Multiple sequence alignment - TraesCS3B01G348700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G348700 chr3B 100.000 1840 0 0 806 2645 558500083 558501922 0.000000e+00 3398.0
1 TraesCS3B01G348700 chr3B 94.425 574 31 1 1907 2479 549422639 549423212 0.000000e+00 881.0
2 TraesCS3B01G348700 chr3B 98.982 491 5 0 854 1344 549386818 549387308 0.000000e+00 880.0
3 TraesCS3B01G348700 chr3B 100.000 361 0 0 1 361 558499278 558499638 0.000000e+00 667.0
4 TraesCS3B01G348700 chr3B 97.059 374 11 0 1328 1701 549387631 549388004 4.800000e-177 630.0
5 TraesCS3B01G348700 chr3B 95.683 139 6 0 1682 1820 549422498 549422636 9.530000e-55 224.0
6 TraesCS3B01G348700 chr3B 94.815 135 6 1 1 134 18500293 18500159 2.670000e-50 209.0
7 TraesCS3B01G348700 chr3B 93.333 135 8 1 2487 2620 50421203 50421337 5.770000e-47 198.0
8 TraesCS3B01G348700 chr3B 91.667 144 8 4 2473 2615 178387710 178387570 2.080000e-46 196.0
9 TraesCS3B01G348700 chr3B 92.647 136 7 3 1 134 140996395 140996261 2.690000e-45 193.0
10 TraesCS3B01G348700 chr3B 100.000 87 0 0 1824 1910 71403747 71403661 7.580000e-36 161.0
11 TraesCS3B01G348700 chr3B 96.226 53 1 1 806 857 549386133 549386185 4.690000e-13 86.1
12 TraesCS3B01G348700 chr7B 83.216 995 127 15 855 1826 645106314 645105337 0.000000e+00 876.0
13 TraesCS3B01G348700 chr7D 83.164 986 129 15 867 1826 579333359 579332385 0.000000e+00 867.0
14 TraesCS3B01G348700 chr7D 89.123 285 25 5 2038 2320 123248332 123248612 1.510000e-92 350.0
15 TraesCS3B01G348700 chr2B 96.850 127 3 1 1 126 648358485 648358611 7.420000e-51 211.0
16 TraesCS3B01G348700 chr2B 82.727 110 14 5 2117 2222 105247611 105247719 2.800000e-15 93.5
17 TraesCS3B01G348700 chr2B 82.727 110 14 5 2117 2222 109809206 109809314 2.800000e-15 93.5
18 TraesCS3B01G348700 chrUn 95.276 127 5 1 1 126 8595031 8594905 1.610000e-47 200.0
19 TraesCS3B01G348700 chrUn 95.276 127 5 1 1 126 359884311 359884437 1.610000e-47 200.0
20 TraesCS3B01G348700 chrUn 100.000 87 0 0 1824 1910 394816397 394816483 7.580000e-36 161.0
21 TraesCS3B01G348700 chr1A 89.937 159 11 5 2465 2619 485564183 485564026 1.610000e-47 200.0
22 TraesCS3B01G348700 chr1A 92.941 85 5 1 127 211 97263453 97263370 3.580000e-24 122.0
23 TraesCS3B01G348700 chr1A 91.463 82 7 0 130 211 284329170 284329089 2.150000e-21 113.0
24 TraesCS3B01G348700 chr5D 92.701 137 10 0 2490 2626 97580087 97579951 5.770000e-47 198.0
25 TraesCS3B01G348700 chr5A 93.333 135 8 1 1 134 314674122 314674256 5.770000e-47 198.0
26 TraesCS3B01G348700 chr5A 94.845 97 4 1 1824 1920 255621941 255621846 1.640000e-32 150.0
27 TraesCS3B01G348700 chr4B 93.382 136 5 4 2482 2616 16092232 16092364 5.770000e-47 198.0
28 TraesCS3B01G348700 chr4A 93.333 135 8 1 2482 2615 618085026 618085160 5.770000e-47 198.0
29 TraesCS3B01G348700 chr4A 100.000 86 0 0 1825 1910 607427389 607427304 2.730000e-35 159.0
30 TraesCS3B01G348700 chr4A 96.774 93 2 1 1825 1917 742408506 742408597 1.270000e-33 154.0
31 TraesCS3B01G348700 chr2A 94.574 129 6 1 1 128 743376845 743376973 5.770000e-47 198.0
32 TraesCS3B01G348700 chr3A 92.143 140 10 1 2490 2628 19685968 19685829 2.080000e-46 196.0
33 TraesCS3B01G348700 chr2D 94.531 128 6 1 1 127 354382305 354382432 2.080000e-46 196.0
34 TraesCS3B01G348700 chr6B 92.593 135 9 1 1 134 630539382 630539516 2.690000e-45 193.0
35 TraesCS3B01G348700 chr6B 78.534 191 30 9 2038 2224 36458878 36458695 5.980000e-22 115.0
36 TraesCS3B01G348700 chr4D 90.972 144 11 2 2475 2616 99524674 99524817 2.690000e-45 193.0
37 TraesCS3B01G348700 chr4D 93.204 103 4 3 1809 1910 71301584 71301684 5.900000e-32 148.0
38 TraesCS3B01G348700 chr3D 92.647 136 7 3 2487 2620 283321255 283321121 2.690000e-45 193.0
39 TraesCS3B01G348700 chr3D 95.556 90 4 0 127 216 500661910 500661821 7.630000e-31 145.0
40 TraesCS3B01G348700 chr3D 86.667 90 10 2 2133 2222 573144708 573144621 6.030000e-17 99.0
41 TraesCS3B01G348700 chr6A 98.876 89 1 0 1822 1910 484569500 484569588 2.730000e-35 159.0
42 TraesCS3B01G348700 chr1B 97.802 91 2 0 1824 1914 668678529 668678439 9.800000e-35 158.0
43 TraesCS3B01G348700 chr1B 75.916 191 29 12 2038 2222 37206768 37206947 6.070000e-12 82.4
44 TraesCS3B01G348700 chr6D 92.593 108 4 4 1812 1917 2103737 2103632 4.560000e-33 152.0
45 TraesCS3B01G348700 chr6D 95.506 89 2 2 127 213 350938213 350938301 9.870000e-30 141.0
46 TraesCS3B01G348700 chr1D 78.453 181 25 12 2038 2213 151003920 151003749 3.600000e-19 106.0
47 TraesCS3B01G348700 chr7A 82.727 110 14 5 2117 2222 642529170 642529062 2.800000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G348700 chr3B 558499278 558501922 2644 False 2032.500000 3398 100.000000 1 2645 2 chr3B.!!$F4 2644
1 TraesCS3B01G348700 chr3B 549422498 549423212 714 False 552.500000 881 95.054000 1682 2479 2 chr3B.!!$F3 797
2 TraesCS3B01G348700 chr3B 549386133 549388004 1871 False 532.033333 880 97.422333 806 1701 3 chr3B.!!$F2 895
3 TraesCS3B01G348700 chr7B 645105337 645106314 977 True 876.000000 876 83.216000 855 1826 1 chr7B.!!$R1 971
4 TraesCS3B01G348700 chr7D 579332385 579333359 974 True 867.000000 867 83.164000 867 1826 1 chr7D.!!$R1 959

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.033109 CCCAAACCTGAGGATTCCCC 60.033 60.0 4.99 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 2899 1.286849 TCTCATACTCCCTCCGTTCCA 59.713 52.381 0.0 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.214467 GACATTTGTCAGGGTTTGATTTAGA 57.786 36.000 5.84 0.00 44.18 2.10
27 28 7.781324 ACATTTGTCAGGGTTTGATTTAGAT 57.219 32.000 0.00 0.00 38.29 1.98
28 29 7.830739 ACATTTGTCAGGGTTTGATTTAGATC 58.169 34.615 0.00 0.00 38.29 2.75
29 30 6.494893 TTTGTCAGGGTTTGATTTAGATCG 57.505 37.500 0.00 0.00 38.29 3.69
30 31 4.513442 TGTCAGGGTTTGATTTAGATCGG 58.487 43.478 0.00 0.00 38.29 4.18
31 32 3.877508 GTCAGGGTTTGATTTAGATCGGG 59.122 47.826 0.00 0.00 38.29 5.14
32 33 3.778075 TCAGGGTTTGATTTAGATCGGGA 59.222 43.478 0.00 0.00 34.91 5.14
33 34 4.412199 TCAGGGTTTGATTTAGATCGGGAT 59.588 41.667 0.00 0.00 34.91 3.85
34 35 5.104109 TCAGGGTTTGATTTAGATCGGGATT 60.104 40.000 0.00 0.00 34.91 3.01
35 36 5.009010 CAGGGTTTGATTTAGATCGGGATTG 59.991 44.000 0.00 0.00 34.91 2.67
36 37 4.261614 GGGTTTGATTTAGATCGGGATTGC 60.262 45.833 0.00 0.00 34.91 3.56
37 38 4.338118 GGTTTGATTTAGATCGGGATTGCA 59.662 41.667 0.00 0.00 34.91 4.08
38 39 5.010012 GGTTTGATTTAGATCGGGATTGCAT 59.990 40.000 0.00 0.00 34.91 3.96
39 40 6.206634 GGTTTGATTTAGATCGGGATTGCATA 59.793 38.462 0.00 0.00 34.91 3.14
40 41 7.301054 GTTTGATTTAGATCGGGATTGCATAG 58.699 38.462 0.00 0.00 34.91 2.23
41 42 6.114187 TGATTTAGATCGGGATTGCATAGT 57.886 37.500 0.00 0.00 34.91 2.12
42 43 6.533730 TGATTTAGATCGGGATTGCATAGTT 58.466 36.000 0.00 0.00 34.91 2.24
43 44 6.650807 TGATTTAGATCGGGATTGCATAGTTC 59.349 38.462 0.00 0.00 34.91 3.01
44 45 5.545063 TTAGATCGGGATTGCATAGTTCA 57.455 39.130 0.00 0.00 0.00 3.18
45 46 4.000331 AGATCGGGATTGCATAGTTCAG 58.000 45.455 0.00 0.00 0.00 3.02
46 47 2.620251 TCGGGATTGCATAGTTCAGG 57.380 50.000 0.00 0.00 0.00 3.86
47 48 1.140852 TCGGGATTGCATAGTTCAGGG 59.859 52.381 0.00 0.00 0.00 4.45
48 49 1.134098 CGGGATTGCATAGTTCAGGGT 60.134 52.381 0.00 0.00 0.00 4.34
49 50 2.301346 GGGATTGCATAGTTCAGGGTG 58.699 52.381 0.00 0.00 0.00 4.61
50 51 1.678101 GGATTGCATAGTTCAGGGTGC 59.322 52.381 0.00 0.00 38.05 5.01
51 52 2.368439 GATTGCATAGTTCAGGGTGCA 58.632 47.619 0.00 0.00 44.97 4.57
53 54 2.512692 TGCATAGTTCAGGGTGCAAT 57.487 45.000 0.00 0.00 43.83 3.56
54 55 2.368439 TGCATAGTTCAGGGTGCAATC 58.632 47.619 0.00 0.00 43.83 2.67
55 56 1.331756 GCATAGTTCAGGGTGCAATCG 59.668 52.381 0.00 0.00 37.52 3.34
56 57 2.905075 CATAGTTCAGGGTGCAATCGA 58.095 47.619 0.00 0.00 0.00 3.59
57 58 2.380084 TAGTTCAGGGTGCAATCGAC 57.620 50.000 0.00 0.00 0.00 4.20
58 59 0.321653 AGTTCAGGGTGCAATCGACC 60.322 55.000 0.00 0.00 0.00 4.79
59 60 1.375396 TTCAGGGTGCAATCGACCG 60.375 57.895 0.00 0.00 33.89 4.79
60 61 2.796483 TTCAGGGTGCAATCGACCGG 62.796 60.000 0.00 0.00 33.89 5.28
61 62 4.096003 AGGGTGCAATCGACCGGG 62.096 66.667 6.32 0.00 33.89 5.73
62 63 4.090588 GGGTGCAATCGACCGGGA 62.091 66.667 6.32 0.00 33.89 5.14
63 64 2.189521 GGTGCAATCGACCGGGAT 59.810 61.111 6.32 0.00 0.00 3.85
64 65 1.451387 GGTGCAATCGACCGGGATT 60.451 57.895 6.32 2.83 37.11 3.01
65 66 1.029947 GGTGCAATCGACCGGGATTT 61.030 55.000 6.32 0.00 34.50 2.17
66 67 0.377203 GTGCAATCGACCGGGATTTC 59.623 55.000 6.32 0.99 34.50 2.17
67 68 1.087202 TGCAATCGACCGGGATTTCG 61.087 55.000 6.32 6.06 34.50 3.46
72 73 1.647346 TCGACCGGGATTTCGATTTG 58.353 50.000 10.52 0.00 39.29 2.32
73 74 0.655733 CGACCGGGATTTCGATTTGG 59.344 55.000 6.32 0.00 37.43 3.28
74 75 1.741055 CGACCGGGATTTCGATTTGGA 60.741 52.381 6.32 0.00 37.43 3.53
75 76 1.940613 GACCGGGATTTCGATTTGGAG 59.059 52.381 6.32 0.00 0.00 3.86
76 77 1.308998 CCGGGATTTCGATTTGGAGG 58.691 55.000 0.00 0.00 0.00 4.30
77 78 1.408266 CCGGGATTTCGATTTGGAGGT 60.408 52.381 0.00 0.00 0.00 3.85
78 79 2.365582 CGGGATTTCGATTTGGAGGTT 58.634 47.619 0.00 0.00 0.00 3.50
79 80 2.354821 CGGGATTTCGATTTGGAGGTTC 59.645 50.000 0.00 0.00 0.00 3.62
80 81 2.354821 GGGATTTCGATTTGGAGGTTCG 59.645 50.000 0.00 0.00 0.00 3.95
81 82 3.007635 GGATTTCGATTTGGAGGTTCGT 58.992 45.455 0.00 0.00 34.60 3.85
82 83 3.439129 GGATTTCGATTTGGAGGTTCGTT 59.561 43.478 0.00 0.00 34.60 3.85
83 84 4.082949 GGATTTCGATTTGGAGGTTCGTTT 60.083 41.667 0.00 0.00 34.60 3.60
84 85 4.477302 TTTCGATTTGGAGGTTCGTTTC 57.523 40.909 0.00 0.00 34.60 2.78
85 86 2.063266 TCGATTTGGAGGTTCGTTTCG 58.937 47.619 0.00 0.00 34.60 3.46
86 87 1.463528 CGATTTGGAGGTTCGTTTCGC 60.464 52.381 0.00 0.00 0.00 4.70
87 88 0.879090 ATTTGGAGGTTCGTTTCGCC 59.121 50.000 0.00 0.00 0.00 5.54
88 89 1.500512 TTTGGAGGTTCGTTTCGCCG 61.501 55.000 0.00 0.00 0.00 6.46
89 90 2.048877 GGAGGTTCGTTTCGCCGA 60.049 61.111 0.00 0.00 34.52 5.54
90 91 1.665599 GGAGGTTCGTTTCGCCGAA 60.666 57.895 0.00 0.00 43.96 4.30
96 97 4.135570 CGTTTCGCCGAACGTCTA 57.864 55.556 0.00 0.00 45.32 2.59
97 98 1.692729 CGTTTCGCCGAACGTCTAC 59.307 57.895 0.00 0.00 45.32 2.59
98 99 1.692729 GTTTCGCCGAACGTCTACG 59.307 57.895 0.00 0.04 44.19 3.51
99 100 0.725784 GTTTCGCCGAACGTCTACGA 60.726 55.000 9.86 5.31 44.19 3.43
100 101 0.453282 TTTCGCCGAACGTCTACGAG 60.453 55.000 9.86 0.44 44.19 4.18
101 102 1.568612 TTCGCCGAACGTCTACGAGT 61.569 55.000 9.86 0.00 44.19 4.18
102 103 1.154338 CGCCGAACGTCTACGAGTT 60.154 57.895 9.86 0.00 43.02 3.01
103 104 1.124702 CGCCGAACGTCTACGAGTTC 61.125 60.000 9.86 2.88 43.02 3.01
104 105 0.110056 GCCGAACGTCTACGAGTTCA 60.110 55.000 9.86 0.00 44.94 3.18
105 106 1.879646 CCGAACGTCTACGAGTTCAG 58.120 55.000 9.86 1.36 44.94 3.02
106 107 1.465354 CCGAACGTCTACGAGTTCAGG 60.465 57.143 9.86 6.07 44.94 3.86
107 108 1.196354 CGAACGTCTACGAGTTCAGGT 59.804 52.381 9.86 0.00 44.94 4.00
108 109 2.350197 CGAACGTCTACGAGTTCAGGTT 60.350 50.000 9.86 0.00 44.94 3.50
109 110 3.636381 GAACGTCTACGAGTTCAGGTTT 58.364 45.455 9.86 0.00 44.32 3.27
110 111 4.611355 CGAACGTCTACGAGTTCAGGTTTA 60.611 45.833 9.86 0.00 44.94 2.01
111 112 4.836125 ACGTCTACGAGTTCAGGTTTAA 57.164 40.909 9.86 0.00 43.02 1.52
112 113 5.186996 ACGTCTACGAGTTCAGGTTTAAA 57.813 39.130 9.86 0.00 43.02 1.52
113 114 5.591099 ACGTCTACGAGTTCAGGTTTAAAA 58.409 37.500 9.86 0.00 43.02 1.52
114 115 6.218746 ACGTCTACGAGTTCAGGTTTAAAAT 58.781 36.000 9.86 0.00 43.02 1.82
115 116 6.145048 ACGTCTACGAGTTCAGGTTTAAAATG 59.855 38.462 9.86 0.00 43.02 2.32
116 117 6.400727 CGTCTACGAGTTCAGGTTTAAAATGG 60.401 42.308 0.00 0.00 43.02 3.16
117 118 6.647895 GTCTACGAGTTCAGGTTTAAAATGGA 59.352 38.462 0.00 0.00 0.00 3.41
118 119 5.684550 ACGAGTTCAGGTTTAAAATGGAC 57.315 39.130 5.35 5.35 0.00 4.02
119 120 5.374071 ACGAGTTCAGGTTTAAAATGGACT 58.626 37.500 13.10 13.10 35.44 3.85
120 121 6.527423 ACGAGTTCAGGTTTAAAATGGACTA 58.473 36.000 13.18 0.00 32.83 2.59
121 122 7.166167 ACGAGTTCAGGTTTAAAATGGACTAT 58.834 34.615 13.18 5.18 32.83 2.12
122 123 7.664318 ACGAGTTCAGGTTTAAAATGGACTATT 59.336 33.333 13.18 3.98 32.83 1.73
123 124 8.512138 CGAGTTCAGGTTTAAAATGGACTATTT 58.488 33.333 13.18 0.00 40.67 1.40
124 125 9.841880 GAGTTCAGGTTTAAAATGGACTATTTC 57.158 33.333 13.18 1.85 38.01 2.17
125 126 8.803235 AGTTCAGGTTTAAAATGGACTATTTCC 58.197 33.333 12.02 0.00 46.13 3.13
158 159 2.259266 ACATGCATGTGTGTGACAGA 57.741 45.000 30.92 0.00 40.03 3.41
159 160 2.148768 ACATGCATGTGTGTGACAGAG 58.851 47.619 30.92 0.61 40.03 3.35
160 161 1.135774 CATGCATGTGTGTGACAGAGC 60.136 52.381 18.91 0.00 38.23 4.09
161 162 1.223417 TGCATGTGTGTGACAGAGCG 61.223 55.000 0.00 0.00 40.63 5.03
162 163 1.904852 GCATGTGTGTGACAGAGCGG 61.905 60.000 0.00 0.00 38.23 5.52
163 164 1.669115 ATGTGTGTGACAGAGCGGC 60.669 57.895 0.00 0.00 38.23 6.53
164 165 3.044305 GTGTGTGACAGAGCGGCC 61.044 66.667 0.00 0.00 0.00 6.13
165 166 4.662961 TGTGTGACAGAGCGGCCG 62.663 66.667 24.05 24.05 0.00 6.13
180 181 4.735132 CCGCTCGAGACGCCCAAA 62.735 66.667 18.75 0.00 0.00 3.28
181 182 2.509336 CGCTCGAGACGCCCAAAT 60.509 61.111 18.75 0.00 0.00 2.32
182 183 1.226859 CGCTCGAGACGCCCAAATA 60.227 57.895 18.75 0.00 0.00 1.40
183 184 1.209275 CGCTCGAGACGCCCAAATAG 61.209 60.000 18.75 0.00 0.00 1.73
184 185 1.491505 GCTCGAGACGCCCAAATAGC 61.492 60.000 18.75 0.00 0.00 2.97
194 195 4.886925 CAAATAGCGCGCGCCCAC 62.887 66.667 46.98 23.88 43.17 4.61
200 201 4.392576 GCGCGCGCCCACTTTTTA 62.393 61.111 42.83 0.00 34.56 1.52
201 202 2.202298 CGCGCGCCCACTTTTTAG 60.202 61.111 27.72 2.72 0.00 1.85
202 203 2.951458 GCGCGCCCACTTTTTAGT 59.049 55.556 23.24 0.00 0.00 2.24
203 204 1.284715 GCGCGCCCACTTTTTAGTT 59.715 52.632 23.24 0.00 0.00 2.24
204 205 0.318360 GCGCGCCCACTTTTTAGTTT 60.318 50.000 23.24 0.00 0.00 2.66
205 206 1.866471 GCGCGCCCACTTTTTAGTTTT 60.866 47.619 23.24 0.00 0.00 2.43
206 207 2.465855 CGCGCCCACTTTTTAGTTTTT 58.534 42.857 0.00 0.00 0.00 1.94
207 208 3.630101 CGCGCCCACTTTTTAGTTTTTA 58.370 40.909 0.00 0.00 0.00 1.52
208 209 3.666797 CGCGCCCACTTTTTAGTTTTTAG 59.333 43.478 0.00 0.00 0.00 1.85
209 210 3.985279 GCGCCCACTTTTTAGTTTTTAGG 59.015 43.478 0.00 0.00 0.00 2.69
210 211 4.261698 GCGCCCACTTTTTAGTTTTTAGGA 60.262 41.667 0.00 0.00 0.00 2.94
211 212 5.566032 GCGCCCACTTTTTAGTTTTTAGGAT 60.566 40.000 0.00 0.00 0.00 3.24
212 213 6.349528 GCGCCCACTTTTTAGTTTTTAGGATA 60.350 38.462 0.00 0.00 0.00 2.59
213 214 7.595604 CGCCCACTTTTTAGTTTTTAGGATAA 58.404 34.615 0.00 0.00 0.00 1.75
214 215 8.083462 CGCCCACTTTTTAGTTTTTAGGATAAA 58.917 33.333 0.00 0.00 0.00 1.40
215 216 9.767228 GCCCACTTTTTAGTTTTTAGGATAAAA 57.233 29.630 0.00 0.00 0.00 1.52
269 270 8.950007 TTTTTCCTTTTGACCTATGGACTTAT 57.050 30.769 0.00 0.00 0.00 1.73
270 271 8.575649 TTTTCCTTTTGACCTATGGACTTATC 57.424 34.615 0.00 0.00 0.00 1.75
271 272 6.248569 TCCTTTTGACCTATGGACTTATCC 57.751 41.667 0.00 0.00 46.48 2.59
272 273 5.132144 TCCTTTTGACCTATGGACTTATCCC 59.868 44.000 0.00 0.00 45.59 3.85
273 274 5.104109 CCTTTTGACCTATGGACTTATCCCA 60.104 44.000 0.00 0.00 45.59 4.37
274 275 6.395780 TTTTGACCTATGGACTTATCCCAA 57.604 37.500 0.00 0.00 45.59 4.12
275 276 6.395780 TTTGACCTATGGACTTATCCCAAA 57.604 37.500 0.00 0.00 45.59 3.28
276 277 5.367945 TGACCTATGGACTTATCCCAAAC 57.632 43.478 0.00 0.00 45.59 2.93
277 278 4.165372 TGACCTATGGACTTATCCCAAACC 59.835 45.833 0.00 0.00 45.59 3.27
278 279 4.380791 ACCTATGGACTTATCCCAAACCT 58.619 43.478 0.00 0.00 45.59 3.50
279 280 4.166144 ACCTATGGACTTATCCCAAACCTG 59.834 45.833 0.00 0.00 45.59 4.00
280 281 4.412199 CCTATGGACTTATCCCAAACCTGA 59.588 45.833 0.00 0.00 45.59 3.86
281 282 4.510167 ATGGACTTATCCCAAACCTGAG 57.490 45.455 0.00 0.00 45.59 3.35
282 283 2.576191 TGGACTTATCCCAAACCTGAGG 59.424 50.000 0.00 0.00 45.59 3.86
283 284 2.844348 GGACTTATCCCAAACCTGAGGA 59.156 50.000 4.99 0.00 39.39 3.71
284 285 3.459969 GGACTTATCCCAAACCTGAGGAT 59.540 47.826 4.99 0.00 42.97 3.24
285 286 4.079730 GGACTTATCCCAAACCTGAGGATT 60.080 45.833 4.99 0.00 40.83 3.01
286 287 5.117406 ACTTATCCCAAACCTGAGGATTC 57.883 43.478 4.99 0.00 40.83 2.52
287 288 4.079730 ACTTATCCCAAACCTGAGGATTCC 60.080 45.833 4.99 0.00 40.83 3.01
288 289 0.999712 TCCCAAACCTGAGGATTCCC 59.000 55.000 4.99 0.00 0.00 3.97
289 290 0.033109 CCCAAACCTGAGGATTCCCC 60.033 60.000 4.99 0.00 0.00 4.81
290 291 0.033109 CCAAACCTGAGGATTCCCCC 60.033 60.000 4.99 0.00 34.66 5.40
1170 1826 1.067821 GTGGTCGAGACATGGGATCTC 59.932 57.143 5.55 0.00 39.44 2.75
1361 2356 1.618343 TGAAGTCAATGTCGAGGAGCA 59.382 47.619 0.00 0.00 0.00 4.26
1748 2752 5.455525 GTCTCAACAAACATTACAGTGTTGC 59.544 40.000 0.00 0.00 46.65 4.17
1805 2810 4.460382 CCATGCAGTGTCTCCATTTTACTT 59.540 41.667 0.00 0.00 0.00 2.24
1814 2819 4.016444 TCTCCATTTTACTTGGCCATCAC 58.984 43.478 6.09 0.00 34.06 3.06
1826 2831 2.497675 TGGCCATCACTCTCTGAAGTAC 59.502 50.000 0.00 0.00 30.60 2.73
1827 2832 2.763448 GGCCATCACTCTCTGAAGTACT 59.237 50.000 0.00 0.00 30.60 2.73
1828 2833 3.181480 GGCCATCACTCTCTGAAGTACTC 60.181 52.174 0.00 0.00 30.60 2.59
1829 2834 3.181480 GCCATCACTCTCTGAAGTACTCC 60.181 52.174 0.00 0.00 30.60 3.85
1830 2835 3.383185 CCATCACTCTCTGAAGTACTCCC 59.617 52.174 0.00 0.00 30.60 4.30
1831 2836 4.277476 CATCACTCTCTGAAGTACTCCCT 58.723 47.826 0.00 0.00 30.60 4.20
1832 2837 3.958018 TCACTCTCTGAAGTACTCCCTC 58.042 50.000 0.00 0.00 0.00 4.30
1833 2838 3.020984 CACTCTCTGAAGTACTCCCTCC 58.979 54.545 0.00 0.00 0.00 4.30
1834 2839 2.294074 CTCTCTGAAGTACTCCCTCCG 58.706 57.143 0.00 0.00 0.00 4.63
1835 2840 1.634459 TCTCTGAAGTACTCCCTCCGT 59.366 52.381 0.00 0.00 0.00 4.69
1836 2841 2.041350 TCTCTGAAGTACTCCCTCCGTT 59.959 50.000 0.00 0.00 0.00 4.44
1837 2842 2.424246 CTCTGAAGTACTCCCTCCGTTC 59.576 54.545 0.00 0.00 0.00 3.95
1838 2843 1.477295 CTGAAGTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 0.00 3.62
1839 2844 1.203087 TGAAGTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
1840 2845 1.897802 GAAGTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
1841 2846 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
1842 2847 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
1843 2848 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
1844 2849 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
1845 2850 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1846 2851 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1847 2852 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1848 2853 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1849 2854 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1850 2855 4.412199 TCCCTCCGTTCCAAAATAGATGAT 59.588 41.667 0.00 0.00 0.00 2.45
1851 2856 4.757149 CCCTCCGTTCCAAAATAGATGATC 59.243 45.833 0.00 0.00 0.00 2.92
1852 2857 4.757149 CCTCCGTTCCAAAATAGATGATCC 59.243 45.833 0.00 0.00 0.00 3.36
1853 2858 5.366482 TCCGTTCCAAAATAGATGATCCA 57.634 39.130 0.00 0.00 0.00 3.41
1854 2859 5.750524 TCCGTTCCAAAATAGATGATCCAA 58.249 37.500 0.00 0.00 0.00 3.53
1855 2860 5.588648 TCCGTTCCAAAATAGATGATCCAAC 59.411 40.000 0.00 0.00 0.00 3.77
1856 2861 5.590259 CCGTTCCAAAATAGATGATCCAACT 59.410 40.000 0.00 0.00 0.00 3.16
1857 2862 6.095440 CCGTTCCAAAATAGATGATCCAACTT 59.905 38.462 0.00 0.00 0.00 2.66
1858 2863 7.362920 CCGTTCCAAAATAGATGATCCAACTTT 60.363 37.037 0.00 0.00 0.00 2.66
1859 2864 7.485913 CGTTCCAAAATAGATGATCCAACTTTG 59.514 37.037 0.00 0.00 0.00 2.77
1860 2865 8.306761 GTTCCAAAATAGATGATCCAACTTTGT 58.693 33.333 0.00 0.00 0.00 2.83
1861 2866 9.527157 TTCCAAAATAGATGATCCAACTTTGTA 57.473 29.630 0.00 0.00 0.00 2.41
1862 2867 8.956426 TCCAAAATAGATGATCCAACTTTGTAC 58.044 33.333 0.00 0.00 0.00 2.90
1863 2868 8.960591 CCAAAATAGATGATCCAACTTTGTACT 58.039 33.333 0.00 0.00 0.00 2.73
1867 2872 9.614792 AATAGATGATCCAACTTTGTACTAACC 57.385 33.333 0.00 0.00 0.00 2.85
1868 2873 7.259088 AGATGATCCAACTTTGTACTAACCT 57.741 36.000 0.00 0.00 0.00 3.50
1869 2874 7.690256 AGATGATCCAACTTTGTACTAACCTT 58.310 34.615 0.00 0.00 0.00 3.50
1870 2875 8.822805 AGATGATCCAACTTTGTACTAACCTTA 58.177 33.333 0.00 0.00 0.00 2.69
1871 2876 9.099454 GATGATCCAACTTTGTACTAACCTTAG 57.901 37.037 0.00 0.00 36.82 2.18
1872 2877 7.970102 TGATCCAACTTTGTACTAACCTTAGT 58.030 34.615 3.29 3.29 45.39 2.24
1873 2878 9.092338 TGATCCAACTTTGTACTAACCTTAGTA 57.908 33.333 1.45 1.45 43.36 1.82
1884 2889 6.505048 ACTAACCTTAGTACAAAGTTGGGT 57.495 37.500 0.00 0.00 41.92 4.51
1885 2890 6.528321 ACTAACCTTAGTACAAAGTTGGGTC 58.472 40.000 0.00 0.00 41.92 4.46
1886 2891 5.376756 AACCTTAGTACAAAGTTGGGTCA 57.623 39.130 0.00 0.00 0.00 4.02
1887 2892 5.578157 ACCTTAGTACAAAGTTGGGTCAT 57.422 39.130 0.00 0.00 0.00 3.06
1888 2893 5.557866 ACCTTAGTACAAAGTTGGGTCATC 58.442 41.667 0.00 0.00 0.00 2.92
1889 2894 5.309806 ACCTTAGTACAAAGTTGGGTCATCT 59.690 40.000 0.00 0.00 0.00 2.90
1890 2895 6.499350 ACCTTAGTACAAAGTTGGGTCATCTA 59.501 38.462 0.00 0.00 0.00 1.98
1891 2896 7.182206 ACCTTAGTACAAAGTTGGGTCATCTAT 59.818 37.037 0.00 0.00 0.00 1.98
1892 2897 8.047310 CCTTAGTACAAAGTTGGGTCATCTATT 58.953 37.037 0.00 0.00 0.00 1.73
1893 2898 9.449719 CTTAGTACAAAGTTGGGTCATCTATTT 57.550 33.333 0.00 0.00 0.00 1.40
1894 2899 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
1895 2900 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
1896 2901 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
1897 2902 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
1898 2903 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
1899 2904 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
1900 2905 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
1901 2906 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
1902 2907 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
1903 2908 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
1904 2909 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
1905 2910 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1906 2911 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1907 2912 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1908 2913 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1909 2914 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1912 2917 2.241281 TTGGAACGGAGGGAGTATGA 57.759 50.000 0.00 0.00 0.00 2.15
1933 2938 3.391049 AGAGTACACGGAAAGAGCAAAC 58.609 45.455 0.00 0.00 0.00 2.93
1938 2943 4.685169 ACACGGAAAGAGCAAACATATG 57.315 40.909 0.00 0.00 0.00 1.78
1955 2960 2.126346 GCACAACCTTGATGGCGC 60.126 61.111 0.00 0.00 40.22 6.53
2013 3018 5.576447 ATTACCCATGATTTCGTGTTTCC 57.424 39.130 0.00 0.00 0.00 3.13
2022 3027 4.368808 CGTGTTTCCGTGCTGGCG 62.369 66.667 0.00 0.00 37.80 5.69
2027 3032 2.250939 TTTCCGTGCTGGCGTTCTG 61.251 57.895 0.00 0.00 37.80 3.02
2042 3047 5.562705 GCGTTCTGCATAACTAGTGATAC 57.437 43.478 12.51 0.00 45.45 2.24
2044 3049 4.675565 CGTTCTGCATAACTAGTGATACGG 59.324 45.833 12.51 0.00 0.00 4.02
2158 3164 4.726583 ACTCAGGGAAAAGGAAGGTTTAC 58.273 43.478 0.00 0.00 0.00 2.01
2167 3173 9.027202 GGGAAAAGGAAGGTTTACATATACAAA 57.973 33.333 0.00 0.00 0.00 2.83
2186 3192 6.412362 ACAAATTGGCTTGGTATAACAACA 57.588 33.333 0.00 0.00 0.00 3.33
2193 3199 5.645929 TGGCTTGGTATAACAACATACACAG 59.354 40.000 0.00 0.00 33.77 3.66
2276 3282 2.567169 TGTAACAGGAGACATGACTGGG 59.433 50.000 1.41 0.00 36.57 4.45
2280 3286 0.835941 AGGAGACATGACTGGGCATC 59.164 55.000 1.41 0.00 0.00 3.91
2292 3298 5.554070 TGACTGGGCATCATAGATTGTATG 58.446 41.667 0.00 0.00 0.00 2.39
2320 3326 7.483307 TGGTGCATTAATGAAATCTTAGAAGC 58.517 34.615 19.73 0.00 0.00 3.86
2336 3342 2.376518 AGAAGCACAGATTTGAAGGGGA 59.623 45.455 0.00 0.00 0.00 4.81
2391 3397 5.351189 ACCATGTTCAGCAACAAAGAAAAAC 59.649 36.000 0.00 0.00 45.78 2.43
2402 3408 0.467290 AAGAAAAACCAGGCGAGCCA 60.467 50.000 17.18 0.00 38.92 4.75
2426 3432 1.402968 GCACCTAGGCACACATTCATG 59.597 52.381 9.30 0.00 0.00 3.07
2502 3508 9.889128 ATATACTAAATACTACTCTCTCCGTCC 57.111 37.037 0.00 0.00 0.00 4.79
2503 3509 6.251255 ACTAAATACTACTCTCTCCGTCCT 57.749 41.667 0.00 0.00 0.00 3.85
2504 3510 7.372260 ACTAAATACTACTCTCTCCGTCCTA 57.628 40.000 0.00 0.00 0.00 2.94
2505 3511 7.800092 ACTAAATACTACTCTCTCCGTCCTAA 58.200 38.462 0.00 0.00 0.00 2.69
2506 3512 8.270744 ACTAAATACTACTCTCTCCGTCCTAAA 58.729 37.037 0.00 0.00 0.00 1.85
2507 3513 7.951347 AAATACTACTCTCTCCGTCCTAAAA 57.049 36.000 0.00 0.00 0.00 1.52
2508 3514 8.536340 AAATACTACTCTCTCCGTCCTAAAAT 57.464 34.615 0.00 0.00 0.00 1.82
2509 3515 8.536340 AATACTACTCTCTCCGTCCTAAAATT 57.464 34.615 0.00 0.00 0.00 1.82
2510 3516 6.453926 ACTACTCTCTCCGTCCTAAAATTC 57.546 41.667 0.00 0.00 0.00 2.17
2511 3517 6.189133 ACTACTCTCTCCGTCCTAAAATTCT 58.811 40.000 0.00 0.00 0.00 2.40
2512 3518 6.664384 ACTACTCTCTCCGTCCTAAAATTCTT 59.336 38.462 0.00 0.00 0.00 2.52
2513 3519 5.725362 ACTCTCTCCGTCCTAAAATTCTTG 58.275 41.667 0.00 0.00 0.00 3.02
2514 3520 5.246429 ACTCTCTCCGTCCTAAAATTCTTGT 59.754 40.000 0.00 0.00 0.00 3.16
2515 3521 5.721232 TCTCTCCGTCCTAAAATTCTTGTC 58.279 41.667 0.00 0.00 0.00 3.18
2516 3522 5.480772 TCTCTCCGTCCTAAAATTCTTGTCT 59.519 40.000 0.00 0.00 0.00 3.41
2517 3523 6.014499 TCTCTCCGTCCTAAAATTCTTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
2518 3524 7.177921 TCTCTCCGTCCTAAAATTCTTGTCTTA 59.822 37.037 0.00 0.00 0.00 2.10
2519 3525 7.321153 TCTCCGTCCTAAAATTCTTGTCTTAG 58.679 38.462 0.00 0.00 0.00 2.18
2520 3526 7.177921 TCTCCGTCCTAAAATTCTTGTCTTAGA 59.822 37.037 0.00 0.00 0.00 2.10
2521 3527 7.848128 TCCGTCCTAAAATTCTTGTCTTAGAT 58.152 34.615 0.00 0.00 0.00 1.98
2522 3528 8.319146 TCCGTCCTAAAATTCTTGTCTTAGATT 58.681 33.333 0.00 0.00 0.00 2.40
2523 3529 8.604890 CCGTCCTAAAATTCTTGTCTTAGATTC 58.395 37.037 0.00 0.00 0.00 2.52
2524 3530 8.321716 CGTCCTAAAATTCTTGTCTTAGATTCG 58.678 37.037 0.00 0.00 0.00 3.34
2525 3531 9.152595 GTCCTAAAATTCTTGTCTTAGATTCGT 57.847 33.333 0.00 0.00 0.00 3.85
2526 3532 9.367444 TCCTAAAATTCTTGTCTTAGATTCGTC 57.633 33.333 0.00 0.00 0.00 4.20
2527 3533 9.372369 CCTAAAATTCTTGTCTTAGATTCGTCT 57.628 33.333 0.00 0.00 0.00 4.18
2570 3576 7.539712 ACTAAAACATGACTTGATACATCCG 57.460 36.000 0.00 0.00 0.00 4.18
2571 3577 7.103641 ACTAAAACATGACTTGATACATCCGT 58.896 34.615 0.00 0.00 0.00 4.69
2572 3578 8.255206 ACTAAAACATGACTTGATACATCCGTA 58.745 33.333 0.00 0.00 0.00 4.02
2573 3579 9.261180 CTAAAACATGACTTGATACATCCGTAT 57.739 33.333 0.00 0.00 41.16 3.06
2574 3580 8.506168 AAAACATGACTTGATACATCCGTATT 57.494 30.769 0.00 0.00 38.48 1.89
2575 3581 8.506168 AAACATGACTTGATACATCCGTATTT 57.494 30.769 0.00 0.00 38.48 1.40
2576 3582 9.607988 AAACATGACTTGATACATCCGTATTTA 57.392 29.630 0.00 0.00 38.48 1.40
2577 3583 8.818141 ACATGACTTGATACATCCGTATTTAG 57.182 34.615 0.00 0.00 38.48 1.85
2578 3584 8.638873 ACATGACTTGATACATCCGTATTTAGA 58.361 33.333 0.00 0.00 38.48 2.10
2579 3585 8.916654 CATGACTTGATACATCCGTATTTAGAC 58.083 37.037 0.00 0.00 38.48 2.59
2580 3586 8.002984 TGACTTGATACATCCGTATTTAGACA 57.997 34.615 0.00 0.00 38.48 3.41
2581 3587 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
2582 3588 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
2583 3589 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
2602 3608 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
2603 3609 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
2604 3610 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
2605 3611 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
2606 3612 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
2607 3613 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2608 3614 3.827722 AGACAAGAATTTTGGGACGGAA 58.172 40.909 0.00 0.00 0.00 4.30
2609 3615 4.407365 AGACAAGAATTTTGGGACGGAAT 58.593 39.130 0.00 0.00 0.00 3.01
2610 3616 4.218417 AGACAAGAATTTTGGGACGGAATG 59.782 41.667 0.00 0.00 0.00 2.67
2611 3617 4.148838 ACAAGAATTTTGGGACGGAATGA 58.851 39.130 0.00 0.00 0.00 2.57
2612 3618 4.218417 ACAAGAATTTTGGGACGGAATGAG 59.782 41.667 0.00 0.00 0.00 2.90
2613 3619 4.034285 AGAATTTTGGGACGGAATGAGT 57.966 40.909 0.00 0.00 0.00 3.41
2614 3620 5.174037 AGAATTTTGGGACGGAATGAGTA 57.826 39.130 0.00 0.00 0.00 2.59
2615 3621 4.941873 AGAATTTTGGGACGGAATGAGTAC 59.058 41.667 0.00 0.00 0.00 2.73
2616 3622 2.773993 TTTGGGACGGAATGAGTACC 57.226 50.000 0.00 0.00 42.94 3.34
2618 3624 1.874129 TGGGACGGAATGAGTACCAT 58.126 50.000 0.00 0.00 46.98 3.55
2619 3625 3.035055 TGGGACGGAATGAGTACCATA 57.965 47.619 0.00 0.00 46.98 2.74
2620 3626 2.696707 TGGGACGGAATGAGTACCATAC 59.303 50.000 0.00 0.00 46.98 2.39
2621 3627 2.696707 GGGACGGAATGAGTACCATACA 59.303 50.000 0.00 0.00 42.20 2.29
2622 3628 3.133362 GGGACGGAATGAGTACCATACAA 59.867 47.826 0.00 0.00 42.20 2.41
2623 3629 4.369182 GGACGGAATGAGTACCATACAAG 58.631 47.826 0.00 0.00 34.45 3.16
2624 3630 4.142004 GGACGGAATGAGTACCATACAAGT 60.142 45.833 0.00 0.00 34.45 3.16
2625 3631 5.068198 GGACGGAATGAGTACCATACAAGTA 59.932 44.000 0.00 0.00 34.45 2.24
2626 3632 6.145338 ACGGAATGAGTACCATACAAGTAG 57.855 41.667 0.00 0.00 34.45 2.57
2627 3633 4.982916 CGGAATGAGTACCATACAAGTAGC 59.017 45.833 0.00 0.00 34.45 3.58
2628 3634 4.982916 GGAATGAGTACCATACAAGTAGCG 59.017 45.833 0.00 0.00 34.45 4.26
2629 3635 4.585955 ATGAGTACCATACAAGTAGCGG 57.414 45.455 0.00 0.00 32.72 5.52
2630 3636 3.359033 TGAGTACCATACAAGTAGCGGT 58.641 45.455 8.59 8.59 0.00 5.68
2631 3637 4.525996 TGAGTACCATACAAGTAGCGGTA 58.474 43.478 7.06 7.06 0.00 4.02
2632 3638 4.577693 TGAGTACCATACAAGTAGCGGTAG 59.422 45.833 10.11 0.00 31.59 3.18
2633 3639 3.887716 AGTACCATACAAGTAGCGGTAGG 59.112 47.826 10.11 0.00 31.59 3.18
2634 3640 2.037144 ACCATACAAGTAGCGGTAGGG 58.963 52.381 0.00 0.00 44.66 3.53
2635 3641 2.313317 CCATACAAGTAGCGGTAGGGA 58.687 52.381 0.00 0.00 42.46 4.20
2636 3642 2.897969 CCATACAAGTAGCGGTAGGGAT 59.102 50.000 0.00 0.00 42.46 3.85
2637 3643 3.323979 CCATACAAGTAGCGGTAGGGATT 59.676 47.826 0.00 0.00 42.46 3.01
2638 3644 2.981859 ACAAGTAGCGGTAGGGATTG 57.018 50.000 0.00 1.21 0.00 2.67
2639 3645 2.463752 ACAAGTAGCGGTAGGGATTGA 58.536 47.619 12.84 0.00 0.00 2.57
2640 3646 2.431057 ACAAGTAGCGGTAGGGATTGAG 59.569 50.000 12.84 0.00 0.00 3.02
2641 3647 2.431057 CAAGTAGCGGTAGGGATTGAGT 59.569 50.000 0.00 0.00 0.00 3.41
2642 3648 2.308690 AGTAGCGGTAGGGATTGAGTC 58.691 52.381 0.00 0.00 0.00 3.36
2643 3649 2.029623 GTAGCGGTAGGGATTGAGTCA 58.970 52.381 0.00 0.00 0.00 3.41
2644 3650 1.115467 AGCGGTAGGGATTGAGTCAG 58.885 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.214467 TCTAAATCAAACCCTGACAAATGTC 57.786 36.000 6.60 6.60 44.97 3.06
5 6 6.095440 CCGATCTAAATCAAACCCTGACAAAT 59.905 38.462 0.00 0.00 36.69 2.32
6 7 5.414454 CCGATCTAAATCAAACCCTGACAAA 59.586 40.000 0.00 0.00 36.69 2.83
8 9 4.513442 CCGATCTAAATCAAACCCTGACA 58.487 43.478 0.00 0.00 36.69 3.58
10 11 3.778075 TCCCGATCTAAATCAAACCCTGA 59.222 43.478 0.00 0.00 38.81 3.86
11 12 4.150897 TCCCGATCTAAATCAAACCCTG 57.849 45.455 0.00 0.00 31.76 4.45
13 14 4.261614 GCAATCCCGATCTAAATCAAACCC 60.262 45.833 0.00 0.00 31.76 4.11
14 15 4.338118 TGCAATCCCGATCTAAATCAAACC 59.662 41.667 0.00 0.00 31.76 3.27
15 16 5.499139 TGCAATCCCGATCTAAATCAAAC 57.501 39.130 0.00 0.00 31.76 2.93
16 17 6.998074 ACTATGCAATCCCGATCTAAATCAAA 59.002 34.615 0.00 0.00 31.76 2.69
17 18 6.533730 ACTATGCAATCCCGATCTAAATCAA 58.466 36.000 0.00 0.00 31.76 2.57
18 19 6.114187 ACTATGCAATCCCGATCTAAATCA 57.886 37.500 0.00 0.00 31.76 2.57
19 20 6.650807 TGAACTATGCAATCCCGATCTAAATC 59.349 38.462 0.00 0.00 0.00 2.17
20 21 6.533730 TGAACTATGCAATCCCGATCTAAAT 58.466 36.000 0.00 0.00 0.00 1.40
21 22 5.924356 TGAACTATGCAATCCCGATCTAAA 58.076 37.500 0.00 0.00 0.00 1.85
22 23 5.511373 CCTGAACTATGCAATCCCGATCTAA 60.511 44.000 0.00 0.00 0.00 2.10
23 24 4.021104 CCTGAACTATGCAATCCCGATCTA 60.021 45.833 0.00 0.00 0.00 1.98
24 25 3.244353 CCTGAACTATGCAATCCCGATCT 60.244 47.826 0.00 0.00 0.00 2.75
25 26 3.070018 CCTGAACTATGCAATCCCGATC 58.930 50.000 0.00 0.00 0.00 3.69
26 27 2.224621 CCCTGAACTATGCAATCCCGAT 60.225 50.000 0.00 0.00 0.00 4.18
27 28 1.140852 CCCTGAACTATGCAATCCCGA 59.859 52.381 0.00 0.00 0.00 5.14
28 29 1.134098 ACCCTGAACTATGCAATCCCG 60.134 52.381 0.00 0.00 0.00 5.14
29 30 2.301346 CACCCTGAACTATGCAATCCC 58.699 52.381 0.00 0.00 0.00 3.85
30 31 1.678101 GCACCCTGAACTATGCAATCC 59.322 52.381 0.00 0.00 38.00 3.01
31 32 2.368439 TGCACCCTGAACTATGCAATC 58.632 47.619 0.00 0.00 44.72 2.67
32 33 2.512692 TGCACCCTGAACTATGCAAT 57.487 45.000 0.00 0.00 44.72 3.56
34 35 2.368439 GATTGCACCCTGAACTATGCA 58.632 47.619 0.00 0.00 45.94 3.96
35 36 1.331756 CGATTGCACCCTGAACTATGC 59.668 52.381 0.00 0.00 38.59 3.14
36 37 2.609459 GTCGATTGCACCCTGAACTATG 59.391 50.000 0.00 0.00 0.00 2.23
37 38 2.420129 GGTCGATTGCACCCTGAACTAT 60.420 50.000 0.00 0.00 0.00 2.12
38 39 1.066430 GGTCGATTGCACCCTGAACTA 60.066 52.381 0.00 0.00 0.00 2.24
39 40 0.321653 GGTCGATTGCACCCTGAACT 60.322 55.000 0.00 0.00 0.00 3.01
40 41 1.635663 CGGTCGATTGCACCCTGAAC 61.636 60.000 0.00 0.00 0.00 3.18
41 42 1.375396 CGGTCGATTGCACCCTGAA 60.375 57.895 0.00 0.00 0.00 3.02
42 43 2.264480 CGGTCGATTGCACCCTGA 59.736 61.111 0.00 0.00 0.00 3.86
43 44 2.819595 CCGGTCGATTGCACCCTG 60.820 66.667 0.00 0.00 0.00 4.45
44 45 4.096003 CCCGGTCGATTGCACCCT 62.096 66.667 0.00 0.00 0.00 4.34
45 46 2.886730 AATCCCGGTCGATTGCACCC 62.887 60.000 0.00 0.00 31.19 4.61
46 47 1.029947 AAATCCCGGTCGATTGCACC 61.030 55.000 6.70 0.00 32.75 5.01
47 48 0.377203 GAAATCCCGGTCGATTGCAC 59.623 55.000 6.70 0.16 32.75 4.57
48 49 1.087202 CGAAATCCCGGTCGATTGCA 61.087 55.000 6.34 0.00 39.64 4.08
49 50 0.808453 TCGAAATCCCGGTCGATTGC 60.808 55.000 10.52 6.13 41.13 3.56
50 51 3.355816 TCGAAATCCCGGTCGATTG 57.644 52.632 10.52 0.00 41.13 2.67
54 55 0.655733 CCAAATCGAAATCCCGGTCG 59.344 55.000 5.87 5.87 38.62 4.79
55 56 1.940613 CTCCAAATCGAAATCCCGGTC 59.059 52.381 0.00 0.00 0.00 4.79
56 57 1.408266 CCTCCAAATCGAAATCCCGGT 60.408 52.381 0.00 0.00 0.00 5.28
57 58 1.308998 CCTCCAAATCGAAATCCCGG 58.691 55.000 0.00 0.00 0.00 5.73
58 59 2.038387 ACCTCCAAATCGAAATCCCG 57.962 50.000 0.00 0.00 0.00 5.14
59 60 2.354821 CGAACCTCCAAATCGAAATCCC 59.645 50.000 0.00 0.00 38.82 3.85
60 61 3.007635 ACGAACCTCCAAATCGAAATCC 58.992 45.455 1.03 0.00 39.73 3.01
61 62 4.680171 AACGAACCTCCAAATCGAAATC 57.320 40.909 1.03 0.00 39.73 2.17
62 63 4.378046 CGAAACGAACCTCCAAATCGAAAT 60.378 41.667 1.03 0.00 39.73 2.17
63 64 3.059461 CGAAACGAACCTCCAAATCGAAA 60.059 43.478 1.03 0.00 39.73 3.46
64 65 2.477375 CGAAACGAACCTCCAAATCGAA 59.523 45.455 1.03 0.00 39.73 3.71
65 66 2.063266 CGAAACGAACCTCCAAATCGA 58.937 47.619 1.03 0.00 39.73 3.59
66 67 1.463528 GCGAAACGAACCTCCAAATCG 60.464 52.381 0.00 0.00 42.05 3.34
67 68 1.135774 GGCGAAACGAACCTCCAAATC 60.136 52.381 0.00 0.00 0.00 2.17
68 69 0.879090 GGCGAAACGAACCTCCAAAT 59.121 50.000 0.00 0.00 0.00 2.32
69 70 1.500512 CGGCGAAACGAACCTCCAAA 61.501 55.000 0.00 0.00 35.47 3.28
70 71 1.957186 CGGCGAAACGAACCTCCAA 60.957 57.895 0.00 0.00 35.47 3.53
71 72 2.356553 CGGCGAAACGAACCTCCA 60.357 61.111 0.00 0.00 35.47 3.86
72 73 1.665599 TTCGGCGAAACGAACCTCC 60.666 57.895 21.53 0.00 46.68 4.30
73 74 3.941035 TTCGGCGAAACGAACCTC 58.059 55.556 21.53 0.00 46.68 3.85
80 81 0.725784 TCGTAGACGTTCGGCGAAAC 60.726 55.000 25.48 16.95 44.77 2.78
81 82 0.453282 CTCGTAGACGTTCGGCGAAA 60.453 55.000 25.48 5.23 44.77 3.46
82 83 1.133253 CTCGTAGACGTTCGGCGAA 59.867 57.895 19.83 19.83 44.77 4.70
83 84 1.568612 AACTCGTAGACGTTCGGCGA 61.569 55.000 4.99 4.99 44.77 5.54
84 85 3.685163 TGAACTCGTAGACGTTCGGCG 62.685 57.143 0.00 0.00 42.89 6.46
85 86 0.110056 TGAACTCGTAGACGTTCGGC 60.110 55.000 1.46 0.00 42.89 5.54
86 87 1.465354 CCTGAACTCGTAGACGTTCGG 60.465 57.143 1.46 4.87 42.89 4.30
87 88 1.196354 ACCTGAACTCGTAGACGTTCG 59.804 52.381 1.46 0.00 42.89 3.95
88 89 2.985406 ACCTGAACTCGTAGACGTTC 57.015 50.000 1.46 0.62 41.52 3.95
89 90 3.722728 AAACCTGAACTCGTAGACGTT 57.277 42.857 1.46 0.00 40.80 3.99
90 91 4.836125 TTAAACCTGAACTCGTAGACGT 57.164 40.909 1.46 0.00 40.80 4.34
91 92 6.400727 CCATTTTAAACCTGAACTCGTAGACG 60.401 42.308 0.00 0.00 41.45 4.18
92 93 6.647895 TCCATTTTAAACCTGAACTCGTAGAC 59.352 38.462 0.00 0.00 0.00 2.59
93 94 6.647895 GTCCATTTTAAACCTGAACTCGTAGA 59.352 38.462 0.00 0.00 0.00 2.59
94 95 6.649557 AGTCCATTTTAAACCTGAACTCGTAG 59.350 38.462 0.00 0.00 0.00 3.51
95 96 6.527423 AGTCCATTTTAAACCTGAACTCGTA 58.473 36.000 0.00 0.00 0.00 3.43
96 97 5.374071 AGTCCATTTTAAACCTGAACTCGT 58.626 37.500 0.00 0.00 0.00 4.18
97 98 5.941948 AGTCCATTTTAAACCTGAACTCG 57.058 39.130 0.00 0.00 0.00 4.18
98 99 9.841880 GAAATAGTCCATTTTAAACCTGAACTC 57.158 33.333 0.00 0.00 36.96 3.01
99 100 8.803235 GGAAATAGTCCATTTTAAACCTGAACT 58.197 33.333 0.00 0.00 46.97 3.01
100 101 8.981724 GGAAATAGTCCATTTTAAACCTGAAC 57.018 34.615 0.00 0.00 46.97 3.18
139 140 2.148768 CTCTGTCACACACATGCATGT 58.851 47.619 26.61 26.61 42.84 3.21
140 141 1.135774 GCTCTGTCACACACATGCATG 60.136 52.381 25.09 25.09 35.56 4.06
141 142 1.162698 GCTCTGTCACACACATGCAT 58.837 50.000 0.00 0.00 35.56 3.96
142 143 1.223417 CGCTCTGTCACACACATGCA 61.223 55.000 0.00 0.00 35.33 3.96
143 144 1.494628 CGCTCTGTCACACACATGC 59.505 57.895 0.00 0.00 33.23 4.06
144 145 1.904852 GCCGCTCTGTCACACACATG 61.905 60.000 0.00 0.00 33.23 3.21
145 146 1.669115 GCCGCTCTGTCACACACAT 60.669 57.895 0.00 0.00 33.23 3.21
146 147 2.280119 GCCGCTCTGTCACACACA 60.280 61.111 0.00 0.00 0.00 3.72
147 148 3.044305 GGCCGCTCTGTCACACAC 61.044 66.667 0.00 0.00 0.00 3.82
148 149 4.662961 CGGCCGCTCTGTCACACA 62.663 66.667 14.67 0.00 0.00 3.72
163 164 2.622903 TATTTGGGCGTCTCGAGCGG 62.623 60.000 23.77 13.06 35.00 5.52
164 165 1.209275 CTATTTGGGCGTCTCGAGCG 61.209 60.000 20.16 20.16 35.00 5.03
165 166 1.491505 GCTATTTGGGCGTCTCGAGC 61.492 60.000 7.81 1.89 0.00 5.03
166 167 1.209275 CGCTATTTGGGCGTCTCGAG 61.209 60.000 5.93 5.93 46.37 4.04
167 168 1.226859 CGCTATTTGGGCGTCTCGA 60.227 57.895 0.00 0.00 46.37 4.04
168 169 3.309675 CGCTATTTGGGCGTCTCG 58.690 61.111 0.00 0.00 46.37 4.04
183 184 4.392576 TAAAAAGTGGGCGCGCGC 62.393 61.111 44.40 44.40 41.06 6.86
184 185 2.202298 CTAAAAAGTGGGCGCGCG 60.202 61.111 28.44 28.44 0.00 6.86
185 186 0.318360 AAACTAAAAAGTGGGCGCGC 60.318 50.000 25.94 25.94 0.00 6.86
186 187 2.128367 AAAACTAAAAAGTGGGCGCG 57.872 45.000 0.00 0.00 0.00 6.86
187 188 3.985279 CCTAAAAACTAAAAAGTGGGCGC 59.015 43.478 0.00 0.00 0.00 6.53
188 189 5.441709 TCCTAAAAACTAAAAAGTGGGCG 57.558 39.130 0.00 0.00 0.00 6.13
189 190 9.767228 TTTTATCCTAAAAACTAAAAAGTGGGC 57.233 29.630 0.00 0.00 0.00 5.36
244 245 8.950007 ATAAGTCCATAGGTCAAAAGGAAAAA 57.050 30.769 0.00 0.00 0.00 1.94
245 246 7.614192 GGATAAGTCCATAGGTCAAAAGGAAAA 59.386 37.037 0.00 0.00 44.42 2.29
246 247 7.116736 GGATAAGTCCATAGGTCAAAAGGAAA 58.883 38.462 0.00 0.00 44.42 3.13
247 248 6.659824 GGATAAGTCCATAGGTCAAAAGGAA 58.340 40.000 0.00 0.00 44.42 3.36
248 249 6.248569 GGATAAGTCCATAGGTCAAAAGGA 57.751 41.667 0.00 0.00 44.42 3.36
262 263 2.844348 TCCTCAGGTTTGGGATAAGTCC 59.156 50.000 0.00 0.00 44.29 3.85
263 264 4.779993 ATCCTCAGGTTTGGGATAAGTC 57.220 45.455 0.00 0.00 38.00 3.01
264 265 4.079730 GGAATCCTCAGGTTTGGGATAAGT 60.080 45.833 0.00 0.00 38.73 2.24
265 266 4.464947 GGAATCCTCAGGTTTGGGATAAG 58.535 47.826 0.00 0.00 38.73 1.73
266 267 3.204382 GGGAATCCTCAGGTTTGGGATAA 59.796 47.826 0.00 0.00 38.73 1.75
267 268 2.783510 GGGAATCCTCAGGTTTGGGATA 59.216 50.000 0.00 0.00 38.73 2.59
268 269 1.570979 GGGAATCCTCAGGTTTGGGAT 59.429 52.381 0.00 0.00 41.09 3.85
269 270 0.999712 GGGAATCCTCAGGTTTGGGA 59.000 55.000 0.00 0.00 0.00 4.37
270 271 0.033109 GGGGAATCCTCAGGTTTGGG 60.033 60.000 0.00 0.00 0.00 4.12
271 272 0.033109 GGGGGAATCCTCAGGTTTGG 60.033 60.000 0.00 0.00 32.39 3.28
272 273 3.596362 GGGGGAATCCTCAGGTTTG 57.404 57.895 0.00 0.00 32.39 2.93
823 824 6.294473 CGGTAGTAGGTTCTAGGTTATCTCA 58.706 44.000 0.00 0.00 0.00 3.27
1170 1826 4.418392 GTTCATGTGCTGGCTCTTTATTG 58.582 43.478 0.00 0.00 0.00 1.90
1361 2356 4.872691 CAGAACTCAGTCTGACAAGTTTGT 59.127 41.667 21.71 13.72 46.76 2.83
1651 2646 2.607187 CCACAACCTGACGAGATGTAC 58.393 52.381 0.00 0.00 0.00 2.90
1805 2810 1.649321 ACTTCAGAGAGTGATGGCCA 58.351 50.000 8.56 8.56 35.13 5.36
1814 2819 2.294074 CGGAGGGAGTACTTCAGAGAG 58.706 57.143 2.92 0.00 0.00 3.20
1826 2831 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1827 2832 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1828 2833 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
1829 2834 4.757149 GGATCATCTATTTTGGAACGGAGG 59.243 45.833 0.00 0.00 0.00 4.30
1830 2835 5.368145 TGGATCATCTATTTTGGAACGGAG 58.632 41.667 0.00 0.00 0.00 4.63
1831 2836 5.366482 TGGATCATCTATTTTGGAACGGA 57.634 39.130 0.00 0.00 0.00 4.69
1832 2837 5.590259 AGTTGGATCATCTATTTTGGAACGG 59.410 40.000 0.00 0.00 0.00 4.44
1833 2838 6.683974 AGTTGGATCATCTATTTTGGAACG 57.316 37.500 0.00 0.00 0.00 3.95
1834 2839 8.306761 ACAAAGTTGGATCATCTATTTTGGAAC 58.693 33.333 11.01 0.00 0.00 3.62
1835 2840 8.421249 ACAAAGTTGGATCATCTATTTTGGAA 57.579 30.769 11.01 0.00 0.00 3.53
1836 2841 8.956426 GTACAAAGTTGGATCATCTATTTTGGA 58.044 33.333 11.01 2.87 0.00 3.53
1837 2842 8.960591 AGTACAAAGTTGGATCATCTATTTTGG 58.039 33.333 11.01 0.00 0.00 3.28
1841 2846 9.614792 GGTTAGTACAAAGTTGGATCATCTATT 57.385 33.333 0.00 0.00 0.00 1.73
1842 2847 8.993424 AGGTTAGTACAAAGTTGGATCATCTAT 58.007 33.333 0.00 0.00 0.00 1.98
1843 2848 8.375493 AGGTTAGTACAAAGTTGGATCATCTA 57.625 34.615 0.00 0.00 0.00 1.98
1844 2849 7.259088 AGGTTAGTACAAAGTTGGATCATCT 57.741 36.000 0.00 0.00 0.00 2.90
1845 2850 7.923414 AAGGTTAGTACAAAGTTGGATCATC 57.077 36.000 0.00 0.00 0.00 2.92
1846 2851 8.603304 ACTAAGGTTAGTACAAAGTTGGATCAT 58.397 33.333 0.32 0.00 41.92 2.45
1847 2852 7.970102 ACTAAGGTTAGTACAAAGTTGGATCA 58.030 34.615 0.32 0.00 41.92 2.92
1860 2865 7.289782 TGACCCAACTTTGTACTAAGGTTAGTA 59.710 37.037 19.08 5.64 43.36 1.82
1861 2866 6.100134 TGACCCAACTTTGTACTAAGGTTAGT 59.900 38.462 19.08 12.61 45.39 2.24
1862 2867 6.527423 TGACCCAACTTTGTACTAAGGTTAG 58.473 40.000 19.08 9.91 36.82 2.34
1863 2868 6.497624 TGACCCAACTTTGTACTAAGGTTA 57.502 37.500 19.08 4.72 0.00 2.85
1864 2869 5.376756 TGACCCAACTTTGTACTAAGGTT 57.623 39.130 19.08 9.89 0.00 3.50
1865 2870 5.309806 AGATGACCCAACTTTGTACTAAGGT 59.690 40.000 19.08 11.48 0.00 3.50
1866 2871 5.805728 AGATGACCCAACTTTGTACTAAGG 58.194 41.667 19.08 6.74 0.00 2.69
1867 2872 9.449719 AAATAGATGACCCAACTTTGTACTAAG 57.550 33.333 14.42 14.42 0.00 2.18
1868 2873 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
1869 2874 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
1870 2875 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
1871 2876 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
1872 2877 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
1873 2878 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
1874 2879 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
1875 2880 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
1876 2881 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
1877 2882 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
1878 2883 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
1879 2884 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
1880 2885 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
1881 2886 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
1882 2887 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
1883 2888 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1884 2889 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1885 2890 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1886 2891 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1887 2892 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1888 2893 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1889 2894 4.717778 TCATACTCCCTCCGTTCCAAAATA 59.282 41.667 0.00 0.00 0.00 1.40
1890 2895 3.521937 TCATACTCCCTCCGTTCCAAAAT 59.478 43.478 0.00 0.00 0.00 1.82
1891 2896 2.907696 TCATACTCCCTCCGTTCCAAAA 59.092 45.455 0.00 0.00 0.00 2.44
1892 2897 2.500098 CTCATACTCCCTCCGTTCCAAA 59.500 50.000 0.00 0.00 0.00 3.28
1893 2898 2.108168 CTCATACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
1894 2899 1.286849 TCTCATACTCCCTCCGTTCCA 59.713 52.381 0.00 0.00 0.00 3.53
1895 2900 1.957877 CTCTCATACTCCCTCCGTTCC 59.042 57.143 0.00 0.00 0.00 3.62
1896 2901 2.657143 ACTCTCATACTCCCTCCGTTC 58.343 52.381 0.00 0.00 0.00 3.95
1897 2902 2.830651 ACTCTCATACTCCCTCCGTT 57.169 50.000 0.00 0.00 0.00 4.44
1898 2903 2.508716 TGTACTCTCATACTCCCTCCGT 59.491 50.000 0.00 0.00 0.00 4.69
1899 2904 2.879646 GTGTACTCTCATACTCCCTCCG 59.120 54.545 0.00 0.00 0.00 4.63
1900 2905 2.879646 CGTGTACTCTCATACTCCCTCC 59.120 54.545 0.00 0.00 0.00 4.30
1901 2906 2.879646 CCGTGTACTCTCATACTCCCTC 59.120 54.545 0.00 0.00 0.00 4.30
1902 2907 2.508716 TCCGTGTACTCTCATACTCCCT 59.491 50.000 0.00 0.00 0.00 4.20
1903 2908 2.928334 TCCGTGTACTCTCATACTCCC 58.072 52.381 0.00 0.00 0.00 4.30
1904 2909 4.639310 TCTTTCCGTGTACTCTCATACTCC 59.361 45.833 0.00 0.00 0.00 3.85
1905 2910 5.731126 GCTCTTTCCGTGTACTCTCATACTC 60.731 48.000 0.00 0.00 0.00 2.59
1906 2911 4.096682 GCTCTTTCCGTGTACTCTCATACT 59.903 45.833 0.00 0.00 0.00 2.12
1907 2912 4.142447 TGCTCTTTCCGTGTACTCTCATAC 60.142 45.833 0.00 0.00 0.00 2.39
1908 2913 4.014406 TGCTCTTTCCGTGTACTCTCATA 58.986 43.478 0.00 0.00 0.00 2.15
1909 2914 2.826128 TGCTCTTTCCGTGTACTCTCAT 59.174 45.455 0.00 0.00 0.00 2.90
1912 2917 3.181469 TGTTTGCTCTTTCCGTGTACTCT 60.181 43.478 0.00 0.00 0.00 3.24
1933 2938 2.542205 CGCCATCAAGGTTGTGCATATG 60.542 50.000 0.00 0.00 40.61 1.78
1938 2943 2.126346 GCGCCATCAAGGTTGTGC 60.126 61.111 0.00 0.00 40.61 4.57
1955 2960 1.442769 AATAAGCACACAGGCACGAG 58.557 50.000 0.00 0.00 35.83 4.18
2005 3010 4.368808 CGCCAGCACGGAAACACG 62.369 66.667 0.00 0.00 36.56 4.49
2013 3018 1.634757 TTATGCAGAACGCCAGCACG 61.635 55.000 0.00 0.00 41.60 5.34
2022 3027 5.589192 ACCGTATCACTAGTTATGCAGAAC 58.411 41.667 16.35 16.35 0.00 3.01
2057 3063 9.979897 ACTATAATATGTTTCATGTGCCCATAT 57.020 29.630 0.00 0.00 31.76 1.78
2167 3173 6.661377 TGTGTATGTTGTTATACCAAGCCAAT 59.339 34.615 0.00 0.00 33.56 3.16
2205 3211 6.862209 TGGCTGATTGATTGGTTGTATTTAC 58.138 36.000 0.00 0.00 0.00 2.01
2214 3220 3.159213 TGTCTTGGCTGATTGATTGGT 57.841 42.857 0.00 0.00 0.00 3.67
2276 3282 5.163683 GCACCATCCATACAATCTATGATGC 60.164 44.000 0.00 0.00 0.00 3.91
2280 3286 6.829229 AATGCACCATCCATACAATCTATG 57.171 37.500 0.00 0.00 0.00 2.23
2292 3298 8.169977 TCTAAGATTTCATTAATGCACCATCC 57.830 34.615 10.76 0.00 0.00 3.51
2426 3432 8.553459 TGAAATCTTTGTTATCACTCTTCTCC 57.447 34.615 0.00 0.00 0.00 3.71
2479 3485 7.372260 AGGACGGAGAGAGTAGTATTTAGTA 57.628 40.000 0.00 0.00 0.00 1.82
2480 3486 6.251255 AGGACGGAGAGAGTAGTATTTAGT 57.749 41.667 0.00 0.00 0.00 2.24
2481 3487 8.674263 TTTAGGACGGAGAGAGTAGTATTTAG 57.326 38.462 0.00 0.00 0.00 1.85
2482 3488 9.638176 ATTTTAGGACGGAGAGAGTAGTATTTA 57.362 33.333 0.00 0.00 0.00 1.40
2483 3489 7.951347 TTTTAGGACGGAGAGAGTAGTATTT 57.049 36.000 0.00 0.00 0.00 1.40
2484 3490 8.536340 AATTTTAGGACGGAGAGAGTAGTATT 57.464 34.615 0.00 0.00 0.00 1.89
2485 3491 8.000127 AGAATTTTAGGACGGAGAGAGTAGTAT 59.000 37.037 0.00 0.00 0.00 2.12
2486 3492 7.344913 AGAATTTTAGGACGGAGAGAGTAGTA 58.655 38.462 0.00 0.00 0.00 1.82
2487 3493 6.189133 AGAATTTTAGGACGGAGAGAGTAGT 58.811 40.000 0.00 0.00 0.00 2.73
2488 3494 6.702716 AGAATTTTAGGACGGAGAGAGTAG 57.297 41.667 0.00 0.00 0.00 2.57
2489 3495 6.436532 ACAAGAATTTTAGGACGGAGAGAGTA 59.563 38.462 0.00 0.00 0.00 2.59
2490 3496 5.246429 ACAAGAATTTTAGGACGGAGAGAGT 59.754 40.000 0.00 0.00 0.00 3.24
2491 3497 5.725362 ACAAGAATTTTAGGACGGAGAGAG 58.275 41.667 0.00 0.00 0.00 3.20
2492 3498 5.480772 AGACAAGAATTTTAGGACGGAGAGA 59.519 40.000 0.00 0.00 0.00 3.10
2493 3499 5.725362 AGACAAGAATTTTAGGACGGAGAG 58.275 41.667 0.00 0.00 0.00 3.20
2494 3500 5.740290 AGACAAGAATTTTAGGACGGAGA 57.260 39.130 0.00 0.00 0.00 3.71
2495 3501 7.321153 TCTAAGACAAGAATTTTAGGACGGAG 58.679 38.462 0.00 0.00 0.00 4.63
2496 3502 7.235935 TCTAAGACAAGAATTTTAGGACGGA 57.764 36.000 0.00 0.00 0.00 4.69
2497 3503 8.494016 AATCTAAGACAAGAATTTTAGGACGG 57.506 34.615 0.00 0.00 0.00 4.79
2498 3504 8.321716 CGAATCTAAGACAAGAATTTTAGGACG 58.678 37.037 0.00 0.00 0.00 4.79
2499 3505 9.152595 ACGAATCTAAGACAAGAATTTTAGGAC 57.847 33.333 0.00 0.00 0.00 3.85
2500 3506 9.367444 GACGAATCTAAGACAAGAATTTTAGGA 57.633 33.333 0.00 0.00 0.00 2.94
2501 3507 9.372369 AGACGAATCTAAGACAAGAATTTTAGG 57.628 33.333 0.00 0.00 31.46 2.69
2522 3528 9.881649 AGTATTAGATACATCCGTATTAGACGA 57.118 33.333 0.00 0.00 45.13 4.20
2544 3550 9.261180 CGGATGTATCAAGTCATGTTTTAGTAT 57.739 33.333 0.00 0.00 0.00 2.12
2545 3551 8.255206 ACGGATGTATCAAGTCATGTTTTAGTA 58.745 33.333 0.00 0.00 0.00 1.82
2546 3552 7.103641 ACGGATGTATCAAGTCATGTTTTAGT 58.896 34.615 0.00 0.00 0.00 2.24
2547 3553 7.539712 ACGGATGTATCAAGTCATGTTTTAG 57.460 36.000 0.00 0.00 0.00 1.85
2548 3554 9.607988 AATACGGATGTATCAAGTCATGTTTTA 57.392 29.630 0.00 0.00 40.42 1.52
2549 3555 8.506168 AATACGGATGTATCAAGTCATGTTTT 57.494 30.769 0.00 0.00 40.42 2.43
2550 3556 8.506168 AAATACGGATGTATCAAGTCATGTTT 57.494 30.769 0.00 0.00 40.42 2.83
2551 3557 9.261180 CTAAATACGGATGTATCAAGTCATGTT 57.739 33.333 0.00 0.00 40.42 2.71
2552 3558 8.638873 TCTAAATACGGATGTATCAAGTCATGT 58.361 33.333 0.00 0.00 40.42 3.21
2553 3559 8.916654 GTCTAAATACGGATGTATCAAGTCATG 58.083 37.037 0.00 0.00 40.42 3.07
2554 3560 8.638873 TGTCTAAATACGGATGTATCAAGTCAT 58.361 33.333 0.00 0.00 40.42 3.06
2555 3561 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
2556 3562 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
2557 3563 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
2576 3582 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
2577 3583 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
2578 3584 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
2579 3585 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
2580 3586 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
2581 3587 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
2582 3588 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
2583 3589 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
2584 3590 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
2585 3591 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2586 3592 3.827722 TCCGTCCCAAAATTCTTGTCTT 58.172 40.909 0.00 0.00 0.00 3.01
2587 3593 3.502123 TCCGTCCCAAAATTCTTGTCT 57.498 42.857 0.00 0.00 0.00 3.41
2588 3594 4.217550 TCATTCCGTCCCAAAATTCTTGTC 59.782 41.667 0.00 0.00 0.00 3.18
2589 3595 4.148838 TCATTCCGTCCCAAAATTCTTGT 58.851 39.130 0.00 0.00 0.00 3.16
2590 3596 4.218417 ACTCATTCCGTCCCAAAATTCTTG 59.782 41.667 0.00 0.00 0.00 3.02
2591 3597 4.407365 ACTCATTCCGTCCCAAAATTCTT 58.593 39.130 0.00 0.00 0.00 2.52
2592 3598 4.034285 ACTCATTCCGTCCCAAAATTCT 57.966 40.909 0.00 0.00 0.00 2.40
2593 3599 4.095932 GGTACTCATTCCGTCCCAAAATTC 59.904 45.833 0.00 0.00 0.00 2.17
2594 3600 4.014406 GGTACTCATTCCGTCCCAAAATT 58.986 43.478 0.00 0.00 0.00 1.82
2595 3601 3.009695 TGGTACTCATTCCGTCCCAAAAT 59.990 43.478 0.00 0.00 0.00 1.82
2596 3602 2.372504 TGGTACTCATTCCGTCCCAAAA 59.627 45.455 0.00 0.00 0.00 2.44
2597 3603 1.979308 TGGTACTCATTCCGTCCCAAA 59.021 47.619 0.00 0.00 0.00 3.28
2598 3604 1.646912 TGGTACTCATTCCGTCCCAA 58.353 50.000 0.00 0.00 0.00 4.12
2599 3605 1.874129 ATGGTACTCATTCCGTCCCA 58.126 50.000 0.00 0.00 30.55 4.37
2600 3606 2.696707 TGTATGGTACTCATTCCGTCCC 59.303 50.000 2.73 0.00 37.30 4.46
2601 3607 4.142004 ACTTGTATGGTACTCATTCCGTCC 60.142 45.833 2.73 0.00 37.30 4.79
2602 3608 5.007385 ACTTGTATGGTACTCATTCCGTC 57.993 43.478 2.73 0.00 37.30 4.79
2603 3609 5.451520 GCTACTTGTATGGTACTCATTCCGT 60.452 44.000 2.73 0.00 37.30 4.69
2604 3610 4.982916 GCTACTTGTATGGTACTCATTCCG 59.017 45.833 2.73 0.00 37.30 4.30
2605 3611 4.982916 CGCTACTTGTATGGTACTCATTCC 59.017 45.833 2.73 0.00 37.30 3.01
2606 3612 4.982916 CCGCTACTTGTATGGTACTCATTC 59.017 45.833 2.73 0.00 37.30 2.67
2607 3613 4.404715 ACCGCTACTTGTATGGTACTCATT 59.595 41.667 2.73 0.00 37.30 2.57
2608 3614 3.958798 ACCGCTACTTGTATGGTACTCAT 59.041 43.478 0.00 0.00 39.78 2.90
2609 3615 3.359033 ACCGCTACTTGTATGGTACTCA 58.641 45.455 0.00 0.00 0.00 3.41
2610 3616 4.023365 CCTACCGCTACTTGTATGGTACTC 60.023 50.000 0.00 0.00 34.18 2.59
2611 3617 3.887716 CCTACCGCTACTTGTATGGTACT 59.112 47.826 0.00 0.00 34.18 2.73
2612 3618 3.005155 CCCTACCGCTACTTGTATGGTAC 59.995 52.174 7.53 0.00 34.18 3.34
2613 3619 3.117550 TCCCTACCGCTACTTGTATGGTA 60.118 47.826 9.93 9.93 34.18 3.25
2614 3620 2.037144 CCCTACCGCTACTTGTATGGT 58.963 52.381 8.98 8.98 36.72 3.55
2615 3621 2.313317 TCCCTACCGCTACTTGTATGG 58.687 52.381 0.00 0.00 0.00 2.74
2616 3622 4.038763 TCAATCCCTACCGCTACTTGTATG 59.961 45.833 0.00 0.00 0.00 2.39
2617 3623 4.220724 TCAATCCCTACCGCTACTTGTAT 58.779 43.478 0.00 0.00 0.00 2.29
2618 3624 3.634504 TCAATCCCTACCGCTACTTGTA 58.365 45.455 0.00 0.00 0.00 2.41
2619 3625 2.431057 CTCAATCCCTACCGCTACTTGT 59.569 50.000 0.00 0.00 0.00 3.16
2620 3626 2.431057 ACTCAATCCCTACCGCTACTTG 59.569 50.000 0.00 0.00 0.00 3.16
2621 3627 2.694109 GACTCAATCCCTACCGCTACTT 59.306 50.000 0.00 0.00 0.00 2.24
2622 3628 2.308690 GACTCAATCCCTACCGCTACT 58.691 52.381 0.00 0.00 0.00 2.57
2623 3629 2.029623 TGACTCAATCCCTACCGCTAC 58.970 52.381 0.00 0.00 0.00 3.58
2624 3630 2.307768 CTGACTCAATCCCTACCGCTA 58.692 52.381 0.00 0.00 0.00 4.26
2625 3631 1.115467 CTGACTCAATCCCTACCGCT 58.885 55.000 0.00 0.00 0.00 5.52
2626 3632 3.669354 CTGACTCAATCCCTACCGC 57.331 57.895 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.