612732 TCGGTCGCCTCTTAGGGAAA 60.613 55.000 0.00 0.00 35.37 3.13
34 35 0.459759 CGGTCGCCTCTTAGGGAAAC 60.460 60.000 0.00 0.00 35.37 2.78
35 36 0.611714 GGTCGCCTCTTAGGGAAACA 59.388 55.000 0.00 0.00 35.37 2.83
36 37 1.405661 GGTCGCCTCTTAGGGAAACAG 60.406 57.143 0.00 0.00 35.37 3.16
37 38 1.549170 GTCGCCTCTTAGGGAAACAGA 59.451 52.381 0.00 0.00 35.37 3.41
38 39 2.028385 GTCGCCTCTTAGGGAAACAGAA 60.028 50.000 0.00 0.00 35.37 3.02
39 40 2.635915 TCGCCTCTTAGGGAAACAGAAA 59.364 45.455 0.00 0.00 35.37 2.52
40 41 2.742589 CGCCTCTTAGGGAAACAGAAAC 59.257 50.000 0.00 0.00 35.37 2.78
41 42 2.742589 GCCTCTTAGGGAAACAGAAACG 59.257 50.000 0.00 0.00 35.37 3.60
42 43 3.806157 GCCTCTTAGGGAAACAGAAACGT 60.806 47.826 0.00 0.00 35.37 3.99
43 44 3.746492 CCTCTTAGGGAAACAGAAACGTG 59.254 47.826 0.00 0.00 0.00 4.49
44 45 3.735591 TCTTAGGGAAACAGAAACGTGG 58.264 45.455 0.00 0.00 0.00 4.94
45 46 3.135167 TCTTAGGGAAACAGAAACGTGGT 59.865 43.478 0.00 0.00 0.00 4.16
46 47 1.675552 AGGGAAACAGAAACGTGGTG 58.324 50.000 0.00 0.00 0.00 4.17
47 48 0.666374 GGGAAACAGAAACGTGGTGG 59.334 55.000 0.00 0.00 0.00 4.61
48 49 1.670791 GGAAACAGAAACGTGGTGGA 58.329 50.000 0.00 0.00 0.00 4.02
49 50 1.332686 GGAAACAGAAACGTGGTGGAC 59.667 52.381 0.00 0.00 0.00 4.02
50 51 1.332686 GAAACAGAAACGTGGTGGACC 59.667 52.381 0.00 0.00 0.00 4.46
51 52 0.464916 AACAGAAACGTGGTGGACCC 60.465 55.000 0.00 0.00 34.29 4.46
52 53 1.959226 CAGAAACGTGGTGGACCCG 60.959 63.158 0.00 5.48 36.31 5.28
53 54 2.109593 GAAACGTGGTGGACCCGT 59.890 61.111 6.54 6.54 42.04 5.28
54 55 1.957695 GAAACGTGGTGGACCCGTC 60.958 63.158 11.24 0.00 40.33 4.79
63 64 3.316029 GGACCCGTCCCAGCATAA 58.684 61.111 2.16 0.00 43.94 1.90
64 65 1.153229 GGACCCGTCCCAGCATAAC 60.153 63.158 2.16 0.00 43.94 1.89
65 66 1.623542 GGACCCGTCCCAGCATAACT 61.624 60.000 2.16 0.00 43.94 2.24
66 67 1.117150 GACCCGTCCCAGCATAACTA 58.883 55.000 0.00 0.00 0.00 2.24
67 68 0.828677 ACCCGTCCCAGCATAACTAC 59.171 55.000 0.00 0.00 0.00 2.73
68 69 0.106149 CCCGTCCCAGCATAACTACC 59.894 60.000 0.00 0.00 0.00 3.18
69 70 0.249322 CCGTCCCAGCATAACTACCG 60.249 60.000 0.00 0.00 0.00 4.02
70 71 0.458669 CGTCCCAGCATAACTACCGT 59.541 55.000 0.00 0.00 0.00 4.83
71 72 1.535437 CGTCCCAGCATAACTACCGTC 60.535 57.143 0.00 0.00 0.00 4.79
72 73 1.117150 TCCCAGCATAACTACCGTCC 58.883 55.000 0.00 0.00 0.00 4.79
73 74 0.249322 CCCAGCATAACTACCGTCCG 60.249 60.000 0.00 0.00 0.00 4.79
74 75 0.874607 CCAGCATAACTACCGTCCGC 60.875 60.000 0.00 0.00 0.00 5.54
75 76 0.874607 CAGCATAACTACCGTCCGCC 60.875 60.000 0.00 0.00 0.00 6.13
76 77 1.041447 AGCATAACTACCGTCCGCCT 61.041 55.000 0.00 0.00 0.00 5.52
77 78 0.179092 GCATAACTACCGTCCGCCTT 60.179 55.000 0.00 0.00 0.00 4.35
78 79 1.067516 GCATAACTACCGTCCGCCTTA 59.932 52.381 0.00 0.00 0.00 2.69
79 80 2.288640 GCATAACTACCGTCCGCCTTAT 60.289 50.000 0.00 0.00 0.00 1.73
80 81 3.572584 CATAACTACCGTCCGCCTTATC 58.427 50.000 0.00 0.00 0.00 1.75
81 82 1.772836 AACTACCGTCCGCCTTATCT 58.227 50.000 0.00 0.00 0.00 1.98
82 83 1.772836 ACTACCGTCCGCCTTATCTT 58.227 50.000 0.00 0.00 0.00 2.40
83 84 2.105766 ACTACCGTCCGCCTTATCTTT 58.894 47.619 0.00 0.00 0.00 2.52
84 85 2.100418 ACTACCGTCCGCCTTATCTTTC 59.900 50.000 0.00 0.00 0.00 2.62
85 86 1.192428 ACCGTCCGCCTTATCTTTCT 58.808 50.000 0.00 0.00 0.00 2.52
103 104 0.034059 CTGCCACGTCCTCTGTTTCT 59.966 55.000 0.00 0.00 0.00 2.52
123 124 5.262588 TCTGATCGCTTATTAGTGCTCAA 57.737 39.130 1.13 0.00 36.80 3.02
419 461 1.679032 CCGAGACCAGAAATTCCCCAC 60.679 57.143 0.00 0.00 0.00 4.61
426 468 2.028748 CCAGAAATTCCCCACAGCAAAG 60.029 50.000 0.00 0.00 0.00 2.77
427 469 1.620323 AGAAATTCCCCACAGCAAAGC 59.380 47.619 0.00 0.00 0.00 3.51
428 470 1.344114 GAAATTCCCCACAGCAAAGCA 59.656 47.619 0.00 0.00 0.00 3.91
429 471 1.422531 AATTCCCCACAGCAAAGCAA 58.577 45.000 0.00 0.00 0.00 3.91
430 472 1.422531 ATTCCCCACAGCAAAGCAAA 58.577 45.000 0.00 0.00 0.00 3.68
474 516 3.068691 TTCCCTGCTCGCGCTAGT 61.069 61.111 10.92 0.00 36.97 2.57
490 532 1.207089 CTAGTTCACTGCCCGAATCCA 59.793 52.381 0.00 0.00 0.00 3.41
603 681 4.675029 CGGCCGGTTTCACCTCGT 62.675 66.667 20.10 0.00 35.66 4.18
658 736 2.632377 CCGTCCTCGTGGTAAGTACTA 58.368 52.381 2.99 0.00 35.01 1.82
659 737 2.352960 CCGTCCTCGTGGTAAGTACTAC 59.647 54.545 2.99 0.00 34.75 2.73
660 738 3.002791 CGTCCTCGTGGTAAGTACTACA 58.997 50.000 2.99 0.00 37.51 2.74
742 853 3.788333 CATGGATGGATTTTTGCTCGT 57.212 42.857 0.00 0.00 0.00 4.18
743 854 3.699067 CATGGATGGATTTTTGCTCGTC 58.301 45.455 0.00 0.00 0.00 4.20
744 855 2.091541 TGGATGGATTTTTGCTCGTCC 58.908 47.619 0.00 0.00 0.00 4.79
745 856 1.405463 GGATGGATTTTTGCTCGTCCC 59.595 52.381 0.00 0.00 0.00 4.46
746 857 1.064060 GATGGATTTTTGCTCGTCCCG 59.936 52.381 0.00 0.00 0.00 5.14
747 858 1.136774 GGATTTTTGCTCGTCCCGC 59.863 57.895 0.00 0.00 0.00 6.13
748 859 1.582610 GGATTTTTGCTCGTCCCGCA 61.583 55.000 0.00 0.00 35.22 5.69
749 860 0.454452 GATTTTTGCTCGTCCCGCAC 60.454 55.000 0.00 0.00 37.07 5.34
758 869 4.025401 GTCCCGCACGCCTGTTTG 62.025 66.667 0.00 0.00 0.00 2.93
759 870 4.555709 TCCCGCACGCCTGTTTGT 62.556 61.111 0.00 0.00 0.00 2.83
760 871 4.326766 CCCGCACGCCTGTTTGTG 62.327 66.667 0.00 0.00 39.10 3.33
761 872 3.582120 CCGCACGCCTGTTTGTGT 61.582 61.111 0.00 0.00 38.36 3.72
782 893 4.816385 TGTTTTGTGTGGAGAGATTCAGTC 59.184 41.667 0.00 0.00 0.00 3.51
810 936 4.451096 TGTAGAGACAATTTTTCTGGCGTC 59.549 41.667 0.00 0.00 30.68 5.19
918 1049 0.322187 CCTCCCCCGTCAAATTCGTT 60.322 55.000 0.00 0.00 0.00 3.85
986 1216 1.779569 CTGGTTCGTTCGTAGCAGTT 58.220 50.000 17.85 0.00 35.67 3.16
1311 1547 2.282180 ACCATCGCCAAGCCGTTT 60.282 55.556 0.00 0.00 0.00 3.60
2091 2384 2.270352 TGAGGTGTTTGTGGATGGAC 57.730 50.000 0.00 0.00 0.00 4.02
2118 2416 2.925306 GCTTTTGCAGTGCTTCTCATGG 60.925 50.000 17.60 0.02 46.58 3.66
2119 2417 2.275134 TTTGCAGTGCTTCTCATGGA 57.725 45.000 17.60 0.00 0.00 3.41
2200 2509 4.272018 GCTGCATTACTAGTTGACAGATGG 59.728 45.833 16.53 0.77 0.00 3.51
2201 2510 4.769688 TGCATTACTAGTTGACAGATGGG 58.230 43.478 0.00 0.00 0.00 4.00
2202 2511 4.225042 TGCATTACTAGTTGACAGATGGGT 59.775 41.667 0.00 0.00 0.00 4.51
2203 2512 5.186198 GCATTACTAGTTGACAGATGGGTT 58.814 41.667 0.00 0.00 0.00 4.11
2204 2513 5.648092 GCATTACTAGTTGACAGATGGGTTT 59.352 40.000 0.00 0.00 0.00 3.27
2205 2514 6.821665 GCATTACTAGTTGACAGATGGGTTTA 59.178 38.462 0.00 0.00 0.00 2.01
2206 2515 7.201617 GCATTACTAGTTGACAGATGGGTTTAC 60.202 40.741 0.00 0.00 0.00 2.01
2207 2516 5.818678 ACTAGTTGACAGATGGGTTTACA 57.181 39.130 0.00 0.00 0.00 2.41
2208 2517 6.374417 ACTAGTTGACAGATGGGTTTACAT 57.626 37.500 0.00 0.00 0.00 2.29
2209 2518 7.490657 ACTAGTTGACAGATGGGTTTACATA 57.509 36.000 0.00 0.00 0.00 2.29
2210 2519 8.090788 ACTAGTTGACAGATGGGTTTACATAT 57.909 34.615 0.00 0.00 0.00 1.78
2211 2520 9.209048 ACTAGTTGACAGATGGGTTTACATATA 57.791 33.333 0.00 0.00 0.00 0.86
2213 2522 8.908786 AGTTGACAGATGGGTTTACATATATG 57.091 34.615 11.29 11.29 0.00 1.78
2214 2523 7.445402 AGTTGACAGATGGGTTTACATATATGC 59.555 37.037 12.79 0.00 0.00 3.14
2215 2524 7.078249 TGACAGATGGGTTTACATATATGCT 57.922 36.000 12.79 3.21 0.00 3.79
2216 2525 7.161404 TGACAGATGGGTTTACATATATGCTC 58.839 38.462 12.79 0.00 0.00 4.26
2217 2526 7.078249 ACAGATGGGTTTACATATATGCTCA 57.922 36.000 12.79 3.02 0.00 4.26
2218 2527 7.693132 ACAGATGGGTTTACATATATGCTCAT 58.307 34.615 12.79 7.76 0.00 2.90
2219 2528 7.826252 ACAGATGGGTTTACATATATGCTCATC 59.174 37.037 16.98 16.98 0.00 2.92
2220 2529 7.825761 CAGATGGGTTTACATATATGCTCATCA 59.174 37.037 22.52 12.51 32.32 3.07
2221 2530 8.045507 AGATGGGTTTACATATATGCTCATCAG 58.954 37.037 22.52 0.00 32.32 2.90
2230 2539 3.747266 GCTCATCAGCTCATGGGC 58.253 61.111 6.72 6.72 43.01 5.36
2232 2541 3.008141 CTCATCAGCTCATGGGCAG 57.992 57.895 22.09 12.86 34.17 4.85
2233 2542 0.468648 CTCATCAGCTCATGGGCAGA 59.531 55.000 22.09 18.79 32.65 4.26
2234 2543 0.468648 TCATCAGCTCATGGGCAGAG 59.531 55.000 22.09 11.24 31.69 3.35
2235 2544 0.180642 CATCAGCTCATGGGCAGAGT 59.819 55.000 22.09 4.76 35.55 3.24
2236 2545 0.180642 ATCAGCTCATGGGCAGAGTG 59.819 55.000 22.09 9.45 35.55 3.51
2237 2546 2.113433 CAGCTCATGGGCAGAGTGC 61.113 63.158 22.09 0.00 44.08 4.40
2238 2547 2.271497 GCTCATGGGCAGAGTGCT 59.729 61.111 14.19 0.00 44.28 4.40
2239 2548 2.113433 GCTCATGGGCAGAGTGCTG 61.113 63.158 14.19 0.00 44.28 4.41
2240 2549 1.451567 CTCATGGGCAGAGTGCTGG 60.452 63.158 0.00 0.00 44.28 4.85
2253 2562 1.002366 GTGCTGGCGTCTTATCTGTG 58.998 55.000 0.00 0.00 0.00 3.66
2272 2581 1.659794 GCGTTTGGGTGCAATCTGT 59.340 52.632 0.00 0.00 0.00 3.41
2273 2582 0.387239 GCGTTTGGGTGCAATCTGTC 60.387 55.000 0.00 0.00 0.00 3.51
2274 2583 1.238439 CGTTTGGGTGCAATCTGTCT 58.762 50.000 0.00 0.00 0.00 3.41
2275 2584 1.608590 CGTTTGGGTGCAATCTGTCTT 59.391 47.619 0.00 0.00 0.00 3.01
2276 2585 2.605338 CGTTTGGGTGCAATCTGTCTTG 60.605 50.000 0.00 0.00 0.00 3.02
2277 2586 2.622942 GTTTGGGTGCAATCTGTCTTGA 59.377 45.455 0.00 0.00 0.00 3.02
2278 2587 1.896220 TGGGTGCAATCTGTCTTGAC 58.104 50.000 0.00 0.00 0.00 3.18
2369 2868 9.331282 GCTTCCAATGTAAATAACTAGTCAGAT 57.669 33.333 0.00 0.00 0.00 2.90
2406 2905 3.465871 CAGCTCTAGGAAGAAATCAGGC 58.534 50.000 0.00 0.00 0.00 4.85
2409 2908 3.370953 GCTCTAGGAAGAAATCAGGCCAA 60.371 47.826 5.01 0.00 0.00 4.52
2417 2916 5.242615 GGAAGAAATCAGGCCAATAGATTCC 59.757 44.000 5.01 6.65 31.21 3.01
2423 2922 1.202698 AGGCCAATAGATTCCGACTGC 60.203 52.381 5.01 0.00 0.00 4.40
2425 2924 1.599542 GCCAATAGATTCCGACTGCAC 59.400 52.381 0.00 0.00 0.00 4.57
2457 2956 3.522553 GCTCTCTACGGCATTTTACAGT 58.477 45.455 0.00 0.00 0.00 3.55
2458 2957 4.679662 GCTCTCTACGGCATTTTACAGTA 58.320 43.478 0.00 0.00 0.00 2.74
2459 2958 4.740695 GCTCTCTACGGCATTTTACAGTAG 59.259 45.833 0.00 0.00 36.91 2.57
2460 2959 4.679662 TCTCTACGGCATTTTACAGTAGC 58.320 43.478 0.00 0.00 35.90 3.58
2461 2960 4.401519 TCTCTACGGCATTTTACAGTAGCT 59.598 41.667 0.00 0.00 35.90 3.32
2462 2961 5.080969 TCTACGGCATTTTACAGTAGCTT 57.919 39.130 0.00 0.00 35.90 3.74
2463 2962 5.107133 TCTACGGCATTTTACAGTAGCTTC 58.893 41.667 0.00 0.00 35.90 3.86
2464 2963 3.939066 ACGGCATTTTACAGTAGCTTCT 58.061 40.909 0.00 0.00 0.00 2.85
2465 2964 5.080969 ACGGCATTTTACAGTAGCTTCTA 57.919 39.130 0.00 0.00 0.00 2.10
2466 2965 5.671493 ACGGCATTTTACAGTAGCTTCTAT 58.329 37.500 0.00 0.00 0.00 1.98
2467 2966 6.812998 ACGGCATTTTACAGTAGCTTCTATA 58.187 36.000 0.00 0.00 0.00 1.31
2468 2967 6.700520 ACGGCATTTTACAGTAGCTTCTATAC 59.299 38.462 0.00 0.00 0.00 1.47
2469 2968 6.924060 CGGCATTTTACAGTAGCTTCTATACT 59.076 38.462 0.00 0.00 33.74 2.12
2475 2974 4.582701 CAGTAGCTTCTATACTGCAGCT 57.417 45.455 15.27 5.78 42.54 4.24
2476 2975 5.697473 CAGTAGCTTCTATACTGCAGCTA 57.303 43.478 15.27 4.66 42.54 3.32
2477 2976 6.266168 CAGTAGCTTCTATACTGCAGCTAT 57.734 41.667 15.27 13.02 44.59 2.97
2478 2977 6.686630 CAGTAGCTTCTATACTGCAGCTATT 58.313 40.000 15.27 1.42 44.59 1.73
2479 2978 6.585702 CAGTAGCTTCTATACTGCAGCTATTG 59.414 42.308 15.27 10.65 44.59 1.90
2480 2979 5.798125 AGCTTCTATACTGCAGCTATTGA 57.202 39.130 15.27 13.50 40.92 2.57
2487 2986 1.207390 CTGCAGCTATTGACGAGAGC 58.793 55.000 0.00 0.69 42.95 4.09
2500 2999 1.782181 GAGAGCGGCGAAAGAACAC 59.218 57.895 12.98 0.00 0.00 3.32
2524 3023 1.226717 CTCGCTTGCTCTCGGTACC 60.227 63.158 0.16 0.16 0.00 3.34
2605 3104 0.247185 GGATACAACCGGTCGGACAA 59.753 55.000 16.90 0.00 38.96 3.18
2608 3107 3.243975 GGATACAACCGGTCGGACAATAT 60.244 47.826 16.90 7.91 38.96 1.28
2613 3112 3.447918 ACCGGTCGGACAATATTGTAG 57.552 47.619 20.83 16.97 42.43 2.74
2614 3113 3.025978 ACCGGTCGGACAATATTGTAGA 58.974 45.455 20.83 18.80 42.43 2.59
2633 3132 1.745489 GTGACGGCTCCATCCAACC 60.745 63.158 0.00 0.00 0.00 3.77
2655 3154 2.212983 CGACGCGATGACGGTACAC 61.213 63.158 15.93 0.00 40.15 2.90
2702 3212 7.227314 ACATGTATCACATAATGATTTGCGACT 59.773 33.333 0.00 0.00 46.54 4.18
2727 3336 4.129737 CGTCTCCGGACACCGCAT 62.130 66.667 0.00 0.00 46.86 4.73
2757 3366 1.638467 GCTCAAAGCTATGGCGACG 59.362 57.895 0.00 0.00 44.37 5.12
2758 3367 0.806102 GCTCAAAGCTATGGCGACGA 60.806 55.000 0.00 0.00 44.37 4.20
2759 3368 1.203928 CTCAAAGCTATGGCGACGAG 58.796 55.000 0.00 0.00 44.37 4.18
2789 3398 2.659428 GAGGCAACAGGCTATGGATTT 58.341 47.619 0.00 0.00 44.01 2.17
2800 3409 6.769822 ACAGGCTATGGATTTAAGTTCTCATG 59.230 38.462 0.00 0.00 0.00 3.07
2803 3412 7.071698 AGGCTATGGATTTAAGTTCTCATGAGA 59.928 37.037 21.67 21.67 35.27 3.27
2909 3518 2.832129 TCTACGTTTGAGCAGATTCCCT 59.168 45.455 0.00 0.00 0.00 4.20
2910 3519 1.813513 ACGTTTGAGCAGATTCCCTG 58.186 50.000 0.00 0.00 45.67 4.45
2911 3520 1.072331 ACGTTTGAGCAGATTCCCTGT 59.928 47.619 0.00 0.00 44.71 4.00
2912 3521 2.301870 ACGTTTGAGCAGATTCCCTGTA 59.698 45.455 0.00 0.00 44.71 2.74
2913 3522 3.244422 ACGTTTGAGCAGATTCCCTGTAA 60.244 43.478 0.00 0.00 44.71 2.41
2914 3523 3.372206 CGTTTGAGCAGATTCCCTGTAAG 59.628 47.826 0.00 0.00 44.71 2.34
2915 3524 4.579869 GTTTGAGCAGATTCCCTGTAAGA 58.420 43.478 0.00 0.00 44.71 2.10
2916 3525 3.895232 TGAGCAGATTCCCTGTAAGAC 57.105 47.619 0.00 0.00 44.71 3.01
2917 3526 3.173151 TGAGCAGATTCCCTGTAAGACA 58.827 45.455 0.00 0.00 44.71 3.41
2918 3527 3.582647 TGAGCAGATTCCCTGTAAGACAA 59.417 43.478 0.00 0.00 44.71 3.18
2919 3528 4.225942 TGAGCAGATTCCCTGTAAGACAAT 59.774 41.667 0.00 0.00 44.71 2.71
2920 3529 5.425217 TGAGCAGATTCCCTGTAAGACAATA 59.575 40.000 0.00 0.00 44.71 1.90
2921 3530 6.070251 TGAGCAGATTCCCTGTAAGACAATAA 60.070 38.462 0.00 0.00 44.71 1.40
2922 3531 6.352516 AGCAGATTCCCTGTAAGACAATAAG 58.647 40.000 0.00 0.00 44.71 1.73
2923 3532 6.069963 AGCAGATTCCCTGTAAGACAATAAGT 60.070 38.462 0.00 0.00 44.71 2.24
2924 3533 6.599638 GCAGATTCCCTGTAAGACAATAAGTT 59.400 38.462 0.00 0.00 44.71 2.66
2925 3534 7.121315 GCAGATTCCCTGTAAGACAATAAGTTT 59.879 37.037 0.00 0.00 44.71 2.66
2926 3535 9.014297 CAGATTCCCTGTAAGACAATAAGTTTT 57.986 33.333 0.00 0.00 38.10 2.43
2927 3536 9.014297 AGATTCCCTGTAAGACAATAAGTTTTG 57.986 33.333 0.00 0.00 34.07 2.44
2928 3537 7.519032 TTCCCTGTAAGACAATAAGTTTTGG 57.481 36.000 0.00 0.00 34.07 3.28
2929 3538 6.007703 TCCCTGTAAGACAATAAGTTTTGGG 58.992 40.000 0.00 0.00 34.07 4.12
2930 3539 5.185056 CCCTGTAAGACAATAAGTTTTGGGG 59.815 44.000 0.00 0.00 34.07 4.96
2931 3540 6.007703 CCTGTAAGACAATAAGTTTTGGGGA 58.992 40.000 0.00 0.00 34.07 4.81
2932 3541 6.492087 CCTGTAAGACAATAAGTTTTGGGGAA 59.508 38.462 0.00 0.00 34.07 3.97
2933 3542 7.279750 TGTAAGACAATAAGTTTTGGGGAAC 57.720 36.000 0.00 0.00 0.00 3.62
2934 3543 7.523216 CTGTAAGACAATAAGTTTTGGGGAACC 60.523 40.741 0.00 0.00 46.42 3.62
2946 3555 4.081050 GGAACCAGCACAACCCTC 57.919 61.111 0.00 0.00 0.00 4.30
2947 3556 1.456287 GGAACCAGCACAACCCTCT 59.544 57.895 0.00 0.00 0.00 3.69
2948 3557 0.690762 GGAACCAGCACAACCCTCTA 59.309 55.000 0.00 0.00 0.00 2.43
2949 3558 1.339151 GGAACCAGCACAACCCTCTAG 60.339 57.143 0.00 0.00 0.00 2.43
2950 3559 0.693049 AACCAGCACAACCCTCTAGG 59.307 55.000 0.00 0.00 43.78 3.02
2962 3571 2.407340 CCTCTAGGGGTGGCTTATCT 57.593 55.000 0.00 0.00 0.00 1.98
2963 3572 2.252714 CCTCTAGGGGTGGCTTATCTC 58.747 57.143 0.00 0.00 0.00 2.75
2964 3573 2.426414 CCTCTAGGGGTGGCTTATCTCA 60.426 54.545 0.00 0.00 0.00 3.27
2965 3574 3.515562 CTCTAGGGGTGGCTTATCTCAT 58.484 50.000 0.00 0.00 0.00 2.90
2966 3575 3.906846 CTCTAGGGGTGGCTTATCTCATT 59.093 47.826 0.00 0.00 0.00 2.57
2967 3576 5.087323 CTCTAGGGGTGGCTTATCTCATTA 58.913 45.833 0.00 0.00 0.00 1.90
2968 3577 5.665701 TCTAGGGGTGGCTTATCTCATTAT 58.334 41.667 0.00 0.00 0.00 1.28
2969 3578 6.811574 TCTAGGGGTGGCTTATCTCATTATA 58.188 40.000 0.00 0.00 0.00 0.98
2970 3579 7.430844 TCTAGGGGTGGCTTATCTCATTATAT 58.569 38.462 0.00 0.00 0.00 0.86
2971 3580 8.574853 TCTAGGGGTGGCTTATCTCATTATATA 58.425 37.037 0.00 0.00 0.00 0.86
2972 3581 9.386122 CTAGGGGTGGCTTATCTCATTATATAT 57.614 37.037 0.00 0.00 0.00 0.86
2974 3583 9.744125 AGGGGTGGCTTATCTCATTATATATAA 57.256 33.333 7.62 7.62 0.00 0.98
2997 3606 9.688091 ATAATGGTTGTGTTACAATATGTACCA 57.312 29.630 0.00 0.00 40.59 3.25
2998 3607 8.588290 AATGGTTGTGTTACAATATGTACCAT 57.412 30.769 7.28 7.28 41.43 3.55
2999 3608 9.688091 AATGGTTGTGTTACAATATGTACCATA 57.312 29.630 11.64 0.00 39.79 2.74
3000 3609 9.860650 ATGGTTGTGTTACAATATGTACCATAT 57.139 29.630 10.20 0.00 39.26 1.78
3031 3640 9.233649 ACATAGGTACAGAAGCTATACATAGTC 57.766 37.037 0.00 0.00 45.12 2.59
3032 3641 9.456147 CATAGGTACAGAAGCTATACATAGTCT 57.544 37.037 0.00 0.00 45.12 3.24
3035 3644 9.287373 AGGTACAGAAGCTATACATAGTCTAAC 57.713 37.037 0.00 0.00 32.98 2.34
3036 3645 9.064706 GGTACAGAAGCTATACATAGTCTAACA 57.935 37.037 0.00 0.00 32.96 2.41
3037 3646 9.881529 GTACAGAAGCTATACATAGTCTAACAC 57.118 37.037 0.00 0.00 32.96 3.32
3038 3647 7.942990 ACAGAAGCTATACATAGTCTAACACC 58.057 38.462 0.00 0.00 32.96 4.16
3039 3648 7.014422 ACAGAAGCTATACATAGTCTAACACCC 59.986 40.741 0.00 0.00 32.96 4.61
3040 3649 7.231722 CAGAAGCTATACATAGTCTAACACCCT 59.768 40.741 0.00 0.00 32.96 4.34
3041 3650 7.449086 AGAAGCTATACATAGTCTAACACCCTC 59.551 40.741 0.00 0.00 32.96 4.30
3042 3651 6.611785 AGCTATACATAGTCTAACACCCTCA 58.388 40.000 0.00 0.00 32.96 3.86
3043 3652 7.067421 AGCTATACATAGTCTAACACCCTCAA 58.933 38.462 0.00 0.00 32.96 3.02
3044 3653 7.730784 AGCTATACATAGTCTAACACCCTCAAT 59.269 37.037 0.00 0.00 32.96 2.57
3045 3654 8.030106 GCTATACATAGTCTAACACCCTCAATC 58.970 40.741 0.00 0.00 32.96 2.67
3046 3655 9.303116 CTATACATAGTCTAACACCCTCAATCT 57.697 37.037 0.00 0.00 0.00 2.40
3047 3656 6.875972 ACATAGTCTAACACCCTCAATCTT 57.124 37.500 0.00 0.00 0.00 2.40
3048 3657 7.973048 ACATAGTCTAACACCCTCAATCTTA 57.027 36.000 0.00 0.00 0.00 2.10
3049 3658 8.012957 ACATAGTCTAACACCCTCAATCTTAG 57.987 38.462 0.00 0.00 0.00 2.18
3050 3659 5.346181 AGTCTAACACCCTCAATCTTAGC 57.654 43.478 0.00 0.00 0.00 3.09
3051 3660 4.162509 AGTCTAACACCCTCAATCTTAGCC 59.837 45.833 0.00 0.00 0.00 3.93
3052 3661 4.081087 GTCTAACACCCTCAATCTTAGCCA 60.081 45.833 0.00 0.00 0.00 4.75
3053 3662 2.789409 ACACCCTCAATCTTAGCCAC 57.211 50.000 0.00 0.00 0.00 5.01
3054 3663 2.269940 ACACCCTCAATCTTAGCCACT 58.730 47.619 0.00 0.00 0.00 4.00
3055 3664 2.644798 ACACCCTCAATCTTAGCCACTT 59.355 45.455 0.00 0.00 0.00 3.16
3056 3665 3.074538 ACACCCTCAATCTTAGCCACTTT 59.925 43.478 0.00 0.00 0.00 2.66
3057 3666 3.691609 CACCCTCAATCTTAGCCACTTTC 59.308 47.826 0.00 0.00 0.00 2.62
3058 3667 3.589288 ACCCTCAATCTTAGCCACTTTCT 59.411 43.478 0.00 0.00 0.00 2.52
3059 3668 4.783227 ACCCTCAATCTTAGCCACTTTCTA 59.217 41.667 0.00 0.00 0.00 2.10
3060 3669 5.250774 ACCCTCAATCTTAGCCACTTTCTAA 59.749 40.000 0.00 0.00 0.00 2.10
3061 3670 6.180472 CCCTCAATCTTAGCCACTTTCTAAA 58.820 40.000 0.00 0.00 0.00 1.85
3062 3671 6.317391 CCCTCAATCTTAGCCACTTTCTAAAG 59.683 42.308 0.90 0.90 41.73 1.85
3063 3672 7.106239 CCTCAATCTTAGCCACTTTCTAAAGA 58.894 38.462 9.37 0.00 39.31 2.52
3064 3673 7.607991 CCTCAATCTTAGCCACTTTCTAAAGAA 59.392 37.037 9.37 0.00 39.31 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.448922 CCCTAAGAGGCGACCGAGAG 61.449 65.000 0.00 0.00 32.73 3.20
12 13 1.453379 CCCTAAGAGGCGACCGAGA 60.453 63.158 0.00 0.00 32.73 4.04
13 14 1.035932 TTCCCTAAGAGGCGACCGAG 61.036 60.000 0.00 0.00 32.73 4.63
14 15 0.612732 TTTCCCTAAGAGGCGACCGA 60.613 55.000 0.00 0.00 32.73 4.69
15 16 0.459759 GTTTCCCTAAGAGGCGACCG 60.460 60.000 0.00 0.00 32.73 4.79
16 17 0.611714 TGTTTCCCTAAGAGGCGACC 59.388 55.000 0.00 0.00 32.73 4.79
17 18 1.549170 TCTGTTTCCCTAAGAGGCGAC 59.451 52.381 0.00 0.00 32.73 5.19
18 19 1.933021 TCTGTTTCCCTAAGAGGCGA 58.067 50.000 0.00 0.00 32.73 5.54
19 20 2.742589 GTTTCTGTTTCCCTAAGAGGCG 59.257 50.000 0.00 0.00 32.73 5.52
20 21 2.742589 CGTTTCTGTTTCCCTAAGAGGC 59.257 50.000 0.00 0.00 32.73 4.70
21 22 3.746492 CACGTTTCTGTTTCCCTAAGAGG 59.254 47.826 0.00 0.00 34.30 3.69
22 23 3.746492 CCACGTTTCTGTTTCCCTAAGAG 59.254 47.826 0.00 0.00 0.00 2.85
23 24 3.135167 ACCACGTTTCTGTTTCCCTAAGA 59.865 43.478 0.00 0.00 0.00 2.10
24 25 3.250040 CACCACGTTTCTGTTTCCCTAAG 59.750 47.826 0.00 0.00 0.00 2.18
25 26 3.207778 CACCACGTTTCTGTTTCCCTAA 58.792 45.455 0.00 0.00 0.00 2.69
26 27 2.485835 CCACCACGTTTCTGTTTCCCTA 60.486 50.000 0.00 0.00 0.00 3.53
27 28 1.675552 CACCACGTTTCTGTTTCCCT 58.324 50.000 0.00 0.00 0.00 4.20
28 29 0.666374 CCACCACGTTTCTGTTTCCC 59.334 55.000 0.00 0.00 0.00 3.97
29 30 1.332686 GTCCACCACGTTTCTGTTTCC 59.667 52.381 0.00 0.00 0.00 3.13
30 31 1.332686 GGTCCACCACGTTTCTGTTTC 59.667 52.381 0.00 0.00 35.64 2.78
31 32 1.385528 GGTCCACCACGTTTCTGTTT 58.614 50.000 0.00 0.00 35.64 2.83
32 33 0.464916 GGGTCCACCACGTTTCTGTT 60.465 55.000 0.00 0.00 39.85 3.16
33 34 1.147600 GGGTCCACCACGTTTCTGT 59.852 57.895 0.00 0.00 39.85 3.41
34 35 1.959226 CGGGTCCACCACGTTTCTG 60.959 63.158 0.00 0.00 40.22 3.02
35 36 2.373434 GACGGGTCCACCACGTTTCT 62.373 60.000 11.88 0.00 40.94 2.52
36 37 1.957695 GACGGGTCCACCACGTTTC 60.958 63.158 11.88 0.39 40.94 2.78
37 38 2.109593 GACGGGTCCACCACGTTT 59.890 61.111 11.88 0.00 40.94 3.60
47 48 1.117150 TAGTTATGCTGGGACGGGTC 58.883 55.000 0.00 0.00 33.56 4.46
48 49 0.828677 GTAGTTATGCTGGGACGGGT 59.171 55.000 0.00 0.00 33.56 5.28
49 50 0.106149 GGTAGTTATGCTGGGACGGG 59.894 60.000 0.00 0.00 33.56 5.28
50 51 0.249322 CGGTAGTTATGCTGGGACGG 60.249 60.000 0.00 0.00 38.10 4.79
51 52 0.458669 ACGGTAGTTATGCTGGGACG 59.541 55.000 0.00 0.00 0.00 4.79
52 53 1.202498 GGACGGTAGTTATGCTGGGAC 60.202 57.143 0.00 0.00 0.00 4.46
53 54 1.117150 GGACGGTAGTTATGCTGGGA 58.883 55.000 0.00 0.00 0.00 4.37
54 55 0.249322 CGGACGGTAGTTATGCTGGG 60.249 60.000 0.00 0.00 0.00 4.45
55 56 0.874607 GCGGACGGTAGTTATGCTGG 60.875 60.000 0.00 0.00 0.00 4.85
56 57 0.874607 GGCGGACGGTAGTTATGCTG 60.875 60.000 0.00 0.00 0.00 4.41
57 58 1.041447 AGGCGGACGGTAGTTATGCT 61.041 55.000 0.00 0.00 0.00 3.79
58 59 0.179092 AAGGCGGACGGTAGTTATGC 60.179 55.000 0.00 0.00 0.00 3.14
59 60 3.255149 AGATAAGGCGGACGGTAGTTATG 59.745 47.826 0.00 0.00 0.00 1.90
60 61 3.494332 AGATAAGGCGGACGGTAGTTAT 58.506 45.455 0.00 0.00 0.00 1.89
61 62 2.936202 AGATAAGGCGGACGGTAGTTA 58.064 47.619 0.00 0.00 0.00 2.24
62 63 1.772836 AGATAAGGCGGACGGTAGTT 58.227 50.000 0.00 0.00 0.00 2.24
63 64 1.772836 AAGATAAGGCGGACGGTAGT 58.227 50.000 0.00 0.00 0.00 2.73
64 65 2.361438 AGAAAGATAAGGCGGACGGTAG 59.639 50.000 0.00 0.00 0.00 3.18
65 66 2.100252 CAGAAAGATAAGGCGGACGGTA 59.900 50.000 0.00 0.00 0.00 4.02
66 67 1.134788 CAGAAAGATAAGGCGGACGGT 60.135 52.381 0.00 0.00 0.00 4.83
67 68 1.571919 CAGAAAGATAAGGCGGACGG 58.428 55.000 0.00 0.00 0.00 4.79
68 69 0.931005 GCAGAAAGATAAGGCGGACG 59.069 55.000 0.00 0.00 0.00 4.79
69 70 1.300481 GGCAGAAAGATAAGGCGGAC 58.700 55.000 0.00 0.00 0.00 4.79
70 71 0.908910 TGGCAGAAAGATAAGGCGGA 59.091 50.000 0.00 0.00 0.00 5.54
71 72 1.017387 GTGGCAGAAAGATAAGGCGG 58.983 55.000 0.00 0.00 0.00 6.13
72 73 0.652592 CGTGGCAGAAAGATAAGGCG 59.347 55.000 0.00 0.00 0.00 5.52
73 74 1.666189 GACGTGGCAGAAAGATAAGGC 59.334 52.381 0.00 0.00 0.00 4.35
74 75 2.093447 AGGACGTGGCAGAAAGATAAGG 60.093 50.000 0.00 0.00 0.00 2.69
75 76 3.118956 AGAGGACGTGGCAGAAAGATAAG 60.119 47.826 0.00 0.00 0.00 1.73
76 77 2.832129 AGAGGACGTGGCAGAAAGATAA 59.168 45.455 0.00 0.00 0.00 1.75
77 78 2.166459 CAGAGGACGTGGCAGAAAGATA 59.834 50.000 0.00 0.00 0.00 1.98
78 79 1.066573 CAGAGGACGTGGCAGAAAGAT 60.067 52.381 0.00 0.00 0.00 2.40
79 80 0.318441 CAGAGGACGTGGCAGAAAGA 59.682 55.000 0.00 0.00 0.00 2.52
80 81 0.034059 ACAGAGGACGTGGCAGAAAG 59.966 55.000 0.00 0.00 0.00 2.62
81 82 0.468226 AACAGAGGACGTGGCAGAAA 59.532 50.000 0.00 0.00 0.00 2.52
82 83 0.468226 AAACAGAGGACGTGGCAGAA 59.532 50.000 0.00 0.00 0.00 3.02
83 84 0.033504 GAAACAGAGGACGTGGCAGA 59.966 55.000 0.00 0.00 0.00 4.26
84 85 0.034059 AGAAACAGAGGACGTGGCAG 59.966 55.000 0.00 0.00 0.00 4.85
85 86 0.249868 CAGAAACAGAGGACGTGGCA 60.250 55.000 0.00 0.00 0.00 4.92
103 104 5.847304 AGATTGAGCACTAATAAGCGATCA 58.153 37.500 0.00 0.00 28.74 2.92
123 124 5.805994 CCTTCGCTTTTACTACGAGAAAGAT 59.194 40.000 0.00 0.00 37.11 2.40
200 202 2.520020 TGACCGGGTCACTCACGT 60.520 61.111 25.53 0.00 41.99 4.49
227 232 1.959042 TACGTGGATAGACTCGGGTC 58.041 55.000 7.56 7.56 42.41 4.46
263 283 2.125991 CGCACGGGCCTACGTTAA 60.126 61.111 2.82 0.00 46.25 2.01
419 461 1.342174 AGGATGTGGTTTGCTTTGCTG 59.658 47.619 0.00 0.00 0.00 4.41
426 468 1.177401 GGGAAGAGGATGTGGTTTGC 58.823 55.000 0.00 0.00 0.00 3.68
427 469 1.355720 AGGGGAAGAGGATGTGGTTTG 59.644 52.381 0.00 0.00 0.00 2.93
428 470 1.636003 GAGGGGAAGAGGATGTGGTTT 59.364 52.381 0.00 0.00 0.00 3.27
429 471 1.290134 GAGGGGAAGAGGATGTGGTT 58.710 55.000 0.00 0.00 0.00 3.67
430 472 0.621862 GGAGGGGAAGAGGATGTGGT 60.622 60.000 0.00 0.00 0.00 4.16
471 513 1.271856 TGGATTCGGGCAGTGAACTA 58.728 50.000 0.00 0.00 0.00 2.24
474 516 1.533625 CTTTGGATTCGGGCAGTGAA 58.466 50.000 0.00 0.00 0.00 3.18
598 676 1.401018 GGCGAAAACAATGGAACGAGG 60.401 52.381 0.00 0.00 0.00 4.63
603 681 1.287503 GGCGGCGAAAACAATGGAA 59.712 52.632 12.98 0.00 0.00 3.53
658 736 2.787994 CAGATGAACCAAGAAGGCTGT 58.212 47.619 0.00 0.00 43.14 4.40
659 737 1.471684 GCAGATGAACCAAGAAGGCTG 59.528 52.381 0.00 0.00 43.14 4.85
660 738 1.615384 GGCAGATGAACCAAGAAGGCT 60.615 52.381 0.00 0.00 43.14 4.58
741 852 4.025401 CAAACAGGCGTGCGGGAC 62.025 66.667 6.26 0.00 0.00 4.46
742 853 4.555709 ACAAACAGGCGTGCGGGA 62.556 61.111 6.26 0.00 0.00 5.14
743 854 4.326766 CACAAACAGGCGTGCGGG 62.327 66.667 6.26 0.00 0.00 6.13
744 855 2.606155 AAACACAAACAGGCGTGCGG 62.606 55.000 6.26 0.00 36.57 5.69
745 856 0.800300 AAAACACAAACAGGCGTGCG 60.800 50.000 6.26 0.00 36.57 5.34
746 857 0.644843 CAAAACACAAACAGGCGTGC 59.355 50.000 6.26 0.00 36.57 5.34
747 858 1.653114 CACAAAACACAAACAGGCGTG 59.347 47.619 4.53 4.53 39.10 5.34
748 859 1.271102 ACACAAAACACAAACAGGCGT 59.729 42.857 0.00 0.00 0.00 5.68
749 860 1.653114 CACACAAAACACAAACAGGCG 59.347 47.619 0.00 0.00 0.00 5.52
750 861 1.999024 CCACACAAAACACAAACAGGC 59.001 47.619 0.00 0.00 0.00 4.85
751 862 3.192422 TCTCCACACAAAACACAAACAGG 59.808 43.478 0.00 0.00 0.00 4.00
752 863 4.155826 TCTCTCCACACAAAACACAAACAG 59.844 41.667 0.00 0.00 0.00 3.16
753 864 4.075682 TCTCTCCACACAAAACACAAACA 58.924 39.130 0.00 0.00 0.00 2.83
754 865 4.695217 TCTCTCCACACAAAACACAAAC 57.305 40.909 0.00 0.00 0.00 2.93
755 866 5.417266 TGAATCTCTCCACACAAAACACAAA 59.583 36.000 0.00 0.00 0.00 2.83
756 867 4.946772 TGAATCTCTCCACACAAAACACAA 59.053 37.500 0.00 0.00 0.00 3.33
757 868 4.522114 TGAATCTCTCCACACAAAACACA 58.478 39.130 0.00 0.00 0.00 3.72
758 869 4.576463 ACTGAATCTCTCCACACAAAACAC 59.424 41.667 0.00 0.00 0.00 3.32
759 870 4.780815 ACTGAATCTCTCCACACAAAACA 58.219 39.130 0.00 0.00 0.00 2.83
760 871 4.084328 CGACTGAATCTCTCCACACAAAAC 60.084 45.833 0.00 0.00 0.00 2.43
761 872 4.058124 CGACTGAATCTCTCCACACAAAA 58.942 43.478 0.00 0.00 0.00 2.44
810 936 1.399440 CAGCAAGACACATCCAATCCG 59.601 52.381 0.00 0.00 0.00 4.18
941 1072 9.392021 GCAATTTCTTTTCTGAAACAAAAACAA 57.608 25.926 1.58 0.00 38.54 2.83
986 1216 4.012374 GGGATGCATTTTTCAGACTCTGA 58.988 43.478 4.50 4.50 38.87 3.27
1047 1280 2.043852 AGGCAGTCGATCCGGTCT 60.044 61.111 0.00 0.00 0.00 3.85
1965 2258 1.298157 CGCCCGAGACAAAAGCATCA 61.298 55.000 0.00 0.00 0.00 3.07
1971 2264 2.589442 AACGCGCCCGAGACAAAA 60.589 55.556 5.73 0.00 38.29 2.44
1998 2291 2.203224 TTGGCCGCGAACCTGAAA 60.203 55.556 8.23 0.00 0.00 2.69
2091 2384 2.433868 AGCACTGCAAAAGCAAGATG 57.566 45.000 3.30 0.00 0.00 2.90
2118 2416 1.264288 CCCGAGCAGAAAACAGTTGTC 59.736 52.381 0.00 0.00 0.00 3.18
2119 2417 1.308998 CCCGAGCAGAAAACAGTTGT 58.691 50.000 0.00 0.00 0.00 3.32
2174 2483 4.220602 TCTGTCAACTAGTAATGCAGCAGA 59.779 41.667 0.00 4.40 0.00 4.26
2213 2522 1.153025 TGCCCATGAGCTGATGAGC 60.153 57.895 15.36 13.96 46.64 4.26
2214 2523 0.468648 TCTGCCCATGAGCTGATGAG 59.531 55.000 15.36 1.87 36.00 2.90
2215 2524 0.468648 CTCTGCCCATGAGCTGATGA 59.531 55.000 15.36 0.00 39.58 2.92
2216 2525 0.180642 ACTCTGCCCATGAGCTGATG 59.819 55.000 9.17 6.14 39.58 3.07
2217 2526 0.180642 CACTCTGCCCATGAGCTGAT 59.819 55.000 9.17 0.00 39.58 2.90
2218 2527 1.600638 CACTCTGCCCATGAGCTGA 59.399 57.895 8.46 8.46 38.25 4.26
2219 2528 2.113433 GCACTCTGCCCATGAGCTG 61.113 63.158 0.00 0.00 37.42 4.24
2220 2529 2.271497 GCACTCTGCCCATGAGCT 59.729 61.111 0.00 0.00 37.42 4.09
2221 2530 2.113433 CAGCACTCTGCCCATGAGC 61.113 63.158 0.00 0.00 46.52 4.26
2222 2531 1.451567 CCAGCACTCTGCCCATGAG 60.452 63.158 0.00 0.00 46.52 2.90
2223 2532 2.672908 CCAGCACTCTGCCCATGA 59.327 61.111 0.00 0.00 46.52 3.07
2224 2533 3.138798 GCCAGCACTCTGCCCATG 61.139 66.667 0.00 0.00 46.52 3.66
2225 2534 4.790962 CGCCAGCACTCTGCCCAT 62.791 66.667 0.00 0.00 46.52 4.00
2228 2537 2.507110 TAAGACGCCAGCACTCTGCC 62.507 60.000 0.00 0.00 46.52 4.85
2229 2538 0.460987 ATAAGACGCCAGCACTCTGC 60.461 55.000 0.00 0.00 45.46 4.26
2230 2539 1.135915 AGATAAGACGCCAGCACTCTG 59.864 52.381 0.00 0.00 40.02 3.35
2231 2540 1.135915 CAGATAAGACGCCAGCACTCT 59.864 52.381 0.00 0.00 0.00 3.24
2232 2541 1.134965 ACAGATAAGACGCCAGCACTC 60.135 52.381 0.00 0.00 0.00 3.51
2233 2542 0.898320 ACAGATAAGACGCCAGCACT 59.102 50.000 0.00 0.00 0.00 4.40
2234 2543 1.002366 CACAGATAAGACGCCAGCAC 58.998 55.000 0.00 0.00 0.00 4.40
2235 2544 0.108186 CCACAGATAAGACGCCAGCA 60.108 55.000 0.00 0.00 0.00 4.41
2236 2545 1.432270 GCCACAGATAAGACGCCAGC 61.432 60.000 0.00 0.00 0.00 4.85
2237 2546 1.148157 CGCCACAGATAAGACGCCAG 61.148 60.000 0.00 0.00 0.00 4.85
2238 2547 1.153647 CGCCACAGATAAGACGCCA 60.154 57.895 0.00 0.00 0.00 5.69
2239 2548 0.739813 AACGCCACAGATAAGACGCC 60.740 55.000 0.00 0.00 0.00 5.68
2240 2549 1.076332 AAACGCCACAGATAAGACGC 58.924 50.000 0.00 0.00 0.00 5.19
2241 2550 1.393539 CCAAACGCCACAGATAAGACG 59.606 52.381 0.00 0.00 0.00 4.18
2242 2551 1.737793 CCCAAACGCCACAGATAAGAC 59.262 52.381 0.00 0.00 0.00 3.01
2253 2562 1.080569 CAGATTGCACCCAAACGCC 60.081 57.895 0.00 0.00 34.05 5.68
2272 2581 0.389025 TGTGCGAGCAAGAGTCAAGA 59.611 50.000 0.00 0.00 0.00 3.02
2273 2582 1.220529 TTGTGCGAGCAAGAGTCAAG 58.779 50.000 0.00 0.00 0.00 3.02
2274 2583 1.800586 GATTGTGCGAGCAAGAGTCAA 59.199 47.619 0.00 0.00 0.00 3.18
2275 2584 1.432514 GATTGTGCGAGCAAGAGTCA 58.567 50.000 0.00 0.00 0.00 3.41
2276 2585 0.723981 GGATTGTGCGAGCAAGAGTC 59.276 55.000 0.00 0.00 0.00 3.36
2277 2586 0.035317 TGGATTGTGCGAGCAAGAGT 59.965 50.000 0.00 0.00 0.00 3.24
2278 2587 0.445436 GTGGATTGTGCGAGCAAGAG 59.555 55.000 0.00 0.00 0.00 2.85
2385 2884 3.465871 GCCTGATTTCTTCCTAGAGCTG 58.534 50.000 0.00 0.00 0.00 4.24
2406 2905 2.905075 TGTGCAGTCGGAATCTATTGG 58.095 47.619 0.00 0.00 0.00 3.16
2409 2908 2.487934 GCATGTGCAGTCGGAATCTAT 58.512 47.619 0.00 0.00 41.59 1.98
2423 2922 1.366679 AGAGAGCGTCAATGCATGTG 58.633 50.000 0.00 0.98 37.31 3.21
2425 2924 1.520174 CGTAGAGAGCGTCAATGCATG 59.480 52.381 0.00 0.00 37.31 4.06
2459 2958 4.384247 CGTCAATAGCTGCAGTATAGAAGC 59.616 45.833 16.64 0.00 35.86 3.86
2460 2959 5.763088 TCGTCAATAGCTGCAGTATAGAAG 58.237 41.667 16.64 9.69 0.00 2.85
2461 2960 5.531287 TCTCGTCAATAGCTGCAGTATAGAA 59.469 40.000 16.64 0.00 0.00 2.10
2462 2961 5.063880 TCTCGTCAATAGCTGCAGTATAGA 58.936 41.667 16.64 8.19 0.00 1.98
2463 2962 5.363979 TCTCGTCAATAGCTGCAGTATAG 57.636 43.478 16.64 6.23 0.00 1.31
2464 2963 4.320567 GCTCTCGTCAATAGCTGCAGTATA 60.321 45.833 16.64 9.36 33.40 1.47
2465 2964 3.551863 GCTCTCGTCAATAGCTGCAGTAT 60.552 47.826 16.64 9.08 33.40 2.12
2466 2965 2.223595 GCTCTCGTCAATAGCTGCAGTA 60.224 50.000 16.64 7.02 33.40 2.74
2467 2966 1.470632 GCTCTCGTCAATAGCTGCAGT 60.471 52.381 16.64 4.79 33.40 4.40
2468 2967 1.207390 GCTCTCGTCAATAGCTGCAG 58.793 55.000 10.11 10.11 33.40 4.41
2469 2968 0.526310 CGCTCTCGTCAATAGCTGCA 60.526 55.000 1.02 0.00 34.03 4.41
2470 2969 1.211818 CCGCTCTCGTCAATAGCTGC 61.212 60.000 0.00 0.00 34.03 5.25
2471 2970 1.211818 GCCGCTCTCGTCAATAGCTG 61.212 60.000 0.00 0.00 34.03 4.24
2472 2971 1.066587 GCCGCTCTCGTCAATAGCT 59.933 57.895 0.00 0.00 34.03 3.32
2473 2972 2.296480 CGCCGCTCTCGTCAATAGC 61.296 63.158 0.00 0.00 0.00 2.97
2474 2973 0.248498 TTCGCCGCTCTCGTCAATAG 60.248 55.000 0.00 0.00 0.00 1.73
2475 2974 0.171679 TTTCGCCGCTCTCGTCAATA 59.828 50.000 0.00 0.00 0.00 1.90
2476 2975 1.078759 CTTTCGCCGCTCTCGTCAAT 61.079 55.000 0.00 0.00 0.00 2.57
2477 2976 1.733041 CTTTCGCCGCTCTCGTCAA 60.733 57.895 0.00 0.00 0.00 3.18
2478 2977 2.126463 CTTTCGCCGCTCTCGTCA 60.126 61.111 0.00 0.00 0.00 4.35
2479 2978 1.443872 TTCTTTCGCCGCTCTCGTC 60.444 57.895 0.00 0.00 0.00 4.20
2480 2979 1.733399 GTTCTTTCGCCGCTCTCGT 60.733 57.895 0.00 0.00 0.00 4.18
2487 2986 1.487231 CTCGTGTGTTCTTTCGCCG 59.513 57.895 0.00 0.00 0.00 6.46
2524 3023 0.242825 TCGTTCAGCCGTTGGTCTAG 59.757 55.000 0.00 0.00 0.00 2.43
2554 3053 6.955963 GCCTATACGATCGCATTTAATTCTTG 59.044 38.462 16.60 0.00 0.00 3.02
2605 3104 3.296854 TGGAGCCGTCACTCTACAATAT 58.703 45.455 0.00 0.00 36.87 1.28
2608 3107 1.476891 GATGGAGCCGTCACTCTACAA 59.523 52.381 3.88 0.00 36.87 2.41
2613 3112 0.741221 GTTGGATGGAGCCGTCACTC 60.741 60.000 10.67 0.00 33.86 3.51
2614 3113 1.296715 GTTGGATGGAGCCGTCACT 59.703 57.895 10.67 0.00 33.86 3.41
2633 3132 2.300597 TACCGTCATCGCGTCGTCAG 62.301 60.000 5.77 0.00 35.54 3.51
2672 3171 9.603298 GCAAATCATTATGTGATACATGTACTG 57.397 33.333 7.96 0.00 46.80 2.74
2721 3330 0.108424 GCTTCTCTGACTCATGCGGT 60.108 55.000 0.00 0.00 0.00 5.68
2727 3336 3.037431 GCTTTGAGCTTCTCTGACTCA 57.963 47.619 0.00 0.00 38.45 3.41
2761 3370 2.805353 CTGTTGCCTCCGTCGTCG 60.805 66.667 0.00 0.00 0.00 5.12
2762 3371 2.432628 CCTGTTGCCTCCGTCGTC 60.433 66.667 0.00 0.00 0.00 4.20
2763 3372 4.681978 GCCTGTTGCCTCCGTCGT 62.682 66.667 0.00 0.00 0.00 4.34
2776 3385 6.994496 TCATGAGAACTTAAATCCATAGCCTG 59.006 38.462 0.00 0.00 0.00 4.85
2789 3398 4.081697 TCAACCGCATCTCATGAGAACTTA 60.082 41.667 28.40 6.51 41.36 2.24
2800 3409 2.223923 ACAGAGCTATCAACCGCATCTC 60.224 50.000 0.00 0.00 0.00 2.75
2803 3412 2.555199 GAACAGAGCTATCAACCGCAT 58.445 47.619 0.00 0.00 0.00 4.73
2834 3443 3.236816 CGGTTGTCATTAGCAGCAAAAG 58.763 45.455 0.00 0.00 0.00 2.27
2875 3484 8.779303 TGCTCAAACGTAGAAAAAGATTATGAA 58.221 29.630 0.00 0.00 0.00 2.57
2888 3497 2.832129 AGGGAATCTGCTCAAACGTAGA 59.168 45.455 0.00 0.00 0.00 2.59
2909 3518 6.265876 GGTTCCCCAAAACTTATTGTCTTACA 59.734 38.462 0.00 0.00 0.00 2.41
2910 3519 6.265876 TGGTTCCCCAAAACTTATTGTCTTAC 59.734 38.462 0.00 0.00 37.98 2.34
2911 3520 6.374588 TGGTTCCCCAAAACTTATTGTCTTA 58.625 36.000 0.00 0.00 37.98 2.10
2912 3521 5.212745 TGGTTCCCCAAAACTTATTGTCTT 58.787 37.500 0.00 0.00 37.98 3.01
2913 3522 4.810345 TGGTTCCCCAAAACTTATTGTCT 58.190 39.130 0.00 0.00 37.98 3.41
2914 3523 4.560716 GCTGGTTCCCCAAAACTTATTGTC 60.561 45.833 0.00 0.00 41.27 3.18
2915 3524 3.323691 GCTGGTTCCCCAAAACTTATTGT 59.676 43.478 0.00 0.00 41.27 2.71
2916 3525 3.323403 TGCTGGTTCCCCAAAACTTATTG 59.677 43.478 0.00 0.00 41.27 1.90
2917 3526 3.323691 GTGCTGGTTCCCCAAAACTTATT 59.676 43.478 0.00 0.00 41.27 1.40
2918 3527 2.897326 GTGCTGGTTCCCCAAAACTTAT 59.103 45.455 0.00 0.00 41.27 1.73
2919 3528 2.312390 GTGCTGGTTCCCCAAAACTTA 58.688 47.619 0.00 0.00 41.27 2.24
2920 3529 1.119684 GTGCTGGTTCCCCAAAACTT 58.880 50.000 0.00 0.00 41.27 2.66
2921 3530 0.032615 TGTGCTGGTTCCCCAAAACT 60.033 50.000 0.00 0.00 41.27 2.66
2922 3531 0.827368 TTGTGCTGGTTCCCCAAAAC 59.173 50.000 0.00 0.00 41.27 2.43
2923 3532 0.827368 GTTGTGCTGGTTCCCCAAAA 59.173 50.000 0.00 0.00 41.27 2.44
2924 3533 1.045911 GGTTGTGCTGGTTCCCCAAA 61.046 55.000 0.00 0.00 41.27 3.28
2925 3534 1.456705 GGTTGTGCTGGTTCCCCAA 60.457 57.895 0.00 0.00 41.27 4.12
2926 3535 2.197324 GGTTGTGCTGGTTCCCCA 59.803 61.111 0.00 0.00 38.87 4.96
2927 3536 2.600470 GGGTTGTGCTGGTTCCCC 60.600 66.667 0.00 0.00 32.66 4.81
2928 3537 1.603739 GAGGGTTGTGCTGGTTCCC 60.604 63.158 0.00 0.00 38.50 3.97
2929 3538 0.690762 TAGAGGGTTGTGCTGGTTCC 59.309 55.000 0.00 0.00 0.00 3.62
2930 3539 1.339151 CCTAGAGGGTTGTGCTGGTTC 60.339 57.143 0.00 0.00 0.00 3.62
2931 3540 0.693049 CCTAGAGGGTTGTGCTGGTT 59.307 55.000 0.00 0.00 0.00 3.67
2932 3541 2.377136 CCTAGAGGGTTGTGCTGGT 58.623 57.895 0.00 0.00 0.00 4.00
2943 3552 2.252714 GAGATAAGCCACCCCTAGAGG 58.747 57.143 0.00 0.00 0.00 3.69
2944 3553 2.964209 TGAGATAAGCCACCCCTAGAG 58.036 52.381 0.00 0.00 0.00 2.43
2945 3554 3.637821 ATGAGATAAGCCACCCCTAGA 57.362 47.619 0.00 0.00 0.00 2.43
2946 3555 7.682787 ATATAATGAGATAAGCCACCCCTAG 57.317 40.000 0.00 0.00 0.00 3.02
2948 3557 9.744125 TTATATATAATGAGATAAGCCACCCCT 57.256 33.333 0.81 0.00 0.00 4.79
2971 3580 9.688091 TGGTACATATTGTAACACAACCATTAT 57.312 29.630 1.37 0.00 44.80 1.28
3005 3614 9.233649 GACTATGTATAGCTTCTGTACCTATGT 57.766 37.037 0.00 0.00 33.68 2.29
3006 3615 9.456147 AGACTATGTATAGCTTCTGTACCTATG 57.544 37.037 0.00 0.00 33.68 2.23
3009 3618 9.287373 GTTAGACTATGTATAGCTTCTGTACCT 57.713 37.037 0.00 0.00 33.68 3.08
3010 3619 9.064706 TGTTAGACTATGTATAGCTTCTGTACC 57.935 37.037 0.00 0.00 33.68 3.34
3011 3620 9.881529 GTGTTAGACTATGTATAGCTTCTGTAC 57.118 37.037 0.00 0.00 33.68 2.90
3012 3621 9.064706 GGTGTTAGACTATGTATAGCTTCTGTA 57.935 37.037 0.00 0.00 33.68 2.74
3013 3622 7.014422 GGGTGTTAGACTATGTATAGCTTCTGT 59.986 40.741 0.00 0.00 33.68 3.41
3014 3623 7.231722 AGGGTGTTAGACTATGTATAGCTTCTG 59.768 40.741 0.00 0.00 33.68 3.02
3015 3624 7.299134 AGGGTGTTAGACTATGTATAGCTTCT 58.701 38.462 0.00 0.00 33.68 2.85
3016 3625 7.230913 TGAGGGTGTTAGACTATGTATAGCTTC 59.769 40.741 0.00 0.00 33.68 3.86
3017 3626 7.067421 TGAGGGTGTTAGACTATGTATAGCTT 58.933 38.462 0.00 0.00 33.68 3.74
3018 3627 6.611785 TGAGGGTGTTAGACTATGTATAGCT 58.388 40.000 0.00 0.00 33.68 3.32
3019 3628 6.896021 TGAGGGTGTTAGACTATGTATAGC 57.104 41.667 0.00 0.00 33.68 2.97
3020 3629 9.303116 AGATTGAGGGTGTTAGACTATGTATAG 57.697 37.037 0.00 0.00 36.46 1.31
3021 3630 9.656323 AAGATTGAGGGTGTTAGACTATGTATA 57.344 33.333 0.00 0.00 0.00 1.47
3022 3631 8.554490 AAGATTGAGGGTGTTAGACTATGTAT 57.446 34.615 0.00 0.00 0.00 2.29
3023 3632 7.973048 AAGATTGAGGGTGTTAGACTATGTA 57.027 36.000 0.00 0.00 0.00 2.29
3024 3633 6.875972 AAGATTGAGGGTGTTAGACTATGT 57.124 37.500 0.00 0.00 0.00 2.29
3025 3634 6.926272 GCTAAGATTGAGGGTGTTAGACTATG 59.074 42.308 0.00 0.00 0.00 2.23
3026 3635 6.042208 GGCTAAGATTGAGGGTGTTAGACTAT 59.958 42.308 0.00 0.00 30.13 2.12
3027 3636 5.363005 GGCTAAGATTGAGGGTGTTAGACTA 59.637 44.000 0.00 0.00 30.13 2.59
3028 3637 4.162509 GGCTAAGATTGAGGGTGTTAGACT 59.837 45.833 0.00 0.00 30.13 3.24
3029 3638 4.081087 TGGCTAAGATTGAGGGTGTTAGAC 60.081 45.833 0.00 0.00 32.60 2.59
3030 3639 4.081087 GTGGCTAAGATTGAGGGTGTTAGA 60.081 45.833 0.00 0.00 0.00 2.10
3031 3640 4.080863 AGTGGCTAAGATTGAGGGTGTTAG 60.081 45.833 0.00 0.00 0.00 2.34
3032 3641 3.844211 AGTGGCTAAGATTGAGGGTGTTA 59.156 43.478 0.00 0.00 0.00 2.41
3033 3642 2.644798 AGTGGCTAAGATTGAGGGTGTT 59.355 45.455 0.00 0.00 0.00 3.32
3034 3643 2.269940 AGTGGCTAAGATTGAGGGTGT 58.730 47.619 0.00 0.00 0.00 4.16
3035 3644 3.356529 AAGTGGCTAAGATTGAGGGTG 57.643 47.619 0.00 0.00 0.00 4.61
3036 3645 3.589288 AGAAAGTGGCTAAGATTGAGGGT 59.411 43.478 0.00 0.00 0.00 4.34
3037 3646 4.227864 AGAAAGTGGCTAAGATTGAGGG 57.772 45.455 0.00 0.00 0.00 4.30
3038 3647 7.106239 TCTTTAGAAAGTGGCTAAGATTGAGG 58.894 38.462 2.10 0.00 37.31 3.86
3039 3648 8.553459 TTCTTTAGAAAGTGGCTAAGATTGAG 57.447 34.615 2.10 0.00 37.31 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.