Multiple sequence alignment - TraesCS3B01G355500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G355500 | chr3B | 100.000 | 5285 | 0 | 0 | 1 | 5285 | 565729458 | 565724174 | 0.000000e+00 | 9760.0 |
1 | TraesCS3B01G355500 | chr3B | 83.557 | 298 | 42 | 5 | 2586 | 2879 | 417730690 | 417730396 | 6.740000e-69 | 272.0 |
2 | TraesCS3B01G355500 | chr3B | 97.826 | 138 | 2 | 1 | 3051 | 3188 | 261863883 | 261864019 | 2.460000e-58 | 237.0 |
3 | TraesCS3B01G355500 | chr3B | 94.667 | 150 | 4 | 4 | 3040 | 3188 | 532207121 | 532207267 | 4.120000e-56 | 230.0 |
4 | TraesCS3B01G355500 | chr3B | 100.000 | 51 | 0 | 0 | 4490 | 4540 | 565724921 | 565724871 | 1.570000e-15 | 95.3 |
5 | TraesCS3B01G355500 | chr3B | 100.000 | 51 | 0 | 0 | 4538 | 4588 | 565724969 | 565724919 | 1.570000e-15 | 95.3 |
6 | TraesCS3B01G355500 | chr3D | 95.963 | 3096 | 88 | 14 | 1 | 3062 | 433318825 | 433315733 | 0.000000e+00 | 4990.0 |
7 | TraesCS3B01G355500 | chr3D | 94.595 | 1406 | 26 | 11 | 3185 | 4588 | 433315742 | 433314385 | 0.000000e+00 | 2130.0 |
8 | TraesCS3B01G355500 | chr3D | 93.649 | 803 | 39 | 3 | 4490 | 5280 | 433314435 | 433313633 | 0.000000e+00 | 1190.0 |
9 | TraesCS3B01G355500 | chr3D | 78.098 | 589 | 86 | 31 | 2308 | 2883 | 66337365 | 66337923 | 3.050000e-87 | 333.0 |
10 | TraesCS3B01G355500 | chr3D | 98.039 | 51 | 1 | 0 | 4538 | 4588 | 433314483 | 433314433 | 7.290000e-14 | 89.8 |
11 | TraesCS3B01G355500 | chr3A | 95.638 | 3095 | 89 | 20 | 1 | 3062 | 571411655 | 571408574 | 0.000000e+00 | 4926.0 |
12 | TraesCS3B01G355500 | chr3A | 94.317 | 1830 | 67 | 10 | 3185 | 5012 | 571408583 | 571406789 | 0.000000e+00 | 2769.0 |
13 | TraesCS3B01G355500 | chr3A | 97.163 | 141 | 4 | 0 | 3048 | 3188 | 193870195 | 193870335 | 6.840000e-59 | 239.0 |
14 | TraesCS3B01G355500 | chr3A | 100.000 | 127 | 0 | 0 | 3062 | 3188 | 35854703 | 35854577 | 8.850000e-58 | 235.0 |
15 | TraesCS3B01G355500 | chr3A | 88.889 | 117 | 13 | 0 | 2311 | 2427 | 700950342 | 700950458 | 1.530000e-30 | 145.0 |
16 | TraesCS3B01G355500 | chrUn | 81.304 | 583 | 54 | 26 | 2312 | 2885 | 103533822 | 103534358 | 6.330000e-114 | 422.0 |
17 | TraesCS3B01G355500 | chr7B | 82.704 | 503 | 44 | 25 | 1 | 486 | 223716521 | 223716997 | 1.770000e-109 | 407.0 |
18 | TraesCS3B01G355500 | chr7B | 80.727 | 275 | 38 | 8 | 2612 | 2881 | 603945481 | 603945217 | 3.230000e-47 | 200.0 |
19 | TraesCS3B01G355500 | chr6B | 80.806 | 521 | 61 | 20 | 2371 | 2885 | 54892458 | 54892945 | 6.460000e-99 | 372.0 |
20 | TraesCS3B01G355500 | chr6B | 100.000 | 130 | 0 | 0 | 3059 | 3188 | 338654721 | 338654850 | 1.900000e-59 | 241.0 |
21 | TraesCS3B01G355500 | chr2D | 89.157 | 249 | 24 | 2 | 288 | 535 | 118743863 | 118744109 | 1.850000e-79 | 307.0 |
22 | TraesCS3B01G355500 | chr2D | 80.000 | 300 | 51 | 7 | 2593 | 2886 | 430508512 | 430508216 | 4.150000e-51 | 213.0 |
23 | TraesCS3B01G355500 | chr2D | 78.317 | 309 | 52 | 11 | 2577 | 2882 | 65637613 | 65637317 | 9.040000e-43 | 185.0 |
24 | TraesCS3B01G355500 | chr2D | 81.356 | 236 | 27 | 10 | 2309 | 2535 | 430508747 | 430508520 | 5.440000e-40 | 176.0 |
25 | TraesCS3B01G355500 | chr1B | 86.429 | 280 | 34 | 3 | 2609 | 2885 | 453137629 | 453137907 | 2.390000e-78 | 303.0 |
26 | TraesCS3B01G355500 | chr5A | 89.333 | 225 | 23 | 1 | 312 | 535 | 340146307 | 340146531 | 1.120000e-71 | 281.0 |
27 | TraesCS3B01G355500 | chr5A | 97.101 | 138 | 4 | 0 | 3051 | 3188 | 510204041 | 510203904 | 3.180000e-57 | 233.0 |
28 | TraesCS3B01G355500 | chr5A | 93.151 | 146 | 8 | 2 | 1 | 145 | 340146087 | 340146231 | 4.150000e-51 | 213.0 |
29 | TraesCS3B01G355500 | chr5D | 77.799 | 527 | 62 | 30 | 2309 | 2827 | 386761230 | 386760751 | 1.880000e-69 | 274.0 |
30 | TraesCS3B01G355500 | chr5D | 87.892 | 223 | 21 | 2 | 287 | 508 | 526764216 | 526764433 | 1.890000e-64 | 257.0 |
31 | TraesCS3B01G355500 | chr5D | 91.463 | 164 | 12 | 2 | 1 | 163 | 526764013 | 526764175 | 1.920000e-54 | 224.0 |
32 | TraesCS3B01G355500 | chr5D | 100.000 | 38 | 0 | 0 | 493 | 530 | 526764450 | 526764487 | 2.640000e-08 | 71.3 |
33 | TraesCS3B01G355500 | chr4D | 78.571 | 434 | 69 | 11 | 2311 | 2738 | 98446367 | 98445952 | 1.130000e-66 | 265.0 |
34 | TraesCS3B01G355500 | chr4D | 97.872 | 47 | 1 | 0 | 2311 | 2357 | 446173810 | 446173856 | 1.220000e-11 | 82.4 |
35 | TraesCS3B01G355500 | chr4B | 97.810 | 137 | 3 | 0 | 3052 | 3188 | 421859137 | 421859273 | 2.460000e-58 | 237.0 |
36 | TraesCS3B01G355500 | chr1A | 97.826 | 138 | 1 | 2 | 3053 | 3188 | 435379019 | 435378882 | 2.460000e-58 | 237.0 |
37 | TraesCS3B01G355500 | chr1A | 89.024 | 164 | 16 | 2 | 1 | 163 | 510352371 | 510352209 | 8.970000e-48 | 202.0 |
38 | TraesCS3B01G355500 | chr4A | 97.101 | 138 | 4 | 0 | 3051 | 3188 | 557109227 | 557109090 | 3.180000e-57 | 233.0 |
39 | TraesCS3B01G355500 | chr4A | 84.337 | 166 | 26 | 0 | 3642 | 3807 | 610317742 | 610317907 | 4.230000e-36 | 163.0 |
40 | TraesCS3B01G355500 | chr7A | 75.641 | 234 | 51 | 3 | 2308 | 2535 | 38660382 | 38660615 | 1.560000e-20 | 111.0 |
41 | TraesCS3B01G355500 | chr2A | 100.000 | 30 | 0 | 0 | 2308 | 2337 | 61509696 | 61509667 | 7.390000e-04 | 56.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G355500 | chr3B | 565724174 | 565729458 | 5284 | True | 9760.00 | 9760 | 100.0000 | 1 | 5285 | 1 | chr3B.!!$R2 | 5284 |
1 | TraesCS3B01G355500 | chr3D | 433313633 | 433318825 | 5192 | True | 2099.95 | 4990 | 95.5615 | 1 | 5280 | 4 | chr3D.!!$R1 | 5279 |
2 | TraesCS3B01G355500 | chr3D | 66337365 | 66337923 | 558 | False | 333.00 | 333 | 78.0980 | 2308 | 2883 | 1 | chr3D.!!$F1 | 575 |
3 | TraesCS3B01G355500 | chr3A | 571406789 | 571411655 | 4866 | True | 3847.50 | 4926 | 94.9775 | 1 | 5012 | 2 | chr3A.!!$R2 | 5011 |
4 | TraesCS3B01G355500 | chrUn | 103533822 | 103534358 | 536 | False | 422.00 | 422 | 81.3040 | 2312 | 2885 | 1 | chrUn.!!$F1 | 573 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
405 | 411 | 1.079543 | GCTCGATGTGGTGCAGACT | 60.080 | 57.895 | 0.00 | 0.00 | 0.0 | 3.24 | F |
831 | 858 | 1.165907 | TTCTGCGAACAACCCAGCTG | 61.166 | 55.000 | 6.78 | 6.78 | 0.0 | 4.24 | F |
1013 | 1040 | 1.281899 | GTTGCTATGGAGTCGTCAGC | 58.718 | 55.000 | 2.46 | 2.46 | 0.0 | 4.26 | F |
2469 | 2501 | 0.608640 | TTCTCCTCACGCTTCTTCCC | 59.391 | 55.000 | 0.00 | 0.00 | 0.0 | 3.97 | F |
3154 | 3197 | 0.248289 | GTACGCAGCCTTTCCCTACA | 59.752 | 55.000 | 0.00 | 0.00 | 0.0 | 2.74 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1594 | 1621 | 1.690633 | CTTCTAGGCCAGGGCTCCA | 60.691 | 63.158 | 21.26 | 3.99 | 39.70 | 3.86 | R |
2176 | 2206 | 1.894466 | CACCCAAATCATTGAGCACCA | 59.106 | 47.619 | 0.00 | 0.00 | 38.94 | 4.17 | R |
2863 | 2905 | 2.395336 | AGAGCATCCTAGCAGATCCA | 57.605 | 50.000 | 0.00 | 0.00 | 36.85 | 3.41 | R |
4271 | 4324 | 0.397254 | ACCCCCTCAGTAGTCATCCG | 60.397 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 | R |
5111 | 5215 | 0.438830 | CCTGACTTTGCTTCGTACGC | 59.561 | 55.000 | 11.24 | 0.00 | 0.00 | 4.42 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
55 | 58 | 1.937191 | TCTGGACAGTGGATAGCACA | 58.063 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
69 | 72 | 5.359576 | TGGATAGCACAACAAAGAACAAACT | 59.640 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
88 | 92 | 6.014584 | ACAAACTCTAAATCAATTGGGGGTTC | 60.015 | 38.462 | 5.42 | 0.00 | 25.08 | 3.62 |
405 | 411 | 1.079543 | GCTCGATGTGGTGCAGACT | 60.080 | 57.895 | 0.00 | 0.00 | 0.00 | 3.24 |
453 | 459 | 4.404073 | TGCTTGTTGGGTCAAGTGTTATTT | 59.596 | 37.500 | 7.98 | 0.00 | 44.41 | 1.40 |
476 | 482 | 3.364068 | GGCTTTTCTTTTTCTCTCCGACG | 60.364 | 47.826 | 0.00 | 0.00 | 0.00 | 5.12 |
741 | 768 | 1.281925 | AATACACAGGGGAGGCTGGG | 61.282 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
814 | 841 | 2.531522 | ACCAAACCTGCATTGCTTTC | 57.468 | 45.000 | 10.49 | 0.00 | 0.00 | 2.62 |
831 | 858 | 1.165907 | TTCTGCGAACAACCCAGCTG | 61.166 | 55.000 | 6.78 | 6.78 | 0.00 | 4.24 |
1013 | 1040 | 1.281899 | GTTGCTATGGAGTCGTCAGC | 58.718 | 55.000 | 2.46 | 2.46 | 0.00 | 4.26 |
1101 | 1128 | 3.848975 | ACATCCTCCAGAAAATCCTGTCT | 59.151 | 43.478 | 0.00 | 0.00 | 32.43 | 3.41 |
1125 | 1152 | 3.250040 | GCGTGTGGATTAGAACTGTTGTT | 59.750 | 43.478 | 0.00 | 0.00 | 39.42 | 2.83 |
1278 | 1305 | 2.400399 | CGTCGGAAAGTAGACTTGCAA | 58.600 | 47.619 | 0.00 | 0.00 | 36.12 | 4.08 |
1594 | 1621 | 4.564782 | TCTCTGAACAGATTCATTGCCT | 57.435 | 40.909 | 4.96 | 0.00 | 43.92 | 4.75 |
1640 | 1667 | 3.525268 | TTTGATAGACTCTGCGATGCA | 57.475 | 42.857 | 0.00 | 0.00 | 36.92 | 3.96 |
1697 | 1724 | 2.270434 | ACCCTTGATGGCTTCCTAGA | 57.730 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2176 | 2206 | 7.438160 | GCAACAAAAAGGTAAAATCTAAGTGCT | 59.562 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
2178 | 2208 | 7.433680 | ACAAAAAGGTAAAATCTAAGTGCTGG | 58.566 | 34.615 | 0.00 | 0.00 | 0.00 | 4.85 |
2208 | 2238 | 8.642432 | TCAATGATTTGGGTGTACATTTTGTTA | 58.358 | 29.630 | 0.00 | 0.00 | 33.44 | 2.41 |
2266 | 2296 | 7.715657 | TGAATGCAAAACCTAATATCCATGAC | 58.284 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
2393 | 2424 | 0.801836 | ACGAATTTACGGTACCGCGG | 60.802 | 55.000 | 33.62 | 26.86 | 44.19 | 6.46 |
2428 | 2459 | 3.109151 | ACAGATCCCATAAACCCGTACA | 58.891 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2468 | 2500 | 2.457366 | TTTCTCCTCACGCTTCTTCC | 57.543 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2469 | 2501 | 0.608640 | TTCTCCTCACGCTTCTTCCC | 59.391 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
2580 | 2617 | 2.048127 | GCTCCAGCGACTTTCCGT | 60.048 | 61.111 | 0.00 | 0.00 | 0.00 | 4.69 |
2743 | 2780 | 5.356751 | CGGTTTGAATCCTCCAAATATGACA | 59.643 | 40.000 | 0.00 | 0.00 | 36.14 | 3.58 |
2863 | 2905 | 5.187687 | TCTGAAGGTTTGACCGTTTTTACT | 58.812 | 37.500 | 0.00 | 0.00 | 44.90 | 2.24 |
2973 | 3016 | 9.325198 | GTTCCACAATTTGATTTTCTTACCTTT | 57.675 | 29.630 | 2.79 | 0.00 | 0.00 | 3.11 |
2984 | 3027 | 9.308000 | TGATTTTCTTACCTTTGTTATGTCCAT | 57.692 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
3062 | 3105 | 5.560722 | TTCAGAGTGTGAAACCTGGATAA | 57.439 | 39.130 | 0.00 | 0.00 | 42.49 | 1.75 |
3063 | 3106 | 5.560722 | TCAGAGTGTGAAACCTGGATAAA | 57.439 | 39.130 | 0.00 | 0.00 | 34.36 | 1.40 |
3064 | 3107 | 5.935945 | TCAGAGTGTGAAACCTGGATAAAA | 58.064 | 37.500 | 0.00 | 0.00 | 34.36 | 1.52 |
3065 | 3108 | 5.997746 | TCAGAGTGTGAAACCTGGATAAAAG | 59.002 | 40.000 | 0.00 | 0.00 | 34.36 | 2.27 |
3066 | 3109 | 5.182001 | CAGAGTGTGAAACCTGGATAAAAGG | 59.818 | 44.000 | 0.00 | 0.00 | 40.93 | 3.11 |
3067 | 3110 | 4.407365 | AGTGTGAAACCTGGATAAAAGGG | 58.593 | 43.478 | 0.00 | 0.00 | 39.30 | 3.95 |
3068 | 3111 | 3.056821 | GTGTGAAACCTGGATAAAAGGGC | 60.057 | 47.826 | 0.00 | 0.00 | 39.30 | 5.19 |
3069 | 3112 | 3.161866 | GTGAAACCTGGATAAAAGGGCA | 58.838 | 45.455 | 0.00 | 0.00 | 39.30 | 5.36 |
3070 | 3113 | 3.576550 | GTGAAACCTGGATAAAAGGGCAA | 59.423 | 43.478 | 0.00 | 0.00 | 39.30 | 4.52 |
3071 | 3114 | 3.576550 | TGAAACCTGGATAAAAGGGCAAC | 59.423 | 43.478 | 0.00 | 0.00 | 39.30 | 4.17 |
3083 | 3126 | 4.413928 | GGCAACCTGGTGCATGTA | 57.586 | 55.556 | 18.44 | 0.00 | 46.81 | 2.29 |
3084 | 3127 | 2.183409 | GGCAACCTGGTGCATGTAG | 58.817 | 57.895 | 18.44 | 0.00 | 46.81 | 2.74 |
3085 | 3128 | 1.508088 | GCAACCTGGTGCATGTAGC | 59.492 | 57.895 | 6.00 | 6.00 | 44.29 | 3.58 |
3086 | 3129 | 0.962356 | GCAACCTGGTGCATGTAGCT | 60.962 | 55.000 | 14.15 | 0.00 | 44.29 | 3.32 |
3087 | 3130 | 1.089920 | CAACCTGGTGCATGTAGCTC | 58.910 | 55.000 | 14.15 | 0.00 | 45.94 | 4.09 |
3093 | 3136 | 1.450312 | GTGCATGTAGCTCCCGCTT | 60.450 | 57.895 | 0.00 | 0.00 | 46.47 | 4.68 |
3094 | 3137 | 1.450134 | TGCATGTAGCTCCCGCTTG | 60.450 | 57.895 | 0.00 | 0.00 | 46.47 | 4.01 |
3095 | 3138 | 2.828128 | GCATGTAGCTCCCGCTTGC | 61.828 | 63.158 | 0.00 | 0.00 | 46.47 | 4.01 |
3096 | 3139 | 2.202932 | ATGTAGCTCCCGCTTGCG | 60.203 | 61.111 | 8.14 | 8.14 | 46.47 | 4.85 |
3099 | 3142 | 4.819761 | TAGCTCCCGCTTGCGCAG | 62.820 | 66.667 | 11.31 | 6.32 | 46.47 | 5.18 |
3111 | 3154 | 4.785453 | GCGCAGGGTCCAGGGAAG | 62.785 | 72.222 | 0.30 | 0.00 | 0.00 | 3.46 |
3112 | 3155 | 4.101448 | CGCAGGGTCCAGGGAAGG | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
3113 | 3156 | 3.732849 | GCAGGGTCCAGGGAAGGG | 61.733 | 72.222 | 0.00 | 0.00 | 0.00 | 3.95 |
3114 | 3157 | 2.204151 | CAGGGTCCAGGGAAGGGT | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
3115 | 3158 | 2.125225 | AGGGTCCAGGGAAGGGTC | 59.875 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
3116 | 3159 | 3.015753 | GGGTCCAGGGAAGGGTCC | 61.016 | 72.222 | 0.00 | 0.00 | 44.10 | 4.46 |
3117 | 3160 | 3.400054 | GGTCCAGGGAAGGGTCCG | 61.400 | 72.222 | 0.00 | 0.00 | 46.04 | 4.79 |
3118 | 3161 | 2.284405 | GTCCAGGGAAGGGTCCGA | 60.284 | 66.667 | 0.00 | 0.00 | 46.04 | 4.55 |
3119 | 3162 | 2.284405 | TCCAGGGAAGGGTCCGAC | 60.284 | 66.667 | 0.00 | 0.00 | 46.04 | 4.79 |
3120 | 3163 | 3.400054 | CCAGGGAAGGGTCCGACC | 61.400 | 72.222 | 9.30 | 9.30 | 46.04 | 4.79 |
3121 | 3164 | 2.606519 | CAGGGAAGGGTCCGACCA | 60.607 | 66.667 | 19.43 | 0.00 | 46.04 | 4.02 |
3122 | 3165 | 2.606826 | AGGGAAGGGTCCGACCAC | 60.607 | 66.667 | 19.43 | 8.70 | 46.04 | 4.16 |
3123 | 3166 | 2.606826 | GGGAAGGGTCCGACCACT | 60.607 | 66.667 | 19.43 | 10.80 | 46.04 | 4.00 |
3124 | 3167 | 2.222013 | GGGAAGGGTCCGACCACTT | 61.222 | 63.158 | 19.43 | 17.88 | 46.04 | 3.16 |
3125 | 3168 | 1.759236 | GGAAGGGTCCGACCACTTT | 59.241 | 57.895 | 19.43 | 9.96 | 41.02 | 2.66 |
3126 | 3169 | 0.605589 | GGAAGGGTCCGACCACTTTG | 60.606 | 60.000 | 19.43 | 0.00 | 41.02 | 2.77 |
3127 | 3170 | 0.605589 | GAAGGGTCCGACCACTTTGG | 60.606 | 60.000 | 19.43 | 0.00 | 41.02 | 3.28 |
3128 | 3171 | 2.033602 | GGGTCCGACCACTTTGGG | 59.966 | 66.667 | 19.43 | 0.00 | 43.37 | 4.12 |
3129 | 3172 | 2.826003 | GGGTCCGACCACTTTGGGT | 61.826 | 63.158 | 19.43 | 0.00 | 43.37 | 4.51 |
3139 | 3182 | 4.996788 | ACCACTTTGGGTCTATAGTACG | 57.003 | 45.455 | 0.00 | 0.00 | 43.37 | 3.67 |
3140 | 3183 | 3.131755 | ACCACTTTGGGTCTATAGTACGC | 59.868 | 47.826 | 0.00 | 6.13 | 43.37 | 4.42 |
3141 | 3184 | 3.131577 | CCACTTTGGGTCTATAGTACGCA | 59.868 | 47.826 | 13.98 | 13.98 | 37.94 | 5.24 |
3142 | 3185 | 4.360563 | CACTTTGGGTCTATAGTACGCAG | 58.639 | 47.826 | 16.00 | 11.29 | 40.36 | 5.18 |
3143 | 3186 | 3.181478 | ACTTTGGGTCTATAGTACGCAGC | 60.181 | 47.826 | 16.00 | 2.07 | 40.36 | 5.25 |
3144 | 3187 | 1.325355 | TGGGTCTATAGTACGCAGCC | 58.675 | 55.000 | 13.98 | 8.23 | 35.18 | 4.85 |
3145 | 3188 | 1.133575 | TGGGTCTATAGTACGCAGCCT | 60.134 | 52.381 | 13.98 | 0.00 | 35.18 | 4.58 |
3146 | 3189 | 1.962100 | GGGTCTATAGTACGCAGCCTT | 59.038 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
3147 | 3190 | 2.364647 | GGGTCTATAGTACGCAGCCTTT | 59.635 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
3148 | 3191 | 3.552478 | GGGTCTATAGTACGCAGCCTTTC | 60.552 | 52.174 | 0.00 | 0.00 | 0.00 | 2.62 |
3149 | 3192 | 3.552478 | GGTCTATAGTACGCAGCCTTTCC | 60.552 | 52.174 | 0.00 | 0.00 | 0.00 | 3.13 |
3150 | 3193 | 2.626743 | TCTATAGTACGCAGCCTTTCCC | 59.373 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
3151 | 3194 | 1.497161 | ATAGTACGCAGCCTTTCCCT | 58.503 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3152 | 3195 | 2.148446 | TAGTACGCAGCCTTTCCCTA | 57.852 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
3153 | 3196 | 0.535797 | AGTACGCAGCCTTTCCCTAC | 59.464 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3154 | 3197 | 0.248289 | GTACGCAGCCTTTCCCTACA | 59.752 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3155 | 3198 | 1.134491 | GTACGCAGCCTTTCCCTACAT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
3156 | 3199 | 0.328258 | ACGCAGCCTTTCCCTACATT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3157 | 3200 | 1.271926 | ACGCAGCCTTTCCCTACATTT | 60.272 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
3158 | 3201 | 1.401905 | CGCAGCCTTTCCCTACATTTC | 59.598 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
3159 | 3202 | 2.728007 | GCAGCCTTTCCCTACATTTCT | 58.272 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
3160 | 3203 | 2.424956 | GCAGCCTTTCCCTACATTTCTG | 59.575 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3161 | 3204 | 3.690460 | CAGCCTTTCCCTACATTTCTGT | 58.310 | 45.455 | 0.00 | 0.00 | 39.49 | 3.41 |
3162 | 3205 | 4.843728 | CAGCCTTTCCCTACATTTCTGTA | 58.156 | 43.478 | 0.00 | 0.00 | 36.79 | 2.74 |
3163 | 3206 | 5.253330 | CAGCCTTTCCCTACATTTCTGTAA | 58.747 | 41.667 | 0.00 | 0.00 | 37.41 | 2.41 |
3164 | 3207 | 5.355350 | CAGCCTTTCCCTACATTTCTGTAAG | 59.645 | 44.000 | 0.00 | 0.00 | 37.41 | 2.34 |
3165 | 3208 | 5.250774 | AGCCTTTCCCTACATTTCTGTAAGA | 59.749 | 40.000 | 0.00 | 0.00 | 44.68 | 2.10 |
3177 | 3220 | 3.685139 | TCTGTAAGAGGCTGTTTCCAG | 57.315 | 47.619 | 0.90 | 9.48 | 38.67 | 3.86 |
3178 | 3221 | 2.303022 | TCTGTAAGAGGCTGTTTCCAGG | 59.697 | 50.000 | 17.71 | 5.83 | 38.67 | 4.45 |
3179 | 3222 | 2.303022 | CTGTAAGAGGCTGTTTCCAGGA | 59.697 | 50.000 | 0.90 | 0.00 | 35.89 | 3.86 |
3180 | 3223 | 2.038557 | TGTAAGAGGCTGTTTCCAGGAC | 59.961 | 50.000 | 0.90 | 0.00 | 39.22 | 3.85 |
3181 | 3224 | 1.439543 | AAGAGGCTGTTTCCAGGACT | 58.560 | 50.000 | 0.00 | 0.00 | 39.22 | 3.85 |
3182 | 3225 | 1.439543 | AGAGGCTGTTTCCAGGACTT | 58.560 | 50.000 | 0.00 | 0.00 | 39.22 | 3.01 |
3183 | 3226 | 1.072965 | AGAGGCTGTTTCCAGGACTTG | 59.927 | 52.381 | 0.00 | 0.00 | 39.22 | 3.16 |
3184 | 3227 | 1.072331 | GAGGCTGTTTCCAGGACTTGA | 59.928 | 52.381 | 0.00 | 0.00 | 39.22 | 3.02 |
3185 | 3228 | 1.494721 | AGGCTGTTTCCAGGACTTGAA | 59.505 | 47.619 | 0.00 | 0.00 | 39.22 | 2.69 |
3186 | 3229 | 1.609072 | GGCTGTTTCCAGGACTTGAAC | 59.391 | 52.381 | 0.00 | 0.00 | 39.22 | 3.18 |
3187 | 3230 | 1.609072 | GCTGTTTCCAGGACTTGAACC | 59.391 | 52.381 | 0.00 | 0.00 | 39.22 | 3.62 |
3188 | 3231 | 2.749800 | GCTGTTTCCAGGACTTGAACCT | 60.750 | 50.000 | 0.00 | 0.00 | 39.22 | 3.50 |
3200 | 3243 | 6.735556 | AGGACTTGAACCTGGATATGAAATT | 58.264 | 36.000 | 0.00 | 0.00 | 36.30 | 1.82 |
3257 | 3300 | 2.131972 | CACTTAGTTACGTGCTGTGCA | 58.868 | 47.619 | 0.00 | 0.00 | 35.60 | 4.57 |
3314 | 3358 | 7.443879 | TGAGACATTGTGTTTGATAAGCTTACA | 59.556 | 33.333 | 8.70 | 6.50 | 0.00 | 2.41 |
3315 | 3359 | 8.340618 | AGACATTGTGTTTGATAAGCTTACAT | 57.659 | 30.769 | 8.70 | 0.00 | 0.00 | 2.29 |
3316 | 3360 | 9.448438 | AGACATTGTGTTTGATAAGCTTACATA | 57.552 | 29.630 | 8.70 | 0.00 | 0.00 | 2.29 |
3348 | 3392 | 6.902224 | ACTGTAACAAAATTGGCAGTTTTC | 57.098 | 33.333 | 16.60 | 7.52 | 36.86 | 2.29 |
3380 | 3424 | 7.865706 | ATGAGCTTACACTTAGTTATTTGGG | 57.134 | 36.000 | 0.00 | 0.00 | 0.00 | 4.12 |
3456 | 3500 | 3.909732 | AGTGGGAAATTTGGTCTGTTGA | 58.090 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
3535 | 3579 | 7.281040 | ACATTTTCATGATGTCTTGTCTTGT | 57.719 | 32.000 | 0.00 | 0.00 | 32.48 | 3.16 |
3537 | 3581 | 9.017509 | ACATTTTCATGATGTCTTGTCTTGTAT | 57.982 | 29.630 | 0.00 | 0.00 | 32.48 | 2.29 |
3543 | 3587 | 6.968131 | TGATGTCTTGTCTTGTATTGCTAC | 57.032 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
3544 | 3588 | 6.463360 | TGATGTCTTGTCTTGTATTGCTACA | 58.537 | 36.000 | 0.00 | 0.00 | 36.06 | 2.74 |
3545 | 3589 | 7.105588 | TGATGTCTTGTCTTGTATTGCTACAT | 58.894 | 34.615 | 0.00 | 0.00 | 37.68 | 2.29 |
3546 | 3590 | 7.607607 | TGATGTCTTGTCTTGTATTGCTACATT | 59.392 | 33.333 | 0.00 | 0.00 | 37.68 | 2.71 |
3547 | 3591 | 7.744087 | TGTCTTGTCTTGTATTGCTACATTT | 57.256 | 32.000 | 0.00 | 0.00 | 37.68 | 2.32 |
3548 | 3592 | 8.165239 | TGTCTTGTCTTGTATTGCTACATTTT | 57.835 | 30.769 | 0.00 | 0.00 | 37.68 | 1.82 |
3549 | 3593 | 8.289618 | TGTCTTGTCTTGTATTGCTACATTTTC | 58.710 | 33.333 | 0.00 | 0.00 | 37.68 | 2.29 |
3550 | 3594 | 8.289618 | GTCTTGTCTTGTATTGCTACATTTTCA | 58.710 | 33.333 | 0.00 | 0.00 | 37.68 | 2.69 |
3551 | 3595 | 9.013229 | TCTTGTCTTGTATTGCTACATTTTCAT | 57.987 | 29.630 | 0.00 | 0.00 | 37.68 | 2.57 |
3552 | 3596 | 8.969121 | TTGTCTTGTATTGCTACATTTTCATG | 57.031 | 30.769 | 0.00 | 0.00 | 37.68 | 3.07 |
3553 | 3597 | 8.334263 | TGTCTTGTATTGCTACATTTTCATGA | 57.666 | 30.769 | 0.00 | 0.00 | 37.68 | 3.07 |
3554 | 3598 | 8.959548 | TGTCTTGTATTGCTACATTTTCATGAT | 58.040 | 29.630 | 0.00 | 0.00 | 37.68 | 2.45 |
3555 | 3599 | 9.229784 | GTCTTGTATTGCTACATTTTCATGATG | 57.770 | 33.333 | 0.00 | 0.00 | 37.68 | 3.07 |
3556 | 3600 | 7.916977 | TCTTGTATTGCTACATTTTCATGATGC | 59.083 | 33.333 | 0.00 | 0.00 | 37.68 | 3.91 |
3557 | 3601 | 7.098074 | TGTATTGCTACATTTTCATGATGCA | 57.902 | 32.000 | 0.00 | 0.00 | 38.97 | 3.96 |
3558 | 3602 | 7.545489 | TGTATTGCTACATTTTCATGATGCAA | 58.455 | 30.769 | 15.82 | 15.82 | 45.90 | 4.08 |
3559 | 3603 | 6.897259 | ATTGCTACATTTTCATGATGCAAC | 57.103 | 33.333 | 15.81 | 0.00 | 45.34 | 4.17 |
3560 | 3604 | 5.388408 | TGCTACATTTTCATGATGCAACA | 57.612 | 34.783 | 0.00 | 0.00 | 38.34 | 3.33 |
3561 | 3605 | 5.780984 | TGCTACATTTTCATGATGCAACAA | 58.219 | 33.333 | 0.00 | 0.00 | 38.34 | 2.83 |
3562 | 3606 | 6.399743 | TGCTACATTTTCATGATGCAACAAT | 58.600 | 32.000 | 0.00 | 0.00 | 38.34 | 2.71 |
3895 | 3939 | 9.920946 | TTGCTAAAATATATCCTCTCCTTTTGT | 57.079 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
3965 | 4009 | 1.285280 | ATTGACGGGATGACCTTCCA | 58.715 | 50.000 | 4.63 | 0.00 | 36.71 | 3.53 |
4161 | 4205 | 1.364626 | CGAAGGAGCTGCGCATCTTT | 61.365 | 55.000 | 15.89 | 11.62 | 0.00 | 2.52 |
4270 | 4323 | 1.227089 | AGCGACGCATCTGATGACC | 60.227 | 57.895 | 23.70 | 7.84 | 0.00 | 4.02 |
4271 | 4324 | 2.240500 | GCGACGCATCTGATGACCC | 61.241 | 63.158 | 21.30 | 7.52 | 0.00 | 4.46 |
4272 | 4325 | 1.946156 | CGACGCATCTGATGACCCG | 60.946 | 63.158 | 21.30 | 16.32 | 0.00 | 5.28 |
4273 | 4326 | 1.592669 | GACGCATCTGATGACCCGG | 60.593 | 63.158 | 21.30 | 0.00 | 0.00 | 5.73 |
4274 | 4327 | 2.016393 | GACGCATCTGATGACCCGGA | 62.016 | 60.000 | 21.30 | 0.00 | 0.00 | 5.14 |
4275 | 4328 | 1.368950 | CGCATCTGATGACCCGGAT | 59.631 | 57.895 | 21.30 | 0.00 | 32.64 | 4.18 |
4319 | 4372 | 4.959596 | TCAGAGCAATGAATTTGAGAGC | 57.040 | 40.909 | 0.00 | 0.00 | 37.53 | 4.09 |
4374 | 4427 | 7.451566 | ACTGCTTTTATACCCATCCAATATTCC | 59.548 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
4415 | 4469 | 2.697751 | AGACCTTCATCTCTTGGATCCG | 59.302 | 50.000 | 7.39 | 0.00 | 31.27 | 4.18 |
4483 | 4537 | 2.380084 | TCTTATGCTCCGAGCGTTTT | 57.620 | 45.000 | 20.03 | 5.44 | 46.26 | 2.43 |
4762 | 4864 | 1.274728 | CTTGGATCATCGGGGCTAGAG | 59.725 | 57.143 | 0.00 | 0.00 | 0.00 | 2.43 |
4784 | 4886 | 4.280174 | AGTGATCAAAGCACAAAATGAGCT | 59.720 | 37.500 | 0.00 | 0.00 | 45.98 | 4.09 |
4854 | 4957 | 5.595542 | TCAGGCATCCTTCATATTTTGGAAG | 59.404 | 40.000 | 0.00 | 0.00 | 40.11 | 3.46 |
4856 | 4959 | 4.099881 | GGCATCCTTCATATTTTGGAAGCA | 59.900 | 41.667 | 13.36 | 0.00 | 42.80 | 3.91 |
4891 | 4994 | 8.663911 | TGGTTGTTCAAAAGAATTGAATTTCAC | 58.336 | 29.630 | 6.86 | 2.89 | 40.12 | 3.18 |
4897 | 5000 | 9.520204 | TTCAAAAGAATTGAATTTCACTCTCAC | 57.480 | 29.630 | 0.00 | 0.00 | 33.90 | 3.51 |
4898 | 5001 | 8.685427 | TCAAAAGAATTGAATTTCACTCTCACA | 58.315 | 29.630 | 0.00 | 0.00 | 0.00 | 3.58 |
4969 | 5072 | 5.418310 | TTTAACTTTGCCTTCTGTTCGAG | 57.582 | 39.130 | 0.00 | 0.00 | 0.00 | 4.04 |
4974 | 5078 | 0.984230 | TGCCTTCTGTTCGAGGGATT | 59.016 | 50.000 | 0.00 | 0.00 | 41.25 | 3.01 |
4992 | 5096 | 3.629398 | GGATTACTCGGTCCTACGAAAGA | 59.371 | 47.826 | 0.00 | 0.00 | 42.98 | 2.52 |
5013 | 5117 | 1.273606 | AGCTCGCTAAACTCAAGCTCA | 59.726 | 47.619 | 0.00 | 0.00 | 38.96 | 4.26 |
5018 | 5122 | 3.699538 | TCGCTAAACTCAAGCTCATCCTA | 59.300 | 43.478 | 0.00 | 0.00 | 37.85 | 2.94 |
5022 | 5126 | 6.051717 | GCTAAACTCAAGCTCATCCTATTCA | 58.948 | 40.000 | 0.00 | 0.00 | 37.01 | 2.57 |
5044 | 5148 | 3.358775 | TCGACATTCTTTGTGCGTTTTG | 58.641 | 40.909 | 0.00 | 0.00 | 39.18 | 2.44 |
5052 | 5156 | 1.025812 | TTGTGCGTTTTGTTCGGGAT | 58.974 | 45.000 | 0.00 | 0.00 | 0.00 | 3.85 |
5053 | 5157 | 0.309302 | TGTGCGTTTTGTTCGGGATG | 59.691 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5068 | 5172 | 1.070289 | GGGATGTAGGTTCGGATGGTC | 59.930 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
5108 | 5212 | 6.518032 | CGTGTATTCATCAGATCCAGATCCTT | 60.518 | 42.308 | 4.01 | 0.00 | 38.58 | 3.36 |
5111 | 5215 | 4.701651 | TCATCAGATCCAGATCCTTTGG | 57.298 | 45.455 | 4.01 | 0.00 | 38.58 | 3.28 |
5141 | 5245 | 2.616510 | GCAAAGTCAGGTGGAGCTACAT | 60.617 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
5146 | 5250 | 1.559682 | TCAGGTGGAGCTACATTTCCC | 59.440 | 52.381 | 0.00 | 0.00 | 32.29 | 3.97 |
5147 | 5251 | 1.561542 | CAGGTGGAGCTACATTTCCCT | 59.438 | 52.381 | 0.00 | 0.00 | 32.29 | 4.20 |
5258 | 5374 | 0.390998 | GCACCTCTCTGACTTGCCTC | 60.391 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
5274 | 5390 | 8.372459 | TGACTTGCCTCTACTATTTTACAGAAA | 58.628 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
12 | 13 | 5.747565 | ACACGAATCAACAAACACATAGTG | 58.252 | 37.500 | 0.00 | 0.00 | 39.75 | 2.74 |
69 | 72 | 3.626930 | CCGAACCCCCAATTGATTTAGA | 58.373 | 45.455 | 7.12 | 0.00 | 0.00 | 2.10 |
88 | 92 | 4.680237 | TTGAGGTCGCCACTGCCG | 62.680 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
231 | 237 | 4.357279 | GCAGCCAGCCTCACCCTT | 62.357 | 66.667 | 0.00 | 0.00 | 37.23 | 3.95 |
256 | 262 | 3.036429 | GCTTCTCCGCCATCCACCT | 62.036 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
405 | 411 | 0.889994 | GCATGCATCCACCACTTCAA | 59.110 | 50.000 | 14.21 | 0.00 | 0.00 | 2.69 |
453 | 459 | 3.564225 | GTCGGAGAGAAAAAGAAAAGCCA | 59.436 | 43.478 | 0.00 | 0.00 | 36.95 | 4.75 |
476 | 482 | 7.547370 | CCTTTATACCTATGCAGTTAGAGATGC | 59.453 | 40.741 | 0.00 | 0.00 | 42.86 | 3.91 |
605 | 632 | 7.467811 | CGAGCATTTTCTAGCCAAGTAATGAAT | 60.468 | 37.037 | 13.38 | 5.87 | 33.74 | 2.57 |
741 | 768 | 5.346522 | CAAATTAGGGAAGCAGAGCAATTC | 58.653 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
1013 | 1040 | 1.153309 | TCCATGGCATGCTCGTCAG | 60.153 | 57.895 | 22.02 | 6.63 | 0.00 | 3.51 |
1101 | 1128 | 3.120321 | ACAGTTCTAATCCACACGCAA | 57.880 | 42.857 | 0.00 | 0.00 | 0.00 | 4.85 |
1278 | 1305 | 1.927487 | TCCAATGCAGCTGGAATGTT | 58.073 | 45.000 | 20.26 | 4.68 | 40.08 | 2.71 |
1594 | 1621 | 1.690633 | CTTCTAGGCCAGGGCTCCA | 60.691 | 63.158 | 21.26 | 3.99 | 39.70 | 3.86 |
1640 | 1667 | 5.764192 | GCTTTTGAGGCTATGAGATCAAGAT | 59.236 | 40.000 | 0.00 | 0.00 | 33.53 | 2.40 |
1697 | 1724 | 2.696989 | TGTGAATCCATCGCACTCAT | 57.303 | 45.000 | 0.00 | 0.00 | 43.46 | 2.90 |
2176 | 2206 | 1.894466 | CACCCAAATCATTGAGCACCA | 59.106 | 47.619 | 0.00 | 0.00 | 38.94 | 4.17 |
2178 | 2208 | 3.505680 | TGTACACCCAAATCATTGAGCAC | 59.494 | 43.478 | 0.00 | 0.00 | 38.94 | 4.40 |
2208 | 2238 | 6.485984 | CAGATCCACTTTAGCAGCAAGAATAT | 59.514 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
2266 | 2296 | 9.459640 | CAAAGTTAATGGAGCAATATGATGAAG | 57.540 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
2688 | 2725 | 2.953284 | TCCCATAAAACCGGTCAACA | 57.047 | 45.000 | 8.04 | 0.00 | 0.00 | 3.33 |
2743 | 2780 | 5.084519 | TCCCGTATATTAGAGCAACCATCT | 58.915 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2863 | 2905 | 2.395336 | AGAGCATCCTAGCAGATCCA | 57.605 | 50.000 | 0.00 | 0.00 | 36.85 | 3.41 |
2947 | 2990 | 8.887036 | AAGGTAAGAAAATCAAATTGTGGAAC | 57.113 | 30.769 | 0.00 | 0.00 | 37.35 | 3.62 |
2973 | 3016 | 6.883756 | TGTGCTCTATTTTGATGGACATAACA | 59.116 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
3062 | 3105 | 1.152269 | ATGCACCAGGTTGCCCTTT | 60.152 | 52.632 | 10.46 | 0.00 | 42.25 | 3.11 |
3063 | 3106 | 1.909781 | CATGCACCAGGTTGCCCTT | 60.910 | 57.895 | 10.46 | 0.00 | 42.25 | 3.95 |
3064 | 3107 | 1.788518 | TACATGCACCAGGTTGCCCT | 61.789 | 55.000 | 10.46 | 0.00 | 42.25 | 5.19 |
3065 | 3108 | 1.304052 | TACATGCACCAGGTTGCCC | 60.304 | 57.895 | 10.46 | 0.00 | 42.25 | 5.36 |
3066 | 3109 | 1.937546 | GCTACATGCACCAGGTTGCC | 61.938 | 60.000 | 10.46 | 0.00 | 39.88 | 4.52 |
3067 | 3110 | 0.962356 | AGCTACATGCACCAGGTTGC | 60.962 | 55.000 | 8.03 | 8.03 | 44.17 | 4.17 |
3068 | 3111 | 1.089920 | GAGCTACATGCACCAGGTTG | 58.910 | 55.000 | 0.00 | 0.00 | 45.94 | 3.77 |
3069 | 3112 | 3.558674 | GAGCTACATGCACCAGGTT | 57.441 | 52.632 | 0.00 | 0.00 | 45.94 | 3.50 |
3094 | 3137 | 4.785453 | CTTCCCTGGACCCTGCGC | 62.785 | 72.222 | 0.00 | 0.00 | 0.00 | 6.09 |
3095 | 3138 | 4.101448 | CCTTCCCTGGACCCTGCG | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 5.18 |
3096 | 3139 | 3.732849 | CCCTTCCCTGGACCCTGC | 61.733 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
3097 | 3140 | 2.204151 | ACCCTTCCCTGGACCCTG | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
3098 | 3141 | 2.125225 | GACCCTTCCCTGGACCCT | 59.875 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
3099 | 3142 | 3.015753 | GGACCCTTCCCTGGACCC | 61.016 | 72.222 | 0.00 | 0.00 | 35.57 | 4.46 |
3100 | 3143 | 3.400054 | CGGACCCTTCCCTGGACC | 61.400 | 72.222 | 0.00 | 0.00 | 38.99 | 4.46 |
3101 | 3144 | 2.284405 | TCGGACCCTTCCCTGGAC | 60.284 | 66.667 | 0.00 | 0.00 | 38.99 | 4.02 |
3102 | 3145 | 2.284405 | GTCGGACCCTTCCCTGGA | 60.284 | 66.667 | 0.00 | 0.00 | 38.99 | 3.86 |
3103 | 3146 | 3.400054 | GGTCGGACCCTTCCCTGG | 61.400 | 72.222 | 16.55 | 0.00 | 38.99 | 4.45 |
3104 | 3147 | 2.606519 | TGGTCGGACCCTTCCCTG | 60.607 | 66.667 | 23.81 | 0.00 | 38.99 | 4.45 |
3105 | 3148 | 2.606826 | GTGGTCGGACCCTTCCCT | 60.607 | 66.667 | 23.81 | 0.00 | 38.99 | 4.20 |
3106 | 3149 | 1.775934 | AAAGTGGTCGGACCCTTCCC | 61.776 | 60.000 | 23.81 | 7.17 | 38.99 | 3.97 |
3107 | 3150 | 0.605589 | CAAAGTGGTCGGACCCTTCC | 60.606 | 60.000 | 23.81 | 9.51 | 37.50 | 3.46 |
3108 | 3151 | 0.605589 | CCAAAGTGGTCGGACCCTTC | 60.606 | 60.000 | 23.81 | 13.97 | 37.50 | 3.46 |
3109 | 3152 | 1.454539 | CCAAAGTGGTCGGACCCTT | 59.545 | 57.895 | 23.81 | 21.08 | 37.50 | 3.95 |
3110 | 3153 | 2.526046 | CCCAAAGTGGTCGGACCCT | 61.526 | 63.158 | 23.81 | 16.82 | 37.50 | 4.34 |
3111 | 3154 | 2.033602 | CCCAAAGTGGTCGGACCC | 59.966 | 66.667 | 23.81 | 14.91 | 37.50 | 4.46 |
3112 | 3155 | 1.302271 | GACCCAAAGTGGTCGGACC | 60.302 | 63.158 | 20.36 | 20.36 | 44.98 | 4.46 |
3113 | 3156 | 4.373771 | GACCCAAAGTGGTCGGAC | 57.626 | 61.111 | 0.00 | 0.00 | 44.98 | 4.79 |
3118 | 3161 | 3.131755 | GCGTACTATAGACCCAAAGTGGT | 59.868 | 47.826 | 6.78 | 0.00 | 42.79 | 4.16 |
3119 | 3162 | 3.131577 | TGCGTACTATAGACCCAAAGTGG | 59.868 | 47.826 | 6.78 | 0.00 | 37.25 | 4.00 |
3120 | 3163 | 4.360563 | CTGCGTACTATAGACCCAAAGTG | 58.639 | 47.826 | 6.78 | 0.00 | 0.00 | 3.16 |
3121 | 3164 | 3.181478 | GCTGCGTACTATAGACCCAAAGT | 60.181 | 47.826 | 6.78 | 0.00 | 0.00 | 2.66 |
3122 | 3165 | 3.381949 | GCTGCGTACTATAGACCCAAAG | 58.618 | 50.000 | 6.78 | 0.00 | 0.00 | 2.77 |
3123 | 3166 | 2.101917 | GGCTGCGTACTATAGACCCAAA | 59.898 | 50.000 | 6.78 | 0.00 | 0.00 | 3.28 |
3124 | 3167 | 1.684983 | GGCTGCGTACTATAGACCCAA | 59.315 | 52.381 | 6.78 | 0.00 | 0.00 | 4.12 |
3125 | 3168 | 1.133575 | AGGCTGCGTACTATAGACCCA | 60.134 | 52.381 | 6.78 | 0.00 | 0.00 | 4.51 |
3126 | 3169 | 1.618487 | AGGCTGCGTACTATAGACCC | 58.382 | 55.000 | 6.78 | 0.00 | 0.00 | 4.46 |
3127 | 3170 | 3.552478 | GGAAAGGCTGCGTACTATAGACC | 60.552 | 52.174 | 6.78 | 0.00 | 0.00 | 3.85 |
3128 | 3171 | 3.552478 | GGGAAAGGCTGCGTACTATAGAC | 60.552 | 52.174 | 6.78 | 0.00 | 0.00 | 2.59 |
3129 | 3172 | 2.626743 | GGGAAAGGCTGCGTACTATAGA | 59.373 | 50.000 | 6.78 | 0.00 | 0.00 | 1.98 |
3130 | 3173 | 2.628657 | AGGGAAAGGCTGCGTACTATAG | 59.371 | 50.000 | 0.00 | 0.00 | 0.00 | 1.31 |
3131 | 3174 | 2.674420 | AGGGAAAGGCTGCGTACTATA | 58.326 | 47.619 | 0.00 | 0.00 | 0.00 | 1.31 |
3132 | 3175 | 1.497161 | AGGGAAAGGCTGCGTACTAT | 58.503 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
3133 | 3176 | 1.753073 | GTAGGGAAAGGCTGCGTACTA | 59.247 | 52.381 | 0.00 | 0.00 | 34.81 | 1.82 |
3134 | 3177 | 0.535797 | GTAGGGAAAGGCTGCGTACT | 59.464 | 55.000 | 0.00 | 0.00 | 34.81 | 2.73 |
3135 | 3178 | 0.248289 | TGTAGGGAAAGGCTGCGTAC | 59.752 | 55.000 | 0.00 | 0.00 | 37.28 | 3.67 |
3136 | 3179 | 1.200519 | ATGTAGGGAAAGGCTGCGTA | 58.799 | 50.000 | 0.00 | 0.00 | 0.00 | 4.42 |
3137 | 3180 | 0.328258 | AATGTAGGGAAAGGCTGCGT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
3138 | 3181 | 1.401905 | GAAATGTAGGGAAAGGCTGCG | 59.598 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
3139 | 3182 | 2.424956 | CAGAAATGTAGGGAAAGGCTGC | 59.575 | 50.000 | 0.00 | 0.00 | 0.00 | 5.25 |
3140 | 3183 | 3.690460 | ACAGAAATGTAGGGAAAGGCTG | 58.310 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
3141 | 3184 | 5.250774 | TCTTACAGAAATGTAGGGAAAGGCT | 59.749 | 40.000 | 0.00 | 0.00 | 0.00 | 4.58 |
3142 | 3185 | 5.497474 | TCTTACAGAAATGTAGGGAAAGGC | 58.503 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
3143 | 3186 | 6.116126 | CCTCTTACAGAAATGTAGGGAAAGG | 58.884 | 44.000 | 0.00 | 0.00 | 0.00 | 3.11 |
3144 | 3187 | 5.586643 | GCCTCTTACAGAAATGTAGGGAAAG | 59.413 | 44.000 | 0.00 | 0.00 | 0.00 | 2.62 |
3145 | 3188 | 5.250774 | AGCCTCTTACAGAAATGTAGGGAAA | 59.749 | 40.000 | 0.00 | 0.00 | 0.00 | 3.13 |
3146 | 3189 | 4.783227 | AGCCTCTTACAGAAATGTAGGGAA | 59.217 | 41.667 | 0.00 | 0.00 | 0.00 | 3.97 |
3147 | 3190 | 4.162320 | CAGCCTCTTACAGAAATGTAGGGA | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
3148 | 3191 | 4.080863 | ACAGCCTCTTACAGAAATGTAGGG | 60.081 | 45.833 | 0.00 | 0.66 | 0.00 | 3.53 |
3149 | 3192 | 5.091261 | ACAGCCTCTTACAGAAATGTAGG | 57.909 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
3150 | 3193 | 6.092807 | GGAAACAGCCTCTTACAGAAATGTAG | 59.907 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
3151 | 3194 | 5.938125 | GGAAACAGCCTCTTACAGAAATGTA | 59.062 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
3152 | 3195 | 4.762251 | GGAAACAGCCTCTTACAGAAATGT | 59.238 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
3153 | 3196 | 4.761739 | TGGAAACAGCCTCTTACAGAAATG | 59.238 | 41.667 | 0.00 | 0.00 | 35.01 | 2.32 |
3154 | 3197 | 4.985538 | TGGAAACAGCCTCTTACAGAAAT | 58.014 | 39.130 | 0.00 | 0.00 | 35.01 | 2.17 |
3155 | 3198 | 4.431416 | TGGAAACAGCCTCTTACAGAAA | 57.569 | 40.909 | 0.00 | 0.00 | 35.01 | 2.52 |
3169 | 3212 | 2.930950 | CAGGTTCAAGTCCTGGAAACA | 58.069 | 47.619 | 0.00 | 0.00 | 46.03 | 2.83 |
3176 | 3219 | 5.779241 | TTTCATATCCAGGTTCAAGTCCT | 57.221 | 39.130 | 0.00 | 0.00 | 35.45 | 3.85 |
3177 | 3220 | 7.410120 | AAATTTCATATCCAGGTTCAAGTCC | 57.590 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3247 | 3290 | 1.012086 | ATCTGCTTATGCACAGCACG | 58.988 | 50.000 | 16.70 | 13.09 | 45.31 | 5.34 |
3282 | 3325 | 4.198530 | TCAAACACAATGTCTCAAGCTCA | 58.801 | 39.130 | 0.00 | 0.00 | 0.00 | 4.26 |
3283 | 3326 | 4.818534 | TCAAACACAATGTCTCAAGCTC | 57.181 | 40.909 | 0.00 | 0.00 | 0.00 | 4.09 |
3284 | 3327 | 6.569226 | GCTTATCAAACACAATGTCTCAAGCT | 60.569 | 38.462 | 0.00 | 0.00 | 32.75 | 3.74 |
3315 | 3359 | 9.255304 | GCCAATTTTGTTACAGTTGAGAAAATA | 57.745 | 29.630 | 8.17 | 0.00 | 0.00 | 1.40 |
3316 | 3360 | 7.768120 | TGCCAATTTTGTTACAGTTGAGAAAAT | 59.232 | 29.630 | 8.17 | 0.00 | 0.00 | 1.82 |
3317 | 3361 | 7.099764 | TGCCAATTTTGTTACAGTTGAGAAAA | 58.900 | 30.769 | 8.17 | 0.00 | 0.00 | 2.29 |
3318 | 3362 | 6.634805 | TGCCAATTTTGTTACAGTTGAGAAA | 58.365 | 32.000 | 8.17 | 0.00 | 0.00 | 2.52 |
3319 | 3363 | 6.127479 | ACTGCCAATTTTGTTACAGTTGAGAA | 60.127 | 34.615 | 8.17 | 0.00 | 33.78 | 2.87 |
3320 | 3364 | 5.359576 | ACTGCCAATTTTGTTACAGTTGAGA | 59.640 | 36.000 | 8.17 | 0.00 | 33.78 | 3.27 |
3321 | 3365 | 5.591099 | ACTGCCAATTTTGTTACAGTTGAG | 58.409 | 37.500 | 8.17 | 3.25 | 33.78 | 3.02 |
3322 | 3366 | 5.590530 | ACTGCCAATTTTGTTACAGTTGA | 57.409 | 34.783 | 8.17 | 0.00 | 33.78 | 3.18 |
3323 | 3367 | 6.660887 | AAACTGCCAATTTTGTTACAGTTG | 57.339 | 33.333 | 17.15 | 0.00 | 40.67 | 3.16 |
3324 | 3368 | 6.035542 | CGAAAACTGCCAATTTTGTTACAGTT | 59.964 | 34.615 | 13.44 | 13.44 | 41.99 | 3.16 |
3325 | 3369 | 5.518487 | CGAAAACTGCCAATTTTGTTACAGT | 59.482 | 36.000 | 0.00 | 0.00 | 36.87 | 3.55 |
3326 | 3370 | 5.518487 | ACGAAAACTGCCAATTTTGTTACAG | 59.482 | 36.000 | 0.00 | 0.00 | 30.74 | 2.74 |
3327 | 3371 | 5.411781 | ACGAAAACTGCCAATTTTGTTACA | 58.588 | 33.333 | 0.00 | 0.00 | 30.74 | 2.41 |
3328 | 3372 | 5.959652 | ACGAAAACTGCCAATTTTGTTAC | 57.040 | 34.783 | 0.00 | 0.00 | 30.74 | 2.50 |
3355 | 3399 | 8.764558 | TCCCAAATAACTAAGTGTAAGCTCATA | 58.235 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
3380 | 3424 | 2.558359 | ACATGCAAGTGGTTAAAGCCTC | 59.442 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
3535 | 3579 | 7.545489 | TGTTGCATCATGAAAATGTAGCAATA | 58.455 | 30.769 | 16.92 | 13.72 | 40.88 | 1.90 |
3537 | 3581 | 5.780984 | TGTTGCATCATGAAAATGTAGCAA | 58.219 | 33.333 | 0.00 | 12.80 | 38.73 | 3.91 |
3543 | 3587 | 9.060547 | CATCAAAATTGTTGCATCATGAAAATG | 57.939 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
3544 | 3588 | 8.788806 | ACATCAAAATTGTTGCATCATGAAAAT | 58.211 | 25.926 | 0.00 | 0.00 | 32.51 | 1.82 |
3545 | 3589 | 8.155821 | ACATCAAAATTGTTGCATCATGAAAA | 57.844 | 26.923 | 0.00 | 0.00 | 32.51 | 2.29 |
3546 | 3590 | 7.731882 | ACATCAAAATTGTTGCATCATGAAA | 57.268 | 28.000 | 0.00 | 0.00 | 32.51 | 2.69 |
3547 | 3591 | 7.731882 | AACATCAAAATTGTTGCATCATGAA | 57.268 | 28.000 | 0.00 | 0.00 | 36.02 | 2.57 |
3548 | 3592 | 7.577107 | CAAACATCAAAATTGTTGCATCATGA | 58.423 | 30.769 | 0.00 | 0.00 | 37.38 | 3.07 |
3549 | 3593 | 6.304445 | GCAAACATCAAAATTGTTGCATCATG | 59.696 | 34.615 | 11.87 | 0.00 | 37.38 | 3.07 |
3550 | 3594 | 6.017026 | TGCAAACATCAAAATTGTTGCATCAT | 60.017 | 30.769 | 14.24 | 0.00 | 37.38 | 2.45 |
3551 | 3595 | 5.296035 | TGCAAACATCAAAATTGTTGCATCA | 59.704 | 32.000 | 14.24 | 0.00 | 37.38 | 3.07 |
3552 | 3596 | 5.622041 | GTGCAAACATCAAAATTGTTGCATC | 59.378 | 36.000 | 18.62 | 11.94 | 40.12 | 3.91 |
3553 | 3597 | 5.297278 | AGTGCAAACATCAAAATTGTTGCAT | 59.703 | 32.000 | 18.62 | 9.72 | 40.12 | 3.96 |
3554 | 3598 | 4.634883 | AGTGCAAACATCAAAATTGTTGCA | 59.365 | 33.333 | 14.24 | 14.24 | 37.38 | 4.08 |
3555 | 3599 | 5.006941 | AGAGTGCAAACATCAAAATTGTTGC | 59.993 | 36.000 | 10.52 | 10.52 | 37.38 | 4.17 |
3556 | 3600 | 6.592798 | AGAGTGCAAACATCAAAATTGTTG | 57.407 | 33.333 | 0.00 | 3.32 | 37.38 | 3.33 |
3557 | 3601 | 7.464444 | CGAAAGAGTGCAAACATCAAAATTGTT | 60.464 | 33.333 | 0.00 | 0.00 | 38.91 | 2.83 |
3558 | 3602 | 6.019640 | CGAAAGAGTGCAAACATCAAAATTGT | 60.020 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
3559 | 3603 | 6.019640 | ACGAAAGAGTGCAAACATCAAAATTG | 60.020 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
3560 | 3604 | 6.042143 | ACGAAAGAGTGCAAACATCAAAATT | 58.958 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3561 | 3605 | 5.591099 | ACGAAAGAGTGCAAACATCAAAAT | 58.409 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
3562 | 3606 | 4.992688 | ACGAAAGAGTGCAAACATCAAAA | 58.007 | 34.783 | 0.00 | 0.00 | 0.00 | 2.44 |
3895 | 3939 | 9.725019 | TTCATCAAGCTAGAGATAAACAGAAAA | 57.275 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
3965 | 4009 | 2.505819 | ACACTTTCAAGGAGTGGACACT | 59.494 | 45.455 | 4.35 | 4.35 | 46.77 | 3.55 |
4161 | 4205 | 4.223923 | GGATTTCTCTTCACCCTCTTCTCA | 59.776 | 45.833 | 0.00 | 0.00 | 0.00 | 3.27 |
4270 | 4323 | 1.115930 | CCCCCTCAGTAGTCATCCGG | 61.116 | 65.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4271 | 4324 | 0.397254 | ACCCCCTCAGTAGTCATCCG | 60.397 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4272 | 4325 | 2.769602 | TACCCCCTCAGTAGTCATCC | 57.230 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4273 | 4326 | 2.900546 | CCATACCCCCTCAGTAGTCATC | 59.099 | 54.545 | 0.00 | 0.00 | 0.00 | 2.92 |
4274 | 4327 | 2.977808 | CCATACCCCCTCAGTAGTCAT | 58.022 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
4275 | 4328 | 1.691482 | GCCATACCCCCTCAGTAGTCA | 60.691 | 57.143 | 0.00 | 0.00 | 0.00 | 3.41 |
4276 | 4329 | 1.049402 | GCCATACCCCCTCAGTAGTC | 58.951 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4277 | 4330 | 0.642710 | AGCCATACCCCCTCAGTAGT | 59.357 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4278 | 4331 | 1.807814 | AAGCCATACCCCCTCAGTAG | 58.192 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4319 | 4372 | 1.520342 | GCAGGGCTCTAGCGTCAAG | 60.520 | 63.158 | 0.00 | 0.00 | 43.26 | 3.02 |
4374 | 4427 | 5.336744 | GTCTCATCTAGAACAGAAGGAACG | 58.663 | 45.833 | 0.00 | 0.00 | 36.67 | 3.95 |
4415 | 4469 | 5.467063 | CACCAAGTTTCAGAAGTAAGAGGAC | 59.533 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4483 | 4537 | 8.503196 | CATTACACAACTATGCTCAAACAGTAA | 58.497 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
4762 | 4864 | 4.553323 | AGCTCATTTTGTGCTTTGATCAC | 58.447 | 39.130 | 0.00 | 0.00 | 43.76 | 3.06 |
4854 | 4957 | 5.627499 | TTTGAACAACCATCTCTGTATGC | 57.373 | 39.130 | 0.00 | 0.00 | 0.00 | 3.14 |
4856 | 4959 | 8.641498 | ATTCTTTTGAACAACCATCTCTGTAT | 57.359 | 30.769 | 0.00 | 0.00 | 41.77 | 2.29 |
4897 | 5000 | 8.970859 | ATCTCTCATTTATTAAACACCTCCTG | 57.029 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
4911 | 5014 | 7.733773 | TCCTCCACAAACTATCTCTCATTTA | 57.266 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4956 | 5059 | 2.168728 | AGTAATCCCTCGAACAGAAGGC | 59.831 | 50.000 | 0.00 | 0.00 | 30.35 | 4.35 |
4969 | 5072 | 1.972872 | TCGTAGGACCGAGTAATCCC | 58.027 | 55.000 | 0.00 | 0.00 | 35.38 | 3.85 |
4974 | 5078 | 2.421424 | GCTTCTTTCGTAGGACCGAGTA | 59.579 | 50.000 | 0.00 | 0.00 | 38.23 | 2.59 |
4986 | 5090 | 2.987149 | TGAGTTTAGCGAGCTTCTTTCG | 59.013 | 45.455 | 1.86 | 0.00 | 40.85 | 3.46 |
4992 | 5096 | 2.289072 | TGAGCTTGAGTTTAGCGAGCTT | 60.289 | 45.455 | 1.86 | 0.00 | 43.22 | 3.74 |
5013 | 5117 | 6.017605 | GCACAAAGAATGTCGATGAATAGGAT | 60.018 | 38.462 | 0.00 | 0.00 | 41.46 | 3.24 |
5018 | 5122 | 3.436704 | ACGCACAAAGAATGTCGATGAAT | 59.563 | 39.130 | 0.00 | 0.00 | 41.46 | 2.57 |
5022 | 5126 | 3.896648 | AAACGCACAAAGAATGTCGAT | 57.103 | 38.095 | 0.00 | 0.00 | 41.46 | 3.59 |
5044 | 5148 | 0.819582 | TCCGAACCTACATCCCGAAC | 59.180 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
5052 | 5156 | 1.100510 | CTCGACCATCCGAACCTACA | 58.899 | 55.000 | 0.00 | 0.00 | 38.17 | 2.74 |
5053 | 5157 | 1.065251 | GTCTCGACCATCCGAACCTAC | 59.935 | 57.143 | 0.00 | 0.00 | 38.17 | 3.18 |
5068 | 5172 | 1.225881 | CACGTGCTCTCGAGTCTCG | 60.226 | 63.158 | 16.33 | 16.33 | 42.10 | 4.04 |
5108 | 5212 | 0.863144 | GACTTTGCTTCGTACGCCAA | 59.137 | 50.000 | 11.24 | 10.70 | 0.00 | 4.52 |
5111 | 5215 | 0.438830 | CCTGACTTTGCTTCGTACGC | 59.561 | 55.000 | 11.24 | 0.00 | 0.00 | 4.42 |
5141 | 5245 | 0.762418 | TCGAAGGCAAGTCAGGGAAA | 59.238 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
5146 | 5250 | 2.483876 | TCACTTTCGAAGGCAAGTCAG | 58.516 | 47.619 | 7.26 | 0.00 | 30.78 | 3.51 |
5147 | 5251 | 2.612212 | GTTCACTTTCGAAGGCAAGTCA | 59.388 | 45.455 | 7.26 | 0.00 | 30.78 | 3.41 |
5236 | 5352 | 0.034616 | GCAAGTCAGAGAGGTGCAGT | 59.965 | 55.000 | 0.00 | 0.00 | 35.28 | 4.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.