Multiple sequence alignment - TraesCS3B01G356800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G356800 chr3B 100.000 2321 0 0 1 2321 566985561 566987881 0.000000e+00 4287.0
1 TraesCS3B01G356800 chr3B 91.429 280 24 0 88 367 627876404 627876683 3.620000e-103 385.0
2 TraesCS3B01G356800 chr3B 87.869 305 34 3 66 369 183466123 183466425 2.840000e-94 355.0
3 TraesCS3B01G356800 chr3B 90.909 176 14 2 1947 2121 235888516 235888690 3.860000e-58 235.0
4 TraesCS3B01G356800 chr3B 89.444 180 19 0 1932 2111 734662108 734662287 6.450000e-56 228.0
5 TraesCS3B01G356800 chr3B 92.810 153 3 2 1690 1838 566987398 566987250 5.020000e-52 215.0
6 TraesCS3B01G356800 chr3B 95.041 121 5 1 1559 1678 545060812 545060692 3.040000e-44 189.0
7 TraesCS3B01G356800 chr3B 94.262 122 5 2 1558 1678 457968678 457968798 3.940000e-43 185.0
8 TraesCS3B01G356800 chr3B 93.846 65 0 1 1687 1751 820350894 820350954 6.830000e-16 95.3
9 TraesCS3B01G356800 chr3B 100.000 32 0 0 71 102 627875869 627875900 2.490000e-05 60.2
10 TraesCS3B01G356800 chr3D 85.748 1256 78 40 376 1566 433747307 433748526 0.000000e+00 1234.0
11 TraesCS3B01G356800 chr3D 91.908 173 14 0 1946 2118 529133645 529133817 2.300000e-60 243.0
12 TraesCS3B01G356800 chr3D 93.548 124 7 1 1556 1678 439679611 439679488 1.420000e-42 183.0
13 TraesCS3B01G356800 chr3D 95.238 42 2 0 1837 1878 433748539 433748580 1.490000e-07 67.6
14 TraesCS3B01G356800 chr3A 90.202 643 47 10 847 1474 572340656 572341297 0.000000e+00 824.0
15 TraesCS3B01G356800 chr3A 93.023 215 15 0 2107 2321 572341547 572341761 4.810000e-82 315.0
16 TraesCS3B01G356800 chr3A 98.230 113 2 0 1837 1949 572341440 572341552 5.060000e-47 198.0
17 TraesCS3B01G356800 chr7B 98.680 303 4 0 70 372 701208240 701207938 2.620000e-149 538.0
18 TraesCS3B01G356800 chr7B 95.082 122 5 1 1559 1679 501519418 501519539 8.460000e-45 191.0
19 TraesCS3B01G356800 chr7B 95.000 120 5 1 1561 1679 493115882 493115763 1.090000e-43 187.0
20 TraesCS3B01G356800 chr7B 98.413 63 0 1 1692 1753 573942460 573942398 2.440000e-20 110.0
21 TraesCS3B01G356800 chr7B 96.923 65 1 1 1690 1753 573958100 573958036 8.770000e-20 108.0
22 TraesCS3B01G356800 chr7B 98.361 61 0 1 1777 1836 573942400 573942460 3.150000e-19 106.0
23 TraesCS3B01G356800 chr7B 96.875 64 1 1 1777 1839 573958038 573958101 3.150000e-19 106.0
24 TraesCS3B01G356800 chr4D 95.000 300 14 1 70 369 22865157 22865455 9.710000e-129 470.0
25 TraesCS3B01G356800 chr7D 88.961 308 27 6 70 372 598010077 598009772 7.830000e-100 374.0
26 TraesCS3B01G356800 chr5A 86.230 305 40 2 66 369 665591036 665591339 1.720000e-86 329.0
27 TraesCS3B01G356800 chr7A 89.868 227 23 0 129 355 690173906 690174132 2.260000e-75 292.0
28 TraesCS3B01G356800 chr7A 96.825 63 0 1 1690 1750 501067574 501067512 1.130000e-18 104.0
29 TraesCS3B01G356800 chr7A 96.825 63 0 1 1778 1838 501067512 501067574 1.130000e-18 104.0
30 TraesCS3B01G356800 chr7A 100.000 29 0 0 70 98 690173880 690173908 1.000000e-03 54.7
31 TraesCS3B01G356800 chr5D 85.957 235 30 3 136 369 477021840 477022072 4.950000e-62 248.0
32 TraesCS3B01G356800 chr5D 87.273 110 13 1 2207 2316 22871451 22871559 8.710000e-25 124.0
33 TraesCS3B01G356800 chr2B 91.667 168 13 1 1944 2111 47239597 47239431 4.990000e-57 231.0
34 TraesCS3B01G356800 chr2B 91.617 167 14 0 1947 2113 741379623 741379457 4.990000e-57 231.0
35 TraesCS3B01G356800 chr2B 83.721 172 24 3 1559 1729 6259371 6259539 2.390000e-35 159.0
36 TraesCS3B01G356800 chr2B 91.429 70 2 3 1772 1838 164900444 164900376 2.460000e-15 93.5
37 TraesCS3B01G356800 chr2B 93.651 63 1 2 1690 1749 164900376 164900438 8.830000e-15 91.6
38 TraesCS3B01G356800 chr2B 92.188 64 2 2 1777 1838 366019522 366019584 1.140000e-13 87.9
39 TraesCS3B01G356800 chr5B 90.698 172 16 0 1947 2118 162728425 162728596 1.790000e-56 230.0
40 TraesCS3B01G356800 chr5B 94.488 127 6 1 1554 1679 562793695 562793821 6.540000e-46 195.0
41 TraesCS3B01G356800 chr5B 94.262 122 5 2 1559 1679 566119868 566119988 3.940000e-43 185.0
42 TraesCS3B01G356800 chr1B 90.698 172 15 1 1947 2118 515448598 515448428 6.450000e-56 228.0
43 TraesCS3B01G356800 chr1B 91.824 159 13 0 1942 2100 496729664 496729506 3.000000e-54 222.0
44 TraesCS3B01G356800 chr1B 90.441 136 9 4 1545 1678 507765927 507766060 2.370000e-40 176.0
45 TraesCS3B01G356800 chr6A 89.385 179 16 2 1937 2115 109488509 109488684 3.000000e-54 222.0
46 TraesCS3B01G356800 chr1D 78.738 301 53 5 70 369 69262975 69263265 8.460000e-45 191.0
47 TraesCS3B01G356800 chr1D 93.750 64 0 1 1775 1838 463867620 463867561 2.460000e-15 93.5
48 TraesCS3B01G356800 chr1D 93.651 63 0 1 1689 1751 463867560 463867618 8.830000e-15 91.6
49 TraesCS3B01G356800 chr1D 76.404 178 31 8 70 246 477317679 477317846 4.110000e-13 86.1
50 TraesCS3B01G356800 chr1D 100.000 34 0 0 2218 2251 352536640 352536673 1.930000e-06 63.9
51 TraesCS3B01G356800 chr6D 95.652 69 1 1 1685 1751 449284151 449284083 2.440000e-20 110.0
52 TraesCS3B01G356800 chr6D 96.875 64 0 1 1777 1838 449284083 449284146 3.150000e-19 106.0
53 TraesCS3B01G356800 chr2A 95.238 63 0 2 1777 1839 601704667 601704608 1.900000e-16 97.1
54 TraesCS3B01G356800 chr2A 95.161 62 0 2 1690 1751 601704609 601704667 6.830000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G356800 chr3B 566985561 566987881 2320 False 4287.000000 4287 100.000000 1 2321 1 chr3B.!!$F4 2320
1 TraesCS3B01G356800 chr3B 627875869 627876683 814 False 222.600000 385 95.714500 71 367 2 chr3B.!!$F7 296
2 TraesCS3B01G356800 chr3D 433747307 433748580 1273 False 650.800000 1234 90.493000 376 1878 2 chr3D.!!$F2 1502
3 TraesCS3B01G356800 chr3A 572340656 572341761 1105 False 445.666667 824 93.818333 847 2321 3 chr3A.!!$F1 1474

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.108585 AGACGGATGTTGCAACCTGT 59.891 50.0 26.14 21.17 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1684 2290 0.106116 GGGACGGAGGGAGTATGTCT 60.106 60.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.231734 CAGGAAGACGGATGTTGCA 57.768 52.632 0.00 0.00 0.00 4.08
19 20 1.522668 CAGGAAGACGGATGTTGCAA 58.477 50.000 0.00 0.00 0.00 4.08
20 21 1.197721 CAGGAAGACGGATGTTGCAAC 59.802 52.381 22.83 22.83 0.00 4.17
21 22 0.521735 GGAAGACGGATGTTGCAACC 59.478 55.000 26.14 11.94 0.00 3.77
22 23 1.523758 GAAGACGGATGTTGCAACCT 58.476 50.000 26.14 17.24 0.00 3.50
23 24 1.197721 GAAGACGGATGTTGCAACCTG 59.802 52.381 26.14 18.24 0.00 4.00
24 25 0.108585 AGACGGATGTTGCAACCTGT 59.891 50.000 26.14 21.17 0.00 4.00
25 26 1.346395 AGACGGATGTTGCAACCTGTA 59.654 47.619 26.14 8.49 0.00 2.74
26 27 1.732259 GACGGATGTTGCAACCTGTAG 59.268 52.381 26.14 15.53 0.00 2.74
27 28 1.346395 ACGGATGTTGCAACCTGTAGA 59.654 47.619 26.14 7.32 0.00 2.59
28 29 2.224426 ACGGATGTTGCAACCTGTAGAA 60.224 45.455 26.14 6.55 0.00 2.10
29 30 2.811431 CGGATGTTGCAACCTGTAGAAA 59.189 45.455 26.14 5.77 0.00 2.52
30 31 3.252215 CGGATGTTGCAACCTGTAGAAAA 59.748 43.478 26.14 5.01 0.00 2.29
31 32 4.261405 CGGATGTTGCAACCTGTAGAAAAA 60.261 41.667 26.14 4.24 0.00 1.94
64 65 1.241165 CACAGAATGCTGCAAGGTCA 58.759 50.000 6.36 0.00 46.26 4.02
65 66 1.199327 CACAGAATGCTGCAAGGTCAG 59.801 52.381 6.36 4.42 46.26 3.51
66 67 1.072806 ACAGAATGCTGCAAGGTCAGA 59.927 47.619 6.36 0.00 46.26 3.27
67 68 1.738350 CAGAATGCTGCAAGGTCAGAG 59.262 52.381 6.36 0.00 36.19 3.35
68 69 1.350351 AGAATGCTGCAAGGTCAGAGT 59.650 47.619 6.36 0.00 36.19 3.24
69 70 1.736681 GAATGCTGCAAGGTCAGAGTC 59.263 52.381 6.36 0.00 36.19 3.36
109 628 2.176247 TAGCTTAGCTAGGCCAGGTT 57.824 50.000 22.94 7.90 40.44 3.50
114 633 3.071747 GCTTAGCTAGGCCAGGTTAATCT 59.928 47.826 16.64 0.00 36.15 2.40
124 643 1.743394 CAGGTTAATCTTGCCGGTTCC 59.257 52.381 1.90 0.00 0.00 3.62
147 666 3.318017 GCTAGAGTCGTCAAAAGCAAGA 58.682 45.455 0.00 0.00 0.00 3.02
151 670 4.945246 AGAGTCGTCAAAAGCAAGACTTA 58.055 39.130 0.00 0.00 41.61 2.24
163 682 3.251004 AGCAAGACTTAGCGTTTGGAAAG 59.749 43.478 0.00 0.00 35.48 2.62
176 695 6.814146 AGCGTTTGGAAAGACACAAAATTAAA 59.186 30.769 0.00 0.00 38.20 1.52
192 711 7.064728 ACAAAATTAAAGCGTTAACTGCCAAAA 59.935 29.630 7.00 9.59 32.04 2.44
199 718 2.412870 GTTAACTGCCAAAATGCCCAC 58.587 47.619 0.00 0.00 0.00 4.61
208 727 0.309612 AAAATGCCCACGTTCGTGTC 59.690 50.000 20.93 13.76 34.59 3.67
209 728 0.534203 AAATGCCCACGTTCGTGTCT 60.534 50.000 20.93 3.31 34.59 3.41
220 739 0.380378 TTCGTGTCTTTTGCCAGTGC 59.620 50.000 0.00 0.00 38.26 4.40
246 765 2.764314 CCAAATTGGCTCGCCTCCG 61.764 63.158 9.65 0.00 36.94 4.63
247 766 2.040544 CAAATTGGCTCGCCTCCGT 61.041 57.895 9.65 0.00 36.94 4.69
285 804 2.494471 GCGGTTAAAGGGTAAATTGCCT 59.506 45.455 0.00 0.00 0.00 4.75
288 807 4.090819 GGTTAAAGGGTAAATTGCCTCCA 58.909 43.478 0.00 0.00 0.00 3.86
332 851 2.297033 CCAAATGAATATCCTTGCCCGG 59.703 50.000 0.00 0.00 0.00 5.73
348 867 2.515757 GGCAAGGCTAGGAGCTGC 60.516 66.667 0.00 0.00 41.99 5.25
359 878 2.467826 GGAGCTGCGCTTGCCTAAG 61.468 63.158 19.14 3.49 39.88 2.18
367 886 1.202188 GCGCTTGCCTAAGATCCAAAC 60.202 52.381 0.00 0.00 35.92 2.93
368 887 1.062587 CGCTTGCCTAAGATCCAAACG 59.937 52.381 0.00 0.00 35.92 3.60
369 888 1.401905 GCTTGCCTAAGATCCAAACGG 59.598 52.381 0.00 0.00 35.92 4.44
370 889 2.939640 GCTTGCCTAAGATCCAAACGGA 60.940 50.000 0.00 0.00 35.92 4.69
371 890 2.396590 TGCCTAAGATCCAAACGGAC 57.603 50.000 0.00 0.00 34.62 4.79
372 891 1.906574 TGCCTAAGATCCAAACGGACT 59.093 47.619 0.00 0.00 34.62 3.85
373 892 2.304761 TGCCTAAGATCCAAACGGACTT 59.695 45.455 0.00 0.00 34.62 3.01
374 893 2.937149 GCCTAAGATCCAAACGGACTTC 59.063 50.000 0.00 0.00 34.62 3.01
383 902 0.942252 AAACGGACTTCGGCTTGTTC 59.058 50.000 0.00 0.00 44.45 3.18
414 933 1.167851 ATCGAAACTGGTCGGACGTA 58.832 50.000 1.43 0.00 41.43 3.57
416 935 0.239347 CGAAACTGGTCGGACGTACT 59.761 55.000 1.43 0.00 37.37 2.73
418 937 2.096496 CGAAACTGGTCGGACGTACTAT 59.904 50.000 1.43 0.00 37.37 2.12
419 938 3.426695 CGAAACTGGTCGGACGTACTATT 60.427 47.826 1.43 0.00 37.37 1.73
421 940 3.498927 ACTGGTCGGACGTACTATTTG 57.501 47.619 1.43 0.00 0.00 2.32
431 958 6.149308 TCGGACGTACTATTTGTCTCTAACAA 59.851 38.462 0.00 0.00 46.11 2.83
440 967 3.637998 TGTCTCTAACAAGGACGTCAC 57.362 47.619 18.91 6.91 34.03 3.67
461 988 3.004734 ACTTTCTCTCCGGCAAAACAATG 59.995 43.478 0.00 0.00 0.00 2.82
462 989 2.270352 TCTCTCCGGCAAAACAATGT 57.730 45.000 0.00 0.00 0.00 2.71
477 1006 2.427453 ACAATGTGCACCCGTGTAAAAA 59.573 40.909 15.69 0.00 0.00 1.94
497 1026 2.412421 AACTTGGAGACGTGTCGTAC 57.588 50.000 6.62 0.00 41.37 3.67
509 1038 3.494626 ACGTGTCGTACTCGAGAAAACTA 59.505 43.478 21.68 3.56 46.96 2.24
520 1049 3.058432 TCGAGAAAACTAGGAGACGTGTG 60.058 47.826 0.00 0.00 0.00 3.82
555 1084 1.986378 CTTACAGAAGTCGGCAAGTCG 59.014 52.381 0.00 0.00 0.00 4.18
604 1136 2.480555 GCACGTGCATGCACTACC 59.519 61.111 39.46 25.96 45.39 3.18
637 1169 4.225942 TGTCAAGAAACCTGGAGCATATCT 59.774 41.667 0.00 0.00 0.00 1.98
640 1172 5.131642 TCAAGAAACCTGGAGCATATCTCAT 59.868 40.000 0.00 0.00 43.70 2.90
641 1173 5.226194 AGAAACCTGGAGCATATCTCATC 57.774 43.478 0.00 0.00 43.70 2.92
642 1174 4.041444 AGAAACCTGGAGCATATCTCATCC 59.959 45.833 0.00 0.00 43.70 3.51
643 1175 2.264455 ACCTGGAGCATATCTCATCCC 58.736 52.381 0.00 0.00 43.70 3.85
644 1176 2.263545 CCTGGAGCATATCTCATCCCA 58.736 52.381 0.00 0.00 43.70 4.37
645 1177 2.236644 CCTGGAGCATATCTCATCCCAG 59.763 54.545 0.00 0.00 43.70 4.45
646 1178 3.171528 CTGGAGCATATCTCATCCCAGA 58.828 50.000 0.00 0.00 43.70 3.86
647 1179 3.775866 CTGGAGCATATCTCATCCCAGAT 59.224 47.826 0.00 0.00 43.70 2.90
648 1180 4.173594 TGGAGCATATCTCATCCCAGATT 58.826 43.478 0.00 0.00 43.70 2.40
649 1181 5.344566 TGGAGCATATCTCATCCCAGATTA 58.655 41.667 0.00 0.00 43.70 1.75
650 1182 5.786975 TGGAGCATATCTCATCCCAGATTAA 59.213 40.000 0.00 0.00 43.70 1.40
674 1206 5.982890 TTATCATATCGCAGTCCATCAGA 57.017 39.130 0.00 0.00 0.00 3.27
698 1235 2.391879 GGTAACACGCATACGATCCTC 58.608 52.381 0.00 0.00 43.93 3.71
709 1246 1.039068 ACGATCCTCTCATCAGCCAG 58.961 55.000 0.00 0.00 0.00 4.85
713 1250 0.616964 TCCTCTCATCAGCCAGCAGT 60.617 55.000 0.00 0.00 0.00 4.40
714 1251 0.179078 CCTCTCATCAGCCAGCAGTC 60.179 60.000 0.00 0.00 0.00 3.51
715 1252 0.535797 CTCTCATCAGCCAGCAGTCA 59.464 55.000 0.00 0.00 0.00 3.41
716 1253 0.248565 TCTCATCAGCCAGCAGTCAC 59.751 55.000 0.00 0.00 0.00 3.67
718 1255 0.397564 TCATCAGCCAGCAGTCACAA 59.602 50.000 0.00 0.00 0.00 3.33
737 1279 0.458543 AATCGTCGTCTTCAGCGCAT 60.459 50.000 11.47 0.00 0.00 4.73
747 1289 1.131126 CTTCAGCGCATCGAAAACCAT 59.869 47.619 11.47 0.00 0.00 3.55
751 1293 2.845967 CAGCGCATCGAAAACCATTTAC 59.154 45.455 11.47 0.00 0.00 2.01
755 1297 4.035017 CGCATCGAAAACCATTTACCATC 58.965 43.478 0.00 0.00 0.00 3.51
770 1312 9.825972 CCATTTACCATCAATACATTAATCGAC 57.174 33.333 0.00 0.00 0.00 4.20
786 1328 1.804396 CGACAATGGCAGGCAAACCA 61.804 55.000 0.00 0.00 41.06 3.67
792 1334 2.639286 GCAGGCAAACCACGACAG 59.361 61.111 0.00 0.00 39.06 3.51
814 1356 3.775202 CTTCTCACCCATCACGTAGAAG 58.225 50.000 6.17 6.17 35.47 2.85
829 1371 5.467902 CGTAGAAGAGAAACGTAGCTACT 57.532 43.478 21.20 2.91 32.16 2.57
830 1372 5.491973 CGTAGAAGAGAAACGTAGCTACTC 58.508 45.833 21.20 12.25 32.16 2.59
831 1373 5.291614 CGTAGAAGAGAAACGTAGCTACTCT 59.708 44.000 21.20 16.63 39.21 3.24
832 1374 6.183360 CGTAGAAGAGAAACGTAGCTACTCTT 60.183 42.308 21.20 20.32 46.16 2.85
833 1375 7.009999 CGTAGAAGAGAAACGTAGCTACTCTTA 59.990 40.741 21.20 6.73 44.41 2.10
834 1376 7.075674 AGAAGAGAAACGTAGCTACTCTTAC 57.924 40.000 21.20 14.57 44.41 2.34
835 1377 6.880529 AGAAGAGAAACGTAGCTACTCTTACT 59.119 38.462 21.20 16.08 44.41 2.24
836 1378 8.040132 AGAAGAGAAACGTAGCTACTCTTACTA 58.960 37.037 21.20 0.00 44.41 1.82
837 1379 7.538303 AGAGAAACGTAGCTACTCTTACTAC 57.462 40.000 21.20 5.90 34.85 2.73
838 1380 7.330262 AGAGAAACGTAGCTACTCTTACTACT 58.670 38.462 21.20 7.83 34.85 2.57
839 1381 7.823799 AGAGAAACGTAGCTACTCTTACTACTT 59.176 37.037 21.20 2.03 34.85 2.24
840 1382 7.973601 AGAAACGTAGCTACTCTTACTACTTC 58.026 38.462 21.20 9.81 35.25 3.01
841 1383 7.823799 AGAAACGTAGCTACTCTTACTACTTCT 59.176 37.037 21.20 11.50 35.25 2.85
842 1384 7.538303 AACGTAGCTACTCTTACTACTTCTC 57.462 40.000 21.20 0.00 35.25 2.87
843 1385 5.748152 ACGTAGCTACTCTTACTACTTCTCG 59.252 44.000 21.20 5.15 35.25 4.04
844 1386 5.976534 CGTAGCTACTCTTACTACTTCTCGA 59.023 44.000 21.20 0.00 35.25 4.04
845 1387 6.074888 CGTAGCTACTCTTACTACTTCTCGAC 60.075 46.154 21.20 0.00 35.25 4.20
871 1414 1.159713 TCACCTGCACACGCTTTCAG 61.160 55.000 0.00 0.00 39.64 3.02
872 1415 1.146041 ACCTGCACACGCTTTCAGA 59.854 52.632 0.00 0.00 39.64 3.27
873 1416 0.250467 ACCTGCACACGCTTTCAGAT 60.250 50.000 0.00 0.00 39.64 2.90
874 1417 1.001974 ACCTGCACACGCTTTCAGATA 59.998 47.619 0.00 0.00 39.64 1.98
875 1418 2.283298 CCTGCACACGCTTTCAGATAT 58.717 47.619 0.00 0.00 39.64 1.63
876 1419 3.118775 ACCTGCACACGCTTTCAGATATA 60.119 43.478 0.00 0.00 39.64 0.86
878 1421 4.025396 CCTGCACACGCTTTCAGATATAAG 60.025 45.833 0.00 0.00 39.64 1.73
883 1426 6.292061 GCACACGCTTTCAGATATAAGAAGAG 60.292 42.308 0.00 0.00 34.30 2.85
937 1481 2.616001 GGCGTATACCAGTCAAAACCCA 60.616 50.000 0.00 0.00 0.00 4.51
938 1482 2.417586 GCGTATACCAGTCAAAACCCAC 59.582 50.000 0.00 0.00 0.00 4.61
1002 1546 1.099295 ATGATGCTGCCCACGACATG 61.099 55.000 0.00 0.00 0.00 3.21
1021 1565 2.047465 AGTTGGAGCAGCAGAGCG 60.047 61.111 0.00 0.00 40.15 5.03
1038 1582 3.134458 GAGCGGAGGAAATAATCACAGG 58.866 50.000 0.00 0.00 0.00 4.00
1068 1612 2.109739 TCCGTGCGTGCTTGTTTGT 61.110 52.632 0.00 0.00 0.00 2.83
1069 1613 1.226547 CCGTGCGTGCTTGTTTGTT 60.227 52.632 0.00 0.00 0.00 2.83
1070 1614 0.800300 CCGTGCGTGCTTGTTTGTTT 60.800 50.000 0.00 0.00 0.00 2.83
1071 1615 0.294304 CGTGCGTGCTTGTTTGTTTG 59.706 50.000 0.00 0.00 0.00 2.93
1072 1616 0.644843 GTGCGTGCTTGTTTGTTTGG 59.355 50.000 0.00 0.00 0.00 3.28
1073 1617 0.528017 TGCGTGCTTGTTTGTTTGGA 59.472 45.000 0.00 0.00 0.00 3.53
1087 1634 1.480212 TTTGGAGCTTGGAGGCGAGA 61.480 55.000 0.00 0.00 37.29 4.04
1105 1652 3.623960 CGAGACTAGGAAGAAGATGACGT 59.376 47.826 0.00 0.00 0.00 4.34
1343 1890 4.140599 AGCGGCAGGAAGAGCTCG 62.141 66.667 8.37 0.00 34.48 5.03
1373 1920 3.007398 TGGTTGGGCAATGTAAATGTTCC 59.993 43.478 0.00 0.00 0.00 3.62
1388 1935 1.343789 TGTTCCGTGGATTCGTTGGTA 59.656 47.619 0.00 0.00 0.00 3.25
1395 1949 4.142403 CCGTGGATTCGTTGGTAACTACTA 60.142 45.833 0.00 0.00 40.40 1.82
1397 1951 6.038356 CGTGGATTCGTTGGTAACTACTATT 58.962 40.000 0.00 0.00 40.40 1.73
1457 2021 5.684626 GTGAGCGGATTGATGAATTCATTTC 59.315 40.000 21.57 17.10 36.57 2.17
1532 2138 7.064966 TCGTCAAAGTATCGTAGAGTGTGATTA 59.935 37.037 0.00 0.00 43.63 1.75
1537 2143 3.835378 TCGTAGAGTGTGATTACGCAA 57.165 42.857 3.84 0.00 39.81 4.85
1555 2161 5.229423 ACGCAATGTGTTTAGCATCAAATT 58.771 33.333 0.00 0.00 0.00 1.82
1571 2177 7.939588 AGCATCAAATTAAATACTACTCCCTCC 59.060 37.037 0.00 0.00 0.00 4.30
1572 2178 7.095187 GCATCAAATTAAATACTACTCCCTCCG 60.095 40.741 0.00 0.00 0.00 4.63
1573 2179 7.427989 TCAAATTAAATACTACTCCCTCCGT 57.572 36.000 0.00 0.00 0.00 4.69
1574 2180 7.854337 TCAAATTAAATACTACTCCCTCCGTT 58.146 34.615 0.00 0.00 0.00 4.44
1575 2181 7.983484 TCAAATTAAATACTACTCCCTCCGTTC 59.017 37.037 0.00 0.00 0.00 3.95
1576 2182 5.505173 TTAAATACTACTCCCTCCGTTCG 57.495 43.478 0.00 0.00 0.00 3.95
1577 2183 1.978454 ATACTACTCCCTCCGTTCGG 58.022 55.000 4.74 4.74 0.00 4.30
1578 2184 0.911769 TACTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
1579 2185 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1580 2186 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
1581 2187 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
1582 2188 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1583 2189 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1584 2190 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1585 2191 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1586 2192 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1587 2193 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1588 2194 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1589 2195 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
1590 2196 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
1591 2197 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
1592 2198 3.495377 CCGTTCGGAATTACTTGTCACAA 59.505 43.478 5.19 0.00 0.00 3.33
1593 2199 4.024725 CCGTTCGGAATTACTTGTCACAAA 60.025 41.667 5.19 0.00 0.00 2.83
1594 2200 5.503498 CGTTCGGAATTACTTGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
1595 2201 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
1596 2202 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
1597 2203 7.357206 CGTTCGGAATTACTTGTCACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
1598 2204 6.442952 TCGGAATTACTTGTCACAAAAATGG 58.557 36.000 0.00 0.00 0.00 3.16
1599 2205 6.263392 TCGGAATTACTTGTCACAAAAATGGA 59.737 34.615 0.00 0.00 0.00 3.41
1600 2206 7.040062 TCGGAATTACTTGTCACAAAAATGGAT 60.040 33.333 0.00 0.00 0.00 3.41
1601 2207 8.240682 CGGAATTACTTGTCACAAAAATGGATA 58.759 33.333 0.00 0.00 0.00 2.59
1602 2208 9.921637 GGAATTACTTGTCACAAAAATGGATAA 57.078 29.630 0.00 0.00 0.00 1.75
1608 2214 9.054922 ACTTGTCACAAAAATGGATAAAAATGG 57.945 29.630 0.00 0.00 0.00 3.16
1609 2215 9.270640 CTTGTCACAAAAATGGATAAAAATGGA 57.729 29.630 0.00 0.00 0.00 3.41
1610 2216 9.790344 TTGTCACAAAAATGGATAAAAATGGAT 57.210 25.926 0.00 0.00 0.00 3.41
1611 2217 9.217278 TGTCACAAAAATGGATAAAAATGGATG 57.783 29.630 0.00 0.00 0.00 3.51
1612 2218 9.218440 GTCACAAAAATGGATAAAAATGGATGT 57.782 29.630 0.00 0.00 0.00 3.06
1670 2276 7.737972 TTTTTGACGAGTAATTCTGAATGGA 57.262 32.000 3.22 0.00 0.00 3.41
1671 2277 6.968131 TTTGACGAGTAATTCTGAATGGAG 57.032 37.500 3.22 0.00 0.00 3.86
1672 2278 5.011090 TGACGAGTAATTCTGAATGGAGG 57.989 43.478 3.22 0.00 0.00 4.30
1673 2279 4.141937 TGACGAGTAATTCTGAATGGAGGG 60.142 45.833 3.22 0.00 0.00 4.30
1674 2280 4.030913 ACGAGTAATTCTGAATGGAGGGA 58.969 43.478 3.22 0.00 0.00 4.20
1675 2281 4.100189 ACGAGTAATTCTGAATGGAGGGAG 59.900 45.833 3.22 0.00 0.00 4.30
1676 2282 4.100189 CGAGTAATTCTGAATGGAGGGAGT 59.900 45.833 3.22 0.00 0.00 3.85
1677 2283 5.302059 CGAGTAATTCTGAATGGAGGGAGTA 59.698 44.000 3.22 0.00 0.00 2.59
1678 2284 6.487299 AGTAATTCTGAATGGAGGGAGTAC 57.513 41.667 3.22 0.70 0.00 2.73
1679 2285 4.779993 AATTCTGAATGGAGGGAGTACC 57.220 45.455 3.22 0.00 40.67 3.34
1680 2286 2.940514 TCTGAATGGAGGGAGTACCA 57.059 50.000 0.00 0.00 43.89 3.25
1681 2287 2.467880 TCTGAATGGAGGGAGTACCAC 58.532 52.381 0.00 0.00 43.89 4.16
1682 2288 2.187958 CTGAATGGAGGGAGTACCACA 58.812 52.381 0.00 0.00 43.89 4.17
1683 2289 2.169352 CTGAATGGAGGGAGTACCACAG 59.831 54.545 0.00 0.00 43.89 3.66
1684 2290 2.225522 TGAATGGAGGGAGTACCACAGA 60.226 50.000 0.00 0.00 43.89 3.41
1685 2291 2.166907 ATGGAGGGAGTACCACAGAG 57.833 55.000 0.00 0.00 43.89 3.35
1686 2292 1.081481 TGGAGGGAGTACCACAGAGA 58.919 55.000 0.00 0.00 43.89 3.10
1687 2293 1.272536 TGGAGGGAGTACCACAGAGAC 60.273 57.143 0.00 0.00 43.89 3.36
1688 2294 1.272536 GGAGGGAGTACCACAGAGACA 60.273 57.143 0.00 0.00 43.89 3.41
1689 2295 2.624557 GGAGGGAGTACCACAGAGACAT 60.625 54.545 0.00 0.00 43.89 3.06
1690 2296 3.372784 GGAGGGAGTACCACAGAGACATA 60.373 52.174 0.00 0.00 43.89 2.29
1691 2297 3.633065 GAGGGAGTACCACAGAGACATAC 59.367 52.174 0.00 0.00 43.89 2.39
1692 2298 3.269906 AGGGAGTACCACAGAGACATACT 59.730 47.826 0.00 0.00 43.89 2.12
1693 2299 3.633065 GGGAGTACCACAGAGACATACTC 59.367 52.174 0.00 0.00 41.61 2.59
1694 2300 4.904253 GAGTACCACAGAGACATACTCC 57.096 50.000 0.00 0.00 45.96 3.85
1695 2301 3.633065 GAGTACCACAGAGACATACTCCC 59.367 52.174 0.00 0.00 45.96 4.30
1696 2302 2.930109 ACCACAGAGACATACTCCCT 57.070 50.000 0.00 0.00 45.96 4.20
1697 2303 2.741145 ACCACAGAGACATACTCCCTC 58.259 52.381 0.00 0.00 45.96 4.30
1698 2304 2.035632 CCACAGAGACATACTCCCTCC 58.964 57.143 0.00 0.00 45.96 4.30
1699 2305 1.678627 CACAGAGACATACTCCCTCCG 59.321 57.143 0.00 0.00 45.96 4.63
1700 2306 1.285373 ACAGAGACATACTCCCTCCGT 59.715 52.381 0.00 0.00 45.96 4.69
1701 2307 1.950909 CAGAGACATACTCCCTCCGTC 59.049 57.143 0.00 0.00 45.96 4.79
1702 2308 1.133730 AGAGACATACTCCCTCCGTCC 60.134 57.143 0.00 0.00 45.96 4.79
1703 2309 0.106116 AGACATACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
1704 2310 0.396695 GACATACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
1705 2311 0.264955 ACATACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
1706 2312 1.502039 ACATACTCCCTCCGTCCCATA 59.498 52.381 0.00 0.00 0.00 2.74
1707 2313 2.090943 ACATACTCCCTCCGTCCCATAA 60.091 50.000 0.00 0.00 0.00 1.90
1708 2314 3.173965 CATACTCCCTCCGTCCCATAAT 58.826 50.000 0.00 0.00 0.00 1.28
1709 2315 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1710 2316 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
1711 2317 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1712 2318 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
1713 2319 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
1714 2320 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
1715 2321 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
1717 2323 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
1718 2324 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
1719 2325 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
1720 2326 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
1721 2327 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
1765 2371 8.700722 TTTTGACACTAGTAAGACGTTTAACA 57.299 30.769 0.00 0.00 0.00 2.41
1766 2372 8.876275 TTTGACACTAGTAAGACGTTTAACAT 57.124 30.769 0.00 0.00 0.00 2.71
1767 2373 8.511465 TTGACACTAGTAAGACGTTTAACATC 57.489 34.615 0.00 0.00 0.00 3.06
1768 2374 7.879070 TGACACTAGTAAGACGTTTAACATCT 58.121 34.615 0.00 0.00 0.00 2.90
1769 2375 8.355169 TGACACTAGTAAGACGTTTAACATCTT 58.645 33.333 11.14 11.14 36.64 2.40
1770 2376 9.831737 GACACTAGTAAGACGTTTAACATCTTA 57.168 33.333 9.20 9.20 34.55 2.10
1830 2436 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
1831 2437 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
1832 2438 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
1833 2439 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
1834 2440 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
1835 2441 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
1951 2557 8.978874 TGTGATTATGTTATGCCAAATACTCT 57.021 30.769 0.00 0.00 0.00 3.24
1952 2558 9.056005 TGTGATTATGTTATGCCAAATACTCTC 57.944 33.333 0.00 0.00 0.00 3.20
1953 2559 9.277783 GTGATTATGTTATGCCAAATACTCTCT 57.722 33.333 0.00 0.00 0.00 3.10
1954 2560 9.494271 TGATTATGTTATGCCAAATACTCTCTC 57.506 33.333 0.00 0.00 0.00 3.20
1955 2561 8.854614 ATTATGTTATGCCAAATACTCTCTCC 57.145 34.615 0.00 0.00 0.00 3.71
1956 2562 4.693283 TGTTATGCCAAATACTCTCTCCG 58.307 43.478 0.00 0.00 0.00 4.63
1957 2563 4.161565 TGTTATGCCAAATACTCTCTCCGT 59.838 41.667 0.00 0.00 0.00 4.69
1958 2564 3.914426 ATGCCAAATACTCTCTCCGTT 57.086 42.857 0.00 0.00 0.00 4.44
1959 2565 2.972625 TGCCAAATACTCTCTCCGTTG 58.027 47.619 0.00 0.00 0.00 4.10
1960 2566 1.666189 GCCAAATACTCTCTCCGTTGC 59.334 52.381 0.00 0.00 0.00 4.17
1961 2567 2.678190 GCCAAATACTCTCTCCGTTGCT 60.678 50.000 0.00 0.00 0.00 3.91
1962 2568 3.430374 GCCAAATACTCTCTCCGTTGCTA 60.430 47.826 0.00 0.00 0.00 3.49
1963 2569 4.755411 CCAAATACTCTCTCCGTTGCTAA 58.245 43.478 0.00 0.00 0.00 3.09
1964 2570 5.175859 CCAAATACTCTCTCCGTTGCTAAA 58.824 41.667 0.00 0.00 0.00 1.85
1965 2571 5.817816 CCAAATACTCTCTCCGTTGCTAAAT 59.182 40.000 0.00 0.00 0.00 1.40
1966 2572 6.984474 CCAAATACTCTCTCCGTTGCTAAATA 59.016 38.462 0.00 0.00 0.00 1.40
1967 2573 7.657761 CCAAATACTCTCTCCGTTGCTAAATAT 59.342 37.037 0.00 0.00 0.00 1.28
1968 2574 9.046296 CAAATACTCTCTCCGTTGCTAAATATT 57.954 33.333 0.00 0.00 0.00 1.28
1969 2575 9.614792 AAATACTCTCTCCGTTGCTAAATATTT 57.385 29.630 5.89 5.89 0.00 1.40
1970 2576 6.910536 ACTCTCTCCGTTGCTAAATATTTG 57.089 37.500 11.05 2.59 0.00 2.32
1971 2577 6.407202 ACTCTCTCCGTTGCTAAATATTTGT 58.593 36.000 11.05 0.00 0.00 2.83
1972 2578 6.535508 ACTCTCTCCGTTGCTAAATATTTGTC 59.464 38.462 11.05 3.17 0.00 3.18
1973 2579 6.640518 TCTCTCCGTTGCTAAATATTTGTCT 58.359 36.000 11.05 0.00 0.00 3.41
1974 2580 7.103641 TCTCTCCGTTGCTAAATATTTGTCTT 58.896 34.615 11.05 0.00 0.00 3.01
1975 2581 7.606456 TCTCTCCGTTGCTAAATATTTGTCTTT 59.394 33.333 11.05 0.00 0.00 2.52
1976 2582 8.106247 TCTCCGTTGCTAAATATTTGTCTTTT 57.894 30.769 11.05 0.00 0.00 2.27
1977 2583 8.573035 TCTCCGTTGCTAAATATTTGTCTTTTT 58.427 29.630 11.05 0.00 0.00 1.94
1978 2584 9.834628 CTCCGTTGCTAAATATTTGTCTTTTTA 57.165 29.630 11.05 0.00 0.00 1.52
1979 2585 9.834628 TCCGTTGCTAAATATTTGTCTTTTTAG 57.165 29.630 11.05 0.00 35.65 1.85
1980 2586 9.834628 CCGTTGCTAAATATTTGTCTTTTTAGA 57.165 29.630 11.05 0.00 34.90 2.10
2005 2611 9.916397 GAGATTTTAAATGGACTAACACATACG 57.084 33.333 0.00 0.00 0.00 3.06
2006 2612 9.661563 AGATTTTAAATGGACTAACACATACGA 57.338 29.630 0.00 0.00 0.00 3.43
2011 2617 9.872721 TTAAATGGACTAACACATACGAATGTA 57.127 29.630 0.00 0.00 44.70 2.29
2012 2618 8.958119 AAATGGACTAACACATACGAATGTAT 57.042 30.769 0.00 0.00 44.70 2.29
2065 2671 9.485206 ACTTATTTTGTTTCGTATGTAGTCACT 57.515 29.630 0.00 0.00 0.00 3.41
2068 2674 7.542534 TTTTGTTTCGTATGTAGTCACTTGT 57.457 32.000 0.00 0.00 0.00 3.16
2069 2675 7.542534 TTTGTTTCGTATGTAGTCACTTGTT 57.457 32.000 0.00 0.00 0.00 2.83
2070 2676 6.519353 TGTTTCGTATGTAGTCACTTGTTG 57.481 37.500 0.00 0.00 0.00 3.33
2071 2677 6.274579 TGTTTCGTATGTAGTCACTTGTTGA 58.725 36.000 0.00 0.00 0.00 3.18
2072 2678 6.757478 TGTTTCGTATGTAGTCACTTGTTGAA 59.243 34.615 0.00 0.00 35.39 2.69
2073 2679 7.278203 TGTTTCGTATGTAGTCACTTGTTGAAA 59.722 33.333 0.00 0.00 35.39 2.69
2074 2680 7.956420 TTCGTATGTAGTCACTTGTTGAAAT 57.044 32.000 0.00 0.00 35.39 2.17
2075 2681 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
2076 2682 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
2077 2683 7.870954 TCGTATGTAGTCACTTGTTGAAATCTT 59.129 33.333 0.00 0.00 35.39 2.40
2078 2684 8.495949 CGTATGTAGTCACTTGTTGAAATCTTT 58.504 33.333 0.00 0.00 35.39 2.52
2081 2687 9.778741 ATGTAGTCACTTGTTGAAATCTTTAGA 57.221 29.630 0.00 0.00 35.39 2.10
2082 2688 9.607988 TGTAGTCACTTGTTGAAATCTTTAGAA 57.392 29.630 0.00 0.00 35.39 2.10
2085 2691 9.396022 AGTCACTTGTTGAAATCTTTAGAAAGA 57.604 29.630 7.15 7.15 41.72 2.52
2086 2692 9.439537 GTCACTTGTTGAAATCTTTAGAAAGAC 57.560 33.333 6.85 0.00 40.95 3.01
2087 2693 9.173021 TCACTTGTTGAAATCTTTAGAAAGACA 57.827 29.630 6.85 0.00 46.80 3.41
2088 2694 9.787532 CACTTGTTGAAATCTTTAGAAAGACAA 57.212 29.630 6.85 4.98 46.80 3.18
2105 2711 8.947115 AGAAAGACAAATATTTAGGAACGAAGG 58.053 33.333 0.00 0.00 0.00 3.46
2106 2712 8.857694 AAAGACAAATATTTAGGAACGAAGGA 57.142 30.769 0.00 0.00 0.00 3.36
2107 2713 8.857694 AAGACAAATATTTAGGAACGAAGGAA 57.142 30.769 0.00 0.00 0.00 3.36
2108 2714 8.494016 AGACAAATATTTAGGAACGAAGGAAG 57.506 34.615 0.00 0.00 0.00 3.46
2109 2715 8.101419 AGACAAATATTTAGGAACGAAGGAAGT 58.899 33.333 0.00 0.00 0.00 3.01
2110 2716 9.374838 GACAAATATTTAGGAACGAAGGAAGTA 57.625 33.333 0.00 0.00 0.00 2.24
2111 2717 9.159364 ACAAATATTTAGGAACGAAGGAAGTAC 57.841 33.333 0.00 0.00 0.00 2.73
2126 2732 7.330946 CGAAGGAAGTACATAACATTTCACTGA 59.669 37.037 0.00 0.00 0.00 3.41
2127 2733 9.167311 GAAGGAAGTACATAACATTTCACTGAT 57.833 33.333 0.00 0.00 0.00 2.90
2146 2752 9.973450 TCACTGATCTAAATGCTCTTATACTTC 57.027 33.333 0.00 0.00 0.00 3.01
2199 2805 1.680207 TCTGCAGTCCATCATCTCGAG 59.320 52.381 14.67 5.93 0.00 4.04
2264 2870 7.558161 TCAAGATTGATGCACTAGTTTATGG 57.442 36.000 0.00 0.00 31.01 2.74
2292 2898 3.332485 ACCCTTAATTGCTACACTTGGGA 59.668 43.478 0.00 0.00 36.20 4.37
2304 2910 0.757935 ACTTGGGATCCATGCATGCC 60.758 55.000 21.69 16.61 34.84 4.40
2306 2912 0.757561 TTGGGATCCATGCATGCCAG 60.758 55.000 21.69 8.13 44.37 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.197721 GTTGCAACATCCGTCTTCCTG 59.802 52.381 24.52 0.00 0.00 3.86
1 2 1.523758 GTTGCAACATCCGTCTTCCT 58.476 50.000 24.52 0.00 0.00 3.36
2 3 0.521735 GGTTGCAACATCCGTCTTCC 59.478 55.000 29.55 5.79 0.00 3.46
3 4 1.197721 CAGGTTGCAACATCCGTCTTC 59.802 52.381 29.55 9.95 0.00 2.87
4 5 1.238439 CAGGTTGCAACATCCGTCTT 58.762 50.000 29.55 3.06 0.00 3.01
5 6 0.108585 ACAGGTTGCAACATCCGTCT 59.891 50.000 29.55 14.18 0.00 4.18
6 7 1.732259 CTACAGGTTGCAACATCCGTC 59.268 52.381 29.55 12.10 0.00 4.79
7 8 1.346395 TCTACAGGTTGCAACATCCGT 59.654 47.619 29.55 19.86 0.00 4.69
8 9 2.093306 TCTACAGGTTGCAACATCCG 57.907 50.000 29.55 15.16 0.00 4.18
9 10 4.846779 TTTTCTACAGGTTGCAACATCC 57.153 40.909 29.55 13.94 0.00 3.51
45 46 1.199327 CTGACCTTGCAGCATTCTGTG 59.801 52.381 0.00 0.00 42.29 3.66
46 47 1.072806 TCTGACCTTGCAGCATTCTGT 59.927 47.619 0.00 0.00 42.29 3.41
47 48 1.738350 CTCTGACCTTGCAGCATTCTG 59.262 52.381 0.00 0.00 43.16 3.02
48 49 1.350351 ACTCTGACCTTGCAGCATTCT 59.650 47.619 0.00 0.00 35.86 2.40
49 50 1.736681 GACTCTGACCTTGCAGCATTC 59.263 52.381 0.00 0.00 35.86 2.67
50 51 1.818642 GACTCTGACCTTGCAGCATT 58.181 50.000 0.00 0.00 35.86 3.56
51 52 0.390866 CGACTCTGACCTTGCAGCAT 60.391 55.000 0.00 0.00 35.86 3.79
52 53 1.005748 CGACTCTGACCTTGCAGCA 60.006 57.895 0.00 0.00 35.86 4.41
53 54 0.601311 AACGACTCTGACCTTGCAGC 60.601 55.000 0.00 0.00 35.86 5.25
54 55 1.528586 CAAACGACTCTGACCTTGCAG 59.471 52.381 0.00 0.00 37.24 4.41
55 56 1.581934 CAAACGACTCTGACCTTGCA 58.418 50.000 0.00 0.00 0.00 4.08
56 57 0.868406 CCAAACGACTCTGACCTTGC 59.132 55.000 0.00 0.00 0.00 4.01
57 58 2.240493 ACCAAACGACTCTGACCTTG 57.760 50.000 0.00 0.00 0.00 3.61
58 59 3.203716 GAAACCAAACGACTCTGACCTT 58.796 45.455 0.00 0.00 0.00 3.50
59 60 2.484947 GGAAACCAAACGACTCTGACCT 60.485 50.000 0.00 0.00 0.00 3.85
60 61 1.871676 GGAAACCAAACGACTCTGACC 59.128 52.381 0.00 0.00 0.00 4.02
61 62 2.835027 AGGAAACCAAACGACTCTGAC 58.165 47.619 0.00 0.00 0.00 3.51
62 63 4.100498 AGTTAGGAAACCAAACGACTCTGA 59.900 41.667 0.00 0.00 36.15 3.27
63 64 4.377897 AGTTAGGAAACCAAACGACTCTG 58.622 43.478 0.00 0.00 36.15 3.35
64 65 4.100498 TGAGTTAGGAAACCAAACGACTCT 59.900 41.667 0.00 0.00 36.15 3.24
65 66 4.374399 TGAGTTAGGAAACCAAACGACTC 58.626 43.478 0.00 0.00 36.15 3.36
66 67 4.377897 CTGAGTTAGGAAACCAAACGACT 58.622 43.478 0.00 0.00 36.15 4.18
67 68 3.059120 GCTGAGTTAGGAAACCAAACGAC 60.059 47.826 0.00 0.00 36.15 4.34
68 69 3.135994 GCTGAGTTAGGAAACCAAACGA 58.864 45.455 0.00 0.00 36.15 3.85
69 70 3.139077 AGCTGAGTTAGGAAACCAAACG 58.861 45.455 0.00 0.00 36.15 3.60
124 643 0.992802 GCTTTTGACGACTCTAGCCG 59.007 55.000 0.00 0.00 0.00 5.52
147 666 3.537580 TGTGTCTTTCCAAACGCTAAGT 58.462 40.909 0.00 0.00 0.00 2.24
151 670 3.859411 TTTTGTGTCTTTCCAAACGCT 57.141 38.095 0.00 0.00 30.74 5.07
163 682 6.345487 GGCAGTTAACGCTTTAATTTTGTGTC 60.345 38.462 17.59 0.00 29.82 3.67
176 695 1.336795 GGCATTTTGGCAGTTAACGCT 60.337 47.619 17.59 0.00 43.14 5.07
199 718 0.655733 ACTGGCAAAAGACACGAACG 59.344 50.000 0.00 0.00 0.00 3.95
208 727 1.580845 CTCTCCCGCACTGGCAAAAG 61.581 60.000 0.00 0.00 41.24 2.27
209 728 1.600636 CTCTCCCGCACTGGCAAAA 60.601 57.895 0.00 0.00 41.24 2.44
244 763 0.929615 CACAAAAAGCTTGCCAACGG 59.070 50.000 0.00 0.00 0.00 4.44
246 765 0.657312 GCCACAAAAAGCTTGCCAAC 59.343 50.000 0.00 0.00 0.00 3.77
247 766 0.809241 CGCCACAAAAAGCTTGCCAA 60.809 50.000 0.00 0.00 0.00 4.52
255 774 2.101750 ACCCTTTAACCGCCACAAAAAG 59.898 45.455 0.00 0.00 0.00 2.27
285 804 6.006275 AGGAAAATAAAGCTAGCATCTGGA 57.994 37.500 18.83 0.00 0.00 3.86
288 807 7.346471 TGGTTAGGAAAATAAAGCTAGCATCT 58.654 34.615 18.83 2.82 0.00 2.90
332 851 2.894387 CGCAGCTCCTAGCCTTGC 60.894 66.667 3.72 3.72 43.77 4.01
348 867 1.062587 CGTTTGGATCTTAGGCAAGCG 59.937 52.381 4.19 4.19 0.00 4.68
367 886 0.387622 TACGAACAAGCCGAAGTCCG 60.388 55.000 0.00 0.00 38.18 4.79
368 887 1.787012 TTACGAACAAGCCGAAGTCC 58.213 50.000 0.00 0.00 0.00 3.85
369 888 3.865224 TTTTACGAACAAGCCGAAGTC 57.135 42.857 0.00 0.00 0.00 3.01
370 889 3.810941 TGATTTTACGAACAAGCCGAAGT 59.189 39.130 0.00 0.00 0.00 3.01
371 890 4.398549 TGATTTTACGAACAAGCCGAAG 57.601 40.909 0.00 0.00 0.00 3.79
372 891 6.483385 TTATGATTTTACGAACAAGCCGAA 57.517 33.333 0.00 0.00 0.00 4.30
373 892 6.508880 CGATTATGATTTTACGAACAAGCCGA 60.509 38.462 0.00 0.00 0.00 5.54
374 893 5.615581 CGATTATGATTTTACGAACAAGCCG 59.384 40.000 0.00 0.00 0.00 5.52
383 902 6.839301 CGACCAGTTTCGATTATGATTTTACG 59.161 38.462 0.00 0.00 41.78 3.18
414 933 6.015688 TGACGTCCTTGTTAGAGACAAATAGT 60.016 38.462 14.12 0.00 46.99 2.12
416 935 6.015688 AGTGACGTCCTTGTTAGAGACAAATA 60.016 38.462 14.12 0.00 46.99 1.40
418 937 4.098960 AGTGACGTCCTTGTTAGAGACAAA 59.901 41.667 14.12 0.00 46.99 2.83
419 938 3.635373 AGTGACGTCCTTGTTAGAGACAA 59.365 43.478 14.12 0.00 45.70 3.18
421 940 3.919223 AGTGACGTCCTTGTTAGAGAC 57.081 47.619 14.12 0.00 0.00 3.36
431 958 0.882474 CGGAGAGAAAGTGACGTCCT 59.118 55.000 14.12 6.92 0.00 3.85
440 967 3.004734 ACATTGTTTTGCCGGAGAGAAAG 59.995 43.478 5.05 0.00 0.00 2.62
477 1006 2.360165 AGTACGACACGTCTCCAAGTTT 59.640 45.455 0.00 0.00 41.54 2.66
478 1007 1.952296 AGTACGACACGTCTCCAAGTT 59.048 47.619 0.00 0.00 41.54 2.66
479 1008 1.534595 GAGTACGACACGTCTCCAAGT 59.465 52.381 0.00 0.00 41.54 3.16
493 1022 4.492247 CGTCTCCTAGTTTTCTCGAGTACG 60.492 50.000 13.13 0.00 41.26 3.67
497 1026 3.188873 ACACGTCTCCTAGTTTTCTCGAG 59.811 47.826 5.93 5.93 0.00 4.04
539 1068 1.337821 GTACGACTTGCCGACTTCTG 58.662 55.000 0.00 0.00 0.00 3.02
555 1084 2.597305 CGTCGTTAGCTCATGTTGGTAC 59.403 50.000 0.00 0.00 0.00 3.34
595 1127 4.814900 CGAAGCTCGGTAGTGCAT 57.185 55.556 0.00 0.00 39.17 3.96
637 1169 9.330063 GCGATATGATAATTTAATCTGGGATGA 57.670 33.333 0.00 0.00 0.00 2.92
640 1172 8.321353 ACTGCGATATGATAATTTAATCTGGGA 58.679 33.333 0.00 0.00 0.00 4.37
641 1173 8.498054 ACTGCGATATGATAATTTAATCTGGG 57.502 34.615 0.00 0.00 0.00 4.45
642 1174 8.607459 GGACTGCGATATGATAATTTAATCTGG 58.393 37.037 0.00 0.00 0.00 3.86
643 1175 9.154847 TGGACTGCGATATGATAATTTAATCTG 57.845 33.333 0.00 0.00 0.00 2.90
644 1176 9.896645 ATGGACTGCGATATGATAATTTAATCT 57.103 29.630 0.00 0.00 0.00 2.40
646 1178 9.671279 TGATGGACTGCGATATGATAATTTAAT 57.329 29.630 0.00 0.00 0.00 1.40
647 1179 9.154847 CTGATGGACTGCGATATGATAATTTAA 57.845 33.333 0.00 0.00 0.00 1.52
648 1180 8.531146 TCTGATGGACTGCGATATGATAATTTA 58.469 33.333 0.00 0.00 0.00 1.40
649 1181 7.332926 GTCTGATGGACTGCGATATGATAATTT 59.667 37.037 0.00 0.00 41.46 1.82
650 1182 6.815641 GTCTGATGGACTGCGATATGATAATT 59.184 38.462 0.00 0.00 41.46 1.40
674 1206 0.889994 TCGTATGCGTGTTACCCTGT 59.110 50.000 2.37 0.00 39.49 4.00
679 1211 3.242969 TGAGAGGATCGTATGCGTGTTAC 60.243 47.826 2.37 0.00 42.67 2.50
698 1235 0.036671 TGTGACTGCTGGCTGATGAG 60.037 55.000 6.47 0.00 0.00 2.90
709 1246 1.419374 AGACGACGATTTGTGACTGC 58.581 50.000 0.00 0.00 0.00 4.40
713 1250 2.058798 GCTGAAGACGACGATTTGTGA 58.941 47.619 0.00 0.00 0.00 3.58
714 1251 1.201704 CGCTGAAGACGACGATTTGTG 60.202 52.381 0.00 0.00 0.00 3.33
715 1252 1.060713 CGCTGAAGACGACGATTTGT 58.939 50.000 0.00 0.00 0.00 2.83
716 1253 0.246912 GCGCTGAAGACGACGATTTG 60.247 55.000 0.00 0.00 0.00 2.32
718 1255 0.458543 ATGCGCTGAAGACGACGATT 60.459 50.000 9.73 0.00 0.00 3.34
737 1279 7.689446 TGTATTGATGGTAAATGGTTTTCGA 57.311 32.000 0.00 0.00 0.00 3.71
751 1293 6.803320 GCCATTGTCGATTAATGTATTGATGG 59.197 38.462 18.25 1.35 34.51 3.51
755 1297 6.144854 CCTGCCATTGTCGATTAATGTATTG 58.855 40.000 18.25 8.67 34.51 1.90
770 1312 1.373246 CGTGGTTTGCCTGCCATTG 60.373 57.895 0.00 0.00 37.09 2.82
786 1328 0.247736 GATGGGTGAGAAGCTGTCGT 59.752 55.000 0.00 0.00 0.00 4.34
792 1334 1.476891 TCTACGTGATGGGTGAGAAGC 59.523 52.381 0.00 0.00 0.00 3.86
814 1356 7.538303 AGTAGTAAGAGTAGCTACGTTTCTC 57.462 40.000 17.99 9.80 39.80 2.87
824 1366 5.118286 AGGTCGAGAAGTAGTAAGAGTAGC 58.882 45.833 0.00 0.00 0.00 3.58
825 1367 6.339730 TGAGGTCGAGAAGTAGTAAGAGTAG 58.660 44.000 0.00 0.00 0.00 2.57
826 1368 6.291648 TGAGGTCGAGAAGTAGTAAGAGTA 57.708 41.667 0.00 0.00 0.00 2.59
827 1369 5.163281 TGAGGTCGAGAAGTAGTAAGAGT 57.837 43.478 0.00 0.00 0.00 3.24
828 1370 6.497785 TTTGAGGTCGAGAAGTAGTAAGAG 57.502 41.667 0.00 0.00 0.00 2.85
829 1371 6.657966 TGATTTGAGGTCGAGAAGTAGTAAGA 59.342 38.462 0.00 0.00 0.00 2.10
830 1372 6.748198 GTGATTTGAGGTCGAGAAGTAGTAAG 59.252 42.308 0.00 0.00 0.00 2.34
831 1373 6.349944 GGTGATTTGAGGTCGAGAAGTAGTAA 60.350 42.308 0.00 0.00 0.00 2.24
832 1374 5.125097 GGTGATTTGAGGTCGAGAAGTAGTA 59.875 44.000 0.00 0.00 0.00 1.82
833 1375 4.082136 GGTGATTTGAGGTCGAGAAGTAGT 60.082 45.833 0.00 0.00 0.00 2.73
834 1376 4.158764 AGGTGATTTGAGGTCGAGAAGTAG 59.841 45.833 0.00 0.00 0.00 2.57
835 1377 4.082190 CAGGTGATTTGAGGTCGAGAAGTA 60.082 45.833 0.00 0.00 0.00 2.24
836 1378 2.900546 AGGTGATTTGAGGTCGAGAAGT 59.099 45.455 0.00 0.00 0.00 3.01
837 1379 3.257393 CAGGTGATTTGAGGTCGAGAAG 58.743 50.000 0.00 0.00 0.00 2.85
838 1380 2.612972 GCAGGTGATTTGAGGTCGAGAA 60.613 50.000 0.00 0.00 0.00 2.87
839 1381 1.066858 GCAGGTGATTTGAGGTCGAGA 60.067 52.381 0.00 0.00 0.00 4.04
840 1382 1.338105 TGCAGGTGATTTGAGGTCGAG 60.338 52.381 0.00 0.00 0.00 4.04
841 1383 0.684535 TGCAGGTGATTTGAGGTCGA 59.315 50.000 0.00 0.00 0.00 4.20
842 1384 0.798776 GTGCAGGTGATTTGAGGTCG 59.201 55.000 0.00 0.00 0.00 4.79
843 1385 1.537202 GTGTGCAGGTGATTTGAGGTC 59.463 52.381 0.00 0.00 0.00 3.85
844 1386 1.609208 GTGTGCAGGTGATTTGAGGT 58.391 50.000 0.00 0.00 0.00 3.85
845 1387 0.518636 CGTGTGCAGGTGATTTGAGG 59.481 55.000 0.00 0.00 0.00 3.86
883 1426 6.183360 CACATCTTAGTGGATGGAAATGTTCC 60.183 42.308 8.91 0.00 45.11 3.62
905 1448 0.452987 GTATACGCCACGAGTCCACA 59.547 55.000 0.00 0.00 0.00 4.17
937 1481 1.757306 CCAGAGTTGACCTGGCAGT 59.243 57.895 14.43 1.17 43.93 4.40
938 1482 4.709840 CCAGAGTTGACCTGGCAG 57.290 61.111 7.75 7.75 43.93 4.85
1002 1546 1.744741 GCTCTGCTGCTCCAACTCC 60.745 63.158 0.00 0.00 0.00 3.85
1021 1565 6.709846 CAGATTCTCCTGTGATTATTTCCTCC 59.290 42.308 0.00 0.00 0.00 4.30
1038 1582 1.416813 CGCACGGACAGCAGATTCTC 61.417 60.000 0.00 0.00 0.00 2.87
1050 1594 1.649390 AACAAACAAGCACGCACGGA 61.649 50.000 0.00 0.00 0.00 4.69
1068 1612 1.003355 CTCGCCTCCAAGCTCCAAA 60.003 57.895 0.00 0.00 0.00 3.28
1069 1613 1.913262 TCTCGCCTCCAAGCTCCAA 60.913 57.895 0.00 0.00 0.00 3.53
1070 1614 2.283894 TCTCGCCTCCAAGCTCCA 60.284 61.111 0.00 0.00 0.00 3.86
1071 1615 1.038130 TAGTCTCGCCTCCAAGCTCC 61.038 60.000 0.00 0.00 0.00 4.70
1072 1616 0.383949 CTAGTCTCGCCTCCAAGCTC 59.616 60.000 0.00 0.00 0.00 4.09
1073 1617 1.040339 CCTAGTCTCGCCTCCAAGCT 61.040 60.000 0.00 0.00 0.00 3.74
1087 1634 2.166664 GCCACGTCATCTTCTTCCTAGT 59.833 50.000 0.00 0.00 0.00 2.57
1315 1862 1.227205 CTGCCGCTCCAAGCTAGAG 60.227 63.158 8.93 8.93 39.60 2.43
1325 1872 2.202864 GAGCTCTTCCTGCCGCTC 60.203 66.667 6.43 0.00 41.60 5.03
1332 1879 2.031120 CATCCTTCTCGAGCTCTTCCT 58.969 52.381 12.85 0.00 0.00 3.36
1343 1890 1.753073 CATTGCCCAACCATCCTTCTC 59.247 52.381 0.00 0.00 0.00 2.87
1373 1920 3.841643 AGTAGTTACCAACGAATCCACG 58.158 45.455 0.00 0.00 36.23 4.94
1425 1989 3.452755 TCAATCCGCTCACGAATGTAT 57.547 42.857 0.00 0.00 43.93 2.29
1426 1990 2.951457 TCAATCCGCTCACGAATGTA 57.049 45.000 0.00 0.00 43.93 2.29
1427 1991 1.935873 CATCAATCCGCTCACGAATGT 59.064 47.619 0.00 0.00 43.93 2.71
1428 1992 2.204237 TCATCAATCCGCTCACGAATG 58.796 47.619 0.00 0.00 43.93 2.67
1429 1993 2.602257 TCATCAATCCGCTCACGAAT 57.398 45.000 0.00 0.00 43.93 3.34
1430 1994 2.378445 TTCATCAATCCGCTCACGAA 57.622 45.000 0.00 0.00 43.93 3.85
1431 1995 2.602257 ATTCATCAATCCGCTCACGA 57.398 45.000 0.00 0.00 43.93 4.35
1432 1996 2.609002 TGAATTCATCAATCCGCTCACG 59.391 45.455 3.38 0.00 34.30 4.35
1473 2071 5.606348 TGCACATCCACATATACAGTGTA 57.394 39.130 5.24 5.24 35.24 2.90
1532 2138 3.913548 TTGATGCTAAACACATTGCGT 57.086 38.095 0.00 0.00 0.00 5.24
1555 2161 3.885297 CCGAACGGAGGGAGTAGTATTTA 59.115 47.826 7.53 0.00 37.50 1.40
1566 2172 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1569 2175 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
1571 2177 4.718858 TTGTGACAAGTAATTCCGAACG 57.281 40.909 0.00 0.00 0.00 3.95
1572 2178 7.096230 CCATTTTTGTGACAAGTAATTCCGAAC 60.096 37.037 0.00 0.00 0.00 3.95
1573 2179 6.920758 CCATTTTTGTGACAAGTAATTCCGAA 59.079 34.615 0.00 0.00 0.00 4.30
1574 2180 6.263392 TCCATTTTTGTGACAAGTAATTCCGA 59.737 34.615 0.00 0.00 0.00 4.55
1575 2181 6.442952 TCCATTTTTGTGACAAGTAATTCCG 58.557 36.000 0.00 0.00 0.00 4.30
1576 2182 9.921637 TTATCCATTTTTGTGACAAGTAATTCC 57.078 29.630 0.00 0.00 0.00 3.01
1582 2188 9.054922 CCATTTTTATCCATTTTTGTGACAAGT 57.945 29.630 0.00 0.00 0.00 3.16
1583 2189 9.270640 TCCATTTTTATCCATTTTTGTGACAAG 57.729 29.630 0.00 0.00 0.00 3.16
1584 2190 9.790344 ATCCATTTTTATCCATTTTTGTGACAA 57.210 25.926 0.00 0.00 0.00 3.18
1585 2191 9.217278 CATCCATTTTTATCCATTTTTGTGACA 57.783 29.630 0.00 0.00 0.00 3.58
1586 2192 9.218440 ACATCCATTTTTATCCATTTTTGTGAC 57.782 29.630 0.00 0.00 0.00 3.67
1606 2212 9.764363 GATGTATTTCAGTTGTAGATACATCCA 57.236 33.333 17.60 0.00 45.75 3.41
1646 2252 7.094805 CCTCCATTCAGAATTACTCGTCAAAAA 60.095 37.037 0.00 0.00 0.00 1.94
1647 2253 6.371548 CCTCCATTCAGAATTACTCGTCAAAA 59.628 38.462 0.00 0.00 0.00 2.44
1648 2254 5.874810 CCTCCATTCAGAATTACTCGTCAAA 59.125 40.000 0.00 0.00 0.00 2.69
1649 2255 5.419542 CCTCCATTCAGAATTACTCGTCAA 58.580 41.667 0.00 0.00 0.00 3.18
1650 2256 4.141937 CCCTCCATTCAGAATTACTCGTCA 60.142 45.833 0.00 0.00 0.00 4.35
1651 2257 4.099573 TCCCTCCATTCAGAATTACTCGTC 59.900 45.833 0.00 0.00 0.00 4.20
1652 2258 4.030913 TCCCTCCATTCAGAATTACTCGT 58.969 43.478 0.00 0.00 0.00 4.18
1653 2259 4.100189 ACTCCCTCCATTCAGAATTACTCG 59.900 45.833 0.00 0.00 0.00 4.18
1654 2260 5.622346 ACTCCCTCCATTCAGAATTACTC 57.378 43.478 0.00 0.00 0.00 2.59
1655 2261 5.367060 GGTACTCCCTCCATTCAGAATTACT 59.633 44.000 0.00 0.00 0.00 2.24
1656 2262 5.130477 TGGTACTCCCTCCATTCAGAATTAC 59.870 44.000 0.00 0.00 0.00 1.89
1657 2263 5.130477 GTGGTACTCCCTCCATTCAGAATTA 59.870 44.000 0.00 0.00 36.09 1.40
1658 2264 4.080299 GTGGTACTCCCTCCATTCAGAATT 60.080 45.833 0.00 0.00 36.09 2.17
1659 2265 3.456277 GTGGTACTCCCTCCATTCAGAAT 59.544 47.826 0.00 0.00 36.09 2.40
1660 2266 2.838202 GTGGTACTCCCTCCATTCAGAA 59.162 50.000 0.00 0.00 36.09 3.02
1661 2267 2.225522 TGTGGTACTCCCTCCATTCAGA 60.226 50.000 0.00 0.00 36.09 3.27
1662 2268 2.169352 CTGTGGTACTCCCTCCATTCAG 59.831 54.545 0.00 0.00 36.09 3.02
1663 2269 2.187958 CTGTGGTACTCCCTCCATTCA 58.812 52.381 0.00 0.00 36.09 2.57
1664 2270 2.432510 CTCTGTGGTACTCCCTCCATTC 59.567 54.545 0.00 0.00 36.09 2.67
1665 2271 2.044492 TCTCTGTGGTACTCCCTCCATT 59.956 50.000 0.00 0.00 36.09 3.16
1666 2272 1.646447 TCTCTGTGGTACTCCCTCCAT 59.354 52.381 0.00 0.00 36.09 3.41
1667 2273 1.081481 TCTCTGTGGTACTCCCTCCA 58.919 55.000 0.00 0.00 0.00 3.86
1668 2274 1.272536 TGTCTCTGTGGTACTCCCTCC 60.273 57.143 0.00 0.00 0.00 4.30
1669 2275 2.217510 TGTCTCTGTGGTACTCCCTC 57.782 55.000 0.00 0.00 0.00 4.30
1670 2276 2.930109 ATGTCTCTGTGGTACTCCCT 57.070 50.000 0.00 0.00 0.00 4.20
1671 2277 3.633065 GAGTATGTCTCTGTGGTACTCCC 59.367 52.174 0.00 0.00 39.86 4.30
1672 2278 4.904253 GAGTATGTCTCTGTGGTACTCC 57.096 50.000 0.00 0.00 39.86 3.85
1673 2279 3.633065 GGGAGTATGTCTCTGTGGTACTC 59.367 52.174 0.00 0.00 42.40 2.59
1674 2280 3.269906 AGGGAGTATGTCTCTGTGGTACT 59.730 47.826 0.00 0.00 42.40 2.73
1675 2281 3.633065 GAGGGAGTATGTCTCTGTGGTAC 59.367 52.174 0.00 0.00 35.39 3.34
1676 2282 3.372784 GGAGGGAGTATGTCTCTGTGGTA 60.373 52.174 0.00 0.00 35.39 3.25
1677 2283 2.624557 GGAGGGAGTATGTCTCTGTGGT 60.625 54.545 0.00 0.00 35.39 4.16
1678 2284 2.035632 GGAGGGAGTATGTCTCTGTGG 58.964 57.143 0.00 0.00 35.39 4.17
1679 2285 1.678627 CGGAGGGAGTATGTCTCTGTG 59.321 57.143 0.00 0.00 35.39 3.66
1680 2286 1.285373 ACGGAGGGAGTATGTCTCTGT 59.715 52.381 0.00 0.00 35.39 3.41
1681 2287 1.950909 GACGGAGGGAGTATGTCTCTG 59.049 57.143 0.00 0.00 35.39 3.35
1682 2288 1.133730 GGACGGAGGGAGTATGTCTCT 60.134 57.143 0.00 0.00 39.53 3.10
1683 2289 1.320507 GGACGGAGGGAGTATGTCTC 58.679 60.000 0.00 0.00 42.07 3.36
1684 2290 0.106116 GGGACGGAGGGAGTATGTCT 60.106 60.000 0.00 0.00 0.00 3.41
1685 2291 0.396695 TGGGACGGAGGGAGTATGTC 60.397 60.000 0.00 0.00 0.00 3.06
1686 2292 0.264955 ATGGGACGGAGGGAGTATGT 59.735 55.000 0.00 0.00 0.00 2.29
1687 2293 2.304221 TATGGGACGGAGGGAGTATG 57.696 55.000 0.00 0.00 0.00 2.39
1688 2294 3.173965 CATTATGGGACGGAGGGAGTAT 58.826 50.000 0.00 0.00 0.00 2.12
1689 2295 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
1690 2296 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
1691 2297 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
1692 2298 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
1693 2299 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
1694 2300 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
1695 2301 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
1696 2302 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
1739 2345 9.149225 TGTTAAACGTCTTACTAGTGTCAAAAA 57.851 29.630 5.39 0.00 0.00 1.94
1740 2346 8.700722 TGTTAAACGTCTTACTAGTGTCAAAA 57.299 30.769 5.39 0.00 0.00 2.44
1741 2347 8.876275 ATGTTAAACGTCTTACTAGTGTCAAA 57.124 30.769 5.39 0.00 0.00 2.69
1742 2348 8.355169 AGATGTTAAACGTCTTACTAGTGTCAA 58.645 33.333 5.39 0.00 41.41 3.18
1743 2349 7.879070 AGATGTTAAACGTCTTACTAGTGTCA 58.121 34.615 5.39 0.00 41.41 3.58
1805 2411 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
1806 2412 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
1807 2413 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
1808 2414 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
1809 2415 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
1811 2417 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
1812 2418 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
1813 2419 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
1814 2420 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
1815 2421 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
1816 2422 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
1817 2423 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
1818 2424 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
1819 2425 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
1820 2426 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
1821 2427 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
1822 2428 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
1823 2429 2.149973 TAAACTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
1824 2430 4.750021 AAATAAACTACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
1825 2431 5.727434 TGAAAATAAACTACTCCCTCCGTC 58.273 41.667 0.00 0.00 0.00 4.79
1826 2432 5.750352 TGAAAATAAACTACTCCCTCCGT 57.250 39.130 0.00 0.00 0.00 4.69
1827 2433 7.767198 TGTTATGAAAATAAACTACTCCCTCCG 59.233 37.037 0.00 0.00 0.00 4.63
1828 2434 9.628500 ATGTTATGAAAATAAACTACTCCCTCC 57.372 33.333 0.00 0.00 0.00 4.30
1941 2547 3.252974 AGCAACGGAGAGAGTATTTGG 57.747 47.619 0.00 0.00 0.00 3.28
1949 2555 6.640518 AGACAAATATTTAGCAACGGAGAGA 58.359 36.000 0.00 0.00 0.00 3.10
1950 2556 6.910536 AGACAAATATTTAGCAACGGAGAG 57.089 37.500 0.00 0.00 0.00 3.20
1951 2557 7.681939 AAAGACAAATATTTAGCAACGGAGA 57.318 32.000 0.00 0.00 0.00 3.71
1952 2558 8.742554 AAAAAGACAAATATTTAGCAACGGAG 57.257 30.769 0.00 0.00 0.00 4.63
1953 2559 9.834628 CTAAAAAGACAAATATTTAGCAACGGA 57.165 29.630 0.00 0.00 31.06 4.69
1954 2560 9.834628 TCTAAAAAGACAAATATTTAGCAACGG 57.165 29.630 0.00 0.00 36.03 4.44
1979 2585 9.916397 CGTATGTGTTAGTCCATTTAAAATCTC 57.084 33.333 0.00 0.00 0.00 2.75
1980 2586 9.661563 TCGTATGTGTTAGTCCATTTAAAATCT 57.338 29.630 0.00 0.00 0.00 2.40
1984 2590 9.221933 ACATTCGTATGTGTTAGTCCATTTAAA 57.778 29.630 6.89 0.00 43.29 1.52
1985 2591 8.780846 ACATTCGTATGTGTTAGTCCATTTAA 57.219 30.769 6.89 0.00 43.29 1.52
1987 2593 8.958119 ATACATTCGTATGTGTTAGTCCATTT 57.042 30.769 16.91 0.00 44.56 2.32
2039 2645 9.485206 AGTGACTACATACGAAACAAAATAAGT 57.515 29.630 0.00 0.00 0.00 2.24
2042 2648 9.263538 ACAAGTGACTACATACGAAACAAAATA 57.736 29.630 0.00 0.00 0.00 1.40
2043 2649 8.149973 ACAAGTGACTACATACGAAACAAAAT 57.850 30.769 0.00 0.00 0.00 1.82
2044 2650 7.542534 ACAAGTGACTACATACGAAACAAAA 57.457 32.000 0.00 0.00 0.00 2.44
2045 2651 7.278203 TCAACAAGTGACTACATACGAAACAAA 59.722 33.333 0.00 0.00 0.00 2.83
2046 2652 6.757478 TCAACAAGTGACTACATACGAAACAA 59.243 34.615 0.00 0.00 0.00 2.83
2047 2653 6.274579 TCAACAAGTGACTACATACGAAACA 58.725 36.000 0.00 0.00 0.00 2.83
2048 2654 6.758593 TCAACAAGTGACTACATACGAAAC 57.241 37.500 0.00 0.00 0.00 2.78
2049 2655 7.773864 TTTCAACAAGTGACTACATACGAAA 57.226 32.000 0.00 0.00 35.39 3.46
2050 2656 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
2051 2657 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
2052 2658 7.582435 AGATTTCAACAAGTGACTACATACG 57.418 36.000 0.00 0.00 35.39 3.06
2055 2661 9.778741 TCTAAAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
2056 2662 9.607988 TTCTAAAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
2059 2665 9.396022 TCTTTCTAAAGATTTCAACAAGTGACT 57.604 29.630 1.00 0.00 39.95 3.41
2060 2666 9.439537 GTCTTTCTAAAGATTTCAACAAGTGAC 57.560 33.333 8.31 0.00 45.83 3.67
2061 2667 9.173021 TGTCTTTCTAAAGATTTCAACAAGTGA 57.827 29.630 8.31 0.00 45.83 3.41
2062 2668 9.787532 TTGTCTTTCTAAAGATTTCAACAAGTG 57.212 29.630 8.31 0.00 45.83 3.16
2079 2685 8.947115 CCTTCGTTCCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
2080 2686 8.943002 TCCTTCGTTCCTAAATATTTGTCTTTC 58.057 33.333 11.05 0.00 0.00 2.62
2081 2687 8.857694 TCCTTCGTTCCTAAATATTTGTCTTT 57.142 30.769 11.05 0.00 0.00 2.52
2082 2688 8.857694 TTCCTTCGTTCCTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
2083 2689 8.101419 ACTTCCTTCGTTCCTAAATATTTGTCT 58.899 33.333 11.05 0.00 0.00 3.41
2084 2690 8.265165 ACTTCCTTCGTTCCTAAATATTTGTC 57.735 34.615 11.05 0.00 0.00 3.18
2085 2691 9.159364 GTACTTCCTTCGTTCCTAAATATTTGT 57.841 33.333 11.05 0.00 0.00 2.83
2086 2692 9.158233 TGTACTTCCTTCGTTCCTAAATATTTG 57.842 33.333 11.05 1.40 0.00 2.32
2087 2693 9.901172 ATGTACTTCCTTCGTTCCTAAATATTT 57.099 29.630 5.89 5.89 0.00 1.40
2090 2696 9.807649 GTTATGTACTTCCTTCGTTCCTAAATA 57.192 33.333 0.00 0.00 0.00 1.40
2091 2697 8.316214 TGTTATGTACTTCCTTCGTTCCTAAAT 58.684 33.333 0.00 0.00 0.00 1.40
2092 2698 7.669427 TGTTATGTACTTCCTTCGTTCCTAAA 58.331 34.615 0.00 0.00 0.00 1.85
2093 2699 7.230849 TGTTATGTACTTCCTTCGTTCCTAA 57.769 36.000 0.00 0.00 0.00 2.69
2094 2700 6.839124 TGTTATGTACTTCCTTCGTTCCTA 57.161 37.500 0.00 0.00 0.00 2.94
2095 2701 5.733620 TGTTATGTACTTCCTTCGTTCCT 57.266 39.130 0.00 0.00 0.00 3.36
2096 2702 6.980051 AATGTTATGTACTTCCTTCGTTCC 57.020 37.500 0.00 0.00 0.00 3.62
2097 2703 7.955864 GTGAAATGTTATGTACTTCCTTCGTTC 59.044 37.037 0.00 0.00 0.00 3.95
2098 2704 7.660208 AGTGAAATGTTATGTACTTCCTTCGTT 59.340 33.333 0.00 0.00 0.00 3.85
2099 2705 7.117812 CAGTGAAATGTTATGTACTTCCTTCGT 59.882 37.037 0.00 0.00 0.00 3.85
2100 2706 7.330946 TCAGTGAAATGTTATGTACTTCCTTCG 59.669 37.037 0.00 0.00 0.00 3.79
2101 2707 8.547967 TCAGTGAAATGTTATGTACTTCCTTC 57.452 34.615 0.00 0.00 0.00 3.46
2102 2708 9.167311 GATCAGTGAAATGTTATGTACTTCCTT 57.833 33.333 0.00 0.00 0.00 3.36
2103 2709 8.543774 AGATCAGTGAAATGTTATGTACTTCCT 58.456 33.333 0.00 0.00 0.00 3.36
2104 2710 8.723942 AGATCAGTGAAATGTTATGTACTTCC 57.276 34.615 0.00 0.00 0.00 3.46
2110 2716 9.182214 AGCATTTAGATCAGTGAAATGTTATGT 57.818 29.630 13.97 0.00 40.89 2.29
2111 2717 9.661187 GAGCATTTAGATCAGTGAAATGTTATG 57.339 33.333 13.97 8.02 40.89 1.90
2127 2733 9.314321 CCGAAAAGAAGTATAAGAGCATTTAGA 57.686 33.333 0.00 0.00 0.00 2.10
2134 2740 6.797454 TCTCTCCGAAAAGAAGTATAAGAGC 58.203 40.000 0.00 0.00 0.00 4.09
2143 2749 5.715070 ACATGTACTCTCTCCGAAAAGAAG 58.285 41.667 0.00 0.00 0.00 2.85
2146 2752 9.751542 ATATTTACATGTACTCTCTCCGAAAAG 57.248 33.333 4.68 0.00 0.00 2.27
2150 2756 8.693120 AAGATATTTACATGTACTCTCTCCGA 57.307 34.615 4.68 0.00 0.00 4.55
2183 2789 3.379688 TGAGTTCTCGAGATGATGGACTG 59.620 47.826 17.44 0.00 0.00 3.51
2199 2805 1.270550 CATTTGTGCCCCTGTGAGTTC 59.729 52.381 0.00 0.00 0.00 3.01
2254 2860 9.965824 CAATTAAGGGTTAATGCCATAAACTAG 57.034 33.333 0.00 0.00 36.06 2.57
2264 2870 6.451064 AGTGTAGCAATTAAGGGTTAATGC 57.549 37.500 0.00 0.00 36.06 3.56
2292 2898 1.200519 AAAAGCTGGCATGCATGGAT 58.799 45.000 27.34 7.60 34.99 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.