Multiple sequence alignment - TraesCS3B01G361200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G361200 chr3B 100.000 2892 0 0 1 2892 572751992 572749101 0.000000e+00 5341
1 TraesCS3B01G361200 chr3B 86.846 707 70 11 2 694 738690396 738689699 0.000000e+00 769
2 TraesCS3B01G361200 chr3A 91.512 1826 104 25 778 2562 575500560 575498745 0.000000e+00 2466
3 TraesCS3B01G361200 chr3A 87.447 701 67 11 2 689 382361730 382362422 0.000000e+00 787
4 TraesCS3B01G361200 chr3D 95.028 1086 38 8 689 1763 437495348 437494268 0.000000e+00 1692
5 TraesCS3B01G361200 chr3D 92.760 663 41 5 1904 2562 437494201 437493542 0.000000e+00 952
6 TraesCS3B01G361200 chr6D 88.968 698 55 9 3 688 351119093 351119780 0.000000e+00 843
7 TraesCS3B01G361200 chr6D 88.360 189 15 2 1652 1840 454001051 454000870 1.350000e-53 220
8 TraesCS3B01G361200 chr5A 88.666 697 61 11 2 688 520119329 520118641 0.000000e+00 833
9 TraesCS3B01G361200 chr2D 88.555 699 56 11 3 688 264815389 264816076 0.000000e+00 826
10 TraesCS3B01G361200 chr6B 87.161 701 70 12 2 690 63738260 63738952 0.000000e+00 778
11 TraesCS3B01G361200 chr1B 87.124 699 71 11 2 689 61316239 61316929 0.000000e+00 774
12 TraesCS3B01G361200 chr4B 87.000 700 71 11 2 688 607354164 607353472 0.000000e+00 771
13 TraesCS3B01G361200 chr7A 87.958 573 59 8 121 688 578980554 578979987 0.000000e+00 667


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G361200 chr3B 572749101 572751992 2891 True 5341 5341 100.000 1 2892 1 chr3B.!!$R1 2891
1 TraesCS3B01G361200 chr3B 738689699 738690396 697 True 769 769 86.846 2 694 1 chr3B.!!$R2 692
2 TraesCS3B01G361200 chr3A 575498745 575500560 1815 True 2466 2466 91.512 778 2562 1 chr3A.!!$R1 1784
3 TraesCS3B01G361200 chr3A 382361730 382362422 692 False 787 787 87.447 2 689 1 chr3A.!!$F1 687
4 TraesCS3B01G361200 chr3D 437493542 437495348 1806 True 1322 1692 93.894 689 2562 2 chr3D.!!$R1 1873
5 TraesCS3B01G361200 chr6D 351119093 351119780 687 False 843 843 88.968 3 688 1 chr6D.!!$F1 685
6 TraesCS3B01G361200 chr5A 520118641 520119329 688 True 833 833 88.666 2 688 1 chr5A.!!$R1 686
7 TraesCS3B01G361200 chr2D 264815389 264816076 687 False 826 826 88.555 3 688 1 chr2D.!!$F1 685
8 TraesCS3B01G361200 chr6B 63738260 63738952 692 False 778 778 87.161 2 690 1 chr6B.!!$F1 688
9 TraesCS3B01G361200 chr1B 61316239 61316929 690 False 774 774 87.124 2 689 1 chr1B.!!$F1 687
10 TraesCS3B01G361200 chr4B 607353472 607354164 692 True 771 771 87.000 2 688 1 chr4B.!!$R1 686
11 TraesCS3B01G361200 chr7A 578979987 578980554 567 True 667 667 87.958 121 688 1 chr7A.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 453 1.04535 AGCAGCGCCAGATCTTAGGA 61.045 55.0 2.29 0.0 0.0 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2111 2182 0.676184 GTCAGAGTCAGCACCAGTCA 59.324 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 132 7.758613 AAATCACGTTTAAAAATGGTTCGTT 57.241 28.000 0.00 0.00 0.00 3.85
175 189 8.215132 GTCACGTTTGAAAATTTGTTTGTGTTA 58.785 29.630 0.00 0.00 31.90 2.41
222 241 7.865707 TGTTTACACTTTTGCAAAACATGTTT 58.134 26.923 28.74 18.13 37.16 2.83
228 248 8.725148 ACACTTTTGCAAAACATGTTTGAATTA 58.275 25.926 23.93 7.91 32.36 1.40
432 453 1.045350 AGCAGCGCCAGATCTTAGGA 61.045 55.000 2.29 0.00 0.00 2.94
752 783 1.522355 CCACCTATCGCAGCTGTGG 60.522 63.158 26.23 14.57 40.39 4.17
762 793 2.093500 TCGCAGCTGTGGAATCAATAGT 60.093 45.455 26.23 0.00 0.00 2.12
1025 1064 2.027929 TGACTCGGCCGGAATAGAAAAA 60.028 45.455 27.83 0.00 0.00 1.94
1026 1065 2.350804 GACTCGGCCGGAATAGAAAAAC 59.649 50.000 27.83 3.96 0.00 2.43
1027 1066 1.669265 CTCGGCCGGAATAGAAAAACC 59.331 52.381 27.83 0.00 0.00 3.27
1031 1070 2.384828 GCCGGAATAGAAAAACCCCAT 58.615 47.619 5.05 0.00 0.00 4.00
1348 1392 2.671682 GGCTCGCCCTTCTCCTTT 59.328 61.111 0.00 0.00 0.00 3.11
1477 1521 2.292323 GGTAGTGAAGGAGGAGGAGGAA 60.292 54.545 0.00 0.00 0.00 3.36
1629 1677 2.434134 CGTTTCTTCTCCGCGACCG 61.434 63.158 8.23 0.00 0.00 4.79
1655 1703 1.474077 AGATTTCAAGGGCGTCAATGC 59.526 47.619 0.00 0.00 0.00 3.56
1764 1818 1.810755 GGAAGTCAACGTTGATTCCCC 59.189 52.381 34.08 28.21 39.73 4.81
1768 1822 2.305927 AGTCAACGTTGATTCCCCTCAT 59.694 45.455 31.81 8.71 39.73 2.90
1772 1826 5.465724 GTCAACGTTGATTCCCCTCATATAC 59.534 44.000 31.81 12.07 39.73 1.47
1790 1845 1.589803 ACACGTAGAACCAAACCTGC 58.410 50.000 0.00 0.00 0.00 4.85
1872 1929 1.003116 GATTCCTTACTGCGCATGCTG 60.003 52.381 12.24 10.56 44.78 4.41
1913 1984 8.265055 TGAAATACTTACTCCCTAAGACCATTG 58.735 37.037 0.00 0.00 36.13 2.82
1915 1986 5.678955 ACTTACTCCCTAAGACCATTGTC 57.321 43.478 0.00 0.00 42.09 3.18
1938 2009 3.619419 GACGGAGGGAGTAGTTAGTTCT 58.381 50.000 0.00 0.00 0.00 3.01
1977 2048 9.917129 ATTTAATTACCGTTTCCCTTTACAAAG 57.083 29.630 0.00 0.00 35.79 2.77
2060 2131 4.950475 TGAACAAAAATCCACACCTGTGTA 59.050 37.500 2.05 0.00 42.83 2.90
2111 2182 0.251832 ACCTCACTCGGTCAGTCCAT 60.252 55.000 0.00 0.00 30.26 3.41
2123 2194 2.764007 AGTCCATGACTGGTGCTGA 58.236 52.632 0.00 0.00 41.76 4.26
2187 2258 0.682852 TTGGTTCCCTGTACCACTCG 59.317 55.000 0.00 0.00 45.00 4.18
2196 2267 2.160205 CTGTACCACTCGTTCTCCTCA 58.840 52.381 0.00 0.00 0.00 3.86
2232 2303 1.883638 GCCTCTGCACCAAAGACATGA 60.884 52.381 0.00 0.00 37.47 3.07
2236 2307 1.542915 CTGCACCAAAGACATGAAGGG 59.457 52.381 0.00 0.00 0.00 3.95
2261 2335 6.757897 TCAAAATTAGCATACAGGTTCCAG 57.242 37.500 0.00 0.00 0.00 3.86
2270 2344 4.737054 CATACAGGTTCCAGATTGTTTGC 58.263 43.478 0.00 0.00 0.00 3.68
2278 2352 5.221244 GGTTCCAGATTGTTTGCTTAACACT 60.221 40.000 4.74 0.69 46.09 3.55
2279 2353 5.689383 TCCAGATTGTTTGCTTAACACTC 57.311 39.130 11.79 11.79 46.09 3.51
2290 2364 7.121463 TGTTTGCTTAACACTCCTTTTGTCTAA 59.879 33.333 1.54 0.00 41.73 2.10
2299 2373 7.565680 ACACTCCTTTTGTCTAATCGGATATT 58.434 34.615 0.00 0.00 0.00 1.28
2324 2399 4.209703 GCAATCCAGTTTTGTCATGTGTTG 59.790 41.667 0.00 0.00 0.00 3.33
2325 2400 5.590145 CAATCCAGTTTTGTCATGTGTTGA 58.410 37.500 0.00 0.00 0.00 3.18
2333 2408 4.915158 TTGTCATGTGTTGAGCAATTCA 57.085 36.364 0.00 0.00 34.17 2.57
2347 2422 2.663119 GCAATTCAGCTAAGCGTTTTGG 59.337 45.455 0.00 0.00 0.00 3.28
2362 2437 3.000925 CGTTTTGGCCGTGTATAGATGAC 59.999 47.826 0.00 0.00 0.00 3.06
2516 2591 4.540359 CATTCACAATGTTGTCCCCATT 57.460 40.909 0.00 0.00 39.91 3.16
2524 2599 7.035004 CACAATGTTGTCCCCATTAAATAGTG 58.965 38.462 0.00 0.00 39.91 2.74
2527 2602 5.882040 TGTTGTCCCCATTAAATAGTGTGA 58.118 37.500 0.00 0.00 0.00 3.58
2531 2606 7.446106 TGTCCCCATTAAATAGTGTGACTAT 57.554 36.000 0.00 0.00 42.86 2.12
2532 2607 7.279615 TGTCCCCATTAAATAGTGTGACTATG 58.720 38.462 0.00 0.00 40.32 2.23
2539 2614 9.373750 CATTAAATAGTGTGACTATGAAATGCG 57.626 33.333 13.20 0.00 40.32 4.73
2540 2615 5.991328 AATAGTGTGACTATGAAATGCGG 57.009 39.130 0.00 0.00 40.32 5.69
2550 2625 5.410067 ACTATGAAATGCGGTTCCAAATTG 58.590 37.500 0.00 0.00 0.00 2.32
2568 2643 3.727419 GCAAATGCACATGAGGGTC 57.273 52.632 0.00 0.00 41.59 4.46
2569 2644 1.180029 GCAAATGCACATGAGGGTCT 58.820 50.000 0.00 0.00 41.59 3.85
2570 2645 2.368439 GCAAATGCACATGAGGGTCTA 58.632 47.619 0.00 0.00 41.59 2.59
2571 2646 2.954318 GCAAATGCACATGAGGGTCTAT 59.046 45.455 0.00 0.00 41.59 1.98
2572 2647 3.382546 GCAAATGCACATGAGGGTCTATT 59.617 43.478 0.00 0.00 41.59 1.73
2573 2648 4.580167 GCAAATGCACATGAGGGTCTATTA 59.420 41.667 0.00 0.00 41.59 0.98
2574 2649 5.278169 GCAAATGCACATGAGGGTCTATTAG 60.278 44.000 0.00 0.00 41.59 1.73
2575 2650 3.475566 TGCACATGAGGGTCTATTAGC 57.524 47.619 0.00 0.00 0.00 3.09
2576 2651 2.104792 TGCACATGAGGGTCTATTAGCC 59.895 50.000 0.00 0.00 46.88 3.93
2585 2660 4.009370 GGGTCTATTAGCCCTGATTGTC 57.991 50.000 13.10 0.00 41.63 3.18
2586 2661 3.391296 GGGTCTATTAGCCCTGATTGTCA 59.609 47.826 13.10 0.00 41.63 3.58
2587 2662 4.381411 GGTCTATTAGCCCTGATTGTCAC 58.619 47.826 0.00 0.00 0.00 3.67
2588 2663 4.141711 GGTCTATTAGCCCTGATTGTCACA 60.142 45.833 0.00 0.00 0.00 3.58
2589 2664 5.455326 GGTCTATTAGCCCTGATTGTCACAT 60.455 44.000 0.00 0.00 0.00 3.21
2590 2665 5.698545 GTCTATTAGCCCTGATTGTCACATC 59.301 44.000 0.00 0.00 0.00 3.06
2591 2666 4.785346 ATTAGCCCTGATTGTCACATCT 57.215 40.909 0.00 0.00 0.00 2.90
2592 2667 4.574674 TTAGCCCTGATTGTCACATCTT 57.425 40.909 0.00 0.00 0.00 2.40
2593 2668 5.692115 TTAGCCCTGATTGTCACATCTTA 57.308 39.130 0.00 0.00 0.00 2.10
2594 2669 4.574674 AGCCCTGATTGTCACATCTTAA 57.425 40.909 0.00 0.00 0.00 1.85
2595 2670 4.922206 AGCCCTGATTGTCACATCTTAAA 58.078 39.130 0.00 0.00 0.00 1.52
2596 2671 5.513233 AGCCCTGATTGTCACATCTTAAAT 58.487 37.500 0.00 0.00 0.00 1.40
2597 2672 6.662755 AGCCCTGATTGTCACATCTTAAATA 58.337 36.000 0.00 0.00 0.00 1.40
2598 2673 6.543831 AGCCCTGATTGTCACATCTTAAATAC 59.456 38.462 0.00 0.00 0.00 1.89
2599 2674 6.511767 GCCCTGATTGTCACATCTTAAATACG 60.512 42.308 0.00 0.00 0.00 3.06
2600 2675 6.761242 CCCTGATTGTCACATCTTAAATACGA 59.239 38.462 0.00 0.00 0.00 3.43
2601 2676 7.442364 CCCTGATTGTCACATCTTAAATACGAT 59.558 37.037 0.00 0.00 0.00 3.73
2602 2677 8.830580 CCTGATTGTCACATCTTAAATACGATT 58.169 33.333 0.00 0.00 0.00 3.34
2604 2679 9.986833 TGATTGTCACATCTTAAATACGATTTG 57.013 29.630 0.00 0.00 0.00 2.32
2605 2680 9.988350 GATTGTCACATCTTAAATACGATTTGT 57.012 29.630 0.00 0.00 0.00 2.83
2610 2685 9.834628 TCACATCTTAAATACGATTTGTTTTCC 57.165 29.630 0.00 0.00 0.00 3.13
2611 2686 9.840427 CACATCTTAAATACGATTTGTTTTCCT 57.160 29.630 0.00 0.00 0.00 3.36
2622 2697 7.936584 ACGATTTGTTTTCCTACTGAAATTCA 58.063 30.769 0.00 0.00 42.38 2.57
2623 2698 7.860872 ACGATTTGTTTTCCTACTGAAATTCAC 59.139 33.333 0.00 0.00 42.38 3.18
2624 2699 7.860373 CGATTTGTTTTCCTACTGAAATTCACA 59.140 33.333 0.00 0.00 42.38 3.58
2625 2700 9.185192 GATTTGTTTTCCTACTGAAATTCACAG 57.815 33.333 9.93 9.93 42.38 3.66
2626 2701 7.873719 TTGTTTTCCTACTGAAATTCACAGA 57.126 32.000 16.09 3.51 42.38 3.41
2627 2702 7.873719 TGTTTTCCTACTGAAATTCACAGAA 57.126 32.000 16.09 0.00 42.38 3.02
2628 2703 8.463930 TGTTTTCCTACTGAAATTCACAGAAT 57.536 30.769 16.09 0.00 42.38 2.40
2629 2704 8.352201 TGTTTTCCTACTGAAATTCACAGAATG 58.648 33.333 16.09 7.78 42.38 2.67
2630 2705 8.567948 GTTTTCCTACTGAAATTCACAGAATGA 58.432 33.333 16.09 8.23 42.38 2.57
2631 2706 7.672983 TTCCTACTGAAATTCACAGAATGAC 57.327 36.000 16.09 0.00 39.69 3.06
2632 2707 6.768483 TCCTACTGAAATTCACAGAATGACA 58.232 36.000 16.09 0.00 39.69 3.58
2633 2708 7.223584 TCCTACTGAAATTCACAGAATGACAA 58.776 34.615 16.09 0.00 39.69 3.18
2634 2709 7.719193 TCCTACTGAAATTCACAGAATGACAAA 59.281 33.333 16.09 0.00 39.69 2.83
2635 2710 8.517878 CCTACTGAAATTCACAGAATGACAAAT 58.482 33.333 16.09 0.00 39.69 2.32
2636 2711 9.338291 CTACTGAAATTCACAGAATGACAAATG 57.662 33.333 16.09 0.00 39.69 2.32
2637 2712 7.944061 ACTGAAATTCACAGAATGACAAATGA 58.056 30.769 16.09 0.00 39.69 2.57
2638 2713 7.864379 ACTGAAATTCACAGAATGACAAATGAC 59.136 33.333 16.09 0.00 39.69 3.06
2639 2714 7.714703 TGAAATTCACAGAATGACAAATGACA 58.285 30.769 0.00 0.00 39.69 3.58
2640 2715 7.863877 TGAAATTCACAGAATGACAAATGACAG 59.136 33.333 0.00 0.00 39.69 3.51
2641 2716 6.889301 ATTCACAGAATGACAAATGACAGT 57.111 33.333 0.00 0.00 39.69 3.55
2642 2717 5.678132 TCACAGAATGACAAATGACAGTG 57.322 39.130 0.00 0.00 39.69 3.66
2643 2718 5.125356 TCACAGAATGACAAATGACAGTGT 58.875 37.500 0.00 0.00 39.69 3.55
2644 2719 5.589855 TCACAGAATGACAAATGACAGTGTT 59.410 36.000 0.00 0.00 39.69 3.32
2645 2720 6.095300 TCACAGAATGACAAATGACAGTGTTT 59.905 34.615 0.00 0.00 39.69 2.83
2646 2721 7.281999 TCACAGAATGACAAATGACAGTGTTTA 59.718 33.333 0.00 0.00 39.69 2.01
2647 2722 7.588854 CACAGAATGACAAATGACAGTGTTTAG 59.411 37.037 0.00 0.00 39.69 1.85
2648 2723 7.080099 CAGAATGACAAATGACAGTGTTTAGG 58.920 38.462 0.00 0.00 39.69 2.69
2649 2724 6.772716 AGAATGACAAATGACAGTGTTTAGGT 59.227 34.615 0.00 0.00 0.00 3.08
2650 2725 5.749596 TGACAAATGACAGTGTTTAGGTG 57.250 39.130 0.00 0.00 0.00 4.00
2651 2726 4.036262 TGACAAATGACAGTGTTTAGGTGC 59.964 41.667 0.00 0.00 0.00 5.01
2652 2727 4.207165 ACAAATGACAGTGTTTAGGTGCT 58.793 39.130 0.00 0.00 0.00 4.40
2653 2728 4.644685 ACAAATGACAGTGTTTAGGTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
2654 2729 5.215160 CAAATGACAGTGTTTAGGTGCTTC 58.785 41.667 0.00 0.00 0.00 3.86
2655 2730 2.846193 TGACAGTGTTTAGGTGCTTCC 58.154 47.619 0.00 0.00 0.00 3.46
2656 2731 2.171659 TGACAGTGTTTAGGTGCTTCCA 59.828 45.455 0.00 0.00 39.02 3.53
2657 2732 3.181445 TGACAGTGTTTAGGTGCTTCCAT 60.181 43.478 0.00 0.00 39.02 3.41
2658 2733 4.041075 TGACAGTGTTTAGGTGCTTCCATA 59.959 41.667 0.00 0.00 39.02 2.74
2659 2734 5.179452 ACAGTGTTTAGGTGCTTCCATAT 57.821 39.130 0.00 0.00 39.02 1.78
2660 2735 5.186198 ACAGTGTTTAGGTGCTTCCATATC 58.814 41.667 0.00 0.00 39.02 1.63
2661 2736 4.271049 CAGTGTTTAGGTGCTTCCATATCG 59.729 45.833 1.79 0.00 39.02 2.92
2662 2737 4.161565 AGTGTTTAGGTGCTTCCATATCGA 59.838 41.667 0.00 0.00 39.02 3.59
2663 2738 5.057149 GTGTTTAGGTGCTTCCATATCGAT 58.943 41.667 2.16 2.16 39.02 3.59
2664 2739 5.050091 GTGTTTAGGTGCTTCCATATCGATG 60.050 44.000 8.54 0.00 39.02 3.84
2665 2740 2.175878 AGGTGCTTCCATATCGATGC 57.824 50.000 8.54 1.82 39.02 3.91
2666 2741 1.696336 AGGTGCTTCCATATCGATGCT 59.304 47.619 8.54 0.00 39.02 3.79
2667 2742 2.899900 AGGTGCTTCCATATCGATGCTA 59.100 45.455 8.54 0.00 39.02 3.49
2668 2743 3.324846 AGGTGCTTCCATATCGATGCTAA 59.675 43.478 8.54 0.00 39.02 3.09
2669 2744 3.433615 GGTGCTTCCATATCGATGCTAAC 59.566 47.826 8.54 0.00 34.79 2.34
2670 2745 4.310769 GTGCTTCCATATCGATGCTAACT 58.689 43.478 8.54 0.00 34.79 2.24
2671 2746 5.470368 GTGCTTCCATATCGATGCTAACTA 58.530 41.667 8.54 0.00 34.79 2.24
2672 2747 5.346281 GTGCTTCCATATCGATGCTAACTAC 59.654 44.000 8.54 0.00 34.79 2.73
2673 2748 5.010617 TGCTTCCATATCGATGCTAACTACA 59.989 40.000 8.54 0.00 34.79 2.74
2674 2749 5.574830 GCTTCCATATCGATGCTAACTACAG 59.425 44.000 8.54 0.00 31.88 2.74
2675 2750 6.570571 GCTTCCATATCGATGCTAACTACAGA 60.571 42.308 8.54 0.00 31.88 3.41
2676 2751 6.502136 TCCATATCGATGCTAACTACAGAG 57.498 41.667 8.54 0.00 0.00 3.35
2677 2752 5.098893 CCATATCGATGCTAACTACAGAGC 58.901 45.833 8.54 0.00 39.25 4.09
2686 2761 6.828502 TGCTAACTACAGAGCATAATTTCG 57.171 37.500 0.00 0.00 43.64 3.46
2687 2762 6.338146 TGCTAACTACAGAGCATAATTTCGT 58.662 36.000 0.00 0.00 43.64 3.85
2688 2763 7.485810 TGCTAACTACAGAGCATAATTTCGTA 58.514 34.615 0.00 0.00 43.64 3.43
2689 2764 7.977293 TGCTAACTACAGAGCATAATTTCGTAA 59.023 33.333 0.00 0.00 43.64 3.18
2690 2765 8.267367 GCTAACTACAGAGCATAATTTCGTAAC 58.733 37.037 0.00 0.00 38.62 2.50
2691 2766 9.517609 CTAACTACAGAGCATAATTTCGTAACT 57.482 33.333 0.00 0.00 0.00 2.24
2692 2767 7.757097 ACTACAGAGCATAATTTCGTAACTG 57.243 36.000 0.00 0.00 0.00 3.16
2693 2768 6.757010 ACTACAGAGCATAATTTCGTAACTGG 59.243 38.462 0.00 0.00 0.00 4.00
2694 2769 5.730550 ACAGAGCATAATTTCGTAACTGGA 58.269 37.500 0.00 0.00 0.00 3.86
2695 2770 5.812642 ACAGAGCATAATTTCGTAACTGGAG 59.187 40.000 0.00 0.00 0.00 3.86
2696 2771 4.811557 AGAGCATAATTTCGTAACTGGAGC 59.188 41.667 0.00 0.00 0.00 4.70
2697 2772 4.770795 AGCATAATTTCGTAACTGGAGCT 58.229 39.130 0.00 0.00 0.00 4.09
2698 2773 4.811557 AGCATAATTTCGTAACTGGAGCTC 59.188 41.667 4.71 4.71 0.00 4.09
2699 2774 4.024809 GCATAATTTCGTAACTGGAGCTCC 60.025 45.833 26.78 26.78 0.00 4.70
2700 2775 3.983044 AATTTCGTAACTGGAGCTCCT 57.017 42.857 32.28 16.00 36.82 3.69
2701 2776 2.743636 TTTCGTAACTGGAGCTCCTG 57.256 50.000 31.73 31.73 40.37 3.86
2702 2777 1.919240 TTCGTAACTGGAGCTCCTGA 58.081 50.000 37.73 19.46 38.22 3.86
2703 2778 1.919240 TCGTAACTGGAGCTCCTGAA 58.081 50.000 37.73 24.80 38.22 3.02
2704 2779 2.244695 TCGTAACTGGAGCTCCTGAAA 58.755 47.619 37.73 24.50 38.22 2.69
2705 2780 2.631062 TCGTAACTGGAGCTCCTGAAAA 59.369 45.455 37.73 22.39 38.22 2.29
2706 2781 2.996621 CGTAACTGGAGCTCCTGAAAAG 59.003 50.000 37.73 26.28 38.22 2.27
2707 2782 3.306088 CGTAACTGGAGCTCCTGAAAAGA 60.306 47.826 37.73 15.59 38.22 2.52
2708 2783 2.849294 ACTGGAGCTCCTGAAAAGAC 57.151 50.000 37.73 9.96 38.22 3.01
2709 2784 2.334023 ACTGGAGCTCCTGAAAAGACT 58.666 47.619 37.73 16.79 38.22 3.24
2710 2785 2.301583 ACTGGAGCTCCTGAAAAGACTC 59.698 50.000 37.73 8.74 38.22 3.36
2711 2786 1.625818 TGGAGCTCCTGAAAAGACTCC 59.374 52.381 32.28 3.45 43.26 3.85
2712 2787 1.905894 GGAGCTCCTGAAAAGACTCCT 59.094 52.381 26.25 0.00 40.45 3.69
2713 2788 2.093711 GGAGCTCCTGAAAAGACTCCTC 60.094 54.545 26.25 0.00 40.45 3.71
2714 2789 2.831526 GAGCTCCTGAAAAGACTCCTCT 59.168 50.000 0.87 0.00 0.00 3.69
2715 2790 4.020543 GAGCTCCTGAAAAGACTCCTCTA 58.979 47.826 0.87 0.00 0.00 2.43
2716 2791 4.421131 AGCTCCTGAAAAGACTCCTCTAA 58.579 43.478 0.00 0.00 0.00 2.10
2717 2792 4.221924 AGCTCCTGAAAAGACTCCTCTAAC 59.778 45.833 0.00 0.00 0.00 2.34
2718 2793 4.621983 GCTCCTGAAAAGACTCCTCTAACC 60.622 50.000 0.00 0.00 0.00 2.85
2719 2794 3.510360 TCCTGAAAAGACTCCTCTAACCG 59.490 47.826 0.00 0.00 0.00 4.44
2720 2795 3.510360 CCTGAAAAGACTCCTCTAACCGA 59.490 47.826 0.00 0.00 0.00 4.69
2721 2796 4.487019 CTGAAAAGACTCCTCTAACCGAC 58.513 47.826 0.00 0.00 0.00 4.79
2722 2797 3.257624 TGAAAAGACTCCTCTAACCGACC 59.742 47.826 0.00 0.00 0.00 4.79
2723 2798 1.849977 AAGACTCCTCTAACCGACCC 58.150 55.000 0.00 0.00 0.00 4.46
2724 2799 0.702902 AGACTCCTCTAACCGACCCA 59.297 55.000 0.00 0.00 0.00 4.51
2725 2800 1.076677 AGACTCCTCTAACCGACCCAA 59.923 52.381 0.00 0.00 0.00 4.12
2726 2801 1.477295 GACTCCTCTAACCGACCCAAG 59.523 57.143 0.00 0.00 0.00 3.61
2727 2802 1.076677 ACTCCTCTAACCGACCCAAGA 59.923 52.381 0.00 0.00 0.00 3.02
2728 2803 1.751924 CTCCTCTAACCGACCCAAGAG 59.248 57.143 0.00 0.00 36.13 2.85
2729 2804 1.076677 TCCTCTAACCGACCCAAGAGT 59.923 52.381 0.00 0.00 34.86 3.24
2730 2805 2.309755 TCCTCTAACCGACCCAAGAGTA 59.690 50.000 0.00 0.00 34.86 2.59
2731 2806 3.094572 CCTCTAACCGACCCAAGAGTAA 58.905 50.000 0.00 0.00 34.86 2.24
2732 2807 3.130693 CCTCTAACCGACCCAAGAGTAAG 59.869 52.174 0.00 0.00 34.86 2.34
2733 2808 3.094572 TCTAACCGACCCAAGAGTAAGG 58.905 50.000 0.00 0.00 0.00 2.69
2734 2809 0.323957 AACCGACCCAAGAGTAAGGC 59.676 55.000 0.00 0.00 0.00 4.35
2735 2810 0.834687 ACCGACCCAAGAGTAAGGCA 60.835 55.000 0.00 0.00 0.00 4.75
2736 2811 0.323629 CCGACCCAAGAGTAAGGCAA 59.676 55.000 0.00 0.00 0.00 4.52
2737 2812 1.676014 CCGACCCAAGAGTAAGGCAAG 60.676 57.143 0.00 0.00 0.00 4.01
2738 2813 1.676014 CGACCCAAGAGTAAGGCAAGG 60.676 57.143 0.00 0.00 0.00 3.61
2739 2814 1.351350 GACCCAAGAGTAAGGCAAGGT 59.649 52.381 0.00 0.00 0.00 3.50
2740 2815 1.073923 ACCCAAGAGTAAGGCAAGGTG 59.926 52.381 0.00 0.00 0.00 4.00
2741 2816 1.073923 CCCAAGAGTAAGGCAAGGTGT 59.926 52.381 0.00 0.00 0.00 4.16
2742 2817 2.304761 CCCAAGAGTAAGGCAAGGTGTA 59.695 50.000 0.00 0.00 0.00 2.90
2743 2818 3.244770 CCCAAGAGTAAGGCAAGGTGTAA 60.245 47.826 0.00 0.00 0.00 2.41
2744 2819 4.567747 CCCAAGAGTAAGGCAAGGTGTAAT 60.568 45.833 0.00 0.00 0.00 1.89
2745 2820 4.396166 CCAAGAGTAAGGCAAGGTGTAATG 59.604 45.833 0.00 0.00 0.00 1.90
2746 2821 4.910458 AGAGTAAGGCAAGGTGTAATGT 57.090 40.909 0.00 0.00 0.00 2.71
2747 2822 5.242795 AGAGTAAGGCAAGGTGTAATGTT 57.757 39.130 0.00 0.00 0.00 2.71
2748 2823 5.246307 AGAGTAAGGCAAGGTGTAATGTTC 58.754 41.667 0.00 0.00 0.00 3.18
2749 2824 5.013183 AGAGTAAGGCAAGGTGTAATGTTCT 59.987 40.000 0.00 0.00 0.00 3.01
2750 2825 5.003804 AGTAAGGCAAGGTGTAATGTTCTG 58.996 41.667 0.00 0.00 0.00 3.02
2751 2826 3.788227 AGGCAAGGTGTAATGTTCTGA 57.212 42.857 0.00 0.00 0.00 3.27
2752 2827 4.098914 AGGCAAGGTGTAATGTTCTGAA 57.901 40.909 0.00 0.00 0.00 3.02
2753 2828 4.074970 AGGCAAGGTGTAATGTTCTGAAG 58.925 43.478 0.00 0.00 0.00 3.02
2754 2829 3.191371 GGCAAGGTGTAATGTTCTGAAGG 59.809 47.826 0.00 0.00 0.00 3.46
2755 2830 4.072131 GCAAGGTGTAATGTTCTGAAGGA 58.928 43.478 0.00 0.00 0.00 3.36
2756 2831 4.518970 GCAAGGTGTAATGTTCTGAAGGAA 59.481 41.667 0.00 0.00 0.00 3.36
2757 2832 5.335191 GCAAGGTGTAATGTTCTGAAGGAAG 60.335 44.000 0.00 0.00 34.23 3.46
2758 2833 4.327680 AGGTGTAATGTTCTGAAGGAAGC 58.672 43.478 0.00 0.00 34.23 3.86
2759 2834 3.440522 GGTGTAATGTTCTGAAGGAAGCC 59.559 47.826 0.00 0.00 34.23 4.35
2760 2835 4.072131 GTGTAATGTTCTGAAGGAAGCCA 58.928 43.478 0.00 0.00 34.23 4.75
2761 2836 4.518970 GTGTAATGTTCTGAAGGAAGCCAA 59.481 41.667 0.00 0.00 34.23 4.52
2762 2837 5.009610 GTGTAATGTTCTGAAGGAAGCCAAA 59.990 40.000 0.00 0.00 34.23 3.28
2763 2838 5.774690 TGTAATGTTCTGAAGGAAGCCAAAT 59.225 36.000 0.00 0.00 34.23 2.32
2764 2839 6.945435 TGTAATGTTCTGAAGGAAGCCAAATA 59.055 34.615 0.00 0.00 34.23 1.40
2765 2840 7.615365 TGTAATGTTCTGAAGGAAGCCAAATAT 59.385 33.333 0.00 0.00 34.23 1.28
2766 2841 9.120538 GTAATGTTCTGAAGGAAGCCAAATATA 57.879 33.333 0.00 0.00 34.23 0.86
2767 2842 8.593945 AATGTTCTGAAGGAAGCCAAATATAA 57.406 30.769 0.00 0.00 34.23 0.98
2768 2843 8.593945 ATGTTCTGAAGGAAGCCAAATATAAA 57.406 30.769 0.00 0.00 34.23 1.40
2769 2844 7.826690 TGTTCTGAAGGAAGCCAAATATAAAC 58.173 34.615 0.00 0.00 34.23 2.01
2770 2845 7.669722 TGTTCTGAAGGAAGCCAAATATAAACT 59.330 33.333 0.00 0.00 34.23 2.66
2771 2846 7.630242 TCTGAAGGAAGCCAAATATAAACTG 57.370 36.000 0.00 0.00 0.00 3.16
2772 2847 7.402054 TCTGAAGGAAGCCAAATATAAACTGA 58.598 34.615 0.00 0.00 0.00 3.41
2773 2848 7.554118 TCTGAAGGAAGCCAAATATAAACTGAG 59.446 37.037 0.00 0.00 0.00 3.35
2774 2849 6.603201 TGAAGGAAGCCAAATATAAACTGAGG 59.397 38.462 0.00 0.00 0.00 3.86
2775 2850 5.449553 AGGAAGCCAAATATAAACTGAGGG 58.550 41.667 0.00 0.00 0.00 4.30
2776 2851 5.193728 AGGAAGCCAAATATAAACTGAGGGA 59.806 40.000 0.00 0.00 0.00 4.20
2777 2852 5.891551 GGAAGCCAAATATAAACTGAGGGAA 59.108 40.000 0.00 0.00 0.00 3.97
2778 2853 6.039829 GGAAGCCAAATATAAACTGAGGGAAG 59.960 42.308 0.00 0.00 0.00 3.46
2779 2854 6.327386 AGCCAAATATAAACTGAGGGAAGA 57.673 37.500 0.00 0.00 0.00 2.87
2780 2855 6.360618 AGCCAAATATAAACTGAGGGAAGAG 58.639 40.000 0.00 0.00 0.00 2.85
2781 2856 6.158695 AGCCAAATATAAACTGAGGGAAGAGA 59.841 38.462 0.00 0.00 0.00 3.10
2782 2857 6.484977 GCCAAATATAAACTGAGGGAAGAGAG 59.515 42.308 0.00 0.00 0.00 3.20
2783 2858 6.995091 CCAAATATAAACTGAGGGAAGAGAGG 59.005 42.308 0.00 0.00 0.00 3.69
2784 2859 7.147479 CCAAATATAAACTGAGGGAAGAGAGGA 60.147 40.741 0.00 0.00 0.00 3.71
2785 2860 6.987403 ATATAAACTGAGGGAAGAGAGGAC 57.013 41.667 0.00 0.00 0.00 3.85
2786 2861 3.268034 AAACTGAGGGAAGAGAGGACT 57.732 47.619 0.00 0.00 0.00 3.85
2787 2862 4.405756 AAACTGAGGGAAGAGAGGACTA 57.594 45.455 0.00 0.00 0.00 2.59
2788 2863 4.405756 AACTGAGGGAAGAGAGGACTAA 57.594 45.455 0.00 0.00 0.00 2.24
2789 2864 4.618378 ACTGAGGGAAGAGAGGACTAAT 57.382 45.455 0.00 0.00 0.00 1.73
2790 2865 5.735733 ACTGAGGGAAGAGAGGACTAATA 57.264 43.478 0.00 0.00 0.00 0.98
2791 2866 6.288096 ACTGAGGGAAGAGAGGACTAATAT 57.712 41.667 0.00 0.00 0.00 1.28
2792 2867 6.074648 ACTGAGGGAAGAGAGGACTAATATG 58.925 44.000 0.00 0.00 0.00 1.78
2793 2868 6.126038 ACTGAGGGAAGAGAGGACTAATATGA 60.126 42.308 0.00 0.00 0.00 2.15
2794 2869 6.868826 TGAGGGAAGAGAGGACTAATATGAT 58.131 40.000 0.00 0.00 0.00 2.45
2795 2870 6.723515 TGAGGGAAGAGAGGACTAATATGATG 59.276 42.308 0.00 0.00 0.00 3.07
2796 2871 6.022315 AGGGAAGAGAGGACTAATATGATGG 58.978 44.000 0.00 0.00 0.00 3.51
2797 2872 5.782845 GGGAAGAGAGGACTAATATGATGGT 59.217 44.000 0.00 0.00 0.00 3.55
2798 2873 6.295575 GGGAAGAGAGGACTAATATGATGGTG 60.296 46.154 0.00 0.00 0.00 4.17
2799 2874 6.295575 GGAAGAGAGGACTAATATGATGGTGG 60.296 46.154 0.00 0.00 0.00 4.61
2800 2875 5.721225 AGAGAGGACTAATATGATGGTGGT 58.279 41.667 0.00 0.00 0.00 4.16
2801 2876 6.146760 AGAGAGGACTAATATGATGGTGGTT 58.853 40.000 0.00 0.00 0.00 3.67
2802 2877 7.306013 AGAGAGGACTAATATGATGGTGGTTA 58.694 38.462 0.00 0.00 0.00 2.85
2803 2878 7.789831 AGAGAGGACTAATATGATGGTGGTTAA 59.210 37.037 0.00 0.00 0.00 2.01
2804 2879 7.736893 AGAGGACTAATATGATGGTGGTTAAC 58.263 38.462 0.00 0.00 0.00 2.01
2805 2880 6.522054 AGGACTAATATGATGGTGGTTAACG 58.478 40.000 0.00 0.00 0.00 3.18
2806 2881 5.178809 GGACTAATATGATGGTGGTTAACGC 59.821 44.000 0.00 0.00 0.00 4.84
2807 2882 5.925509 ACTAATATGATGGTGGTTAACGCT 58.074 37.500 0.00 0.00 0.00 5.07
2808 2883 7.058023 ACTAATATGATGGTGGTTAACGCTA 57.942 36.000 0.00 0.00 0.00 4.26
2809 2884 7.152645 ACTAATATGATGGTGGTTAACGCTAG 58.847 38.462 0.00 0.00 0.00 3.42
2810 2885 5.801531 ATATGATGGTGGTTAACGCTAGA 57.198 39.130 0.00 0.00 0.00 2.43
2811 2886 3.965379 TGATGGTGGTTAACGCTAGAA 57.035 42.857 0.00 0.00 0.00 2.10
2812 2887 4.481368 TGATGGTGGTTAACGCTAGAAT 57.519 40.909 0.00 0.00 0.00 2.40
2813 2888 5.601583 TGATGGTGGTTAACGCTAGAATA 57.398 39.130 0.00 0.00 0.00 1.75
2814 2889 5.979993 TGATGGTGGTTAACGCTAGAATAA 58.020 37.500 0.00 0.00 0.00 1.40
2815 2890 6.046593 TGATGGTGGTTAACGCTAGAATAAG 58.953 40.000 0.00 0.00 0.00 1.73
2816 2891 5.664294 TGGTGGTTAACGCTAGAATAAGA 57.336 39.130 0.00 0.00 0.00 2.10
2817 2892 5.413499 TGGTGGTTAACGCTAGAATAAGAC 58.587 41.667 0.00 0.00 0.00 3.01
2818 2893 5.186409 TGGTGGTTAACGCTAGAATAAGACT 59.814 40.000 0.00 0.00 0.00 3.24
2819 2894 6.377996 TGGTGGTTAACGCTAGAATAAGACTA 59.622 38.462 0.00 0.00 0.00 2.59
2820 2895 6.694844 GGTGGTTAACGCTAGAATAAGACTAC 59.305 42.308 0.00 0.00 0.00 2.73
2821 2896 7.416101 GGTGGTTAACGCTAGAATAAGACTACT 60.416 40.741 0.00 0.00 0.00 2.57
2822 2897 7.972832 GTGGTTAACGCTAGAATAAGACTACTT 59.027 37.037 0.00 0.00 39.81 2.24
2823 2898 8.526147 TGGTTAACGCTAGAATAAGACTACTTT 58.474 33.333 0.00 0.00 37.53 2.66
2824 2899 9.018716 GGTTAACGCTAGAATAAGACTACTTTC 57.981 37.037 0.00 0.00 37.53 2.62
2825 2900 8.732227 GTTAACGCTAGAATAAGACTACTTTCG 58.268 37.037 0.00 0.00 37.53 3.46
2826 2901 6.674694 ACGCTAGAATAAGACTACTTTCGA 57.325 37.500 0.00 0.00 37.53 3.71
2827 2902 7.081526 ACGCTAGAATAAGACTACTTTCGAA 57.918 36.000 0.00 0.00 37.53 3.71
2828 2903 7.705214 ACGCTAGAATAAGACTACTTTCGAAT 58.295 34.615 0.00 0.00 37.53 3.34
2829 2904 8.834465 ACGCTAGAATAAGACTACTTTCGAATA 58.166 33.333 0.00 0.00 37.53 1.75
2830 2905 9.661187 CGCTAGAATAAGACTACTTTCGAATAA 57.339 33.333 0.00 0.00 37.53 1.40
2836 2911 9.886132 AATAAGACTACTTTCGAATAACCATGT 57.114 29.630 0.00 0.00 37.53 3.21
2837 2912 9.886132 ATAAGACTACTTTCGAATAACCATGTT 57.114 29.630 0.00 0.00 37.53 2.71
2838 2913 7.829378 AGACTACTTTCGAATAACCATGTTC 57.171 36.000 0.00 0.00 0.00 3.18
2839 2914 7.612677 AGACTACTTTCGAATAACCATGTTCT 58.387 34.615 0.00 0.00 0.00 3.01
2840 2915 8.095169 AGACTACTTTCGAATAACCATGTTCTT 58.905 33.333 0.00 0.00 0.00 2.52
2841 2916 8.252964 ACTACTTTCGAATAACCATGTTCTTC 57.747 34.615 0.00 0.00 0.00 2.87
2842 2917 7.876068 ACTACTTTCGAATAACCATGTTCTTCA 59.124 33.333 0.00 0.00 0.00 3.02
2843 2918 7.687941 ACTTTCGAATAACCATGTTCTTCAT 57.312 32.000 0.00 0.00 37.22 2.57
2844 2919 8.786826 ACTTTCGAATAACCATGTTCTTCATA 57.213 30.769 0.00 0.00 34.67 2.15
2845 2920 8.883731 ACTTTCGAATAACCATGTTCTTCATAG 58.116 33.333 0.00 0.00 34.67 2.23
2846 2921 8.786826 TTTCGAATAACCATGTTCTTCATAGT 57.213 30.769 0.00 0.00 34.67 2.12
2847 2922 8.786826 TTCGAATAACCATGTTCTTCATAGTT 57.213 30.769 0.00 0.00 40.37 2.24
2848 2923 8.786826 TCGAATAACCATGTTCTTCATAGTTT 57.213 30.769 0.00 0.00 38.75 2.66
2849 2924 8.664798 TCGAATAACCATGTTCTTCATAGTTTG 58.335 33.333 0.00 0.00 38.75 2.93
2850 2925 7.910162 CGAATAACCATGTTCTTCATAGTTTGG 59.090 37.037 0.00 0.00 38.75 3.28
2851 2926 8.650143 AATAACCATGTTCTTCATAGTTTGGT 57.350 30.769 0.00 0.00 38.75 3.67
2852 2927 9.747898 AATAACCATGTTCTTCATAGTTTGGTA 57.252 29.630 0.00 0.00 38.75 3.25
2853 2928 9.747898 ATAACCATGTTCTTCATAGTTTGGTAA 57.252 29.630 0.00 0.00 38.75 2.85
2854 2929 7.687941 ACCATGTTCTTCATAGTTTGGTAAG 57.312 36.000 0.00 0.00 34.67 2.34
2855 2930 7.458397 ACCATGTTCTTCATAGTTTGGTAAGA 58.542 34.615 0.00 0.00 34.67 2.10
2856 2931 7.607991 ACCATGTTCTTCATAGTTTGGTAAGAG 59.392 37.037 0.00 0.00 34.67 2.85
2857 2932 7.824289 CCATGTTCTTCATAGTTTGGTAAGAGA 59.176 37.037 0.00 0.00 34.67 3.10
2858 2933 9.219603 CATGTTCTTCATAGTTTGGTAAGAGAA 57.780 33.333 0.00 0.00 34.67 2.87
2859 2934 9.965902 ATGTTCTTCATAGTTTGGTAAGAGAAT 57.034 29.630 0.00 0.00 34.67 2.40
2864 2939 8.677148 TTCATAGTTTGGTAAGAGAATATGGC 57.323 34.615 0.00 0.00 0.00 4.40
2865 2940 7.224297 TCATAGTTTGGTAAGAGAATATGGCC 58.776 38.462 0.00 0.00 0.00 5.36
2866 2941 5.717119 AGTTTGGTAAGAGAATATGGCCT 57.283 39.130 3.32 0.00 0.00 5.19
2867 2942 5.685728 AGTTTGGTAAGAGAATATGGCCTC 58.314 41.667 3.32 0.00 0.00 4.70
2868 2943 5.430089 AGTTTGGTAAGAGAATATGGCCTCT 59.570 40.000 3.32 0.00 41.17 3.69
2870 2945 7.127339 AGTTTGGTAAGAGAATATGGCCTCTTA 59.873 37.037 3.32 4.97 45.05 2.10
2874 2949 5.816955 AAGAGAATATGGCCTCTTACCTC 57.183 43.478 3.32 3.95 45.05 3.85
2875 2950 4.164204 AGAGAATATGGCCTCTTACCTCC 58.836 47.826 3.32 0.00 36.42 4.30
2876 2951 3.252351 AGAATATGGCCTCTTACCTCCC 58.748 50.000 3.32 0.00 0.00 4.30
2877 2952 3.116159 AGAATATGGCCTCTTACCTCCCT 60.116 47.826 3.32 0.00 0.00 4.20
2878 2953 2.103153 TATGGCCTCTTACCTCCCTG 57.897 55.000 3.32 0.00 0.00 4.45
2879 2954 0.343372 ATGGCCTCTTACCTCCCTGA 59.657 55.000 3.32 0.00 0.00 3.86
2880 2955 0.617820 TGGCCTCTTACCTCCCTGAC 60.618 60.000 3.32 0.00 0.00 3.51
2881 2956 0.617820 GGCCTCTTACCTCCCTGACA 60.618 60.000 0.00 0.00 0.00 3.58
2882 2957 1.501582 GCCTCTTACCTCCCTGACAT 58.498 55.000 0.00 0.00 0.00 3.06
2883 2958 2.679082 GCCTCTTACCTCCCTGACATA 58.321 52.381 0.00 0.00 0.00 2.29
2884 2959 3.039011 GCCTCTTACCTCCCTGACATAA 58.961 50.000 0.00 0.00 0.00 1.90
2885 2960 3.454812 GCCTCTTACCTCCCTGACATAAA 59.545 47.826 0.00 0.00 0.00 1.40
2886 2961 4.080526 GCCTCTTACCTCCCTGACATAAAA 60.081 45.833 0.00 0.00 0.00 1.52
2887 2962 5.572885 GCCTCTTACCTCCCTGACATAAAAA 60.573 44.000 0.00 0.00 0.00 1.94
2888 2963 5.880887 CCTCTTACCTCCCTGACATAAAAAC 59.119 44.000 0.00 0.00 0.00 2.43
2889 2964 6.442541 TCTTACCTCCCTGACATAAAAACA 57.557 37.500 0.00 0.00 0.00 2.83
2890 2965 6.472887 TCTTACCTCCCTGACATAAAAACAG 58.527 40.000 0.00 0.00 0.00 3.16
2891 2966 3.421844 ACCTCCCTGACATAAAAACAGC 58.578 45.455 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 205 6.897663 GCAAAAGTGTAAACAAATTTCGGAAC 59.102 34.615 0.00 0.00 0.00 3.62
191 210 9.387123 TGTTTTGCAAAAGTGTAAACAAATTTC 57.613 25.926 24.46 7.80 38.81 2.17
320 341 6.703607 CCAGAGTAATTAGCATCGAGATTTGT 59.296 38.462 0.00 0.00 0.00 2.83
322 343 6.821388 ACCAGAGTAATTAGCATCGAGATTT 58.179 36.000 0.00 0.00 0.00 2.17
356 377 7.094634 ACTGTTAGTGATAAATGAAAGCAGTGG 60.095 37.037 0.00 0.00 32.11 4.00
358 379 7.986085 ACTGTTAGTGATAAATGAAAGCAGT 57.014 32.000 0.00 0.00 0.00 4.40
405 426 0.390340 TCTGGCGCTGCTAAACTCAG 60.390 55.000 7.64 2.40 34.79 3.35
432 453 8.613922 AAGAAAAATACTCATGGGGAATCAAT 57.386 30.769 0.00 0.00 0.00 2.57
568 594 9.670442 ATCCTAGTCTATATTAAACCTTGGACA 57.330 33.333 0.00 0.00 0.00 4.02
589 615 5.009710 CAGCACACCGAACTATCTAATCCTA 59.990 44.000 0.00 0.00 0.00 2.94
590 616 3.961408 AGCACACCGAACTATCTAATCCT 59.039 43.478 0.00 0.00 0.00 3.24
752 783 6.621316 TCTACTCGTCCTCACTATTGATTC 57.379 41.667 0.00 0.00 0.00 2.52
762 793 4.498894 TGTTAGGATCTACTCGTCCTCA 57.501 45.455 0.00 0.00 43.63 3.86
916 948 1.898330 TAACATGCGAGCCCTGCTGA 61.898 55.000 0.00 0.00 39.88 4.26
1025 1064 2.043772 TGGGATCGGGAATGGGGT 59.956 61.111 0.00 0.00 0.00 4.95
1026 1065 2.515901 GTGGGATCGGGAATGGGG 59.484 66.667 0.00 0.00 0.00 4.96
1027 1066 2.515901 GGTGGGATCGGGAATGGG 59.484 66.667 0.00 0.00 0.00 4.00
1337 1381 1.301677 GCGTGCTGAAAGGAGAAGGG 61.302 60.000 0.00 0.00 31.73 3.95
1459 1503 1.719378 TCTTCCTCCTCCTCCTTCACT 59.281 52.381 0.00 0.00 0.00 3.41
1629 1677 4.000988 TGACGCCCTTGAAATCTAAACTC 58.999 43.478 0.00 0.00 0.00 3.01
1655 1703 6.831353 TGATCTAGTAGGAAGGAAGAGAACAG 59.169 42.308 0.00 0.00 0.00 3.16
1764 1818 6.475727 CAGGTTTGGTTCTACGTGTATATGAG 59.524 42.308 0.00 0.00 0.00 2.90
1768 1822 4.221262 AGCAGGTTTGGTTCTACGTGTATA 59.779 41.667 0.00 0.00 33.83 1.47
1772 1826 1.531149 CAGCAGGTTTGGTTCTACGTG 59.469 52.381 0.00 0.00 31.36 4.49
1818 1873 4.070716 CAGATCACTTGGCAAGAAGAGTT 58.929 43.478 32.50 15.28 0.00 3.01
1896 1954 3.028850 CCGACAATGGTCTTAGGGAGTA 58.971 50.000 0.00 0.00 42.05 2.59
1897 1955 1.831736 CCGACAATGGTCTTAGGGAGT 59.168 52.381 0.00 0.00 42.05 3.85
1913 1984 0.679321 AACTACTCCCTCCGTCCGAC 60.679 60.000 0.00 0.00 0.00 4.79
1915 1986 1.307097 CTAACTACTCCCTCCGTCCG 58.693 60.000 0.00 0.00 0.00 4.79
2060 2131 1.064758 TCTCAGTTTTGTGGCTGTGGT 60.065 47.619 0.00 0.00 34.57 4.16
2111 2182 0.676184 GTCAGAGTCAGCACCAGTCA 59.324 55.000 0.00 0.00 0.00 3.41
2123 2194 4.754114 GCAAAGAAGATTCACTGTCAGAGT 59.246 41.667 6.91 0.00 34.02 3.24
2196 2267 1.080434 GGCTCGCTTTCTCACTCGT 60.080 57.895 0.00 0.00 0.00 4.18
2232 2303 6.016555 ACCTGTATGCTAATTTTGAACCCTT 58.983 36.000 0.00 0.00 0.00 3.95
2236 2307 6.919721 TGGAACCTGTATGCTAATTTTGAAC 58.080 36.000 0.00 0.00 0.00 3.18
2270 2344 6.872020 TCCGATTAGACAAAAGGAGTGTTAAG 59.128 38.462 0.00 0.00 0.00 1.85
2278 2352 7.732025 TGCTAATATCCGATTAGACAAAAGGA 58.268 34.615 8.21 0.00 34.43 3.36
2279 2353 7.962964 TGCTAATATCCGATTAGACAAAAGG 57.037 36.000 8.21 0.00 34.43 3.11
2290 2364 6.772716 ACAAAACTGGATTGCTAATATCCGAT 59.227 34.615 0.00 0.00 43.72 4.18
2299 2373 4.826733 ACACATGACAAAACTGGATTGCTA 59.173 37.500 0.00 0.00 0.00 3.49
2324 2399 3.477899 AAACGCTTAGCTGAATTGCTC 57.522 42.857 1.76 0.00 42.97 4.26
2325 2400 3.568538 CAAAACGCTTAGCTGAATTGCT 58.431 40.909 1.76 0.00 46.11 3.91
2333 2408 1.599797 ACGGCCAAAACGCTTAGCT 60.600 52.632 2.24 0.00 34.00 3.32
2347 2422 6.838198 TTATGTTTGTCATCTATACACGGC 57.162 37.500 0.00 0.00 37.91 5.68
2393 2468 4.218417 AGGATGTTTTTGTGTCAGGTATGC 59.782 41.667 0.00 0.00 0.00 3.14
2475 2550 1.337703 GTTTCATGCAGTGGAAGCACA 59.662 47.619 0.00 0.00 45.95 4.57
2513 2588 9.373750 CGCATTTCATAGTCACACTATTTAATG 57.626 33.333 15.43 15.43 39.26 1.90
2516 2591 7.045416 ACCGCATTTCATAGTCACACTATTTA 58.955 34.615 0.00 0.00 39.26 1.40
2524 2599 3.006940 TGGAACCGCATTTCATAGTCAC 58.993 45.455 0.00 0.00 0.00 3.67
2527 2602 5.410067 CAATTTGGAACCGCATTTCATAGT 58.590 37.500 0.00 0.00 0.00 2.12
2531 2606 2.224137 TGCAATTTGGAACCGCATTTCA 60.224 40.909 0.00 0.00 0.00 2.69
2532 2607 2.411904 TGCAATTTGGAACCGCATTTC 58.588 42.857 0.00 0.00 0.00 2.17
2550 2625 1.180029 AGACCCTCATGTGCATTTGC 58.820 50.000 0.00 0.00 42.50 3.68
2565 2640 4.141711 TGTGACAATCAGGGCTAATAGACC 60.142 45.833 3.34 3.34 46.64 3.85
2566 2641 5.023533 TGTGACAATCAGGGCTAATAGAC 57.976 43.478 0.00 0.00 0.00 2.59
2567 2642 5.604231 AGATGTGACAATCAGGGCTAATAGA 59.396 40.000 0.00 0.00 0.00 1.98
2568 2643 5.862845 AGATGTGACAATCAGGGCTAATAG 58.137 41.667 0.00 0.00 0.00 1.73
2569 2644 5.894298 AGATGTGACAATCAGGGCTAATA 57.106 39.130 0.00 0.00 0.00 0.98
2570 2645 4.785346 AGATGTGACAATCAGGGCTAAT 57.215 40.909 0.00 0.00 0.00 1.73
2571 2646 4.574674 AAGATGTGACAATCAGGGCTAA 57.425 40.909 0.00 0.00 0.00 3.09
2572 2647 5.692115 TTAAGATGTGACAATCAGGGCTA 57.308 39.130 0.00 0.00 0.00 3.93
2573 2648 4.574674 TTAAGATGTGACAATCAGGGCT 57.425 40.909 0.00 0.00 0.00 5.19
2574 2649 5.841957 ATTTAAGATGTGACAATCAGGGC 57.158 39.130 0.00 0.00 0.00 5.19
2575 2650 6.761242 TCGTATTTAAGATGTGACAATCAGGG 59.239 38.462 0.00 0.00 0.00 4.45
2576 2651 7.770801 TCGTATTTAAGATGTGACAATCAGG 57.229 36.000 0.00 0.00 0.00 3.86
2578 2653 9.986833 CAAATCGTATTTAAGATGTGACAATCA 57.013 29.630 0.00 0.00 34.79 2.57
2579 2654 9.988350 ACAAATCGTATTTAAGATGTGACAATC 57.012 29.630 9.70 0.00 36.03 2.67
2584 2659 9.834628 GGAAAACAAATCGTATTTAAGATGTGA 57.165 29.630 9.70 0.00 36.03 3.58
2585 2660 9.840427 AGGAAAACAAATCGTATTTAAGATGTG 57.160 29.630 3.13 3.13 37.92 3.21
2607 2682 7.223584 TGTCATTCTGTGAATTTCAGTAGGAA 58.776 34.615 0.00 3.19 38.90 3.36
2608 2683 6.768483 TGTCATTCTGTGAATTTCAGTAGGA 58.232 36.000 0.00 0.00 38.90 2.94
2609 2684 7.439157 TTGTCATTCTGTGAATTTCAGTAGG 57.561 36.000 0.00 4.78 38.90 3.18
2610 2685 9.338291 CATTTGTCATTCTGTGAATTTCAGTAG 57.662 33.333 0.00 2.15 38.90 2.57
2611 2686 9.065798 TCATTTGTCATTCTGTGAATTTCAGTA 57.934 29.630 0.00 3.52 38.90 2.74
2612 2687 7.864379 GTCATTTGTCATTCTGTGAATTTCAGT 59.136 33.333 0.00 0.00 38.90 3.41
2613 2688 7.863877 TGTCATTTGTCATTCTGTGAATTTCAG 59.136 33.333 0.00 5.56 38.90 3.02
2614 2689 7.714703 TGTCATTTGTCATTCTGTGAATTTCA 58.285 30.769 0.00 0.00 38.90 2.69
2615 2690 7.864379 ACTGTCATTTGTCATTCTGTGAATTTC 59.136 33.333 0.00 0.00 38.90 2.17
2616 2691 7.650504 CACTGTCATTTGTCATTCTGTGAATTT 59.349 33.333 0.00 0.00 38.90 1.82
2617 2692 7.143340 CACTGTCATTTGTCATTCTGTGAATT 58.857 34.615 0.00 0.00 38.90 2.17
2618 2693 6.263842 ACACTGTCATTTGTCATTCTGTGAAT 59.736 34.615 0.00 0.00 38.90 2.57
2619 2694 5.589855 ACACTGTCATTTGTCATTCTGTGAA 59.410 36.000 0.00 0.00 38.90 3.18
2620 2695 5.125356 ACACTGTCATTTGTCATTCTGTGA 58.875 37.500 0.00 0.00 0.00 3.58
2621 2696 5.428496 ACACTGTCATTTGTCATTCTGTG 57.572 39.130 0.00 0.00 0.00 3.66
2622 2697 6.455360 AAACACTGTCATTTGTCATTCTGT 57.545 33.333 0.00 0.00 0.00 3.41
2623 2698 7.080099 CCTAAACACTGTCATTTGTCATTCTG 58.920 38.462 0.00 0.00 0.00 3.02
2624 2699 6.772716 ACCTAAACACTGTCATTTGTCATTCT 59.227 34.615 0.00 0.00 0.00 2.40
2625 2700 6.857964 CACCTAAACACTGTCATTTGTCATTC 59.142 38.462 0.00 0.00 0.00 2.67
2626 2701 6.735694 GCACCTAAACACTGTCATTTGTCATT 60.736 38.462 0.00 0.00 0.00 2.57
2627 2702 5.278463 GCACCTAAACACTGTCATTTGTCAT 60.278 40.000 0.00 0.00 0.00 3.06
2628 2703 4.036262 GCACCTAAACACTGTCATTTGTCA 59.964 41.667 0.00 0.00 0.00 3.58
2629 2704 4.275936 AGCACCTAAACACTGTCATTTGTC 59.724 41.667 0.00 0.00 0.00 3.18
2630 2705 4.207165 AGCACCTAAACACTGTCATTTGT 58.793 39.130 0.00 0.00 0.00 2.83
2631 2706 4.836125 AGCACCTAAACACTGTCATTTG 57.164 40.909 0.00 0.00 0.00 2.32
2632 2707 4.278419 GGAAGCACCTAAACACTGTCATTT 59.722 41.667 0.00 0.00 35.41 2.32
2633 2708 3.821033 GGAAGCACCTAAACACTGTCATT 59.179 43.478 0.00 0.00 35.41 2.57
2634 2709 3.181445 TGGAAGCACCTAAACACTGTCAT 60.181 43.478 1.91 0.00 39.86 3.06
2635 2710 2.171659 TGGAAGCACCTAAACACTGTCA 59.828 45.455 1.91 0.00 39.86 3.58
2636 2711 2.846193 TGGAAGCACCTAAACACTGTC 58.154 47.619 1.91 0.00 39.86 3.51
2637 2712 3.508845 ATGGAAGCACCTAAACACTGT 57.491 42.857 1.91 0.00 39.86 3.55
2638 2713 4.271049 CGATATGGAAGCACCTAAACACTG 59.729 45.833 1.91 0.00 39.86 3.66
2639 2714 4.161565 TCGATATGGAAGCACCTAAACACT 59.838 41.667 1.91 0.00 39.86 3.55
2640 2715 4.439057 TCGATATGGAAGCACCTAAACAC 58.561 43.478 1.91 0.00 39.86 3.32
2641 2716 4.746535 TCGATATGGAAGCACCTAAACA 57.253 40.909 1.91 0.00 39.86 2.83
2642 2717 4.083802 GCATCGATATGGAAGCACCTAAAC 60.084 45.833 9.68 0.00 39.86 2.01
2643 2718 4.065088 GCATCGATATGGAAGCACCTAAA 58.935 43.478 9.68 0.00 39.86 1.85
2644 2719 3.324846 AGCATCGATATGGAAGCACCTAA 59.675 43.478 15.78 0.00 39.86 2.69
2645 2720 2.899900 AGCATCGATATGGAAGCACCTA 59.100 45.455 15.78 0.00 39.86 3.08
2646 2721 1.696336 AGCATCGATATGGAAGCACCT 59.304 47.619 15.78 0.00 39.86 4.00
2647 2722 2.175878 AGCATCGATATGGAAGCACC 57.824 50.000 15.78 0.00 33.31 5.01
2648 2723 4.310769 AGTTAGCATCGATATGGAAGCAC 58.689 43.478 15.78 7.33 33.31 4.40
2649 2724 4.607293 AGTTAGCATCGATATGGAAGCA 57.393 40.909 15.78 1.49 33.31 3.91
2650 2725 5.470368 TGTAGTTAGCATCGATATGGAAGC 58.530 41.667 6.82 6.82 33.38 3.86
2651 2726 6.914259 TCTGTAGTTAGCATCGATATGGAAG 58.086 40.000 0.00 0.00 33.38 3.46
2652 2727 6.570571 GCTCTGTAGTTAGCATCGATATGGAA 60.571 42.308 0.00 0.00 38.63 3.53
2653 2728 5.106118 GCTCTGTAGTTAGCATCGATATGGA 60.106 44.000 0.00 0.00 38.63 3.41
2654 2729 5.098893 GCTCTGTAGTTAGCATCGATATGG 58.901 45.833 0.00 0.00 38.63 2.74
2655 2730 5.703876 TGCTCTGTAGTTAGCATCGATATG 58.296 41.667 0.00 0.00 43.56 1.78
2656 2731 5.966742 TGCTCTGTAGTTAGCATCGATAT 57.033 39.130 0.00 0.00 43.56 1.63
2664 2739 6.830114 ACGAAATTATGCTCTGTAGTTAGC 57.170 37.500 0.00 0.00 39.25 3.09
2665 2740 9.517609 AGTTACGAAATTATGCTCTGTAGTTAG 57.482 33.333 0.00 0.00 0.00 2.34
2666 2741 9.297586 CAGTTACGAAATTATGCTCTGTAGTTA 57.702 33.333 0.00 0.00 0.00 2.24
2667 2742 7.277981 CCAGTTACGAAATTATGCTCTGTAGTT 59.722 37.037 0.00 0.00 0.00 2.24
2668 2743 6.757010 CCAGTTACGAAATTATGCTCTGTAGT 59.243 38.462 0.00 0.00 0.00 2.73
2669 2744 6.978659 TCCAGTTACGAAATTATGCTCTGTAG 59.021 38.462 0.00 0.00 0.00 2.74
2670 2745 6.869695 TCCAGTTACGAAATTATGCTCTGTA 58.130 36.000 0.00 0.00 0.00 2.74
2671 2746 5.730550 TCCAGTTACGAAATTATGCTCTGT 58.269 37.500 0.00 0.00 0.00 3.41
2672 2747 5.277058 GCTCCAGTTACGAAATTATGCTCTG 60.277 44.000 0.00 0.00 0.00 3.35
2673 2748 4.811557 GCTCCAGTTACGAAATTATGCTCT 59.188 41.667 0.00 0.00 0.00 4.09
2674 2749 4.811557 AGCTCCAGTTACGAAATTATGCTC 59.188 41.667 0.00 0.00 0.00 4.26
2675 2750 4.770795 AGCTCCAGTTACGAAATTATGCT 58.229 39.130 0.00 0.00 0.00 3.79
2676 2751 4.024809 GGAGCTCCAGTTACGAAATTATGC 60.025 45.833 28.43 0.00 35.64 3.14
2677 2752 5.235186 CAGGAGCTCCAGTTACGAAATTATG 59.765 44.000 33.90 14.36 38.89 1.90
2678 2753 5.128827 TCAGGAGCTCCAGTTACGAAATTAT 59.871 40.000 33.90 5.49 38.89 1.28
2679 2754 4.464951 TCAGGAGCTCCAGTTACGAAATTA 59.535 41.667 33.90 3.61 38.89 1.40
2680 2755 3.260884 TCAGGAGCTCCAGTTACGAAATT 59.739 43.478 33.90 6.20 38.89 1.82
2681 2756 2.832129 TCAGGAGCTCCAGTTACGAAAT 59.168 45.455 33.90 6.77 38.89 2.17
2682 2757 2.244695 TCAGGAGCTCCAGTTACGAAA 58.755 47.619 33.90 5.93 38.89 3.46
2683 2758 1.919240 TCAGGAGCTCCAGTTACGAA 58.081 50.000 33.90 6.71 38.89 3.85
2684 2759 1.919240 TTCAGGAGCTCCAGTTACGA 58.081 50.000 33.90 16.52 38.89 3.43
2685 2760 2.743636 TTTCAGGAGCTCCAGTTACG 57.256 50.000 33.90 14.56 38.89 3.18
2686 2761 3.997681 GTCTTTTCAGGAGCTCCAGTTAC 59.002 47.826 33.90 17.49 38.89 2.50
2687 2762 3.904339 AGTCTTTTCAGGAGCTCCAGTTA 59.096 43.478 33.90 15.84 38.89 2.24
2688 2763 2.708325 AGTCTTTTCAGGAGCTCCAGTT 59.292 45.455 33.90 11.69 38.89 3.16
2689 2764 2.301583 GAGTCTTTTCAGGAGCTCCAGT 59.698 50.000 33.90 14.53 38.89 4.00
2690 2765 2.354604 GGAGTCTTTTCAGGAGCTCCAG 60.355 54.545 33.90 26.54 41.39 3.86
2691 2766 1.625818 GGAGTCTTTTCAGGAGCTCCA 59.374 52.381 33.90 12.52 41.39 3.86
2692 2767 1.905894 AGGAGTCTTTTCAGGAGCTCC 59.094 52.381 26.22 26.22 41.90 4.70
2693 2768 2.831526 AGAGGAGTCTTTTCAGGAGCTC 59.168 50.000 4.71 4.71 0.00 4.09
2694 2769 2.901291 AGAGGAGTCTTTTCAGGAGCT 58.099 47.619 0.00 0.00 0.00 4.09
2695 2770 4.500127 GTTAGAGGAGTCTTTTCAGGAGC 58.500 47.826 0.00 0.00 33.84 4.70
2696 2771 4.381079 CGGTTAGAGGAGTCTTTTCAGGAG 60.381 50.000 0.00 0.00 33.84 3.69
2697 2772 3.510360 CGGTTAGAGGAGTCTTTTCAGGA 59.490 47.826 0.00 0.00 33.84 3.86
2698 2773 3.510360 TCGGTTAGAGGAGTCTTTTCAGG 59.490 47.826 0.00 0.00 33.84 3.86
2699 2774 4.487019 GTCGGTTAGAGGAGTCTTTTCAG 58.513 47.826 0.00 0.00 33.84 3.02
2700 2775 3.257624 GGTCGGTTAGAGGAGTCTTTTCA 59.742 47.826 0.00 0.00 33.84 2.69
2701 2776 3.368220 GGGTCGGTTAGAGGAGTCTTTTC 60.368 52.174 0.00 0.00 33.84 2.29
2702 2777 2.566279 GGGTCGGTTAGAGGAGTCTTTT 59.434 50.000 0.00 0.00 33.84 2.27
2703 2778 2.177734 GGGTCGGTTAGAGGAGTCTTT 58.822 52.381 0.00 0.00 33.84 2.52
2704 2779 1.076677 TGGGTCGGTTAGAGGAGTCTT 59.923 52.381 0.00 0.00 33.84 3.01
2705 2780 0.702902 TGGGTCGGTTAGAGGAGTCT 59.297 55.000 0.00 0.00 36.75 3.24
2706 2781 1.477295 CTTGGGTCGGTTAGAGGAGTC 59.523 57.143 0.00 0.00 0.00 3.36
2707 2782 1.076677 TCTTGGGTCGGTTAGAGGAGT 59.923 52.381 0.00 0.00 0.00 3.85
2708 2783 1.751924 CTCTTGGGTCGGTTAGAGGAG 59.248 57.143 0.00 0.00 32.41 3.69
2709 2784 1.076677 ACTCTTGGGTCGGTTAGAGGA 59.923 52.381 0.00 0.00 38.71 3.71
2710 2785 1.558233 ACTCTTGGGTCGGTTAGAGG 58.442 55.000 0.00 0.00 38.71 3.69
2711 2786 3.130693 CCTTACTCTTGGGTCGGTTAGAG 59.869 52.174 0.00 0.00 39.93 2.43
2712 2787 3.094572 CCTTACTCTTGGGTCGGTTAGA 58.905 50.000 0.00 0.00 0.00 2.10
2713 2788 2.418334 GCCTTACTCTTGGGTCGGTTAG 60.418 54.545 0.00 0.00 0.00 2.34
2714 2789 1.551883 GCCTTACTCTTGGGTCGGTTA 59.448 52.381 0.00 0.00 0.00 2.85
2715 2790 0.323957 GCCTTACTCTTGGGTCGGTT 59.676 55.000 0.00 0.00 0.00 4.44
2716 2791 0.834687 TGCCTTACTCTTGGGTCGGT 60.835 55.000 0.00 0.00 0.00 4.69
2717 2792 0.323629 TTGCCTTACTCTTGGGTCGG 59.676 55.000 0.00 0.00 0.00 4.79
2718 2793 1.676014 CCTTGCCTTACTCTTGGGTCG 60.676 57.143 0.00 0.00 0.00 4.79
2719 2794 1.351350 ACCTTGCCTTACTCTTGGGTC 59.649 52.381 0.00 0.00 0.00 4.46
2720 2795 1.073923 CACCTTGCCTTACTCTTGGGT 59.926 52.381 0.00 0.00 0.00 4.51
2721 2796 1.073923 ACACCTTGCCTTACTCTTGGG 59.926 52.381 0.00 0.00 0.00 4.12
2722 2797 2.568623 ACACCTTGCCTTACTCTTGG 57.431 50.000 0.00 0.00 0.00 3.61
2723 2798 5.003804 ACATTACACCTTGCCTTACTCTTG 58.996 41.667 0.00 0.00 0.00 3.02
2724 2799 5.242795 ACATTACACCTTGCCTTACTCTT 57.757 39.130 0.00 0.00 0.00 2.85
2725 2800 4.910458 ACATTACACCTTGCCTTACTCT 57.090 40.909 0.00 0.00 0.00 3.24
2726 2801 5.122396 CAGAACATTACACCTTGCCTTACTC 59.878 44.000 0.00 0.00 0.00 2.59
2727 2802 5.003804 CAGAACATTACACCTTGCCTTACT 58.996 41.667 0.00 0.00 0.00 2.24
2728 2803 5.001232 TCAGAACATTACACCTTGCCTTAC 58.999 41.667 0.00 0.00 0.00 2.34
2729 2804 5.235850 TCAGAACATTACACCTTGCCTTA 57.764 39.130 0.00 0.00 0.00 2.69
2730 2805 4.098914 TCAGAACATTACACCTTGCCTT 57.901 40.909 0.00 0.00 0.00 4.35
2731 2806 3.788227 TCAGAACATTACACCTTGCCT 57.212 42.857 0.00 0.00 0.00 4.75
2732 2807 3.191371 CCTTCAGAACATTACACCTTGCC 59.809 47.826 0.00 0.00 0.00 4.52
2733 2808 4.072131 TCCTTCAGAACATTACACCTTGC 58.928 43.478 0.00 0.00 0.00 4.01
2734 2809 5.335191 GCTTCCTTCAGAACATTACACCTTG 60.335 44.000 0.00 0.00 0.00 3.61
2735 2810 4.762251 GCTTCCTTCAGAACATTACACCTT 59.238 41.667 0.00 0.00 0.00 3.50
2736 2811 4.327680 GCTTCCTTCAGAACATTACACCT 58.672 43.478 0.00 0.00 0.00 4.00
2737 2812 3.440522 GGCTTCCTTCAGAACATTACACC 59.559 47.826 0.00 0.00 0.00 4.16
2738 2813 4.072131 TGGCTTCCTTCAGAACATTACAC 58.928 43.478 0.00 0.00 0.00 2.90
2739 2814 4.365514 TGGCTTCCTTCAGAACATTACA 57.634 40.909 0.00 0.00 0.00 2.41
2740 2815 5.705609 TTTGGCTTCCTTCAGAACATTAC 57.294 39.130 0.00 0.00 0.00 1.89
2741 2816 9.693739 TTATATTTGGCTTCCTTCAGAACATTA 57.306 29.630 0.00 0.00 0.00 1.90
2742 2817 8.593945 TTATATTTGGCTTCCTTCAGAACATT 57.406 30.769 0.00 0.00 0.00 2.71
2743 2818 8.470002 GTTTATATTTGGCTTCCTTCAGAACAT 58.530 33.333 0.00 0.00 0.00 2.71
2744 2819 7.669722 AGTTTATATTTGGCTTCCTTCAGAACA 59.330 33.333 0.00 0.00 0.00 3.18
2745 2820 7.970614 CAGTTTATATTTGGCTTCCTTCAGAAC 59.029 37.037 0.00 0.00 0.00 3.01
2746 2821 7.888021 TCAGTTTATATTTGGCTTCCTTCAGAA 59.112 33.333 0.00 0.00 0.00 3.02
2747 2822 7.402054 TCAGTTTATATTTGGCTTCCTTCAGA 58.598 34.615 0.00 0.00 0.00 3.27
2748 2823 7.201767 CCTCAGTTTATATTTGGCTTCCTTCAG 60.202 40.741 0.00 0.00 0.00 3.02
2749 2824 6.603201 CCTCAGTTTATATTTGGCTTCCTTCA 59.397 38.462 0.00 0.00 0.00 3.02
2750 2825 6.039829 CCCTCAGTTTATATTTGGCTTCCTTC 59.960 42.308 0.00 0.00 0.00 3.46
2751 2826 5.893824 CCCTCAGTTTATATTTGGCTTCCTT 59.106 40.000 0.00 0.00 0.00 3.36
2752 2827 5.193728 TCCCTCAGTTTATATTTGGCTTCCT 59.806 40.000 0.00 0.00 0.00 3.36
2753 2828 5.445964 TCCCTCAGTTTATATTTGGCTTCC 58.554 41.667 0.00 0.00 0.00 3.46
2754 2829 6.828785 TCTTCCCTCAGTTTATATTTGGCTTC 59.171 38.462 0.00 0.00 0.00 3.86
2755 2830 6.731467 TCTTCCCTCAGTTTATATTTGGCTT 58.269 36.000 0.00 0.00 0.00 4.35
2756 2831 6.158695 TCTCTTCCCTCAGTTTATATTTGGCT 59.841 38.462 0.00 0.00 0.00 4.75
2757 2832 6.357367 TCTCTTCCCTCAGTTTATATTTGGC 58.643 40.000 0.00 0.00 0.00 4.52
2758 2833 6.995091 CCTCTCTTCCCTCAGTTTATATTTGG 59.005 42.308 0.00 0.00 0.00 3.28
2759 2834 7.713073 GTCCTCTCTTCCCTCAGTTTATATTTG 59.287 40.741 0.00 0.00 0.00 2.32
2760 2835 7.625682 AGTCCTCTCTTCCCTCAGTTTATATTT 59.374 37.037 0.00 0.00 0.00 1.40
2761 2836 7.136203 AGTCCTCTCTTCCCTCAGTTTATATT 58.864 38.462 0.00 0.00 0.00 1.28
2762 2837 6.688554 AGTCCTCTCTTCCCTCAGTTTATAT 58.311 40.000 0.00 0.00 0.00 0.86
2763 2838 6.093617 AGTCCTCTCTTCCCTCAGTTTATA 57.906 41.667 0.00 0.00 0.00 0.98
2764 2839 4.954089 AGTCCTCTCTTCCCTCAGTTTAT 58.046 43.478 0.00 0.00 0.00 1.40
2765 2840 4.405756 AGTCCTCTCTTCCCTCAGTTTA 57.594 45.455 0.00 0.00 0.00 2.01
2766 2841 3.268034 AGTCCTCTCTTCCCTCAGTTT 57.732 47.619 0.00 0.00 0.00 2.66
2767 2842 4.405756 TTAGTCCTCTCTTCCCTCAGTT 57.594 45.455 0.00 0.00 0.00 3.16
2768 2843 4.618378 ATTAGTCCTCTCTTCCCTCAGT 57.382 45.455 0.00 0.00 0.00 3.41
2769 2844 6.310941 TCATATTAGTCCTCTCTTCCCTCAG 58.689 44.000 0.00 0.00 0.00 3.35
2770 2845 6.281190 TCATATTAGTCCTCTCTTCCCTCA 57.719 41.667 0.00 0.00 0.00 3.86
2771 2846 6.154363 CCATCATATTAGTCCTCTCTTCCCTC 59.846 46.154 0.00 0.00 0.00 4.30
2772 2847 6.022315 CCATCATATTAGTCCTCTCTTCCCT 58.978 44.000 0.00 0.00 0.00 4.20
2773 2848 5.782845 ACCATCATATTAGTCCTCTCTTCCC 59.217 44.000 0.00 0.00 0.00 3.97
2774 2849 6.295575 CCACCATCATATTAGTCCTCTCTTCC 60.296 46.154 0.00 0.00 0.00 3.46
2775 2850 6.268847 ACCACCATCATATTAGTCCTCTCTTC 59.731 42.308 0.00 0.00 0.00 2.87
2776 2851 6.146760 ACCACCATCATATTAGTCCTCTCTT 58.853 40.000 0.00 0.00 0.00 2.85
2777 2852 5.721225 ACCACCATCATATTAGTCCTCTCT 58.279 41.667 0.00 0.00 0.00 3.10
2778 2853 6.426646 AACCACCATCATATTAGTCCTCTC 57.573 41.667 0.00 0.00 0.00 3.20
2779 2854 7.471539 CGTTAACCACCATCATATTAGTCCTCT 60.472 40.741 0.00 0.00 0.00 3.69
2780 2855 6.645415 CGTTAACCACCATCATATTAGTCCTC 59.355 42.308 0.00 0.00 0.00 3.71
2781 2856 6.522054 CGTTAACCACCATCATATTAGTCCT 58.478 40.000 0.00 0.00 0.00 3.85
2782 2857 5.178809 GCGTTAACCACCATCATATTAGTCC 59.821 44.000 0.00 0.00 0.00 3.85
2783 2858 5.989777 AGCGTTAACCACCATCATATTAGTC 59.010 40.000 0.00 0.00 0.00 2.59
2784 2859 5.925509 AGCGTTAACCACCATCATATTAGT 58.074 37.500 0.00 0.00 0.00 2.24
2785 2860 7.375834 TCTAGCGTTAACCACCATCATATTAG 58.624 38.462 0.00 0.00 0.00 1.73
2786 2861 7.292713 TCTAGCGTTAACCACCATCATATTA 57.707 36.000 0.00 0.00 0.00 0.98
2787 2862 6.169557 TCTAGCGTTAACCACCATCATATT 57.830 37.500 0.00 0.00 0.00 1.28
2788 2863 5.801531 TCTAGCGTTAACCACCATCATAT 57.198 39.130 0.00 0.00 0.00 1.78
2789 2864 5.601583 TTCTAGCGTTAACCACCATCATA 57.398 39.130 0.00 0.00 0.00 2.15
2790 2865 4.481368 TTCTAGCGTTAACCACCATCAT 57.519 40.909 0.00 0.00 0.00 2.45
2791 2866 3.965379 TTCTAGCGTTAACCACCATCA 57.035 42.857 0.00 0.00 0.00 3.07
2792 2867 6.200475 GTCTTATTCTAGCGTTAACCACCATC 59.800 42.308 0.00 0.00 0.00 3.51
2793 2868 6.047231 GTCTTATTCTAGCGTTAACCACCAT 58.953 40.000 0.00 0.00 0.00 3.55
2794 2869 5.186409 AGTCTTATTCTAGCGTTAACCACCA 59.814 40.000 0.00 0.00 0.00 4.17
2795 2870 5.658468 AGTCTTATTCTAGCGTTAACCACC 58.342 41.667 0.00 0.00 0.00 4.61
2796 2871 7.479150 AGTAGTCTTATTCTAGCGTTAACCAC 58.521 38.462 0.00 0.00 0.00 4.16
2797 2872 7.636150 AGTAGTCTTATTCTAGCGTTAACCA 57.364 36.000 0.00 0.00 0.00 3.67
2798 2873 8.923609 AAAGTAGTCTTATTCTAGCGTTAACC 57.076 34.615 0.00 0.00 33.09 2.85
2799 2874 8.732227 CGAAAGTAGTCTTATTCTAGCGTTAAC 58.268 37.037 0.00 0.00 33.09 2.01
2800 2875 8.668353 TCGAAAGTAGTCTTATTCTAGCGTTAA 58.332 33.333 0.00 0.00 33.09 2.01
2801 2876 8.201554 TCGAAAGTAGTCTTATTCTAGCGTTA 57.798 34.615 0.00 0.00 33.09 3.18
2802 2877 7.081526 TCGAAAGTAGTCTTATTCTAGCGTT 57.918 36.000 0.00 0.00 33.09 4.84
2803 2878 6.674694 TCGAAAGTAGTCTTATTCTAGCGT 57.325 37.500 0.00 0.00 33.09 5.07
2804 2879 9.661187 TTATTCGAAAGTAGTCTTATTCTAGCG 57.339 33.333 0.00 0.00 33.09 4.26
2810 2885 9.886132 ACATGGTTATTCGAAAGTAGTCTTATT 57.114 29.630 0.00 0.00 33.09 1.40
2811 2886 9.886132 AACATGGTTATTCGAAAGTAGTCTTAT 57.114 29.630 0.00 0.00 33.09 1.73
2812 2887 9.362539 GAACATGGTTATTCGAAAGTAGTCTTA 57.637 33.333 0.00 0.00 33.09 2.10
2813 2888 8.095169 AGAACATGGTTATTCGAAAGTAGTCTT 58.905 33.333 0.00 0.00 35.14 3.01
2814 2889 7.612677 AGAACATGGTTATTCGAAAGTAGTCT 58.387 34.615 0.00 0.00 0.00 3.24
2815 2890 7.829378 AGAACATGGTTATTCGAAAGTAGTC 57.171 36.000 0.00 0.00 0.00 2.59
2816 2891 7.876068 TGAAGAACATGGTTATTCGAAAGTAGT 59.124 33.333 0.00 0.00 0.00 2.73
2817 2892 8.251750 TGAAGAACATGGTTATTCGAAAGTAG 57.748 34.615 0.00 0.00 0.00 2.57
2818 2893 8.786826 ATGAAGAACATGGTTATTCGAAAGTA 57.213 30.769 0.00 0.00 37.87 2.24
2819 2894 7.687941 ATGAAGAACATGGTTATTCGAAAGT 57.312 32.000 0.00 0.00 37.87 2.66
2820 2895 8.883731 ACTATGAAGAACATGGTTATTCGAAAG 58.116 33.333 0.00 9.84 45.94 2.62
2821 2896 8.786826 ACTATGAAGAACATGGTTATTCGAAA 57.213 30.769 0.00 0.00 45.94 3.46
2831 2906 7.824289 TCTCTTACCAAACTATGAAGAACATGG 59.176 37.037 0.00 0.00 42.07 3.66
2832 2907 8.777865 TCTCTTACCAAACTATGAAGAACATG 57.222 34.615 0.00 0.00 39.77 3.21
2833 2908 9.965902 ATTCTCTTACCAAACTATGAAGAACAT 57.034 29.630 0.00 0.00 42.39 2.71
2838 2913 8.778358 GCCATATTCTCTTACCAAACTATGAAG 58.222 37.037 0.00 0.00 0.00 3.02
2839 2914 7.719633 GGCCATATTCTCTTACCAAACTATGAA 59.280 37.037 0.00 0.00 0.00 2.57
2840 2915 7.072454 AGGCCATATTCTCTTACCAAACTATGA 59.928 37.037 5.01 0.00 0.00 2.15
2841 2916 7.227156 AGGCCATATTCTCTTACCAAACTATG 58.773 38.462 5.01 0.00 0.00 2.23
2842 2917 7.293535 AGAGGCCATATTCTCTTACCAAACTAT 59.706 37.037 5.01 0.00 37.06 2.12
2843 2918 6.615726 AGAGGCCATATTCTCTTACCAAACTA 59.384 38.462 5.01 0.00 37.06 2.24
2844 2919 5.430089 AGAGGCCATATTCTCTTACCAAACT 59.570 40.000 5.01 0.00 37.06 2.66
2845 2920 5.685728 AGAGGCCATATTCTCTTACCAAAC 58.314 41.667 5.01 0.00 37.06 2.93
2846 2921 5.975988 AGAGGCCATATTCTCTTACCAAA 57.024 39.130 5.01 0.00 37.06 3.28
2847 2922 5.975988 AAGAGGCCATATTCTCTTACCAA 57.024 39.130 5.01 0.00 45.33 3.67
2851 2926 5.780793 GGAGGTAAGAGGCCATATTCTCTTA 59.219 44.000 5.01 5.59 45.33 2.10
2853 2928 4.164204 GGAGGTAAGAGGCCATATTCTCT 58.836 47.826 5.01 0.00 41.63 3.10
2854 2929 3.262151 GGGAGGTAAGAGGCCATATTCTC 59.738 52.174 5.01 4.48 0.00 2.87
2855 2930 3.116159 AGGGAGGTAAGAGGCCATATTCT 60.116 47.826 5.01 0.00 0.00 2.40
2856 2931 3.008485 CAGGGAGGTAAGAGGCCATATTC 59.992 52.174 5.01 0.00 0.00 1.75
2857 2932 2.982488 CAGGGAGGTAAGAGGCCATATT 59.018 50.000 5.01 0.00 0.00 1.28
2858 2933 2.182312 TCAGGGAGGTAAGAGGCCATAT 59.818 50.000 5.01 0.00 0.00 1.78
2859 2934 1.578703 TCAGGGAGGTAAGAGGCCATA 59.421 52.381 5.01 0.00 0.00 2.74
2860 2935 0.343372 TCAGGGAGGTAAGAGGCCAT 59.657 55.000 5.01 0.00 0.00 4.40
2861 2936 0.617820 GTCAGGGAGGTAAGAGGCCA 60.618 60.000 5.01 0.00 0.00 5.36
2862 2937 0.617820 TGTCAGGGAGGTAAGAGGCC 60.618 60.000 0.00 0.00 0.00 5.19
2863 2938 1.501582 ATGTCAGGGAGGTAAGAGGC 58.498 55.000 0.00 0.00 0.00 4.70
2864 2939 5.693769 TTTTATGTCAGGGAGGTAAGAGG 57.306 43.478 0.00 0.00 0.00 3.69
2865 2940 6.472887 TGTTTTTATGTCAGGGAGGTAAGAG 58.527 40.000 0.00 0.00 0.00 2.85
2866 2941 6.442541 TGTTTTTATGTCAGGGAGGTAAGA 57.557 37.500 0.00 0.00 0.00 2.10
2867 2942 5.123979 GCTGTTTTTATGTCAGGGAGGTAAG 59.876 44.000 0.00 0.00 0.00 2.34
2868 2943 5.007682 GCTGTTTTTATGTCAGGGAGGTAA 58.992 41.667 0.00 0.00 0.00 2.85
2869 2944 4.585879 GCTGTTTTTATGTCAGGGAGGTA 58.414 43.478 0.00 0.00 0.00 3.08
2870 2945 3.421844 GCTGTTTTTATGTCAGGGAGGT 58.578 45.455 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.