>input_sequence_83873
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-----------------------ATGGAGTTGGAGCAGCAGAGCGGAGGAAATAATCACAGGAGAATCTGCTGTCCGTGC
GTGCTTGTTTGTTTGGA---GCTTGGAGGCGAGACTAGGAAGAAGATGACGTGGCGGTTCTTGCCTCTTTGCGCGCTCCT
CCTCGTGCTGCTCTGCATGGCGGCGAGCCTCGCGGAGGGGAGGCGCGGCGGGGGACGCCCCGTCATCGGCGGCGGCAGCG
GCGGGGCCAGAGGGAGAGGGTCCGGCAGCCCGCGCGGCCTCAGCGGCGGCACCTGGGCGGCGTGCGGCGGCTCCTCGCTG
CTGGTCGCGGCGGCCATGCTCCTCTAG-----------------------------------------------------
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>chr3B_1_TraesCS3B01G356800
CAGGAAGACGGATGTTGCAACCTGTAGAAAAAATATTGCAGATGGCACAGAATGCTGCAAGGTCAGAGTCGTTTGGTTTC
CTAACTCAGCTAGCTTAGCTAG----------------------------------------------------------
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------------------------------------------------------------GCCAGGTTAATCTTGCCGGT
TCCGGCTAGAGTCGTCAAAAGCAAGACTTAGCGTTTGGAAAGACACAAAATTAAAGCGTTAACTGCCAAAATGCCCACGT
TCGTGTCTTTTGCCAGTGCGGGAGAGCCAAATTGGCTCGCCTCCGTTGGCAAGCTTTTTGTGGCGGTTAAAGGGTAAATT
GCCTCCAGATGCTAGCTTTATTTTCCTAACCAAATGAATATCCTTGCCCGGCAAGGCTAGGAGCTGCGCTTGCCTAAGAT
CCAAACGGACTTCGGCTTGTTCGTAAAATCATAATCGAAACTGGTCGGACGTACTATTTGT--------CTCTAACAAGG
ACGTCACTTTCTCTCCGGCAAAACAATGTGC--ACCCGTGTAAAAAAACTTGGAGACGTGTCGTACTCGAGAAAACTAGG
AGACGTGTGCCATCGTGCACGAACTTACAGAAGTCGGCAAGTCGTACCAACATG---AGCTAACGACGAACCGACCTGGC
ACGTGCATGCACTACCGAGCTTCGCTGTCAAGAAACCTGGAGCATATCTCATCCCAGATTAAATTATCATATCGCAGTCC
ATCAGACAGGGTAACACGCATA-----CGATCCTCTCATCAGCCAGCAGTCACAAA-----TCGTCGTCTTCAGCGCATC
GAAAACCATTTACCATCAATACATTAATCGACAATGGCAGGCAAACCACGACAGCTTCTCACCCATCACGTAGAAGAGAA
ACGTAGCTACTCTTACTACTTCTCGACCTCAAATCACCTGCACACGCTTT-CAGATATAAGAAGAGGAACATTTCCATCC
ACTAAGATGTGGACTCGTGGCGTAT-ACCAGTCAAAACCCACTGCCAGGTCAACTCTGGATCCTGCATAAATATACACCA
CGAGCGATGATGCTGCCCACGACATGGAGTTGGAGCAGCAGAGCGGAGGAAATAATCACAGGAGAATCTGCTGTCCGTGC
GTGCTTGTTTGTTTGGA---GCTTGGAGGCGAGACTAGGAAGAAGATGACGTGGCGGTTCTTGCCTCTTTGCGCGCTCCT
CCTCGTGCTGCTCTGCATGGCGGCGAGCCTCGCGGAGGGGAGGCGCGGCGGGGGACGCCCCGTCATCGGCGGCGGCAGCG
GCGGGGCCAGAGGGAGAGGGTCCGGCAGCCCGCGCGGCCTCAGCGGCGGCACCTGGGCGGCGTGCGGCGGCTCCTCGCTG
CTGGTCGCGGCGGCCATGCTCCTCTAGCTTGGAGCGGCAGGAAGAGCTCGAGAAGGATGGTTGGGCAATGTAAATGTTCC
GTGGATTCGTTGGTA-------ACTACTATTGATTTGATTGTTGTTGTATATAC----------ATACATACATTCGTGA
GCGGATTGATGAATTCATTTCATA----------------------------------TGTTCATATTGATACACTGTAT
ATGTGGATGTGCATGATCTGTTCTCGTCAAAGTATCGTAGAG--------TGTGATTACGCAATGTGTTTAGCATCAAAT
TAAATACTACTCCCTCCGTTCGGAATTACTTGTCACAAAAATGGATAAAAATGGATGTATCTACAACTGAAATACATCTA
GATACATTCATTTTTTGACGAGTAATTCTGAATGGAGGGAGTACCACAGAGACATACTCCCTCCGTCCCATAATGTAAGA
CGTTTTTTGACACTAGTAAGACGTTTTTTGACACTAGTAAGACGTTTAACATCTTACATTATAGTGTCAAAAAACGTCTT
ACTAGTGTCAAAAAACGTCTTACATTATGGGACGGAGGGAGTAGTTTATTTTCATAACATTTCACAGAACCACATCGTAG
AAACATAATGTGGTTATGTTATGTCAAATACATACTCCCTCTGTAAAGAAATGTGATTATGTTATGCCAAATACTCTCTC
CGTTGCTAAATATTTGTCTTTTTAGAGATTTTAAATGGACTAACACATACGAATGTATATAAACATATTTTAAATTGTAG
ATTTACTTATTTTGTTTCGTATGTAGTCACTTGTTGAAATCTTTAGAAAGACAAATATTTAGGAACGAAGGAAGTACATA
ACATTTCACTGATCTAAATGCTCTTATACTTCTTTTCGGAGAGAGTACATGTAAATATCTTAGATCTGCAGTCCATCATC
TCGAGAACTCACAGGGGCACAAATGCATGCAACCACCCATTTGCTTCAAGATTGATGCACTAGTTTATGGCATTAACCCT
TAATTGCTACACTTGGGATCCATGCATGCCAGCTTTTAGCAGAGTT
>chr3B_71
----------------------------------------------------------------------GTTTGGTTTC
CTAACTCAGCTAGCTTAGCTAGTGTTCGCGAAGGAGGAGCGGCGTTGCATTTGACACGTCGACAACGACGGGTCTCAGGG
CATGGAGCAGCGTGGTCTCGCTGTTGGGCGTGTGTTGATGGATGAGAGCAGGATGGTGGCGTTGTTTGATGTCGTGGTGG
CATCGACGACAGCTAGATAGGGCAAGGTTGATGTGTTAGTACAACTCTTAAGATGGAGTGATGGTAGTTGGCGGCGGCGG
CCTCTGAAAGCGCATCAGACCGGTGTGTGCCCCATATCCAGCAAGTGGCTTGGTTGGGGCCTCGGGTCTTAGATGTTAGG
CTTGGTTGCGAGGTCTGTTTGGTATTAGGCCCGGACTATCAGCACCCCTTCATTACCTGGATGGAGTAGCGACAGATGTT
GCCTAGACGGTAGCTTTAAACTTGCTGTTATATTTCTTTGTAAGGTCTTTTGTGAATAACTAATAAAGTGACTGCATGCA
TCACCCAGATGCAAAGGACGGGGGTCTTCCTCCTTTTCTAAAAAAAGCTAACTTAGCTAGGCCAGGTCAATCATGCCGGT
TCTGGCTAGAGTCGTCAAAAGCAAGCCTTGGCGTTTGGAAATACACAAAATTAAGGCGTTAACTGCCAAAGTGCCCATGT
TCGTGTTGTTTGCCAGTGTGGGAGAGCCAAATTGGCCCGCCTACCCTGGCAAGTTTTTTGTGGCGGTTAAAGGGTAAATT
GCCACCGGATGCTAGCTTTATTTTCCTAACCAAATGAATATCCTAGCCCGACAAGGCTAGGAGCTGTGCTTGCCTAATAT
CCAAA---------------------------------------------------------------------------
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>chr3D_376
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-------------GGCTTGTTTGTAAAATCATAATCGAAACTGGTCGGACGTGCCACATTTCTATTTGCCTCTAACATGG
ACGTCAATTTCTCTCCGGCAAAACAATCAGCTAACCCGTGTAAAA---CTTGGAGACGTGTGGTATTCGAGAAAACTTGG
AGACGTGTACCATCGTGCACGAACTTAGAGAAGTCGGCAAGTCATACCAACATGAGCAGCTAACGACGAACCGACCTGGC
ACGTGCGTGCACTACGGAGCTTCGCTGTCAAGAAACCTGGAGCATATCCCAG----------ATTATCATATCGCAGTCC
ATCAGCCAGGATAACACGCATACGATCCGATCCTTTCATCAGCCAACAGAGTTACAAATCGTCGTCGTCTTCAGCGCACC
GAAAACCAATTAACATGAATACATTAATCGATAATGGCAGGCAAACCGCGACAACTTCTCACCCATCACGTAGAATAGAA
ACGTA----------------------CTCAAATCACCTGCACACGCTTT-CATCAGAGACAAGAAGAACACTTCCATCC
ACTAAGACGTGGACTCGTGGCGTATTACCAGTCAAAACCCGTTGCCAGGTCAACTCTGTACCCTGCATAAATATACACCA
CGAGCGATGATGCTGCCCACGACATCGAGTTGGAGCAGCAGAGCAGAGCAAATAATCACAGAAGAATCTGCTGCCCGTAC
GTGCTTGTTTGGAGCTTGGTGCTTGGAGGCGAGGCTAGGAAGAAGATGACGAGGCGGTTCTTGCCTCTTTGCGCGCTCCT
CCTCGTGCTGCTCTGCATGGCGGCGAGCCTCGCGGAGGGGAGGCGCGGCGGGGGACGCCCCATCATCGGCGGCGGCAGCG
GCGGGGCCAGAGGGAGGGGCTCCGGCAGCCCGCGCGGCCTCAGCGGCGGCACCTGGGCGGCGTGCGTCGGCTCCTCGCTG
CTGGTCGCGGCGGCCATGCTCTTCTAGCTTGCAGCGGCGGGAAGAGCTCAAGAAGGATGGTTGGGCAACGTAAATGTTCT
GTGCATTCGTTGGTTCTTTGTTACTACTGTCGATTTGATTGTTGTTGTATATAC----------ATAC--------GTGA
GCGGATTGGCTAATTCATTCGATATGTT-TATCTTGATTATTAAGTGGATGCAGCC---GTTCATATTGAGACACTGTAT
ATGAGGATGTGCATGATCTGTTCTCGTCAAAGTATGGTAGAGACAGCTCATGTGATTGCGCAGTGTGTTTAGCATCAAAT
CATATACTACTACCACGCCAACA---------------------------------------------------------
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-----------------------------------------TAGTTTATTTTCATAACATTTCACAGAACTACATCCTAG
AAA-----------------------------------------------------------------------------
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>chr3A_847
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---------------------------CTCAAATCACCTGCACACGCTTTTCATCAGAGACAAGAAGAACATTTCCATCC
ACTAAGACGTGGACTCGTGGCGTGT-GCCAGTCAAAACCCGTTGCCGGGTCAACTCTGGATCCTGCATAAATATACACCA
CCCGGGATGTTGCTGCCCACGACATCGAGTTGGAGCAGCCGAGCAGAGGTAGTAATCACAGAAGAATCTGCTGCCCCTGC
GTGCTTGTTTGGAGCTTGGTGCCTGGAGGCGAGGCTAGGAAGAAGATGACGAGGCGGTTCTTGCCTCTTTGCGCGCTCCT
CATCGTGCTGCTCTGCATGGCGGCGAGCCTCGCGGAGGGGAGGCGCAGCGGGGGGCGCCCCATCATCGGCGGCGGCAGCG
GCGGGGCCAGAGGGAGAGGGTCAGGCAGCCCGCGCGGCCTCAGCGGCGGCACCTGGGCGGCGTGCGTCGGCTCCTCGCTG
CTGGTCGCGGTGGCCATGCTCTTCTAGCTTGCAGCGGCGAGAAGAACTCAAGAAGGATGGTTGGGCAATGTAAATGTTCT
GTGGATTCGTTGGTTCTTTACTACTACTGTCGATTTGATTGTTGTTGTATATACGTACAGATACATTC--------GTGA
GCGGATTGATGAATTCATTTGACATGTTCTATCTTGATTAAGTGGATTATGGGCAGTTTGTTCATATTGAGACACCGTAT
ATGTGGATGTGCATGATCTCTCCTCGTCAAAGTATCGTAGAGACAGCCCATGTGATTTCGCAGTGTGTTTAGCATCAAAT
CAAATACTACCACACA---AACA---------------------------------------------------------
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-----------------------------------------TAGTTTATTTTCATAACATTTCACAGAACCACATCGTAG
AAACATAATGTGGTTATGTTATGTCAAATACATACTCCCTCGGTAAAGAAATGTGATTATGTTATGTCAAATAC------
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-----------------------------------------------------------------------------ATA
ACATTTCACTGGACTAAATACTCTTATATTTTTTTAGGGAGAGAGTACATGTAAATATCTTAGATCTGTAGTCCATCATC
TCGAAAACTCACAGGGGCACAAATGCATGCAACCACCCATTTGCTTCAAGATTGATGCATTAGTTTATGTCATTAACCCT
TAATTGCTACACTTGGGGTCCATGCATGCTATCTTTTAGCAGAGTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
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-------------------------------------------------------------------S----S-------
--S----------------------S---S-----------S------------S---------------S------S--
------SS----------S-----------------S-----S-SS-------S--------------------------
---S--S-------------------------------------S-----S---------------S----------S--
-----SSSSSSSS--------S------------------------------S-S-SS-S-----------------S--
------S--------------------SS----------------SSS-------------S---S-----------S--
--------S------------------S---------------S------------------------------------
------S--------S--------------------------------S--SSSSSSSSSSS------------------
-----S----S-----------------------S----------S---SSSS-S-----------------------S-
--------S---S---S--------------S---------------S-----S---------------------S----
-----SSSSSSSSSSSSSSSSSSSSSS--------------------------SSSSSS-S----S--------------
-------S--------------------------------SS--------------------------------------
-------------------------S------------------S----------------S-----------S------
-----------SSSSSS----------------S-----------------S----------------------------
-------------------------------------------------------------S------------------
------------------------------------------------------------------S-------------
---------------------S---------S------S----------S-----------------------------S
--------------S-------------S-S-------------------------------------SSSSSSSS----
--------------------S-------------------------------------------------S---------
---------------------------------------------------------S----S-----------------
S----------S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
-----------------------------------------S------------------------S-------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
-----------SS------S--------S--S---SS-------------------------------S-----------
----S------------------------------------------------------S---------S----------
-----------------S-----------S-S--------------
>forward_25
-----AGACGGATGTTGCAACCTGT-------------------------------------------------------
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>reverse_2290
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-------------------------------------------------AGACATACTCCCTCCGTCCC-----------
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