Multiple sequence alignment - TraesCS3B01G365300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G365300 chr3B 100.000 2459 0 0 1 2459 577489273 577491731 0.000000e+00 4542
1 TraesCS3B01G365300 chr3A 88.751 2098 122 48 408 2439 580608040 580610089 0.000000e+00 2462
2 TraesCS3B01G365300 chr1D 86.131 137 15 3 1084 1220 404655712 404655844 7.090000e-31 145
3 TraesCS3B01G365300 chr1A 85.821 134 19 0 1087 1220 500285877 500286010 2.550000e-30 143
4 TraesCS3B01G365300 chr1B 86.957 115 15 0 1106 1220 544492064 544492178 1.980000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G365300 chr3B 577489273 577491731 2458 False 4542 4542 100.000 1 2459 1 chr3B.!!$F1 2458
1 TraesCS3B01G365300 chr3A 580608040 580610089 2049 False 2462 2462 88.751 408 2439 1 chr3A.!!$F1 2031

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 825 0.034089 CCCAACTCCCATCAAGGACC 60.034 60.0 0.0 0.0 41.22 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2019 0.038526 GTCTCGCGAGGGTTTCAGAA 60.039 55.0 33.98 10.31 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.845740 AAATTATAAAAAGCAACCACCTTTTCT 57.154 25.926 0.00 0.00 40.53 2.52
38 39 9.845740 AATTATAAAAAGCAACCACCTTTTCTT 57.154 25.926 0.00 0.00 40.53 2.52
39 40 8.655651 TTATAAAAAGCAACCACCTTTTCTTG 57.344 30.769 0.00 0.00 40.53 3.02
40 41 4.551702 AAAAGCAACCACCTTTTCTTGT 57.448 36.364 0.00 0.00 37.86 3.16
41 42 4.551702 AAAGCAACCACCTTTTCTTGTT 57.448 36.364 0.00 0.00 0.00 2.83
42 43 3.801114 AGCAACCACCTTTTCTTGTTC 57.199 42.857 0.00 0.00 0.00 3.18
43 44 3.365472 AGCAACCACCTTTTCTTGTTCT 58.635 40.909 0.00 0.00 0.00 3.01
44 45 3.769300 AGCAACCACCTTTTCTTGTTCTT 59.231 39.130 0.00 0.00 0.00 2.52
45 46 4.222810 AGCAACCACCTTTTCTTGTTCTTT 59.777 37.500 0.00 0.00 0.00 2.52
46 47 4.329801 GCAACCACCTTTTCTTGTTCTTTG 59.670 41.667 0.00 0.00 0.00 2.77
47 48 5.478407 CAACCACCTTTTCTTGTTCTTTGT 58.522 37.500 0.00 0.00 0.00 2.83
48 49 6.626302 CAACCACCTTTTCTTGTTCTTTGTA 58.374 36.000 0.00 0.00 0.00 2.41
49 50 6.844097 ACCACCTTTTCTTGTTCTTTGTAA 57.156 33.333 0.00 0.00 0.00 2.41
50 51 7.418337 ACCACCTTTTCTTGTTCTTTGTAAT 57.582 32.000 0.00 0.00 0.00 1.89
51 52 7.264947 ACCACCTTTTCTTGTTCTTTGTAATG 58.735 34.615 0.00 0.00 0.00 1.90
52 53 7.123547 ACCACCTTTTCTTGTTCTTTGTAATGA 59.876 33.333 0.00 0.00 0.00 2.57
53 54 8.143835 CCACCTTTTCTTGTTCTTTGTAATGAT 58.856 33.333 0.00 0.00 0.00 2.45
54 55 9.533253 CACCTTTTCTTGTTCTTTGTAATGATT 57.467 29.630 0.00 0.00 0.00 2.57
85 86 6.502195 GCAACTAGCTTTTCTTGTTCTTTG 57.498 37.500 0.00 0.00 38.40 2.77
86 87 6.036470 GCAACTAGCTTTTCTTGTTCTTTGT 58.964 36.000 0.00 0.00 38.40 2.83
87 88 7.193595 GCAACTAGCTTTTCTTGTTCTTTGTA 58.806 34.615 0.00 0.00 38.40 2.41
88 89 7.377131 GCAACTAGCTTTTCTTGTTCTTTGTAG 59.623 37.037 0.00 0.00 38.40 2.74
89 90 8.398665 CAACTAGCTTTTCTTGTTCTTTGTAGT 58.601 33.333 0.00 0.00 38.40 2.73
90 91 8.507524 ACTAGCTTTTCTTGTTCTTTGTAGTT 57.492 30.769 0.00 0.00 0.00 2.24
91 92 8.398665 ACTAGCTTTTCTTGTTCTTTGTAGTTG 58.601 33.333 0.00 0.00 0.00 3.16
92 93 7.391148 AGCTTTTCTTGTTCTTTGTAGTTGA 57.609 32.000 0.00 0.00 0.00 3.18
93 94 7.826690 AGCTTTTCTTGTTCTTTGTAGTTGAA 58.173 30.769 0.00 0.00 0.00 2.69
94 95 8.303876 AGCTTTTCTTGTTCTTTGTAGTTGAAA 58.696 29.630 0.00 0.00 0.00 2.69
95 96 8.921670 GCTTTTCTTGTTCTTTGTAGTTGAAAA 58.078 29.630 0.00 0.00 32.44 2.29
117 118 0.817654 GGCAACTTGCTGGTATTCCC 59.182 55.000 13.43 0.00 44.28 3.97
118 119 1.616994 GGCAACTTGCTGGTATTCCCT 60.617 52.381 13.43 0.00 44.28 4.20
119 120 2.356741 GGCAACTTGCTGGTATTCCCTA 60.357 50.000 13.43 0.00 44.28 3.53
120 121 2.683362 GCAACTTGCTGGTATTCCCTAC 59.317 50.000 6.50 0.00 40.96 3.18
121 122 3.872240 GCAACTTGCTGGTATTCCCTACA 60.872 47.826 6.50 0.00 40.96 2.74
122 123 4.526970 CAACTTGCTGGTATTCCCTACAT 58.473 43.478 0.00 0.00 31.44 2.29
123 124 4.862641 ACTTGCTGGTATTCCCTACATT 57.137 40.909 0.00 0.00 31.44 2.71
124 125 4.526970 ACTTGCTGGTATTCCCTACATTG 58.473 43.478 0.00 0.00 31.44 2.82
125 126 2.930950 TGCTGGTATTCCCTACATTGC 58.069 47.619 0.00 0.00 31.44 3.56
126 127 2.240921 TGCTGGTATTCCCTACATTGCA 59.759 45.455 0.00 0.00 32.70 4.08
127 128 3.287222 GCTGGTATTCCCTACATTGCAA 58.713 45.455 0.00 0.00 31.44 4.08
128 129 3.699038 GCTGGTATTCCCTACATTGCAAA 59.301 43.478 1.71 0.00 31.44 3.68
129 130 4.159506 GCTGGTATTCCCTACATTGCAAAA 59.840 41.667 1.71 0.00 31.44 2.44
130 131 5.163416 GCTGGTATTCCCTACATTGCAAAAT 60.163 40.000 1.71 0.00 31.44 1.82
131 132 6.219417 TGGTATTCCCTACATTGCAAAATG 57.781 37.500 1.71 0.00 36.29 2.32
132 133 5.719085 TGGTATTCCCTACATTGCAAAATGT 59.281 36.000 1.71 7.12 44.75 2.71
133 134 6.042143 GGTATTCCCTACATTGCAAAATGTG 58.958 40.000 14.53 6.12 42.79 3.21
134 135 5.999205 ATTCCCTACATTGCAAAATGTGA 57.001 34.783 14.53 2.55 42.79 3.58
135 136 4.782019 TCCCTACATTGCAAAATGTGAC 57.218 40.909 14.53 0.00 42.79 3.67
136 137 4.148079 TCCCTACATTGCAAAATGTGACA 58.852 39.130 14.53 0.00 42.79 3.58
137 138 4.771577 TCCCTACATTGCAAAATGTGACAT 59.228 37.500 14.53 0.00 42.79 3.06
138 139 4.865925 CCCTACATTGCAAAATGTGACATG 59.134 41.667 14.53 3.00 42.79 3.21
139 140 4.865925 CCTACATTGCAAAATGTGACATGG 59.134 41.667 14.53 6.37 42.79 3.66
140 141 4.339872 ACATTGCAAAATGTGACATGGT 57.660 36.364 1.71 0.00 41.46 3.55
141 142 4.706035 ACATTGCAAAATGTGACATGGTT 58.294 34.783 1.71 0.00 41.46 3.67
142 143 5.124645 ACATTGCAAAATGTGACATGGTTT 58.875 33.333 1.71 0.00 41.46 3.27
143 144 5.007823 ACATTGCAAAATGTGACATGGTTTG 59.992 36.000 15.04 15.04 41.46 2.93
144 145 3.464907 TGCAAAATGTGACATGGTTTGG 58.535 40.909 18.87 3.29 31.36 3.28
145 146 2.223845 GCAAAATGTGACATGGTTTGGC 59.776 45.455 18.87 8.71 31.36 4.52
146 147 3.731089 CAAAATGTGACATGGTTTGGCT 58.269 40.909 12.61 0.00 32.91 4.75
147 148 3.389925 AAATGTGACATGGTTTGGCTG 57.610 42.857 0.00 0.00 32.91 4.85
148 149 1.999648 ATGTGACATGGTTTGGCTGT 58.000 45.000 0.00 0.00 32.91 4.40
149 150 1.317613 TGTGACATGGTTTGGCTGTC 58.682 50.000 0.00 0.00 39.74 3.51
150 151 0.598065 GTGACATGGTTTGGCTGTCC 59.402 55.000 0.00 0.00 38.79 4.02
151 152 0.184692 TGACATGGTTTGGCTGTCCA 59.815 50.000 0.00 0.00 38.79 4.02
163 164 5.606348 TTGGCTGTCCAATTTTGTACTTT 57.394 34.783 0.00 0.00 46.89 2.66
164 165 4.942852 TGGCTGTCCAATTTTGTACTTTG 58.057 39.130 0.00 0.00 39.99 2.77
165 166 4.202202 TGGCTGTCCAATTTTGTACTTTGG 60.202 41.667 9.69 9.69 39.99 3.28
166 167 3.740832 GCTGTCCAATTTTGTACTTTGGC 59.259 43.478 10.63 7.91 39.79 4.52
167 168 4.306600 CTGTCCAATTTTGTACTTTGGCC 58.693 43.478 0.00 0.00 39.79 5.36
168 169 3.706594 TGTCCAATTTTGTACTTTGGCCA 59.293 39.130 0.00 0.00 39.79 5.36
169 170 4.346418 TGTCCAATTTTGTACTTTGGCCAT 59.654 37.500 6.09 0.00 39.79 4.40
170 171 4.690280 GTCCAATTTTGTACTTTGGCCATG 59.310 41.667 6.09 5.34 39.79 3.66
171 172 4.590647 TCCAATTTTGTACTTTGGCCATGA 59.409 37.500 6.09 0.00 39.79 3.07
172 173 5.070981 TCCAATTTTGTACTTTGGCCATGAA 59.929 36.000 6.09 0.00 39.79 2.57
173 174 5.762218 CCAATTTTGTACTTTGGCCATGAAA 59.238 36.000 6.09 0.00 34.03 2.69
174 175 6.430616 CCAATTTTGTACTTTGGCCATGAAAT 59.569 34.615 6.09 3.17 34.03 2.17
175 176 7.040548 CCAATTTTGTACTTTGGCCATGAAATT 60.041 33.333 6.09 8.93 34.03 1.82
176 177 8.351461 CAATTTTGTACTTTGGCCATGAAATTT 58.649 29.630 6.09 0.00 0.00 1.82
177 178 6.857777 TTTGTACTTTGGCCATGAAATTTG 57.142 33.333 6.09 0.00 0.00 2.32
178 179 4.314121 TGTACTTTGGCCATGAAATTTGC 58.686 39.130 6.09 0.00 0.00 3.68
179 180 2.415776 ACTTTGGCCATGAAATTTGCG 58.584 42.857 6.09 0.00 0.00 4.85
180 181 1.129064 CTTTGGCCATGAAATTTGCGC 59.871 47.619 6.09 0.00 0.00 6.09
181 182 0.034476 TTGGCCATGAAATTTGCGCA 59.966 45.000 6.09 5.66 0.00 6.09
182 183 0.669932 TGGCCATGAAATTTGCGCAC 60.670 50.000 11.12 0.00 0.00 5.34
183 184 0.669932 GGCCATGAAATTTGCGCACA 60.670 50.000 11.12 3.02 0.00 4.57
184 185 1.361793 GCCATGAAATTTGCGCACAT 58.638 45.000 11.12 6.34 0.00 3.21
185 186 1.733360 GCCATGAAATTTGCGCACATT 59.267 42.857 15.79 15.79 0.00 2.71
186 187 2.928757 GCCATGAAATTTGCGCACATTA 59.071 40.909 21.17 8.11 0.00 1.90
187 188 3.242059 GCCATGAAATTTGCGCACATTAC 60.242 43.478 21.17 8.89 0.00 1.89
188 189 4.175516 CCATGAAATTTGCGCACATTACT 58.824 39.130 21.17 7.65 0.00 2.24
189 190 4.626604 CCATGAAATTTGCGCACATTACTT 59.373 37.500 21.17 6.92 0.00 2.24
190 191 5.120519 CCATGAAATTTGCGCACATTACTTT 59.879 36.000 21.17 8.39 0.00 2.66
191 192 5.573296 TGAAATTTGCGCACATTACTTTG 57.427 34.783 21.17 0.00 0.00 2.77
192 193 5.046529 TGAAATTTGCGCACATTACTTTGT 58.953 33.333 21.17 5.45 0.00 2.83
193 194 5.521735 TGAAATTTGCGCACATTACTTTGTT 59.478 32.000 21.17 4.73 0.00 2.83
194 195 4.970472 ATTTGCGCACATTACTTTGTTG 57.030 36.364 11.12 0.00 0.00 3.33
195 196 1.764851 TGCGCACATTACTTTGTTGC 58.235 45.000 5.66 0.00 0.00 4.17
196 197 1.059942 GCGCACATTACTTTGTTGCC 58.940 50.000 0.30 0.00 0.00 4.52
197 198 1.696988 CGCACATTACTTTGTTGCCC 58.303 50.000 0.00 0.00 0.00 5.36
198 199 1.000827 CGCACATTACTTTGTTGCCCA 60.001 47.619 0.00 0.00 0.00 5.36
199 200 2.676076 GCACATTACTTTGTTGCCCAG 58.324 47.619 0.00 0.00 0.00 4.45
200 201 2.035832 GCACATTACTTTGTTGCCCAGT 59.964 45.455 0.00 0.00 0.00 4.00
201 202 3.492482 GCACATTACTTTGTTGCCCAGTT 60.492 43.478 0.00 0.00 0.00 3.16
202 203 4.692228 CACATTACTTTGTTGCCCAGTTT 58.308 39.130 0.00 0.00 0.00 2.66
203 204 5.115480 CACATTACTTTGTTGCCCAGTTTT 58.885 37.500 0.00 0.00 0.00 2.43
204 205 6.276847 CACATTACTTTGTTGCCCAGTTTTA 58.723 36.000 0.00 0.00 0.00 1.52
205 206 6.758886 CACATTACTTTGTTGCCCAGTTTTAA 59.241 34.615 0.00 0.00 0.00 1.52
206 207 7.278868 CACATTACTTTGTTGCCCAGTTTTAAA 59.721 33.333 0.00 0.00 0.00 1.52
207 208 7.824779 ACATTACTTTGTTGCCCAGTTTTAAAA 59.175 29.630 0.00 0.00 0.00 1.52
208 209 8.669243 CATTACTTTGTTGCCCAGTTTTAAAAA 58.331 29.630 1.31 0.00 0.00 1.94
209 210 6.735678 ACTTTGTTGCCCAGTTTTAAAAAG 57.264 33.333 1.31 0.00 0.00 2.27
210 211 5.123186 ACTTTGTTGCCCAGTTTTAAAAAGC 59.877 36.000 1.31 4.62 0.00 3.51
211 212 3.536570 TGTTGCCCAGTTTTAAAAAGCC 58.463 40.909 1.31 0.00 0.00 4.35
212 213 3.055094 TGTTGCCCAGTTTTAAAAAGCCA 60.055 39.130 1.31 0.00 0.00 4.75
213 214 3.467374 TGCCCAGTTTTAAAAAGCCAG 57.533 42.857 1.31 0.00 0.00 4.85
214 215 3.034635 TGCCCAGTTTTAAAAAGCCAGA 58.965 40.909 1.31 0.00 0.00 3.86
215 216 3.452627 TGCCCAGTTTTAAAAAGCCAGAA 59.547 39.130 1.31 0.00 0.00 3.02
216 217 4.102367 TGCCCAGTTTTAAAAAGCCAGAAT 59.898 37.500 1.31 0.00 0.00 2.40
217 218 4.690748 GCCCAGTTTTAAAAAGCCAGAATC 59.309 41.667 1.31 0.00 0.00 2.52
218 219 5.741673 GCCCAGTTTTAAAAAGCCAGAATCA 60.742 40.000 1.31 0.00 0.00 2.57
219 220 5.696270 CCCAGTTTTAAAAAGCCAGAATCAC 59.304 40.000 1.31 0.00 0.00 3.06
220 221 6.279882 CCAGTTTTAAAAAGCCAGAATCACA 58.720 36.000 1.31 0.00 0.00 3.58
221 222 6.760770 CCAGTTTTAAAAAGCCAGAATCACAA 59.239 34.615 1.31 0.00 0.00 3.33
222 223 7.042523 CCAGTTTTAAAAAGCCAGAATCACAAG 60.043 37.037 1.31 0.00 0.00 3.16
223 224 7.706179 CAGTTTTAAAAAGCCAGAATCACAAGA 59.294 33.333 1.31 0.00 0.00 3.02
224 225 8.257306 AGTTTTAAAAAGCCAGAATCACAAGAA 58.743 29.630 1.31 0.00 0.00 2.52
225 226 8.878769 GTTTTAAAAAGCCAGAATCACAAGAAA 58.121 29.630 1.31 0.00 0.00 2.52
226 227 8.647143 TTTAAAAAGCCAGAATCACAAGAAAG 57.353 30.769 0.00 0.00 0.00 2.62
227 228 5.859205 AAAAGCCAGAATCACAAGAAAGT 57.141 34.783 0.00 0.00 0.00 2.66
228 229 4.843220 AAGCCAGAATCACAAGAAAGTG 57.157 40.909 0.00 0.00 40.85 3.16
242 243 9.897744 TCACAAGAAAGTGATTTTGACATAATC 57.102 29.630 10.65 10.65 43.18 1.75
243 244 9.681692 CACAAGAAAGTGATTTTGACATAATCA 57.318 29.630 14.92 14.92 42.05 2.57
259 260 9.850198 TGACATAATCAAATGATATCAAGTCCA 57.150 29.630 9.99 0.00 33.02 4.02
272 273 9.890629 TGATATCAAGTCCATATAATACAAGCC 57.109 33.333 1.98 0.00 0.00 4.35
273 274 9.890629 GATATCAAGTCCATATAATACAAGCCA 57.109 33.333 0.00 0.00 0.00 4.75
274 275 7.986085 ATCAAGTCCATATAATACAAGCCAC 57.014 36.000 0.00 0.00 0.00 5.01
275 276 5.989168 TCAAGTCCATATAATACAAGCCACG 59.011 40.000 0.00 0.00 0.00 4.94
276 277 4.894784 AGTCCATATAATACAAGCCACGG 58.105 43.478 0.00 0.00 0.00 4.94
277 278 4.000988 GTCCATATAATACAAGCCACGGG 58.999 47.826 0.00 0.00 0.00 5.28
278 279 3.649023 TCCATATAATACAAGCCACGGGT 59.351 43.478 0.00 0.00 0.00 5.28
279 280 4.000988 CCATATAATACAAGCCACGGGTC 58.999 47.826 0.00 0.00 0.00 4.46
280 281 4.262894 CCATATAATACAAGCCACGGGTCT 60.263 45.833 0.00 0.00 0.00 3.85
281 282 5.046878 CCATATAATACAAGCCACGGGTCTA 60.047 44.000 0.00 0.00 0.00 2.59
282 283 2.981859 AATACAAGCCACGGGTCTAG 57.018 50.000 0.00 0.00 0.00 2.43
283 284 1.861982 ATACAAGCCACGGGTCTAGT 58.138 50.000 0.00 0.00 0.00 2.57
284 285 2.512692 TACAAGCCACGGGTCTAGTA 57.487 50.000 0.00 0.00 0.00 1.82
285 286 1.183549 ACAAGCCACGGGTCTAGTAG 58.816 55.000 0.00 0.00 0.00 2.57
286 287 1.183549 CAAGCCACGGGTCTAGTAGT 58.816 55.000 0.00 0.00 0.00 2.73
287 288 1.549170 CAAGCCACGGGTCTAGTAGTT 59.451 52.381 0.00 0.00 0.00 2.24
288 289 1.934410 AGCCACGGGTCTAGTAGTTT 58.066 50.000 0.00 0.00 0.00 2.66
289 290 1.549170 AGCCACGGGTCTAGTAGTTTG 59.451 52.381 0.00 0.00 0.00 2.93
290 291 1.405121 GCCACGGGTCTAGTAGTTTGG 60.405 57.143 0.00 0.00 0.00 3.28
291 292 1.897802 CCACGGGTCTAGTAGTTTGGT 59.102 52.381 0.00 0.00 0.00 3.67
292 293 3.091545 CCACGGGTCTAGTAGTTTGGTA 58.908 50.000 0.00 0.00 0.00 3.25
293 294 3.129988 CCACGGGTCTAGTAGTTTGGTAG 59.870 52.174 0.00 0.00 0.00 3.18
294 295 2.757314 ACGGGTCTAGTAGTTTGGTAGC 59.243 50.000 0.00 0.00 0.00 3.58
295 296 2.223433 CGGGTCTAGTAGTTTGGTAGCG 60.223 54.545 0.00 0.00 0.00 4.26
296 297 2.757314 GGGTCTAGTAGTTTGGTAGCGT 59.243 50.000 0.00 0.00 0.00 5.07
297 298 3.428589 GGGTCTAGTAGTTTGGTAGCGTG 60.429 52.174 0.00 0.00 0.00 5.34
298 299 3.192212 GGTCTAGTAGTTTGGTAGCGTGT 59.808 47.826 0.00 0.00 0.00 4.49
299 300 4.164294 GTCTAGTAGTTTGGTAGCGTGTG 58.836 47.826 0.00 0.00 0.00 3.82
300 301 1.792006 AGTAGTTTGGTAGCGTGTGC 58.208 50.000 0.00 0.00 43.24 4.57
313 314 2.381589 GCGTGTGCTTGTAAAAAGACC 58.618 47.619 0.00 0.00 38.39 3.85
314 315 2.032924 GCGTGTGCTTGTAAAAAGACCT 59.967 45.455 0.00 0.00 38.39 3.85
315 316 3.488553 GCGTGTGCTTGTAAAAAGACCTT 60.489 43.478 0.00 0.00 38.39 3.50
316 317 4.035017 CGTGTGCTTGTAAAAAGACCTTG 58.965 43.478 0.00 0.00 0.00 3.61
317 318 4.201871 CGTGTGCTTGTAAAAAGACCTTGA 60.202 41.667 0.00 0.00 0.00 3.02
318 319 5.505654 CGTGTGCTTGTAAAAAGACCTTGAT 60.506 40.000 0.00 0.00 0.00 2.57
319 320 6.273071 GTGTGCTTGTAAAAAGACCTTGATT 58.727 36.000 0.00 0.00 0.00 2.57
320 321 6.756542 GTGTGCTTGTAAAAAGACCTTGATTT 59.243 34.615 0.00 0.00 0.00 2.17
321 322 7.918562 GTGTGCTTGTAAAAAGACCTTGATTTA 59.081 33.333 0.00 0.00 0.00 1.40
322 323 8.637986 TGTGCTTGTAAAAAGACCTTGATTTAT 58.362 29.630 0.00 0.00 0.00 1.40
323 324 9.476202 GTGCTTGTAAAAAGACCTTGATTTATT 57.524 29.630 0.00 0.00 0.00 1.40
345 346 9.730705 TTATTTAAATGATATCAGAGAGGGCAG 57.269 33.333 11.78 0.00 0.00 4.85
346 347 3.699411 AATGATATCAGAGAGGGCAGC 57.301 47.619 11.78 0.00 0.00 5.25
347 348 1.346062 TGATATCAGAGAGGGCAGCC 58.654 55.000 1.26 1.26 0.00 4.85
348 349 1.132913 TGATATCAGAGAGGGCAGCCT 60.133 52.381 12.43 0.00 0.00 4.58
349 350 1.550072 GATATCAGAGAGGGCAGCCTC 59.450 57.143 12.43 7.09 37.11 4.70
354 355 4.577320 AGAGGGCAGCCTCTCTTT 57.423 55.556 21.03 6.33 42.83 2.52
355 356 2.784371 AGAGGGCAGCCTCTCTTTT 58.216 52.632 21.03 5.75 42.83 2.27
356 357 0.327591 AGAGGGCAGCCTCTCTTTTG 59.672 55.000 21.03 0.00 42.83 2.44
357 358 1.303970 AGGGCAGCCTCTCTTTTGC 60.304 57.895 12.43 0.00 35.87 3.68
358 359 1.303970 GGGCAGCCTCTCTTTTGCT 60.304 57.895 12.43 0.00 36.79 3.91
359 360 1.311651 GGGCAGCCTCTCTTTTGCTC 61.312 60.000 12.43 0.00 36.79 4.26
360 361 0.607489 GGCAGCCTCTCTTTTGCTCA 60.607 55.000 3.29 0.00 36.79 4.26
361 362 1.242076 GCAGCCTCTCTTTTGCTCAA 58.758 50.000 0.00 0.00 31.77 3.02
362 363 1.610522 GCAGCCTCTCTTTTGCTCAAA 59.389 47.619 0.00 0.00 31.77 2.69
363 364 2.035066 GCAGCCTCTCTTTTGCTCAAAA 59.965 45.455 7.46 7.46 37.90 2.44
364 365 3.305881 GCAGCCTCTCTTTTGCTCAAAAT 60.306 43.478 8.07 0.00 39.29 1.82
365 366 4.082571 GCAGCCTCTCTTTTGCTCAAAATA 60.083 41.667 8.07 1.50 39.29 1.40
366 367 5.393896 GCAGCCTCTCTTTTGCTCAAAATAT 60.394 40.000 8.07 0.00 39.29 1.28
367 368 6.183360 GCAGCCTCTCTTTTGCTCAAAATATA 60.183 38.462 8.07 0.00 39.29 0.86
368 369 7.469732 GCAGCCTCTCTTTTGCTCAAAATATAT 60.470 37.037 8.07 0.00 39.29 0.86
369 370 9.060347 CAGCCTCTCTTTTGCTCAAAATATATA 57.940 33.333 8.07 0.00 39.29 0.86
370 371 9.804977 AGCCTCTCTTTTGCTCAAAATATATAT 57.195 29.630 8.07 0.00 39.29 0.86
393 394 9.959693 ATATACTCTCCCTAATATAAGGCACAT 57.040 33.333 0.00 0.00 35.09 3.21
395 396 9.959693 ATACTCTCCCTAATATAAGGCACATAT 57.040 33.333 0.00 0.00 35.09 1.78
396 397 8.312669 ACTCTCCCTAATATAAGGCACATATC 57.687 38.462 0.00 0.00 35.09 1.63
397 398 7.068839 ACTCTCCCTAATATAAGGCACATATCG 59.931 40.741 0.00 0.00 35.09 2.92
398 399 6.895756 TCTCCCTAATATAAGGCACATATCGT 59.104 38.462 0.00 0.00 35.09 3.73
399 400 7.399191 TCTCCCTAATATAAGGCACATATCGTT 59.601 37.037 0.00 0.00 35.09 3.85
400 401 7.553334 TCCCTAATATAAGGCACATATCGTTC 58.447 38.462 0.00 0.00 35.09 3.95
401 402 7.179516 TCCCTAATATAAGGCACATATCGTTCA 59.820 37.037 0.00 0.00 35.09 3.18
402 403 7.822334 CCCTAATATAAGGCACATATCGTTCAA 59.178 37.037 0.00 0.00 35.09 2.69
403 404 8.656849 CCTAATATAAGGCACATATCGTTCAAC 58.343 37.037 0.00 0.00 0.00 3.18
404 405 9.424319 CTAATATAAGGCACATATCGTTCAACT 57.576 33.333 0.00 0.00 0.00 3.16
406 407 9.772973 AATATAAGGCACATATCGTTCAACTAA 57.227 29.630 0.00 0.00 0.00 2.24
416 417 7.825270 ACATATCGTTCAACTAATTGTGGGTTA 59.175 33.333 0.00 0.00 37.11 2.85
418 419 6.939132 TCGTTCAACTAATTGTGGGTTAAA 57.061 33.333 0.00 0.00 37.11 1.52
419 420 6.727215 TCGTTCAACTAATTGTGGGTTAAAC 58.273 36.000 0.00 0.00 37.11 2.01
426 427 7.604657 ACTAATTGTGGGTTAAACCATGAAA 57.395 32.000 17.02 11.30 43.59 2.69
428 429 8.655901 ACTAATTGTGGGTTAAACCATGAAATT 58.344 29.630 23.33 23.33 43.59 1.82
429 430 9.500785 CTAATTGTGGGTTAAACCATGAAATTT 57.499 29.630 24.26 13.30 43.59 1.82
430 431 7.742556 ATTGTGGGTTAAACCATGAAATTTG 57.257 32.000 17.02 0.00 43.59 2.32
431 432 6.485830 TGTGGGTTAAACCATGAAATTTGA 57.514 33.333 17.02 0.00 43.59 2.69
432 433 6.520272 TGTGGGTTAAACCATGAAATTTGAG 58.480 36.000 17.02 0.00 43.59 3.02
435 436 7.713073 GTGGGTTAAACCATGAAATTTGAGAAA 59.287 33.333 17.02 0.00 43.59 2.52
438 439 9.103861 GGTTAAACCATGAAATTTGAGAAAACA 57.896 29.630 0.00 0.00 38.42 2.83
439 440 9.914923 GTTAAACCATGAAATTTGAGAAAACAC 57.085 29.630 0.00 0.00 0.00 3.32
440 441 9.658799 TTAAACCATGAAATTTGAGAAAACACA 57.341 25.926 0.00 0.00 0.00 3.72
442 443 8.735692 AACCATGAAATTTGAGAAAACACAAT 57.264 26.923 0.00 0.00 0.00 2.71
443 444 9.829507 AACCATGAAATTTGAGAAAACACAATA 57.170 25.926 0.00 0.00 0.00 1.90
444 445 9.260002 ACCATGAAATTTGAGAAAACACAATAC 57.740 29.630 0.00 0.00 0.00 1.89
453 454 5.121611 TGAGAAAACACAATACGGCATACAG 59.878 40.000 0.00 0.00 0.00 2.74
458 459 7.618502 AAACACAATACGGCATACAGATTTA 57.381 32.000 0.00 0.00 0.00 1.40
460 461 7.011828 ACACAATACGGCATACAGATTTAAC 57.988 36.000 0.00 0.00 0.00 2.01
462 463 5.235616 ACAATACGGCATACAGATTTAACCG 59.764 40.000 0.00 0.00 44.49 4.44
471 472 7.227910 GGCATACAGATTTAACCGGAAGAAATA 59.772 37.037 9.46 0.00 0.00 1.40
478 479 9.238368 AGATTTAACCGGAAGAAATACAATTCA 57.762 29.630 9.46 0.00 0.00 2.57
500 501 8.984891 TTCAGTGTTTCTATGCATAAAAATGG 57.015 30.769 8.40 0.00 0.00 3.16
501 502 8.121305 TCAGTGTTTCTATGCATAAAAATGGT 57.879 30.769 8.40 0.00 0.00 3.55
510 511 4.880759 TGCATAAAAATGGTCCAACAGTG 58.119 39.130 0.00 0.00 0.00 3.66
512 513 5.163364 TGCATAAAAATGGTCCAACAGTGTT 60.163 36.000 1.64 1.64 0.00 3.32
517 518 4.385358 AATGGTCCAACAGTGTTCAAAC 57.615 40.909 5.27 4.59 0.00 2.93
531 532 5.411781 GTGTTCAAACCAAAACACCATACA 58.588 37.500 7.04 0.00 46.03 2.29
536 537 6.740110 TCAAACCAAAACACCATACATACAC 58.260 36.000 0.00 0.00 0.00 2.90
541 542 8.588290 ACCAAAACACCATACATACACAATAT 57.412 30.769 0.00 0.00 0.00 1.28
542 543 9.688091 ACCAAAACACCATACATACACAATATA 57.312 29.630 0.00 0.00 0.00 0.86
579 580 5.888691 ATGTGTGTGTGTGTGTAAGAAAA 57.111 34.783 0.00 0.00 0.00 2.29
581 582 6.260870 TGTGTGTGTGTGTGTAAGAAAATT 57.739 33.333 0.00 0.00 0.00 1.82
582 583 6.089476 TGTGTGTGTGTGTGTAAGAAAATTG 58.911 36.000 0.00 0.00 0.00 2.32
583 584 6.090129 GTGTGTGTGTGTGTAAGAAAATTGT 58.910 36.000 0.00 0.00 0.00 2.71
584 585 7.094762 TGTGTGTGTGTGTGTAAGAAAATTGTA 60.095 33.333 0.00 0.00 0.00 2.41
585 586 7.913297 GTGTGTGTGTGTGTAAGAAAATTGTAT 59.087 33.333 0.00 0.00 0.00 2.29
586 587 9.110502 TGTGTGTGTGTGTAAGAAAATTGTATA 57.889 29.630 0.00 0.00 0.00 1.47
616 617 9.426837 GTATTATATAATTGTTGTGGCCGTAGA 57.573 33.333 13.09 0.00 0.00 2.59
620 621 8.718102 ATATAATTGTTGTGGCCGTAGATATC 57.282 34.615 0.00 0.00 0.00 1.63
629 632 4.750598 GTGGCCGTAGATATCTCCTTTTTC 59.249 45.833 8.95 0.00 0.00 2.29
730 733 1.076265 TCCATCGTCCCGTCCATCT 60.076 57.895 0.00 0.00 0.00 2.90
740 743 1.140852 CCCGTCCATCTATCCAAAGCA 59.859 52.381 0.00 0.00 0.00 3.91
745 748 3.071602 GTCCATCTATCCAAAGCAGGCTA 59.928 47.826 0.00 0.00 0.00 3.93
794 797 4.821589 CTTCCAGGACGCCTCGCC 62.822 72.222 0.00 0.00 0.00 5.54
816 819 0.621571 CTCCCTCCCAACTCCCATCA 60.622 60.000 0.00 0.00 0.00 3.07
817 820 0.178846 TCCCTCCCAACTCCCATCAA 60.179 55.000 0.00 0.00 0.00 2.57
818 821 0.257039 CCCTCCCAACTCCCATCAAG 59.743 60.000 0.00 0.00 0.00 3.02
820 823 1.289160 CTCCCAACTCCCATCAAGGA 58.711 55.000 0.00 0.00 41.22 3.36
821 824 0.991920 TCCCAACTCCCATCAAGGAC 59.008 55.000 0.00 0.00 41.22 3.85
822 825 0.034089 CCCAACTCCCATCAAGGACC 60.034 60.000 0.00 0.00 41.22 4.46
823 826 0.392998 CCAACTCCCATCAAGGACCG 60.393 60.000 0.00 0.00 41.22 4.79
824 827 1.026718 CAACTCCCATCAAGGACCGC 61.027 60.000 0.00 0.00 41.22 5.68
825 828 2.202932 CTCCCATCAAGGACCGCG 60.203 66.667 0.00 0.00 41.22 6.46
826 829 2.682136 TCCCATCAAGGACCGCGA 60.682 61.111 8.23 0.00 41.22 5.87
827 830 2.511600 CCCATCAAGGACCGCGAC 60.512 66.667 8.23 0.17 41.22 5.19
828 831 2.511600 CCATCAAGGACCGCGACC 60.512 66.667 8.23 11.30 41.22 4.79
829 832 2.264480 CATCAAGGACCGCGACCA 59.736 61.111 20.52 4.64 0.00 4.02
830 833 2.100631 CATCAAGGACCGCGACCAC 61.101 63.158 20.52 3.90 0.00 4.16
831 834 3.310860 ATCAAGGACCGCGACCACC 62.311 63.158 20.52 12.31 0.00 4.61
928 931 0.459934 CTCGCTCTCCTTGCTTCCTG 60.460 60.000 0.00 0.00 0.00 3.86
936 939 0.676151 CCTTGCTTCCTGCTGAGACC 60.676 60.000 0.00 0.00 43.37 3.85
953 956 2.892425 CAACCAGATCGCCTCGCC 60.892 66.667 0.00 0.00 0.00 5.54
1005 1008 0.531090 GCTGAGCTGAGCTGATGGAG 60.531 60.000 18.71 0.52 39.88 3.86
1161 1164 2.435059 GTCAAGACCAGCGAGGCC 60.435 66.667 0.00 0.00 43.14 5.19
1402 1414 1.344942 GCTGCTGGACAACGACTACG 61.345 60.000 0.00 0.00 45.75 3.51
1423 1435 3.046087 TCTTCTCGCCGTCGACGT 61.046 61.111 33.49 0.00 40.21 4.34
1481 1493 2.041819 AGTCACCCCCGATCCCTC 60.042 66.667 0.00 0.00 0.00 4.30
1560 1572 5.988310 TTGCATGTCATTTGAGGATTTCT 57.012 34.783 0.00 0.00 0.00 2.52
1686 1703 4.040461 ACATATCTATTTGGGGTCTCCGTG 59.960 45.833 0.00 0.00 38.76 4.94
1709 1726 5.368523 TGTTCTTCTTTCCCCTTCTCTTGTA 59.631 40.000 0.00 0.00 0.00 2.41
1776 1793 6.183360 TGTGTACATATGCCTAGATGTTTCGA 60.183 38.462 1.58 0.00 39.34 3.71
1794 1811 3.556999 TCGACAATTGACCTTTTTCCCA 58.443 40.909 13.59 0.00 0.00 4.37
1795 1812 4.148838 TCGACAATTGACCTTTTTCCCAT 58.851 39.130 13.59 0.00 0.00 4.00
1842 1860 8.273780 ACTGTTTCTCTGATTTTATGATCACC 57.726 34.615 0.00 0.00 32.82 4.02
1859 1881 2.180276 CACCTAGTCCACCTAGTGCTT 58.820 52.381 0.00 0.00 41.48 3.91
1877 1899 0.241749 TTTCTTTGGCATGCTCAGCG 59.758 50.000 18.92 8.63 0.00 5.18
1890 1912 1.660560 CTCAGCGGGCAATTTCTGGG 61.661 60.000 0.00 0.00 0.00 4.45
1891 1913 1.978617 CAGCGGGCAATTTCTGGGT 60.979 57.895 0.00 0.00 0.00 4.51
1937 1959 1.400530 GGTATGGGGAGCTAGCGTGT 61.401 60.000 9.55 0.00 0.00 4.49
1992 2015 2.749076 GTGCCATGAAGCAGTATGAACA 59.251 45.455 0.00 0.00 45.14 3.18
1996 2019 4.142315 GCCATGAAGCAGTATGAACATGTT 60.142 41.667 11.78 11.78 39.69 2.71
2004 2027 6.672147 AGCAGTATGAACATGTTTCTGAAAC 58.328 36.000 22.94 22.94 39.69 2.78
2007 2030 6.207417 CAGTATGAACATGTTTCTGAAACCCT 59.793 38.462 25.66 13.43 39.69 4.34
2016 2039 1.446272 CTGAAACCCTCGCGAGACC 60.446 63.158 36.59 19.19 35.39 3.85
2017 2040 2.154798 CTGAAACCCTCGCGAGACCA 62.155 60.000 36.59 22.22 35.39 4.02
2020 2043 2.156051 AAACCCTCGCGAGACCAGAC 62.156 60.000 36.59 0.00 35.39 3.51
2021 2044 3.062466 CCCTCGCGAGACCAGACA 61.062 66.667 36.59 0.00 35.39 3.41
2022 2045 2.179517 CCTCGCGAGACCAGACAC 59.820 66.667 36.59 0.00 35.39 3.67
2023 2046 2.202362 CTCGCGAGACCAGACACG 60.202 66.667 32.06 0.00 35.39 4.49
2042 2089 3.184379 CACGATCACACGACTGAAACAAT 59.816 43.478 0.00 0.00 37.03 2.71
2044 2091 4.986034 ACGATCACACGACTGAAACAATTA 59.014 37.500 0.00 0.00 37.03 1.40
2051 2098 8.349245 TCACACGACTGAAACAATTATGAAAAT 58.651 29.630 0.00 0.00 0.00 1.82
2082 2139 8.129211 GCGTTTCTTAATATAGCACATTCCTTT 58.871 33.333 0.00 0.00 0.00 3.11
2098 2157 7.550196 CACATTCCTTTTATTTCCCCTTCATTG 59.450 37.037 0.00 0.00 0.00 2.82
2105 2164 3.426787 TTTCCCCTTCATTGCGTCTTA 57.573 42.857 0.00 0.00 0.00 2.10
2123 2182 6.683110 GCGTCTTAGGTGATCAAAGATAGGAA 60.683 42.308 10.69 0.00 32.26 3.36
2131 2190 4.099573 TGATCAAAGATAGGAACCGAGTCC 59.900 45.833 0.00 0.00 38.03 3.85
2139 2198 1.772453 AGGAACCGAGTCCCAAGAAAA 59.228 47.619 1.10 0.00 38.59 2.29
2144 2203 2.294074 CCGAGTCCCAAGAAAACACAA 58.706 47.619 0.00 0.00 0.00 3.33
2197 2256 1.473677 TCGCTGCATGCTGCTTTTTAT 59.526 42.857 36.37 0.00 45.31 1.40
2198 2257 1.850441 CGCTGCATGCTGCTTTTTATC 59.150 47.619 36.37 14.15 45.31 1.75
2206 2268 5.445010 GCATGCTGCTTTTTATCCTTTTTCG 60.445 40.000 11.37 0.00 40.96 3.46
2216 2278 8.879342 TTTTTATCCTTTTTCGCAATTCTTCA 57.121 26.923 0.00 0.00 0.00 3.02
2221 2283 6.381801 TCCTTTTTCGCAATTCTTCAGAATC 58.618 36.000 2.47 0.00 43.41 2.52
2222 2284 6.207417 TCCTTTTTCGCAATTCTTCAGAATCT 59.793 34.615 2.47 0.00 43.41 2.40
2223 2285 7.390440 TCCTTTTTCGCAATTCTTCAGAATCTA 59.610 33.333 2.47 0.00 43.41 1.98
2256 2318 8.800031 GTTTAGCATCGTTTGACTTGTTTTTAA 58.200 29.630 0.00 0.00 0.00 1.52
2313 2375 9.962759 GCTTCATTTTATTGATTTTAGTTGCTG 57.037 29.630 0.00 0.00 0.00 4.41
2327 2389 2.753452 AGTTGCTGCCATGATTCTTCTG 59.247 45.455 0.00 0.00 0.00 3.02
2328 2390 1.100510 TGCTGCCATGATTCTTCTGC 58.899 50.000 0.00 0.00 0.00 4.26
2356 2418 1.404035 GAATGGTTGGGCGTTCCATAC 59.596 52.381 6.43 3.22 46.52 2.39
2367 2429 2.986479 GCGTTCCATACTTTGCCTTTTG 59.014 45.455 0.00 0.00 0.00 2.44
2368 2430 3.552068 GCGTTCCATACTTTGCCTTTTGT 60.552 43.478 0.00 0.00 0.00 2.83
2369 2431 4.616953 CGTTCCATACTTTGCCTTTTGTT 58.383 39.130 0.00 0.00 0.00 2.83
2439 2505 6.775594 AGTACTTTTGTTCCTTGAGCTTTT 57.224 33.333 0.00 0.00 0.00 2.27
2440 2506 6.796426 AGTACTTTTGTTCCTTGAGCTTTTC 58.204 36.000 0.00 0.00 0.00 2.29
2441 2507 5.921962 ACTTTTGTTCCTTGAGCTTTTCT 57.078 34.783 0.00 0.00 0.00 2.52
2442 2508 5.654497 ACTTTTGTTCCTTGAGCTTTTCTG 58.346 37.500 0.00 0.00 0.00 3.02
2443 2509 3.715628 TTGTTCCTTGAGCTTTTCTGC 57.284 42.857 0.00 0.00 0.00 4.26
2452 2518 2.758736 AGCTTTTCTGCTCGATCTGT 57.241 45.000 0.00 0.00 39.34 3.41
2453 2519 2.344950 AGCTTTTCTGCTCGATCTGTG 58.655 47.619 0.00 0.00 39.34 3.66
2454 2520 1.396301 GCTTTTCTGCTCGATCTGTGG 59.604 52.381 0.00 0.00 0.00 4.17
2455 2521 2.932622 GCTTTTCTGCTCGATCTGTGGA 60.933 50.000 0.00 0.00 0.00 4.02
2456 2522 3.529533 CTTTTCTGCTCGATCTGTGGAT 58.470 45.455 0.00 0.00 34.45 3.41
2457 2523 2.591571 TTCTGCTCGATCTGTGGATG 57.408 50.000 0.00 0.00 31.46 3.51
2458 2524 1.478631 TCTGCTCGATCTGTGGATGT 58.521 50.000 0.00 0.00 31.46 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.845740 AGAAAAGGTGGTTGCTTTTTATAATTT 57.154 25.926 0.00 0.00 31.44 1.82
12 13 9.845740 AAGAAAAGGTGGTTGCTTTTTATAATT 57.154 25.926 0.00 0.00 31.44 1.40
13 14 9.271828 CAAGAAAAGGTGGTTGCTTTTTATAAT 57.728 29.630 0.00 0.00 31.44 1.28
14 15 8.261522 ACAAGAAAAGGTGGTTGCTTTTTATAA 58.738 29.630 0.00 0.00 31.44 0.98
15 16 7.787028 ACAAGAAAAGGTGGTTGCTTTTTATA 58.213 30.769 0.00 0.00 31.44 0.98
16 17 6.649155 ACAAGAAAAGGTGGTTGCTTTTTAT 58.351 32.000 0.00 0.00 31.44 1.40
17 18 6.043854 ACAAGAAAAGGTGGTTGCTTTTTA 57.956 33.333 0.00 0.00 31.44 1.52
18 19 4.905429 ACAAGAAAAGGTGGTTGCTTTTT 58.095 34.783 0.00 0.00 31.44 1.94
19 20 4.551702 ACAAGAAAAGGTGGTTGCTTTT 57.448 36.364 0.00 0.00 33.61 2.27
20 21 4.222810 AGAACAAGAAAAGGTGGTTGCTTT 59.777 37.500 0.00 0.00 0.00 3.51
21 22 3.769300 AGAACAAGAAAAGGTGGTTGCTT 59.231 39.130 0.00 0.00 0.00 3.91
22 23 3.365472 AGAACAAGAAAAGGTGGTTGCT 58.635 40.909 0.00 0.00 0.00 3.91
23 24 3.801114 AGAACAAGAAAAGGTGGTTGC 57.199 42.857 0.00 0.00 0.00 4.17
24 25 5.478407 ACAAAGAACAAGAAAAGGTGGTTG 58.522 37.500 0.00 0.00 0.00 3.77
25 26 5.738619 ACAAAGAACAAGAAAAGGTGGTT 57.261 34.783 0.00 0.00 0.00 3.67
26 27 6.844097 TTACAAAGAACAAGAAAAGGTGGT 57.156 33.333 0.00 0.00 0.00 4.16
27 28 7.488322 TCATTACAAAGAACAAGAAAAGGTGG 58.512 34.615 0.00 0.00 0.00 4.61
28 29 9.533253 AATCATTACAAAGAACAAGAAAAGGTG 57.467 29.630 0.00 0.00 0.00 4.00
62 63 6.036470 ACAAAGAACAAGAAAAGCTAGTTGC 58.964 36.000 0.00 0.00 43.29 4.17
63 64 8.398665 ACTACAAAGAACAAGAAAAGCTAGTTG 58.601 33.333 0.00 0.00 0.00 3.16
64 65 8.507524 ACTACAAAGAACAAGAAAAGCTAGTT 57.492 30.769 0.00 0.00 0.00 2.24
65 66 8.398665 CAACTACAAAGAACAAGAAAAGCTAGT 58.601 33.333 0.00 0.00 0.00 2.57
66 67 8.612619 TCAACTACAAAGAACAAGAAAAGCTAG 58.387 33.333 0.00 0.00 0.00 3.42
67 68 8.500753 TCAACTACAAAGAACAAGAAAAGCTA 57.499 30.769 0.00 0.00 0.00 3.32
68 69 7.391148 TCAACTACAAAGAACAAGAAAAGCT 57.609 32.000 0.00 0.00 0.00 3.74
69 70 8.460831 TTTCAACTACAAAGAACAAGAAAAGC 57.539 30.769 0.00 0.00 0.00 3.51
93 94 4.503123 GGAATACCAGCAAGTTGCCTTTTT 60.503 41.667 24.02 11.60 46.52 1.94
94 95 3.006859 GGAATACCAGCAAGTTGCCTTTT 59.993 43.478 24.02 10.91 46.52 2.27
95 96 2.562738 GGAATACCAGCAAGTTGCCTTT 59.437 45.455 24.02 10.71 46.52 3.11
96 97 2.171003 GGAATACCAGCAAGTTGCCTT 58.829 47.619 24.02 11.07 46.52 4.35
97 98 1.616994 GGGAATACCAGCAAGTTGCCT 60.617 52.381 24.02 8.98 46.52 4.75
98 99 0.817654 GGGAATACCAGCAAGTTGCC 59.182 55.000 24.02 6.84 46.52 4.52
99 100 1.839424 AGGGAATACCAGCAAGTTGC 58.161 50.000 20.44 20.44 43.89 4.17
100 101 3.950397 TGTAGGGAATACCAGCAAGTTG 58.050 45.455 0.00 0.00 43.89 3.16
101 102 4.862641 ATGTAGGGAATACCAGCAAGTT 57.137 40.909 0.00 0.00 43.89 2.66
102 103 4.526970 CAATGTAGGGAATACCAGCAAGT 58.473 43.478 0.00 0.00 43.89 3.16
103 104 3.316308 GCAATGTAGGGAATACCAGCAAG 59.684 47.826 0.00 0.00 43.89 4.01
104 105 3.287222 GCAATGTAGGGAATACCAGCAA 58.713 45.455 0.00 0.00 43.89 3.91
105 106 2.240921 TGCAATGTAGGGAATACCAGCA 59.759 45.455 0.00 0.00 43.89 4.41
106 107 2.930950 TGCAATGTAGGGAATACCAGC 58.069 47.619 0.00 0.00 43.89 4.85
107 108 5.913137 TTTTGCAATGTAGGGAATACCAG 57.087 39.130 0.00 0.00 43.89 4.00
108 109 6.219417 CATTTTGCAATGTAGGGAATACCA 57.781 37.500 0.00 0.00 37.37 3.25
120 121 5.444983 CAAACCATGTCACATTTTGCAATG 58.555 37.500 0.00 0.00 44.90 2.82
121 122 4.515944 CCAAACCATGTCACATTTTGCAAT 59.484 37.500 0.00 0.00 0.00 3.56
122 123 3.875727 CCAAACCATGTCACATTTTGCAA 59.124 39.130 8.81 0.00 0.00 4.08
123 124 3.464907 CCAAACCATGTCACATTTTGCA 58.535 40.909 8.81 0.00 0.00 4.08
124 125 2.223845 GCCAAACCATGTCACATTTTGC 59.776 45.455 8.81 0.00 0.00 3.68
125 126 3.495377 CAGCCAAACCATGTCACATTTTG 59.505 43.478 7.67 7.67 0.00 2.44
126 127 3.134442 ACAGCCAAACCATGTCACATTTT 59.866 39.130 0.00 0.00 0.00 1.82
127 128 2.699846 ACAGCCAAACCATGTCACATTT 59.300 40.909 0.00 0.00 0.00 2.32
128 129 2.297033 GACAGCCAAACCATGTCACATT 59.703 45.455 0.00 0.00 42.30 2.71
129 130 1.888512 GACAGCCAAACCATGTCACAT 59.111 47.619 0.00 0.00 42.30 3.21
130 131 1.317613 GACAGCCAAACCATGTCACA 58.682 50.000 0.00 0.00 42.30 3.58
131 132 0.598065 GGACAGCCAAACCATGTCAC 59.402 55.000 6.86 0.00 44.08 3.67
132 133 0.184692 TGGACAGCCAAACCATGTCA 59.815 50.000 6.86 0.00 44.08 3.58
133 134 3.034924 TGGACAGCCAAACCATGTC 57.965 52.632 0.00 0.00 42.49 3.06
142 143 4.202202 CCAAAGTACAAAATTGGACAGCCA 60.202 41.667 10.94 0.00 44.60 4.75
143 144 4.306600 CCAAAGTACAAAATTGGACAGCC 58.693 43.478 10.94 0.00 44.60 4.85
144 145 3.740832 GCCAAAGTACAAAATTGGACAGC 59.259 43.478 18.32 4.61 44.60 4.40
148 149 4.590647 TCATGGCCAAAGTACAAAATTGGA 59.409 37.500 10.96 4.61 45.14 3.53
149 150 4.892433 TCATGGCCAAAGTACAAAATTGG 58.108 39.130 10.96 12.67 45.11 3.16
150 151 6.857777 TTTCATGGCCAAAGTACAAAATTG 57.142 33.333 10.96 0.00 0.00 2.32
151 152 8.351461 CAAATTTCATGGCCAAAGTACAAAATT 58.649 29.630 10.96 10.56 0.00 1.82
152 153 7.521910 GCAAATTTCATGGCCAAAGTACAAAAT 60.522 33.333 10.96 4.93 0.00 1.82
153 154 6.238593 GCAAATTTCATGGCCAAAGTACAAAA 60.239 34.615 10.96 2.59 0.00 2.44
154 155 5.238214 GCAAATTTCATGGCCAAAGTACAAA 59.762 36.000 10.96 2.96 0.00 2.83
155 156 4.754114 GCAAATTTCATGGCCAAAGTACAA 59.246 37.500 10.96 0.00 0.00 2.41
156 157 4.314121 GCAAATTTCATGGCCAAAGTACA 58.686 39.130 10.96 0.00 0.00 2.90
157 158 3.367630 CGCAAATTTCATGGCCAAAGTAC 59.632 43.478 10.96 0.00 0.00 2.73
158 159 3.583806 CGCAAATTTCATGGCCAAAGTA 58.416 40.909 10.96 0.00 0.00 2.24
159 160 2.415776 CGCAAATTTCATGGCCAAAGT 58.584 42.857 10.96 0.00 0.00 2.66
160 161 1.129064 GCGCAAATTTCATGGCCAAAG 59.871 47.619 10.96 5.73 0.00 2.77
161 162 1.155042 GCGCAAATTTCATGGCCAAA 58.845 45.000 10.96 0.00 0.00 3.28
162 163 0.034476 TGCGCAAATTTCATGGCCAA 59.966 45.000 10.96 0.00 0.00 4.52
163 164 0.669932 GTGCGCAAATTTCATGGCCA 60.670 50.000 14.00 8.56 0.00 5.36
164 165 0.669932 TGTGCGCAAATTTCATGGCC 60.670 50.000 14.00 0.00 0.00 5.36
165 166 1.361793 ATGTGCGCAAATTTCATGGC 58.638 45.000 14.00 0.00 0.00 4.40
166 167 4.175516 AGTAATGTGCGCAAATTTCATGG 58.824 39.130 29.66 0.00 0.00 3.66
167 168 5.766702 AAGTAATGTGCGCAAATTTCATG 57.233 34.783 29.66 0.00 0.00 3.07
168 169 5.695816 ACAAAGTAATGTGCGCAAATTTCAT 59.304 32.000 29.66 17.21 30.82 2.57
169 170 5.046529 ACAAAGTAATGTGCGCAAATTTCA 58.953 33.333 29.66 15.56 30.82 2.69
170 171 5.574815 ACAAAGTAATGTGCGCAAATTTC 57.425 34.783 29.66 24.04 30.82 2.17
171 172 5.736338 CAACAAAGTAATGTGCGCAAATTT 58.264 33.333 29.66 14.78 32.81 1.82
172 173 4.318689 GCAACAAAGTAATGTGCGCAAATT 60.319 37.500 27.82 27.82 34.41 1.82
173 174 3.184178 GCAACAAAGTAATGTGCGCAAAT 59.816 39.130 14.00 10.47 34.41 2.32
174 175 2.537625 GCAACAAAGTAATGTGCGCAAA 59.462 40.909 14.00 7.48 34.41 3.68
175 176 2.123342 GCAACAAAGTAATGTGCGCAA 58.877 42.857 14.00 2.60 34.41 4.85
176 177 1.601663 GGCAACAAAGTAATGTGCGCA 60.602 47.619 5.66 5.66 35.39 6.09
177 178 1.059942 GGCAACAAAGTAATGTGCGC 58.940 50.000 0.00 0.00 32.81 6.09
178 179 1.000827 TGGGCAACAAAGTAATGTGCG 60.001 47.619 0.00 0.00 39.74 5.34
179 180 2.035832 ACTGGGCAACAAAGTAATGTGC 59.964 45.455 0.00 0.00 33.66 4.57
180 181 4.320608 AACTGGGCAACAAAGTAATGTG 57.679 40.909 0.00 0.00 34.26 3.21
181 182 5.351948 AAAACTGGGCAACAAAGTAATGT 57.648 34.783 0.00 0.00 34.26 2.71
182 183 7.778470 TTTAAAACTGGGCAACAAAGTAATG 57.222 32.000 0.00 0.00 34.26 1.90
183 184 8.794335 TTTTTAAAACTGGGCAACAAAGTAAT 57.206 26.923 0.00 0.00 34.26 1.89
184 185 7.148390 GCTTTTTAAAACTGGGCAACAAAGTAA 60.148 33.333 0.00 0.00 34.26 2.24
185 186 6.314152 GCTTTTTAAAACTGGGCAACAAAGTA 59.686 34.615 0.00 0.00 34.26 2.24
186 187 5.123186 GCTTTTTAAAACTGGGCAACAAAGT 59.877 36.000 0.00 0.00 36.67 2.66
187 188 5.448496 GGCTTTTTAAAACTGGGCAACAAAG 60.448 40.000 0.00 0.00 39.74 2.77
188 189 4.396478 GGCTTTTTAAAACTGGGCAACAAA 59.604 37.500 0.00 0.00 39.74 2.83
189 190 3.942115 GGCTTTTTAAAACTGGGCAACAA 59.058 39.130 0.00 0.00 39.74 2.83
190 191 3.055094 TGGCTTTTTAAAACTGGGCAACA 60.055 39.130 16.13 5.83 39.74 3.33
191 192 3.536570 TGGCTTTTTAAAACTGGGCAAC 58.463 40.909 16.13 4.06 0.00 4.17
192 193 3.452627 TCTGGCTTTTTAAAACTGGGCAA 59.547 39.130 17.84 7.76 0.00 4.52
193 194 3.034635 TCTGGCTTTTTAAAACTGGGCA 58.965 40.909 16.93 16.93 0.00 5.36
194 195 3.744238 TCTGGCTTTTTAAAACTGGGC 57.256 42.857 0.00 7.15 0.00 5.36
195 196 5.696270 GTGATTCTGGCTTTTTAAAACTGGG 59.304 40.000 0.00 0.00 0.00 4.45
196 197 6.279882 TGTGATTCTGGCTTTTTAAAACTGG 58.720 36.000 0.00 0.00 0.00 4.00
197 198 7.706179 TCTTGTGATTCTGGCTTTTTAAAACTG 59.294 33.333 0.00 0.00 0.00 3.16
198 199 7.781056 TCTTGTGATTCTGGCTTTTTAAAACT 58.219 30.769 0.00 0.00 0.00 2.66
199 200 8.419076 TTCTTGTGATTCTGGCTTTTTAAAAC 57.581 30.769 0.00 0.00 0.00 2.43
200 201 9.097257 CTTTCTTGTGATTCTGGCTTTTTAAAA 57.903 29.630 0.00 0.00 0.00 1.52
201 202 8.257306 ACTTTCTTGTGATTCTGGCTTTTTAAA 58.743 29.630 0.00 0.00 0.00 1.52
202 203 7.706179 CACTTTCTTGTGATTCTGGCTTTTTAA 59.294 33.333 0.00 0.00 40.12 1.52
203 204 7.068103 TCACTTTCTTGTGATTCTGGCTTTTTA 59.932 33.333 0.00 0.00 41.43 1.52
204 205 6.044682 CACTTTCTTGTGATTCTGGCTTTTT 58.955 36.000 0.00 0.00 40.12 1.94
205 206 5.360714 TCACTTTCTTGTGATTCTGGCTTTT 59.639 36.000 0.00 0.00 41.43 2.27
206 207 4.889409 TCACTTTCTTGTGATTCTGGCTTT 59.111 37.500 0.00 0.00 41.43 3.51
207 208 4.464008 TCACTTTCTTGTGATTCTGGCTT 58.536 39.130 0.00 0.00 41.43 4.35
208 209 4.090761 TCACTTTCTTGTGATTCTGGCT 57.909 40.909 0.00 0.00 41.43 4.75
217 218 9.681692 TGATTATGTCAAAATCACTTTCTTGTG 57.318 29.630 0.00 0.00 38.19 3.33
233 234 9.850198 TGGACTTGATATCATTTGATTATGTCA 57.150 29.630 6.17 0.00 36.05 3.58
246 247 9.890629 GGCTTGTATTATATGGACTTGATATCA 57.109 33.333 0.00 0.00 0.00 2.15
247 248 9.890629 TGGCTTGTATTATATGGACTTGATATC 57.109 33.333 0.00 0.00 0.00 1.63
248 249 9.672673 GTGGCTTGTATTATATGGACTTGATAT 57.327 33.333 0.00 0.00 0.00 1.63
249 250 7.817478 CGTGGCTTGTATTATATGGACTTGATA 59.183 37.037 0.00 0.00 0.00 2.15
250 251 6.650807 CGTGGCTTGTATTATATGGACTTGAT 59.349 38.462 0.00 0.00 0.00 2.57
251 252 5.989168 CGTGGCTTGTATTATATGGACTTGA 59.011 40.000 0.00 0.00 0.00 3.02
252 253 5.179368 CCGTGGCTTGTATTATATGGACTTG 59.821 44.000 0.00 0.00 0.00 3.16
253 254 5.305585 CCGTGGCTTGTATTATATGGACTT 58.694 41.667 0.00 0.00 0.00 3.01
254 255 4.262894 CCCGTGGCTTGTATTATATGGACT 60.263 45.833 0.00 0.00 0.00 3.85
255 256 4.000988 CCCGTGGCTTGTATTATATGGAC 58.999 47.826 0.00 0.00 0.00 4.02
256 257 3.649023 ACCCGTGGCTTGTATTATATGGA 59.351 43.478 0.00 0.00 0.00 3.41
257 258 4.000988 GACCCGTGGCTTGTATTATATGG 58.999 47.826 0.00 0.00 0.00 2.74
258 259 4.894784 AGACCCGTGGCTTGTATTATATG 58.105 43.478 0.00 0.00 0.00 1.78
259 260 5.778750 ACTAGACCCGTGGCTTGTATTATAT 59.221 40.000 0.00 0.00 0.00 0.86
260 261 5.142639 ACTAGACCCGTGGCTTGTATTATA 58.857 41.667 0.00 0.00 0.00 0.98
261 262 3.965347 ACTAGACCCGTGGCTTGTATTAT 59.035 43.478 0.00 0.00 0.00 1.28
262 263 3.368248 ACTAGACCCGTGGCTTGTATTA 58.632 45.455 0.00 0.00 0.00 0.98
263 264 2.185387 ACTAGACCCGTGGCTTGTATT 58.815 47.619 0.00 0.00 0.00 1.89
264 265 1.861982 ACTAGACCCGTGGCTTGTAT 58.138 50.000 0.00 0.00 0.00 2.29
265 266 2.291153 ACTACTAGACCCGTGGCTTGTA 60.291 50.000 0.00 0.00 0.00 2.41
266 267 1.183549 CTACTAGACCCGTGGCTTGT 58.816 55.000 0.00 0.00 0.00 3.16
267 268 1.183549 ACTACTAGACCCGTGGCTTG 58.816 55.000 0.00 0.00 0.00 4.01
268 269 1.934410 AACTACTAGACCCGTGGCTT 58.066 50.000 0.00 0.00 0.00 4.35
269 270 1.549170 CAAACTACTAGACCCGTGGCT 59.451 52.381 0.00 0.00 0.00 4.75
270 271 1.405121 CCAAACTACTAGACCCGTGGC 60.405 57.143 0.00 0.00 0.00 5.01
271 272 1.897802 ACCAAACTACTAGACCCGTGG 59.102 52.381 0.00 0.77 0.00 4.94
272 273 3.428589 GCTACCAAACTACTAGACCCGTG 60.429 52.174 0.00 0.00 0.00 4.94
273 274 2.757314 GCTACCAAACTACTAGACCCGT 59.243 50.000 0.00 0.00 0.00 5.28
274 275 2.223433 CGCTACCAAACTACTAGACCCG 60.223 54.545 0.00 0.00 0.00 5.28
275 276 2.757314 ACGCTACCAAACTACTAGACCC 59.243 50.000 0.00 0.00 0.00 4.46
276 277 3.192212 ACACGCTACCAAACTACTAGACC 59.808 47.826 0.00 0.00 0.00 3.85
277 278 4.164294 CACACGCTACCAAACTACTAGAC 58.836 47.826 0.00 0.00 0.00 2.59
278 279 3.366679 GCACACGCTACCAAACTACTAGA 60.367 47.826 0.00 0.00 34.30 2.43
279 280 2.921754 GCACACGCTACCAAACTACTAG 59.078 50.000 0.00 0.00 34.30 2.57
280 281 2.950433 GCACACGCTACCAAACTACTA 58.050 47.619 0.00 0.00 34.30 1.82
281 282 1.792006 GCACACGCTACCAAACTACT 58.208 50.000 0.00 0.00 34.30 2.57
293 294 2.032924 AGGTCTTTTTACAAGCACACGC 59.967 45.455 0.00 0.00 38.99 5.34
294 295 3.963383 AGGTCTTTTTACAAGCACACG 57.037 42.857 0.00 0.00 0.00 4.49
295 296 5.243426 TCAAGGTCTTTTTACAAGCACAC 57.757 39.130 0.00 0.00 0.00 3.82
296 297 6.463995 AATCAAGGTCTTTTTACAAGCACA 57.536 33.333 0.00 0.00 0.00 4.57
297 298 9.476202 AATAAATCAAGGTCTTTTTACAAGCAC 57.524 29.630 0.00 0.00 0.00 4.40
319 320 9.730705 CTGCCCTCTCTGATATCATTTAAATAA 57.269 33.333 5.72 0.00 0.00 1.40
320 321 7.826252 GCTGCCCTCTCTGATATCATTTAAATA 59.174 37.037 5.72 0.00 0.00 1.40
321 322 6.658391 GCTGCCCTCTCTGATATCATTTAAAT 59.342 38.462 5.72 0.00 0.00 1.40
322 323 6.000219 GCTGCCCTCTCTGATATCATTTAAA 59.000 40.000 5.72 0.00 0.00 1.52
323 324 5.513788 GGCTGCCCTCTCTGATATCATTTAA 60.514 44.000 7.66 0.00 0.00 1.52
324 325 4.019860 GGCTGCCCTCTCTGATATCATTTA 60.020 45.833 7.66 0.00 0.00 1.40
325 326 3.244840 GGCTGCCCTCTCTGATATCATTT 60.245 47.826 7.66 0.00 0.00 2.32
326 327 2.305343 GGCTGCCCTCTCTGATATCATT 59.695 50.000 7.66 0.00 0.00 2.57
327 328 1.907936 GGCTGCCCTCTCTGATATCAT 59.092 52.381 7.66 0.00 0.00 2.45
328 329 1.132913 AGGCTGCCCTCTCTGATATCA 60.133 52.381 16.57 5.07 36.46 2.15
329 330 1.643310 AGGCTGCCCTCTCTGATATC 58.357 55.000 16.57 0.00 36.46 1.63
330 331 3.888772 AGGCTGCCCTCTCTGATAT 57.111 52.632 16.57 0.00 36.46 1.63
339 340 1.303970 GCAAAAGAGAGGCTGCCCT 60.304 57.895 16.57 12.30 46.74 5.19
340 341 1.303970 AGCAAAAGAGAGGCTGCCC 60.304 57.895 16.57 7.08 36.34 5.36
341 342 0.607489 TGAGCAAAAGAGAGGCTGCC 60.607 55.000 11.65 11.65 38.15 4.85
342 343 1.242076 TTGAGCAAAAGAGAGGCTGC 58.758 50.000 0.00 0.00 38.15 5.25
343 344 3.996150 TTTTGAGCAAAAGAGAGGCTG 57.004 42.857 4.39 0.00 38.15 4.85
344 345 9.804977 ATATATATTTTGAGCAAAAGAGAGGCT 57.195 29.630 13.11 0.00 42.72 4.58
367 368 9.959693 ATGTGCCTTATATTAGGGAGAGTATAT 57.040 33.333 9.74 0.00 36.20 0.86
369 370 9.959693 ATATGTGCCTTATATTAGGGAGAGTAT 57.040 33.333 9.74 3.39 36.20 2.12
370 371 9.422681 GATATGTGCCTTATATTAGGGAGAGTA 57.577 37.037 9.74 1.36 36.20 2.59
371 372 7.068839 CGATATGTGCCTTATATTAGGGAGAGT 59.931 40.741 9.74 0.00 36.20 3.24
372 373 7.068839 ACGATATGTGCCTTATATTAGGGAGAG 59.931 40.741 9.74 0.00 36.20 3.20
373 374 6.895756 ACGATATGTGCCTTATATTAGGGAGA 59.104 38.462 9.74 5.77 36.20 3.71
374 375 7.113658 ACGATATGTGCCTTATATTAGGGAG 57.886 40.000 9.74 0.00 36.20 4.30
375 376 7.179516 TGAACGATATGTGCCTTATATTAGGGA 59.820 37.037 9.74 3.80 35.74 4.20
376 377 7.327975 TGAACGATATGTGCCTTATATTAGGG 58.672 38.462 9.74 0.00 35.74 3.53
377 378 8.656849 GTTGAACGATATGTGCCTTATATTAGG 58.343 37.037 3.26 3.26 38.40 2.69
378 379 9.424319 AGTTGAACGATATGTGCCTTATATTAG 57.576 33.333 0.00 0.00 0.00 1.73
380 381 9.772973 TTAGTTGAACGATATGTGCCTTATATT 57.227 29.630 0.00 0.00 0.00 1.28
381 382 9.944376 ATTAGTTGAACGATATGTGCCTTATAT 57.056 29.630 0.00 0.00 0.00 0.86
382 383 9.772973 AATTAGTTGAACGATATGTGCCTTATA 57.227 29.630 0.00 0.00 0.00 0.98
383 384 8.559536 CAATTAGTTGAACGATATGTGCCTTAT 58.440 33.333 0.00 0.00 37.53 1.73
384 385 7.551262 ACAATTAGTTGAACGATATGTGCCTTA 59.449 33.333 4.81 0.00 38.71 2.69
385 386 6.374333 ACAATTAGTTGAACGATATGTGCCTT 59.626 34.615 4.81 0.00 38.71 4.35
386 387 5.880332 ACAATTAGTTGAACGATATGTGCCT 59.120 36.000 4.81 0.00 38.71 4.75
387 388 5.965334 CACAATTAGTTGAACGATATGTGCC 59.035 40.000 4.81 0.00 38.71 5.01
388 389 5.965334 CCACAATTAGTTGAACGATATGTGC 59.035 40.000 16.29 0.00 38.71 4.57
389 390 6.093495 ACCCACAATTAGTTGAACGATATGTG 59.907 38.462 15.37 15.37 38.71 3.21
390 391 6.177610 ACCCACAATTAGTTGAACGATATGT 58.822 36.000 4.81 0.00 38.71 2.29
391 392 6.677781 ACCCACAATTAGTTGAACGATATG 57.322 37.500 4.81 0.00 38.71 1.78
392 393 8.795842 TTAACCCACAATTAGTTGAACGATAT 57.204 30.769 4.81 0.00 38.71 1.63
393 394 8.505625 GTTTAACCCACAATTAGTTGAACGATA 58.494 33.333 4.81 0.00 38.71 2.92
394 395 7.364970 GTTTAACCCACAATTAGTTGAACGAT 58.635 34.615 4.81 0.00 38.71 3.73
395 396 6.238703 GGTTTAACCCACAATTAGTTGAACGA 60.239 38.462 2.04 0.00 39.52 3.85
396 397 5.916320 GGTTTAACCCACAATTAGTTGAACG 59.084 40.000 2.04 0.00 39.52 3.95
397 398 6.807789 TGGTTTAACCCACAATTAGTTGAAC 58.192 36.000 12.02 0.00 37.50 3.18
398 399 7.287927 TCATGGTTTAACCCACAATTAGTTGAA 59.712 33.333 12.02 0.00 37.50 2.69
399 400 6.778069 TCATGGTTTAACCCACAATTAGTTGA 59.222 34.615 12.02 0.00 37.50 3.18
400 401 6.987386 TCATGGTTTAACCCACAATTAGTTG 58.013 36.000 12.02 0.00 37.50 3.16
401 402 7.604657 TTCATGGTTTAACCCACAATTAGTT 57.395 32.000 12.02 0.00 37.50 2.24
402 403 7.604657 TTTCATGGTTTAACCCACAATTAGT 57.395 32.000 12.02 0.00 37.50 2.24
403 404 9.500785 AAATTTCATGGTTTAACCCACAATTAG 57.499 29.630 12.02 0.00 37.50 1.73
404 405 9.277783 CAAATTTCATGGTTTAACCCACAATTA 57.722 29.630 12.02 0.00 37.50 1.40
405 406 7.995488 TCAAATTTCATGGTTTAACCCACAATT 59.005 29.630 12.02 7.98 37.50 2.32
406 407 7.512992 TCAAATTTCATGGTTTAACCCACAAT 58.487 30.769 12.02 2.37 37.50 2.71
416 417 8.558973 TTGTGTTTTCTCAAATTTCATGGTTT 57.441 26.923 0.00 0.00 31.63 3.27
418 419 9.260002 GTATTGTGTTTTCTCAAATTTCATGGT 57.740 29.630 0.00 0.00 36.97 3.55
419 420 8.427012 CGTATTGTGTTTTCTCAAATTTCATGG 58.573 33.333 0.00 0.00 36.97 3.66
426 427 5.446143 TGCCGTATTGTGTTTTCTCAAAT 57.554 34.783 0.00 0.00 36.97 2.32
428 429 5.470437 TGTATGCCGTATTGTGTTTTCTCAA 59.530 36.000 0.00 0.00 37.63 3.02
429 430 4.998033 TGTATGCCGTATTGTGTTTTCTCA 59.002 37.500 0.00 0.00 0.00 3.27
430 431 5.350365 TCTGTATGCCGTATTGTGTTTTCTC 59.650 40.000 0.00 0.00 0.00 2.87
431 432 5.242434 TCTGTATGCCGTATTGTGTTTTCT 58.758 37.500 0.00 0.00 0.00 2.52
432 433 5.539582 TCTGTATGCCGTATTGTGTTTTC 57.460 39.130 0.00 0.00 0.00 2.29
435 436 7.414762 GGTTAAATCTGTATGCCGTATTGTGTT 60.415 37.037 0.00 0.00 0.00 3.32
438 439 5.235616 CGGTTAAATCTGTATGCCGTATTGT 59.764 40.000 0.00 0.00 33.87 2.71
439 440 5.333798 CCGGTTAAATCTGTATGCCGTATTG 60.334 44.000 0.00 0.00 36.43 1.90
440 441 4.753107 CCGGTTAAATCTGTATGCCGTATT 59.247 41.667 0.00 0.00 36.43 1.89
442 443 3.384146 TCCGGTTAAATCTGTATGCCGTA 59.616 43.478 0.00 0.00 36.43 4.02
443 444 2.168936 TCCGGTTAAATCTGTATGCCGT 59.831 45.455 0.00 0.00 36.43 5.68
444 445 2.828877 TCCGGTTAAATCTGTATGCCG 58.171 47.619 0.00 0.00 37.72 5.69
453 454 9.503427 CTGAATTGTATTTCTTCCGGTTAAATC 57.497 33.333 0.00 2.40 0.00 2.17
458 459 5.768164 ACACTGAATTGTATTTCTTCCGGTT 59.232 36.000 0.00 0.00 0.00 4.44
460 461 5.880054 ACACTGAATTGTATTTCTTCCGG 57.120 39.130 0.00 0.00 0.00 5.14
471 472 9.979578 TTTTTATGCATAGAAACACTGAATTGT 57.020 25.926 16.23 0.00 0.00 2.71
478 479 7.178274 TGGACCATTTTTATGCATAGAAACACT 59.822 33.333 20.97 6.54 0.00 3.55
487 488 5.011943 ACACTGTTGGACCATTTTTATGCAT 59.988 36.000 3.79 3.79 0.00 3.96
498 499 2.096248 GGTTTGAACACTGTTGGACCA 58.904 47.619 0.00 0.00 0.00 4.02
500 501 3.859411 TTGGTTTGAACACTGTTGGAC 57.141 42.857 0.00 0.00 0.00 4.02
501 502 4.039245 TGTTTTGGTTTGAACACTGTTGGA 59.961 37.500 0.00 0.00 31.30 3.53
510 511 7.168469 GTGTATGTATGGTGTTTTGGTTTGAAC 59.832 37.037 0.00 0.00 0.00 3.18
512 513 6.321435 TGTGTATGTATGGTGTTTTGGTTTGA 59.679 34.615 0.00 0.00 0.00 2.69
553 554 8.840833 TTTCTTACACACACACACACATATAT 57.159 30.769 0.00 0.00 0.00 0.86
554 555 8.664211 TTTTCTTACACACACACACACATATA 57.336 30.769 0.00 0.00 0.00 0.86
555 556 7.561021 TTTTCTTACACACACACACACATAT 57.439 32.000 0.00 0.00 0.00 1.78
556 557 6.986904 TTTTCTTACACACACACACACATA 57.013 33.333 0.00 0.00 0.00 2.29
557 558 5.888691 TTTTCTTACACACACACACACAT 57.111 34.783 0.00 0.00 0.00 3.21
558 559 5.888691 ATTTTCTTACACACACACACACA 57.111 34.783 0.00 0.00 0.00 3.72
559 560 6.090129 ACAATTTTCTTACACACACACACAC 58.910 36.000 0.00 0.00 0.00 3.82
560 561 6.260870 ACAATTTTCTTACACACACACACA 57.739 33.333 0.00 0.00 0.00 3.72
587 588 9.727859 ACGGCCACAACAATTATATAATACATA 57.272 29.630 8.39 0.00 0.00 2.29
588 589 8.630054 ACGGCCACAACAATTATATAATACAT 57.370 30.769 8.39 0.00 0.00 2.29
589 590 9.210329 CTACGGCCACAACAATTATATAATACA 57.790 33.333 8.39 0.00 0.00 2.29
590 591 9.426837 TCTACGGCCACAACAATTATATAATAC 57.573 33.333 8.39 0.00 0.00 1.89
597 598 6.769512 AGATATCTACGGCCACAACAATTAT 58.230 36.000 2.53 0.00 0.00 1.28
599 600 5.036117 AGATATCTACGGCCACAACAATT 57.964 39.130 2.53 0.00 0.00 2.32
611 612 7.449086 ACCTAGAGGAAAAAGGAGATATCTACG 59.551 40.741 9.38 0.00 38.94 3.51
616 617 6.903534 TGTGACCTAGAGGAAAAAGGAGATAT 59.096 38.462 1.60 0.00 38.94 1.63
618 619 5.094387 TGTGACCTAGAGGAAAAAGGAGAT 58.906 41.667 1.60 0.00 38.94 2.75
619 620 4.489737 TGTGACCTAGAGGAAAAAGGAGA 58.510 43.478 1.60 0.00 38.94 3.71
620 621 4.891992 TGTGACCTAGAGGAAAAAGGAG 57.108 45.455 1.60 0.00 38.94 3.69
629 632 1.269309 GCTACGCATGTGACCTAGAGG 60.269 57.143 14.43 0.00 42.17 3.69
659 662 1.909986 GGAGGATTATACAGGAGGCCC 59.090 57.143 0.00 0.00 0.00 5.80
660 663 2.621070 TGGAGGATTATACAGGAGGCC 58.379 52.381 0.00 0.00 0.00 5.19
661 664 4.583871 CATTGGAGGATTATACAGGAGGC 58.416 47.826 0.00 0.00 0.00 4.70
662 665 4.583871 GCATTGGAGGATTATACAGGAGG 58.416 47.826 0.00 0.00 0.00 4.30
663 666 4.021104 TCGCATTGGAGGATTATACAGGAG 60.021 45.833 0.00 0.00 0.00 3.69
664 667 3.901222 TCGCATTGGAGGATTATACAGGA 59.099 43.478 0.00 0.00 0.00 3.86
665 668 4.248859 CTCGCATTGGAGGATTATACAGG 58.751 47.826 0.00 0.00 0.00 4.00
666 669 3.681897 GCTCGCATTGGAGGATTATACAG 59.318 47.826 4.88 0.00 34.56 2.74
667 670 3.664107 GCTCGCATTGGAGGATTATACA 58.336 45.455 4.88 0.00 34.56 2.29
730 733 0.106708 CCGCTAGCCTGCTTTGGATA 59.893 55.000 9.66 0.00 0.00 2.59
794 797 2.674220 GGGAGTTGGGAGGGAGCTG 61.674 68.421 0.00 0.00 0.00 4.24
824 827 3.403057 CTCAACACGCGGTGGTCG 61.403 66.667 12.47 0.00 37.94 4.79
825 828 2.758770 TAGCTCAACACGCGGTGGTC 62.759 60.000 12.47 1.47 37.94 4.02
826 829 2.372040 TTAGCTCAACACGCGGTGGT 62.372 55.000 12.47 1.53 37.94 4.16
827 830 1.225376 TTTAGCTCAACACGCGGTGG 61.225 55.000 12.47 3.09 37.94 4.61
828 831 0.584396 TTTTAGCTCAACACGCGGTG 59.416 50.000 12.47 9.20 39.75 4.94
829 832 1.301423 TTTTTAGCTCAACACGCGGT 58.699 45.000 12.47 2.05 0.00 5.68
830 833 2.505866 GATTTTTAGCTCAACACGCGG 58.494 47.619 12.47 1.27 0.00 6.46
831 834 2.505866 GGATTTTTAGCTCAACACGCG 58.494 47.619 3.53 3.53 0.00 6.01
832 835 2.415491 GGGGATTTTTAGCTCAACACGC 60.415 50.000 0.00 0.00 0.00 5.34
833 836 2.163613 GGGGGATTTTTAGCTCAACACG 59.836 50.000 0.00 0.00 0.00 4.49
834 837 3.056821 GTGGGGGATTTTTAGCTCAACAC 60.057 47.826 0.00 0.00 0.00 3.32
912 915 3.902318 GCAGGAAGCAAGGAGAGC 58.098 61.111 0.00 0.00 44.79 4.09
921 924 0.957888 GGTTGGTCTCAGCAGGAAGC 60.958 60.000 0.00 0.00 46.19 3.86
928 931 1.086634 GCGATCTGGTTGGTCTCAGC 61.087 60.000 0.00 0.00 0.00 4.26
936 939 2.892425 GGCGAGGCGATCTGGTTG 60.892 66.667 0.00 0.00 0.00 3.77
989 992 4.442018 GCTCCATCAGCTCAGCTC 57.558 61.111 0.00 0.00 45.83 4.09
1173 1176 2.888863 GTGAGCTCCTGGACGAGG 59.111 66.667 12.15 0.00 44.45 4.63
1417 1429 2.263077 GTAGTCGTAGAGGAACGTCGA 58.737 52.381 0.00 0.00 43.31 4.20
1423 1435 0.035152 TGCGGGTAGTCGTAGAGGAA 60.035 55.000 0.00 0.00 36.95 3.36
1525 1537 0.670162 CATGCAAATAAGGAGCGGGG 59.330 55.000 0.00 0.00 0.00 5.73
1686 1703 4.720046 ACAAGAGAAGGGGAAAGAAGAAC 58.280 43.478 0.00 0.00 0.00 3.01
1709 1726 2.681976 GCATCACTACAGCCTTGTCCAT 60.682 50.000 0.00 0.00 38.76 3.41
1776 1793 3.244526 GGCATGGGAAAAAGGTCAATTGT 60.245 43.478 5.13 0.00 0.00 2.71
1794 1811 2.227194 GAAATAATCGAACCCCGGCAT 58.773 47.619 0.00 0.00 39.14 4.40
1795 1812 1.065345 TGAAATAATCGAACCCCGGCA 60.065 47.619 0.00 0.00 39.14 5.69
1859 1881 1.588824 CCGCTGAGCATGCCAAAGAA 61.589 55.000 15.66 0.00 0.00 2.52
1877 1899 0.541764 TGGTGACCCAGAAATTGCCC 60.542 55.000 0.00 0.00 35.17 5.36
1911 1933 0.541863 AGCTCCCCATACCGAAAGTG 59.458 55.000 0.00 0.00 0.00 3.16
1937 1959 1.798223 GATCAAGTACAGTTGCACGCA 59.202 47.619 0.00 0.00 0.00 5.24
1942 1964 3.012518 AGGCATGATCAAGTACAGTTGC 58.987 45.455 0.00 1.90 0.00 4.17
1978 2001 6.486253 TCAGAAACATGTTCATACTGCTTC 57.514 37.500 12.39 2.26 0.00 3.86
1992 2015 1.156736 CGCGAGGGTTTCAGAAACAT 58.843 50.000 24.37 14.03 43.15 2.71
1996 2019 0.038526 GTCTCGCGAGGGTTTCAGAA 60.039 55.000 33.98 10.31 0.00 3.02
2004 2027 3.062466 TGTCTGGTCTCGCGAGGG 61.062 66.667 33.98 20.99 0.00 4.30
2007 2030 2.667199 TCGTGTCTGGTCTCGCGA 60.667 61.111 9.26 9.26 42.72 5.87
2016 2039 1.069227 TCAGTCGTGTGATCGTGTCTG 60.069 52.381 0.00 0.00 0.00 3.51
2017 2040 1.235724 TCAGTCGTGTGATCGTGTCT 58.764 50.000 0.00 0.00 0.00 3.41
2020 2043 2.124122 TGTTTCAGTCGTGTGATCGTG 58.876 47.619 0.00 0.00 0.00 4.35
2021 2044 2.502213 TGTTTCAGTCGTGTGATCGT 57.498 45.000 0.00 0.00 0.00 3.73
2022 2045 4.389664 AATTGTTTCAGTCGTGTGATCG 57.610 40.909 0.00 0.00 0.00 3.69
2023 2046 7.060600 TCATAATTGTTTCAGTCGTGTGATC 57.939 36.000 0.00 0.00 0.00 2.92
2065 2112 8.870116 GGGGAAATAAAAGGAATGTGCTATATT 58.130 33.333 0.00 0.00 0.00 1.28
2071 2128 5.046663 TGAAGGGGAAATAAAAGGAATGTGC 60.047 40.000 0.00 0.00 0.00 4.57
2082 2139 3.963129 AGACGCAATGAAGGGGAAATAA 58.037 40.909 0.00 0.00 0.00 1.40
2083 2140 3.644966 AGACGCAATGAAGGGGAAATA 57.355 42.857 0.00 0.00 0.00 1.40
2084 2141 2.514458 AGACGCAATGAAGGGGAAAT 57.486 45.000 0.00 0.00 0.00 2.17
2088 2147 1.065418 ACCTAAGACGCAATGAAGGGG 60.065 52.381 0.00 0.00 0.00 4.79
2098 2157 4.985409 CCTATCTTTGATCACCTAAGACGC 59.015 45.833 9.89 0.00 38.93 5.19
2105 2164 4.030913 TCGGTTCCTATCTTTGATCACCT 58.969 43.478 0.00 0.00 0.00 4.00
2123 2182 1.210967 TGTGTTTTCTTGGGACTCGGT 59.789 47.619 0.00 0.00 0.00 4.69
2197 2256 5.766150 TTCTGAAGAATTGCGAAAAAGGA 57.234 34.783 0.00 0.00 0.00 3.36
2198 2257 6.385033 AGATTCTGAAGAATTGCGAAAAAGG 58.615 36.000 6.98 0.00 44.14 3.11
2206 2268 8.885494 ACATCTAGTAGATTCTGAAGAATTGC 57.115 34.615 10.09 2.36 44.14 3.56
2248 2310 7.120716 AGAACCAAAGGACTAGGTTAAAAACA 58.879 34.615 8.52 0.00 45.15 2.83
2256 2318 4.232091 TCAGAAGAACCAAAGGACTAGGT 58.768 43.478 0.00 0.00 37.20 3.08
2313 2375 3.490419 GGTTGATGCAGAAGAATCATGGC 60.490 47.826 0.00 0.00 39.57 4.40
2344 2406 0.679960 AGGCAAAGTATGGAACGCCC 60.680 55.000 0.00 0.00 40.49 6.13
2349 2411 6.478512 AAGAACAAAAGGCAAAGTATGGAA 57.521 33.333 0.00 0.00 0.00 3.53
2356 2418 8.437360 AAGGAATTAAAGAACAAAAGGCAAAG 57.563 30.769 0.00 0.00 0.00 2.77
2367 2429 8.414003 AGTCAAAGTGGAAAGGAATTAAAGAAC 58.586 33.333 0.00 0.00 0.00 3.01
2368 2430 8.533569 AGTCAAAGTGGAAAGGAATTAAAGAA 57.466 30.769 0.00 0.00 0.00 2.52
2369 2431 8.533569 AAGTCAAAGTGGAAAGGAATTAAAGA 57.466 30.769 0.00 0.00 0.00 2.52
2434 2500 1.396301 CCACAGATCGAGCAGAAAAGC 59.604 52.381 2.38 0.00 0.00 3.51
2439 2505 1.478631 ACATCCACAGATCGAGCAGA 58.521 50.000 2.38 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.