>input_sequence_66113
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------------------------------------------------------------------------------AC
CGTGACTCGGCCGGAATAGAAAAACCCCATTCCCGATCCCA-CCCGCGGATTCCCCGAGTCTCACTCCGCTCCGCCTCC-
---CTTGGCCGCCTTGCCCAATTCCGCTGTCTGCTCTCCAAGCCCGAATGGCGGCGGAGGCCCGGGCCGAGGGCTCCGGG
CCGCCCGCGCCCCCTCCGCTGCCCGTCCCCGAGAAGCGCCCGGCCCCGGTGGACGGCCGGGAGGAGGAGCGGCCGGGGAC
GAAGCGGCGCCGCGCGAGCGTCGCGGCGCTCGACGGCGTGCCGTGCGCCGCGGCCAAGGGTGGGGATGGCGAGGCGGACG
GGAGCCGTGACGGCGGCTCGCCCTTCTCCTTTCAGCACGCGCGCGGCGGTTTCGTGGCGCTGGAGACGACGCCCAAGTTC
GGGTCATTCAACCCGCCGGTGGCCGCCGAGCAGGAAACCCTCCACCCGGAAGGTTCACCGGTAGTGAAGGAGGAGGAGGA
AGAT---ACGGCCTCGGCCACCGGAGTTGAGGACGGCAAAGACGGGAGCTCACAGTCAGTGGCGGCGGTGGACGATCAGG
GCCGTCGCCATCCGGGAAGACAAACTGAATCGGAACGATGACTCCCTGGATTTGAT-CCGTTTCTTCTCCGCGACCGAGT
TTAGATTTCAAGGGCGTCAATGCTGTTCTCTTCCTTCCTACTAGATCATGTGATAGTTTCAGTTGAAGGGAATGTATGTC
AAAGCTTTGTTTTCTTATGGAATGGAAG------ATTGGAAGTCAACGTTGATTCCCCTCATATACAC-GTAGAACCAAA
CCTGCTGTTTTTTCTCGCATACAGAATGCACCAACTC--TTCTTGCCAAGTGATCTGGAAACAATTGTGATTCCTTACTG
CGCATGCTGGTGATAGATACCTA-TGAAA---------------------------------------------------
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>chr3B_1_TraesCS3B01G361200
TTTTTTTCAAAATATGATTATGTTTAAAAA------TGTTTTCGAAAATTGTTCTCAATTC-AATATTTTGTTCAGGTTT
AAAAATTGTTACTGATTTT----AAAAA-ATCACGTTTAAAAATGGTTCGTTTATAAAATATATTCAGGGATTTCAAAAT
GGTCACGTTTGAAAATTTGTTTGTGT-TAAA-AAA----TCATAGTTCCGAAATTTGTTTACACTTTTGCAAAACATGTT
T-GAATTAAAAAAAACTGTTT-TTTTGCTTTTAAGAATATCCGGATTTCAAAATCGTTGATTATTTTCAAGAAAATGTTT
AAAAAAAGTCTTAAATGTTTACAAATCTCGATGCTAATTACTCTGGTTAAATATTTCCACTGCTTTCATTTATCACTAAC
AGTTATTAGGTGGAGTGGCTACACGCTGAGTTTAGCAGCGCCAGATCTTAGGATTGATTCCCCATGAGTA-TTTTTCTTT
TTGGTA-TTTTT--AAGTCAAAAGAAA-AACATGTTTCACGTTTGGTGAGCCGGCCCAGTCGCCAGCGATCCCGGTTCGA
CCAGCTGCCACGTCGACAATCCCTTTGAAAAAATGTCCAAGGTTTAATATAGACTAGGATTAGATAGTTCGGTGTGCTGA
TTTCAGGGATTTGAAGTTCGGGGTTCGATTTAGCTTAGGTCTACAAGTTTAAGGTTTATTTTGGACTTTTTCCTTACATT
TCTGTTTTACCTTTCCAGTAAACTTGTATCAGAGAGAGACCACCTATCGCA-----GCTGTGGAATCAATAGTGAGGACG
AGTAGATCCTAACAAAAACATA-GAGACGGTCGTGGCGGCAACGCAGCAGAGAGGCGCCTGCGCGCGTCGCAGCAACGGT
GCCGCCGCTGTGCAGCAACGACGACAGGAGAGGGCAGCGTGGGCGGTGTCGTCCCGTCCCGTCCCGTTCAGCAGGGCTCG
CATGTTACCCTCACGCCGTCAATCGTC-------ATCAACTGGCCACAAAAGGGGAGCCGGCGGAGGCGAGCACGCGCAC
CGTGACTCGGCCGGAATAGAAAAACCCCATTCCCGATCCCA-CCCGCGGATTCCCCGAGTCTCACTCCGCTCCGCCTCC-
---CTTGGCCGCCTTGCCCAATTCCGCTGTCTGCTCTCCAAGCCCGAATGGCGGCGGAGGCCCGGGCCGAGGGCTCCGGG
CCGCCCGCGCCCCCTCCGCTGCCCGTCCCCGAGAAGCGCCCGGCCCCGGTGGACGGCCGGGAGGAGGAGCGGCCGGGGAC
GAAGCGGCGCCGCGCGAGCGTCGCGGCGCTCGACGGCGTGCCGTGCGCCGCGGCCAAGGGTGGGGATGGCGAGGCGGACG
GGAGCCGTGACGGCGGCTCGCCCTTCTCCTTTCAGCACGCGCGCGGCGGTTTCGTGGCGCTGGAGACGACGCCCAAGTTC
GGGTCATTCAACCCGCCGGTGGCCGCCGAGCAGGAAACCCTCCACCCGGAAGGTTCACCGGTAGTGAAGGAGGAGGAGGA
AGAT---ACGGCCTCGGCCACCGGAGTTGAGGACGGCAAAGACGGGAGCTCACAGTCAGTGGCGGCGGTGGACGATCAGG
GCCGTCGCCATCCGGGAAGACAAACTGAATCGGAACGATGACTCCCTGGATTTGAT-CCGTTTCTTCTCCGCGACCGAGT
TTAGATTTCAAGGGCGTCAATGCTGTTCTCTTCCTTCCTACTAGATCATGTGATAGTTTCAGTTGAAGGGAATGTATGTC
AAAGCTTTGTTTTCTTATGGAATGGAAG------ATTGGAAGTCAACGTTGATTCCCCTCATATACAC-GTAGAACCAAA
CCTGCTGTTTTTTCTCGCATACAGAATGCACCAACTC--TTCTTGCCAAGTGATCTGGAAACAATTGTGATTCCTTACTG
CGCATGCTGGTGATAGATACCTA-TGAAATACTTACTCCC----------TAAGA---CCATTGTCGGACGGAGGGAGTA
GTTAGTTCTAGGATTTGCTTAATTTAATTACCGTTTCCCTTTACAAAGTCAAATTTTCTTATCAACAAACTTGATGGTGT
AGCTGCTCTTCTCATGTCAACATGGATTGAACAAAAATCCACACCTGTGTACCACAGCCACAAAACTGAGACCAAATACA
GAACCTCACTCGGTCAGTCCATGACTGGTGCTGACTCTGACAGTGAATCTTCTTTGCTAAACGTGGCATTCGATGACATT
GGTTCCCTGTACCACTCGTTCTCCTCACGAGTGAGAAAGCGAGCCTCTGCACCAAAGACATGAAGGGTTCAAAATTAGC-
--ATACAGGTTCCAGATTGTTTGCTTAACACTCCTTTTGTCTAATCGGATATTAGCAATCCAGTTTTGTC-ATGTGTTGA
GCAATTCAGCTAAGCGTTTTGGCCGTGTATAGATGACAAACATAAATTTTATGAAATGCAACAGGCAGCATACCTGACAC
AAAAACATCCTTGTAGTCGTCATCGTCATACACAAACGCAGGTGGATCTGGGGAACCAATTCCAACTATTGTGCTTCCAC
TGCATGAAACATTCACAATGTTGTCCCCATTAAATAGTGTGACTATGAAATGCGGTTCCAAATTGCAAATGCACATGAGG
GTCTATTAGCCCTGATTGTCACATCTTAAATACGATTTGTTTTCCTACTGAAATTCACAGAATGACAAATGACAGTGTTT
AGGTGCTTCCATATCGATGCTAACTACAGAGCATAATTTCGTAACTGGAGCTCCTGAAAAGACTCCTCTAACCGACCCAA
GAGTAAGGCAAGGTGTAATGTTCTGAAGGAAGCCAAATATAAACTGAGGGAAGAGAGGACTAATATGATGGTGGTTAACG
CTAGAATAAGACTACTTTCGAATAACCATGTTCTTCATAGTTTGGTAAGAGAATATGGCCTCTTACCTCCCTGACATAAA
AACAGC
>chr3B_2
-TTTTTTAAAAATATGATTATGTTTAAAAAAAGTCATGCTTTCCAAAATTGTTCTCAATTC-AAAAAAA---TCAGGTTT
AAA-ATTGTTACTGATTTGAAAAAAAAA-ATCACGTTTAAA--TGGTTCATGCAT-AAATATATTCAGGGATTTCAAAAT
GGTCACGTTTGAAAATGTGTTTGTGT-TTT--AAAAAAATCATAATTCCAAAATTTGTTTACACTTTTGCAAAACATGTT
CGGAATTTTAAAAAACTG--TATTTTGCTTTTAAGAATATCCGGATTTCAAAATCGTTGATTATTTTAAAGAAAATGTTT
TCAAAT-TTTTTAAATGTTTTCGAATCTCGATGCTAATTACTCTGATTAAATATGTTCGCTCCTTTCACTTGTCACTAAC
GGTAATTAGGTGGAGAGGTTACGCCGTGAGTTTAGTAGCGCCGGATCTCAGGTTTGATTCCCCACTTGTA-TTTTTCTTT
TTGGTA-TTTTT--CAGTCAAAAGAAC-AACATGTTTCACGTTTGGTGGGCCGGCCCAGTCGCCAGCGATCTCAGTTCGA
CCAGCTGCCACGTCGACATTCCCTCCGGAAAAACGCACAAGGTTTAATTTAGACCGGGATTATATAGTTCGGTGTGCTGA
TTTCAAGGATTTGAAGTTCGGGGTTTGATTTAGCTTTGATCTACAAGTTCAAGGTTTATTTTGGACTTTTTCCATAAAT-
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>chr3A_2
-TTTTTAAAAAATATGATTATGTTTAAAAAAAATCATGTTTTCCAAAATTGTTCTCAATTC-AAAAAAA---TCAGGTTT
AAAAATTGTTACTGATTTGAAA---AAA-ATCACGTTTAAA--TGGTTCATGCAT-AAATATATTCAGGTATTTCAAAAT
GGTCACATTTGAAAATGTGTTTGTGT-TTTA-AAAAAAATCATAATTCCAAAATTTGTTTACACTTTTGCGAAACATGTT
CGGAATTTAAAAAAACTG--TATTTTGCTTTTAAGAATATCCGGATTTCAAAATCGTTGATTATTTTAAAGAAAATGTTT
TCAAAAAGTCTTAAATGTTTTCGAATCTCGATGCTAATTACTCCTGTTAAATATGTTCGCTCCTTTCACTTGTCACTAAC
GGTAATTAGGTGGAGTGGTTACGTCGTGAGTTCAGCACCGCCGGATCTCAGGTTCGGTTCCCCACTTGTA-TTTTTCTTT
TTGGTA-TTTTT--CAGTCAAAAGAAC-AACATGTTTCACGTTTGGTGGGCCGGTCCAGTCGCCAGCGATCCCGGTTCGA
CCAGCTGCCACGTCGACAATCCCTCCGAAAAAACGCACAAGGTTTAATATAGACCGGGATTATATAGTTCGGTGTGCTGA
TTTTAAGGATTTAAAGTTTGGGGTTTGATTTAGCTTTGATCTACAAGTTCAAGGTTTATTTTGGACTTTTTCCT------
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>chr5A_2
-TTTTTAAAAAATATGATTATGTTTAAAAAAA-TCATGTTTTCGAAAATTGTTCTCAATTC-AAAAAAA---TCAGGTTT
AAAAATTGTTACTGATTTGAAAC---AA-ATCACGTTTAAA--TGGTTCATGCAT-AAATATATTCAGGGATTCCAAAAT
GGTCACGTTTGAAAATGTGTTTGTGT-TTAA-AAAA--ATCATAATTCCAAAATTTGTTTACACTTTTGCAAAACATGTT
CGGAATTTAAAAAAACTG--TATTTTGCTTTTAAGAATATCCGGATTTCAAAATCGTTGATTATTTTAAAGAAAATGTTT
CCAAAAATTCTTAAATGTTTTGGAATCTCGATGCTAATTACTCTGGTTAAATATGTTCGCTCCTTCCACTTGTCACTAAC
GCTAATTAGGTGGACTGGTTACGTCGTGAGTTTAGCAGCGCCGGATCTCAGGTTCGATTCCCCACTTGTA-TTTTTCTTT
TTGGTA-TTTTT--CAGTCAAAAGAAC-AACATGTTTCACGTTTGGTGGGCCGGCCCAGTCGCCAGCGATCCCGGTTCGA
CCAGCTGCCACGTCGACAATCCCTCTGAAAAAACGCACAAGGTTTAATATAGACCGGGATTATATAGTTCAGTGTGCTGA
TTTCAAGGATATGAAGTTCGGGGCTCGATTTAGCTTTGATCTACAAGTTCAAGGTTTATTTTGGACTTTTTCC-------
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>chr6B_2
-TTTTTAAAAAATATGATTATGTTTAAAAAAA-TCATGTTTTCCAAAATTGTTCTCAATTC-AAAAAAA---TCAGGTTT
AAAAATTGTTACTGATTTGAAA---AAA-ATCACGTTTAAA--TGGTTCATGCAT-AAATATATTCAGGTATTTCAAAAT
GGTCACATTTGAAAATGTGTTTGTGT-TTTA-AAAAATATCATAATTCCAAAATTTGTTTACACTTTTGCGAAACATGTT
CGGAATTTAAAAAAACTG--TATTTTGCTTTTAAGAATATCCGGATTTCAAAATCGTTGATTATTTTAAAGAAAATATTT
TCAAAAATTCTTAAATGTTTTCGAATCTCGATGCTAATTACTCCTGTTAAATATGTTCGCTCCTTTCACTTGTCACTAAC
GGTAATTAGGTGGAGTGGTTACGTCGTGAGTTCAGCACCGCCGGATCTCAGGTTCGGTTCCCCACTTGTA-TTTTTCTTT
TTGGTA-TTTTT--CAGTCAAAAGAAC-AACATGTTTCACGTTTGGTGGGCCGGTCCAGTCGCCAGCGATCCCGGTTCGA
CCAGCTGCCACGTCGACAATCCCTCCGAAAAAACGCACAAGGTTTAATATAGACCGGGATTATATAGTTCGGTGTGCTGA
TTTTAAGGATTTAAAGTTTGGGTTTTGATTTAGCTTTGATCTACAAGTTCAAGGTTTATTTTGGACTTTTTCCTT-----
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>chr1B_2
-TTTTTAAAAAATATGATTATGTTTAAAAAAA-TCATGTTTTCCAAAATTGTTCTCAATTC-AAAAAAA---TCAGGTTT
AAAAATTGTTACTGATTTGAAAT----AAATCACGTTTAAA--TGGTTCATGCAT-AAATATATTCAGGTATTTCAAAAT
GGTCACATTTGAAAATGTGTTTGTGT-TTAAAAAAA--ATCATAATTCCAAAATTTGTTTACACTTTTGCGAAATATGTT
CGGAATTTAAAAAAACTG--TATTTTGCTTTTAAGAATATCCGGATTTCAAAATCGTTGATTATTTTAAAGAAAATGTTT
TCAAAAATTCTTAAATGTTTTCGAATCTCGATGCTAATTAGTCCTGTTAAATATGTTCGCTCCTTTCACTTGTCACTAAC
GGTAATTAGGTGGAGTGGTTACGTCGTGAGTTCAGCACCGCCGGATCTCAGGTTCGGTTCCCCACTTGTA-TTTTTATTT
TTGGTA-TTTTT--CAGTCAAAAGAAC-AACATGTTTCACGTTTGGTGGGCCGGTCCAGTCGCCAGCGATCCCGGTTCGA
CCAGCTGCCACGTCGACAATCCCTCCGAAAAAACGCACAAGGTTTAATATAGACCGGGATTATATAGTTCGGTGTGCTGA
TTTTAAGGATTTAAAGTTTGGGGTTTGATTTAGCTTTGATCTACAAGTTCAAGGTTTATTTTGGACTTTTTCCT------
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>chr4B_2
-TTTTTTAAAAATATGATTATGTTTAAAATAATTCATGCTTTCCAAAATTGTTCTCAATTCAAAAAAAA---TCAGGTTT
AAAAATTGTTACTGATTTGAAA---AAAAATCACGTTTAAA--TGGTTCATGCAT-AAATATATTCAGGGATTTCAAAAT
GGTCACGTTTGAAAATGTGTTTGTGT-TTTAAAAAA--ATCATAATTCCAAAAAAGTTTTACACTTTTGCAAAACATGTT
CGGAATTTAAAAAAACTG--TATTTTGCTTTTAAGAATTTCCGGATTTCAAAATCGTTGATTATTTTAAAGAAAATGTTT
TCAAAT-TTTTTAAATGTTTTCGAATCTCGATGCTAATTATTCTGGTTAAATATGTTCGCTCCTTTCACTTGTCAGTAAC
GGTAATTAGGTGGAGTGGTTACGCCGTGAGTTTAGTAGCGCCGGATCTCAGGTTCGATTCCCCACTTGTTTTTTTTCTTT
TTGGTA-TTTTT--CAGTCAAAAGAAC-AACATGTTTCACGTTTGGTGGGCCGGCCCAGTCGCCAGCGATCCCGGTTCGA
CCACCTGCCACGTCGACAATCCCTCCGGAAAAACGCACAAGGTTTAATATAGACCGGGATTATATAGTTCGGTGTGCTGA
TTTCAAGAATTTGAAGTTCGGGGTTCGATTTAGCTTTGATCTACAAGTTTAAGGTTTATTTTGGACTTTTTCC-------
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>chr6D_3
--TTTTTCAAAATATGATTATGTTTAAAAATG-TCATCTTTTCGAAAAAAAATCTCAATTC-AAAATTTTGTTCAGGTTT
AAAAATTGTTACTGA-----------AAAATCACGTTTAAAAATGGTTCAGGTATAAAATATATTCAGGGATTTCAAAAT
GGTCATGTTTGAAACTTTGTTTGTGTTTTAA-AAAA--ACCGTATTTCCAAAATTTCTTTACACTTTTGCAAA-CATGTT
CACAATTTTAAAAAACTG--T-TTTTGCTTTTAAGGATATCCGGATTTTAAAATTGTTGATTATTTTCAAGAAAATGTTT
A-AAAAACTCTAAAATGTTTTCGAATCTGGATGCTAATTAGTCTGGTTAAATATTTTCGCTCCTTTTATTTATCACTAAC
AGTTATTAGGTGGAGTCGCTACATGATGAGTTTAGTAGCGGCAGATCTTAAGTTCGATTCCCCATGAGTA-TTTTTCTTT
TTGGTA-TTTTTATAAGTCAAAAGAAAAAACATGTTTCGCGCTTGGTGGGCCGGCCCAGTCGCCAGCGATCCCAGTTCGA
CCAGCTGCCACGTCGACAATCCCTTCGAAAAAGCGTCCAAGATTTAATATAGACCGGGATTAGATAGTTCGGTGTGCTGA
TTTCAGTGATTTGAAGTTCGGGGTTCGATTTAGCTTTGGTCTACAAGTTCAACGTTTGTTTTGGACTTTTTCC-------
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>chr2D_3
--TTTTTCAAAATATGATTATGTTTAATAATGTTCATCTTTTCAAAAAAAAATCTCAATTC-AAAATTTTGTTCAGGTTT
AAAAATTGTTACTGA-----------AAAATCACGTTTAAAAATGGTTCAGGTATAAAATATATTCAGGGATTTCAAAAT
GGTCACGTTTGAAACTTTGTTTGTGTTTTAA-AAAA--ACCGTATTTCCAAAATTTCTTTACACTTTTGCAAA-CATGTT
CGCAATTTTAAAAAACTG--T-TTTTGCTTTTAAGGATATCCGGATTTTAAAATTGTTGATTATTTTCAAGAAAATGTTT
A-AAAAA-TCTAAAATGTTTTTGAATCTGGATGCTAATTAGTCTGGTTAAATATTTTCGCTCCTTTTATTTATCACTAAC
GGTTATTAGGTGGAGTCGCTACATGATGAGTTTAGTAGCGGCAGATCTTAAGTTCGATTCCCCATGAGTA-TTTTTCTTT
TTGGTA-TTTTTATAAGTCAAAAGAAAAAACATGTTTCGCGCTTGGTGGGCCGGCCCAGCCGCCAGCGATCCCAGTTCGA
CCAGCTGCCACGTCGACAATCCCTTCGAAAAAGCGTCCAAGATTTAATATAGACCGGGATTAGATAGTTCGGTGTGCTGA
TTTCAGTGATTTGAAGTTCGGGGTTCGATTTAGCTTTGGTCTACAAGTTCAAGGTTTGTTTTGGACTTTTTCC-------
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>chr7A_121
--------------------------------------------------------------------------------
----------------------------------------------------TATAAAATATATTCAGGGATTTCAAA-T
GGTCACATTTGAAACTTTGTTTGTGT-TTTTAAGAA--ACCGTATTTCCAAAATTTCTTTACACTTTTGCAAA-CATGTT
CGCAATTTTTTAAAATGG--TC-TTTGCTTTTAAGGATATCCGGATTTTAAAATCTTTGATTATTTTCAAGAAAATGTTT
A-AAAAAATCTAAAATGTTTTCGAATCTGGATGCTAATTAGTCTGGTTAAATATTTTCGCTCCTTTTATATATCACTAAC
AGTTATTAGGTGGAGTGGCTACAGGATGAGTTTAGTAGTGGCAGATCTTAGGTTTGATTCTCCACGAGTA-TTTTTCTTT
TTGGATTTTTAT--AAGTCGAAAGAAA-AACATGTTTCGCGCTTGGTGGACCGGCCCAGTCGCCAGCGATCCCGGTTCGA
CCAGCTGCCCCGTCGACAATCCCTTCGAAAAACCGCCCAAGGTTTAATATAGACCGGGATTAGATAGTTCGGTGTGCTGA
TTTCGGGGATTTGAAGTTCAAGGTTCGATTTAGCTTTGGTCTATAAGTTCAAGGTTTGTTTTAGAATTTTTCC-------
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>chr3D_689
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-------------------------------------------------------------------------TTACATT
TCTGTTTTACCTTTCCAGTAAACTTGTATCAGAGAGAGACCACCTATCGCAATTGAGCTGTGAAATCAATAGAGAGGACG
AGTAGATCCTAACAAAAACATA-GAGACGGTCGTGGCGGTAACGCAGCAGAGAGGCGCCTGCGCGCGTCGCAGCAAAGGT
GCCGCCGCTGTGCAGCAACGACGACAGGAGAGGGCAGCGTGGGCGGTGTCGTCCCGTCCCGTCCCGTCCAGCAGGGCTCG
CATGTTACCCTCACGCCGTTAATCGTCATCA-------ACTGGCCACAAAAAGGAAGCTGGCGGAGGCGAGCACGCGCAC
CGTGACTCGGCCGGAATAGAAAACT-CCACTCCCGATCCCACCCCGCGGATTCCCCGAGCCTCACTCCGCTCCGCCTCCA
CCCCTTGGCCGCCCTGCCCAATTCCGCTGTCTGCTCTCCAAGCCCGAATGGCGGCGGAGGCCCGGGCCGAGGGCTCCGGG
CCGCCCGCGCCCCCTCCGCTGCCCGTCCCCGAGAAGCGCCCGGCCCCGGTAGACGGCCGGGAGGAGGAGCGGCCCGGGAC
GAAGCGGCGCCGCGCGAGCGTCGCGGCGCTCGACGGCGTGCCCTGCGCCGCGGCCAAGGGCGCGGACGGCGAGGCGGACG
GGAACCGTGACGGCGGCTCGTCCTTCTCCTTCCAGCACTCGCGCGGCGGTTTCGTGGCGCTGGAGACGACGCCCAAGTTC
GGGTCATTCAACCCGCCGGTGGCCGCCGAGCAGGAGGCCCTCCACCCGGAAGATTCACCGGTTGTGAAGGAGGAGGGG--
-GAT---ACGGCCTCGGCCACCGGAGTTGAGGTTGGCAAAGACGGAAGTTCGCAGTCAGTGGCGGCGGTGGACGATCAGG
GCCGTCGCCATCCGGGAAGACAAACTGAATCGGAACGATGACTCTCTGGATTTGATTA-GTTTCTTCTCCGCAGCCCGGT
TTAGATTTCAAGGGCGTCAATGTTGTTCTCTTCCTTCCTACTAGATCATGTGATAGTTTCAGTTGAAGGGAATGTATGTC
AAAGCTTTGTTTTCTTATGGAATGGAGG------ATTGGAAGTCAACGTTGATTCCTG----------TGTAGAACCAAA
CCTGGCGTTTTTTCC-----------------------------------------------------------------
-------------TAGATACCTACTGAAATACTCCCTCCCTCCCATAATGTAAGA---CCATTATGGGACGGAGGGAGTA
GTTAGTTCCAGGATTTGCTTAATTTAATTACCGTTTCCCTTTACAAAATCGAGTTTTCTTATCAACAAACTTGATGGTGT
AGCTGCTCTTCTCATGTCAACATGGATTGAACAAA--TCCACACCTGTGTGCCACAGCCACAAAACTGAGACCAAATACA
GAACCTCACTCGGTCAGTCCACGACTGGTGCTGCCTCTGACAGTGAATCTTCTTTGCTAAACGTGGCATTCGATGACATT
GGTTCCCTGTACCACTCATTCTCCTCGCGAGTGAGGAAGCGAGCCTCTGCACCAAAGACATGGAGGATTCAAAATTAGCG
CAATACAGGTTCCAATTT-TTTGTTTAACACAACTTTTGTCTATTCGGATATCAGCAATCCAGTTTTGTCTATGTGTTCG
GCAATTCGGCTAAGCGTTTTGACCTTATATAGATGAGAAACATAAATTTTGTGAAATGCAACAGGCAACATACCTGACAC
AAAAACATCCTTGTAGTCATCATCGTCATACACAAACGCAGGTGGATCTGGGGAACCAATTCCAACTATAGTGCTTCCAC
TGCATGAAACATTCACAATGTTGTCCCGATCAAATAGTTTGGCTACTAAATGCATTTCCAAATTTCAAATGCAGAT----
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>chr3A_778
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-------CCTAACAAAAACATAAGAGACGGTCGTGGCGGCAACGCAGCAGAGAGGCGCCTGCGCGCGTCGCAGCAAAGGT
GCCGCCGCTGTGCAGCAGCGACGACAGGAGAGGGCAGCGTGGGCGGTGTCGTCCCGTCCCGTCCCGCAAGCCATTTCTCG
CATGTTACCCTCACGCCGTCAATCGTCGTCACTCATCAACTGGCCACAAAAGGGGAGCCGGCGGAGGCGAGCACGCGCAC
CGTGACTCGGCCGGAATAGAAAACT-CCACTCCCGATCCCACCCCGCGGATTCCCCGAGCCTCACTCCGCTCCGCCTCC-
---CTTGCCCAATTCCG------CCGCTGTCTGCTCTCCAAGCCCGAATGGCGGCGGAGGCCCGGGCCGAGGGCTCCGGG
CCGCCCGCGCCCCCTCCGCTGCCCGTCCCCGAGAAGCGCCCGGCCCCGGCGGACGGCCGGGAGGAGGAGCGGCCCGGGAC
GAAGCGGCGCCGCGCGAGCGTCGCGGCGCTCGACGGCGTGCCCTGCGCCGCGGCCAAGGGTGGGGATGGCGAGGCGGACG
GGAACCGTGACGGCGGCTCGTCCTTCTCCTTCCAGCACGCGCGCGGCGGTTTCGTGGCGCTGGAGACGACGCCCAAGTTC
GGGTCGTTCAACCCGCCGGTGGCCGCCGAGCAGGAGGCCCTCGACCCGGAAGATTCCCCGGTTGCGAAGGAGGAGGAGGA
TACGGCCACGGCCTCGGACACCGGAGCTGAGGACGGCAAAGACGGGAGCTCACAGTCAGTGGCGGCGGTGGGCGATCAGG
GCCGTCGCCATCCGGGAAGGCAAACTGAATCGGAACGATGACTCCCTGGATTTGATTCCGTTTCTTGTCCGCGACCCAGC
TTAGATTTCAAGGGCGTCAATGTCGTTCTCTTCCTTCCTAGTAGATCATGTGATAGTTTCAGTTGAAGGGAATGTATGTC
AAAGCTTTGTTTTCTTATGGAATGGAAGATTGGAATTGGAAGTCAACGTTGATTCCCTTCAAATATACTGTAGAACCAAA
CCTGGTGTTTTCCCTCTCATACAGAATGCACCCACTCTTTTCTTGCCAAGTGATCTGGAAACAATTGTGATTCCTTACTG
CGCATGCTAGTGATAGATACCTACTGAAATACTCCCTCCCTCCCTCCCTCCCTCCCTCCCATAATGGGCCGGAGGGAGTA
GTTAGTTCCAGGATTTGCTCGATTTAATTACCGTTTCCCTTTACAAAATCAAATTTTCTTATCAACAAACTTGATGGTGT
AGCTGCTCTTCTCATGTCAACATGTATTGAACAAA--TCCACACCTGTGTGCCACAGCCGCAAAACTGAGACCAAATACA
GAACCTCACTCGGTCAGTCCACGACTGGTGCTGCCTCTGACAGTGAATCTTCTTTGCTAAACCTGGCATTCGACGACATT
GGTTCCCTGTACCACTCATTCTCGTCGCGAGTGAGAAAGCGAGCCTCTGCACCAAAGACATGGAGGACTCAAAATTAGCG
CAATACAGGTTCCAAATTGTTTGTTTAACACAACTTTTGTCTGTTCGGATATCAGCAATCCAGTTTTGTCTATGTGTTCG
GCAATTCGGCTAAGCGTTTCGACCGTGTATAGATGAGGAACATGAATTTTGTGAAATGCAACAGGCAACATACCTGACAC
AAAAACATCCTTGTAGTCGTCATCGTCATACACAAACGCAGGTGGATCTGGGGAACCAATTCCAACTATAGTGCTTCCAC
TGCATGAAACATTCACAATGTTGTCCCTTTCAAATAGTTTGCCTACTAAATGCATTTCCAAATTCCAAATGCAGAT----
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>SNPs
S---------------------------------------------------------------S---------------
------------------S------------------------------S-S----------------------------
----------------------------S---------------S----S------------------------------
S------S----------SS------------------------------------------------------------
-S------------------S-S---------------------------------S-S--S------------------
-------------------------S--------------------------S---------------------------
------------------------------------------------S-------------------------------
---------------------------------S--------------------SS------------------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------S---------S-------
----------------------------------------------------------------------------S---
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
-----------------------SSS---S-----------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
------------------------------------------S-------------------------------------
---S----------------S----------S------------------------------------------------
-----------------------------------SS---------------S---------S-----------------
S-------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
----------------------S---------------------------------------------------------
---------------------------------------------------------S---S---S--------------
----S-----------S---------------S-----------------------------------------------
--------S------------------------SS----------------------------S-S--------------
--------S--------------------------------------S--------------------------------
-----------------------------------SS-------------S-----------------------------
---------------------S-----------S----------------------------------------------
-----------------S--------S-----------------------------------S---S-------------
--------------S--------S-------SS----------S--------S-------------------------SS
-------S-------------S--------------S-------------S----------------S------------
---------------------------------------------------------------------S----------
---------------------------S--S-------S--S---SS------SS---------S--------S--SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_453
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AGCAGCGCCAGATCTTAGGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>reverse_2182
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TGACTGGTGCTGACTCTGAC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
