>input_sequence_72987
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-------------------------------------------------ATGGCCATCTATGGGAATAATCAGGTTTCTT
TTGCGAGAGCAAGAGAGAACAGCTGGCGACATGGT------ACGGCTCTTAGTGAGATGGGGAAGGATTCATACGCTGAT
TGTGTCTACCACAATGGCAGATTCTACACGGTGACAATGTGTGGGGTGGTCGAGACATGGGATCTCAATAAAGAGCCAGC
ACATGAACCAAACAAACAGGTGATCATTGCTGGCGGGGATGGAAGATACAGGAGGATTCTTACCCGGTTCCTGGTGTCTA
CTCCCTGGGGTTGTCTCCTGCAGATCCGAACTCAACGGCGCAATGATCATCCTAGGAAGGTCATG---------------
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----GTTGAGGTGTTTGAAGTCAATGTCGAGGAGCACAAACTTGTCAGACTGAGTTCTGCCACAGCCTTCCAGGAGCACG
CAGTGTTTGTTGGGTTGAATGAATCCGTATGTTTGCATACCAAAGATTACAAGGAGCTAAGACCCAACCATGTCTATTTT
GCCACACCTTGGTTGACACAGGAAGCAAATTTTGGTCTCAGGGGCTGGAAAGGTGTAGTGATTTATGACCTGGAAAATCA
GACGTTTGAGGAAGTTCTTCCTGCATCTAAATATTCTGCATTTTGTCCCCAGCAAGTTTGGTTCATTCCAAATATCTGA-
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>chr3B_1_TraesCS3B01G348700
TTGACATTTGTCAGGGTTTGATTTAGATCGGGATTGCATAGTTCAGGGTGCAATCGACCGGGATTTCGATTTGGAGGTTC
GTTTCGCCGAACGTCTACGAGTTCAGGTTTAAAATGGACTATTTCCGACAAAAAAATACACATGCATGTGTGTGACAGAG
CGGCCGCTCGAGACGCCCAAATAGCGCGCGCCCACTTTTTAGTTTTTAGGATAAAATTAAGATTTCCTTTCTTGTTATGT
GTTTTTTTTCCTTTTGACCTATGGACTTATCCCAAACCTGAGGATTCCCCCCGCCCCGGCCCCCCACCCGTGCGTCAGCG
GCTGTCGACGGCCGGCCCGCCTCGGCACCGGCCCAAGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCACCCGAATTCGGGGCCCT-GAGATAACCTAGAACCTACTACCGCGAAGGACA----------------------
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------------------------------------------------------ATGATAGAAGCATTGCTGGTTATTAT
TATGGAAATTCTGACAAGCTTATCAGTCCTCCAGATTACATTGGCCGCTGGTTCTACCAGAAGGTGGTGTTGTCATCTGA
TCCATCTCCATCTCACGACGGT------G------GTGACTACATTGCCATGGCCATCTATGGGAATAATCAGGTTTCTT
TTGCGAGAGCAAGAGAGAACAGCTGGCGACATGGT------ACGGCTCTTAGTGAGATGGGGAAGGATTCATACGCTGAT
TGTGTCTACCACAATGGCAGATTCTACACGGTGACAATGTGTGGGGTGGTCGAGACATGGGATCTCAATAAAGAGCCAGC
ACATGAACCAAACAAACAGGTGATCATTGCTGGCGGGGATGGAAGATACAGGAGGATTCTTACCCGGTTCCTGGTGTCTA
CTCCCTGGGGTTGTCTCCTGCAGATCCGAACTCAACGGCGCAATGATCATCCTAGGAAGGTCATG---------------
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----GTTGAGGTGTTTGAAGTCAATGTCGAGGAGCACAAACTTGTCAGACTGAGTTCTGCCACAGCCTTCCAGGAGCACG
CAGTGTTTGTTGGGTTGAATGAATCCGTATGTTTGCATACCAAAGATTACAAGGAGCTAAGACCCAACCATGTCTATTTT
GCCACACCTTGGTTGACACAGGAAGCAAATTTTGGTCTCAGGGGCTGGAAAGGTGTAGTGATTTATGACCTGGAAAATCA
GACGTTTGAGGAAGTTCTTCCTGCATCTAAATATTCTGCATTTTGTCCCCAGCAAGTTTGGTTCATTCCAAATATCTGAA
AGACGGTAC---------ATCTCGTCAGGTTGTGGCTGTCCCGCTAAAACGATTAGTTATGTTTACTCTATTTTATCTTA
TATATTTGTCTCAACAAACATTACAGTGTTGCTAGTGACCGTATTCAGTTCAATATATTTTGTGGCCATGC-AGTGTCTC
CATTTTACTTGGCCATCACTCTCTGAAGTACTCCCTCCGTTCCAAAATAGATGATCCAACTTTGTACTAACCTTAGTACA
AAGTTGGGTCATCTATTTTGGAACGGAGGGAGTATGAGAGTACACGGAAAGAGCAAACATATGCACAACCTTGATGGCGC
TCGTGCCTGTGTGCTTATTAGCTTATTATTACTGTATTACCCATGATTTCGTGTTTCCGTGCTGGCGTTCTGCATAACTA
GTGATACGG-TTTTTTGTAAATATATGGGCACATGAAACATATTATAGTTGTGCAAACATAACCTTATATATTAGTCAAT
ATAATCAACGAAATCTCATATACTCAGGGAAAAGGAAGGTTTACATATACAAATTGGCTTGGTATAACAACATACACAGC
AATATATGTAGTAAATACAACCAATCAATCAGCCAAGACAAGCAACATAAAAAATAAACATGTAACAGGAGACATGACTG
GGCATCATAGATTGTATGGATGGTGCATTAATGAAATCTTAGAAGCACAGATTTGAAGGGGAAAAAAATCTTAGGACTCT
ACCCAAAGGGCCACCATGTTCAGCAACAAAGAAAAACCAGGCGAGCCAGGTGCACCTAGGCACACATTCATGGAGAAGAG
TGATAACAAAGATTTCAATTAGTTGGGAAATCAAATAAATAATATACTAAATACTACTCTCTCCGTCCTAAAATTCTTGT
CTTAGATTCGTCTAATACGGATGTATCTAATACTAAAACATGACTTGATACATCCGTATTTAGACAAATTTAAGACAAGA
ATTTTGGGACGGAATGAGTACCATACAAGTAGCGGTAGGGATTGAGTCAG
>chr3B_806
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-----CACCCGAATTCGGGGCCCCGGAGATAACCTAGAACCTACTACCGCGAAGGACAGCCCCAAATGGCCGAGGATCTC
TCCGAAGTCGCCGCCTTCATCGCCGGAATACAAAATCTTCAAAACCATCCAGTGGATCGTGCTATCCCTGCCGCGAGAAA
ATAAGTCAGGTATTTGTTGAAATTCCGAGTCGAATTCTGTTTGGTTGCTACGCAGTTAATATAATCTGCTCCCGCAGAAC
GTTCCGAGGCTGTAAAAATTGGTTCTTTTTTCTATCATGGCAGATCATTGTGCTAGCAGCTGGTCGGACCTTCCCTGGGA
TCTTCTTGACCGCATCGTACAACACCTTGAGCTCCCCGGAACTCTTGCTATGGCAGCCGTCTGCACTTCATGGCGCTCTG
CCGCGGCGGCTTCCGGCGTCCCTCGTTCTGGCACACCTTGGCTTGTGTCCCGCGAATCTGAGCCTCTCACGAAAACGAAA
GGCAGTGAGTTCCGGAACGTTCTCGACCCCGATAAGATACACATGGTTAGCTATCCTCAAGGACGGCGTAACCTCTCTTG
GTGTGGAGCCTCCCATGGTTGGCTCATTGCCTCTGACGAACTCTCCAATCTTTTGATCTGCAATCCCTTCACGTTGGCCA
TGATCCCTCTCCCGCCTATTACTGATCTGGAATGTGTCGAGGGAGTCTACGACAATGATAGAAGCATTGCTGGTTATTAT
TATGGAAATTCTGACAAGCTTATCAGTCCTCCAGATTACATTGGCCGCTGGTTCTACCAGAAGGTGGTGTTGTCATCTGA
TCCATCTCCATCTCACGGCGGTGGTGA------------CTACATTGCCATGGCCATCTATGGGAATAATCAGGTTTCTT
TTGCGAGAGCAAGAGAGAACAGCTGGCGACATGGT------ACGGCTCTTAGTGAGATGGGGAAGGATTCATACGCTGAT
TGTGTCTACCACAATGGCAGATTCTACACGGTGACAATGTGTGGGGTGGTCGAGACATGGGATCTTAATAAAGAGCCAGC
ACATGAACCAAACAAACAGGTGATCATTGCTGGCGGGGATGGGAGATACAGGAGGATTCTTACCAGGTTCCTGGTGTCTA
CTCCCTGGGGTTGTCTCCTGCAGATCCGAACTCAACGGCGCAATGATCATCCTAGGAAGGTCATGGTTGATGTGTTTGAG
AGGACGTGGGCATAGCCCAGTGGTTGGGGGCGCATGATTGTAAACCTAACGACCAGAGTTCGATCCACGTCGGGGACGAA
TTTCTGGAATTCTCATGAGGGATGCTTCTTCTATATCAATAAAACCGTGGGTGCTAGTGCCCATGGAGTTTCATTTTTGA
GGACGTGGGCATAGCCCAGTAGTTGGGGGCGCATGATTGTAAACCTAACGACCAGAGTTCGATCCACGTCGGGGACGAAT
TTCTGGAATTCTCATGAGGGATGCTTCTTCTATATCAATAAAACCGTGGGTGCTAGTGCCCATGGAGTTTCATTTTTTTT
TATGGTTGATGTGTTTGAAGTCAATGTCAAGGAGCGCAAACTTGTCAGACTGAGTTCTGCCACAGCCTTCCAGGAGTACA
CAGTGTTTGTTGGGTTGAATGAATCTGTATGTTTGCATACCAAAGATTACAAGGAGCTAAGACCCAACCATGTCTATTTT
GCCACACCTTGGTTGACACAGGAAGCAAATTTTGGTCTCAGGGGCTGGAAAGGTGTAGTGATTTACGACCTGGAAAATCA
GACGTTTGAGGAAGTTCTTCCTGCATCTAAACATTCTGCATTTTGTCCCCAGCAAGTTTGGTTCATTCCAAATATTTGAA
AGACGATAC---------ATCTCGTCAGGTTGTGGCTGTCCCGCTAAAACGATTAGTTATTTTT----------------
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>chr7B_855
ACAACGATGGAGA-------------------------------------------------------------------
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----------------------------------------------------------------CATTGCTGGCTATCGT
TATGGGAACTTTGACAAGCTTATCACTCCTCCAGATTACATTGGCCGCTGGTTCTACCAGAAGGTGGCGTTGTCATGCGA
TCCATCTCCATCCCACGGCGGTGGTGAGG------GTGACTACACTGCCATGGCCATCCATGGGAACAATCAGATTTCTT
TTGCGAGAGCAAGAGAGAACCGCTGGCGACATGCCACGACGACGACTCTTGGTGAGATGGGCAAGGATTCATACGCTGAT
TGCGTCCACCACAATGGCAGATTCTACACGGTGACGATGCATGGGGCGGTCGAGGCATGGGATCTTGACAAAGGGCCGAC
GCATCAACCAGGCAAACAGGCGATCATCGCCGACGGGGACGGAAGACAGCGGAGGATTCTCACCCGGTTCCTGGTGTCCA
CCCCCTGGGGTGGTCTCCTGGAGATACGAACCCAGCGGCGCTCCGATCATCCCAGGAGGGTCAAT---------------
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----GTTGAGGCGTTTGAGGTCGATGTCGAGGAGCGCAGGCTCGTCAGGCTGAGCTCTGCCACGGCCTTCCGGGAGCACG
CGGTGTTCGTCGGGTTGAATGAGTCCGTATGCTTGGTTGCCAAAGAGTGTCCGGGGCTAAGGCCCAACCATGTCTACTTT
GCCACGCCTTGGCTGACGCATGAAGAAAATTTTGGTGTCCAGGGCTGGAAAGGGGTGGTGATTTATGACTTGGAAAGCCA
GACGTTCGAGCAAGTTCTTCATGCATCTAAGTATTCTGTATTTTGTCCCCAGCAGGTTTGGTTCATTCCAAATATCTGAA
AGACGACCATACATCTCGATCTCGCCAGGTTGTGGCTGTTCTGCTGAAACTATTAGTTATCTTTGCTCGGTTTTATCTTG
GATATTGGTCTCAGCAAACATTACAGTATTCAGTTC----------------ATGTATTTTGTGGCCATGCCAGTGTCTC
CATTTTACTCAGACATCATTCTCTGAAGTA--------------------------------------------------
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>chr7D_867
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---------------------------------------------------------------GCATTGCTGGTTATCGT
TATGGTAATTTTGACAAGCTTATCACTCCTCCGGATTACATTGGCCGCTGGTTCTACCAGAAGGTGGTGTTGTCATGCGA
TCCATCTCCATCTCATGACAGTGGTGGCGAGGGTAGTGACTATATTGCCATGGCCATCTACGGCAATAATCAGATTTCTT
TTGCGAGAGCAAGAGAGAACCGCTGGCAGCATGCCACGACGAGTCCT----GTGAGATGGGCAAGGATTCATACGCCGAT
TGTGCCCACCACAACGGCAGATTCTACACGGTGACGATGCGTGGGGTGGTCGAGGCATGGGATCTTGACATAGGGCCGCC
GCATCAACCAGGCAAACAGGCGATCATCGCCGACGGGGACGGAAGACACCGGAGGATTCTCACCCGGTTCCTGGTGTCCA
CCCCCTGGGGTGGTCTCCTGGAGATACGAACCCAGCGGCGCTCCGATCACCCCAGGAGGGTCATT---------------
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----GTTGAGGCGTTTGAGGTCGATGTCGAGGAGCGCAGGCTCGTCAGGCTGAGCTCCGCCACGGCCATCCGGGAGCACG
CGGTGTTCGTCGGGTTGAGTGAATCCGTATGCTTGCGTGCCGAAGGGTGTCCGGGGGTAAGACCCAACCATGTCTACTTT
GCCACGCCTTGGCTGACGCATGAAGAAAATTTTGGTCTCCAGGGCTGGAAAGGGGTAGTGATTTACGACTTGGAAAGCCA
GACGTTCGA--------TTCATGCATCTAAGCATGCTGTATTTTGTCCCCAGCAGGTTTGGTTCATTCCAAATATCTGAA
AGACGACCATACATCTCGATCTCGCCAGGTTGTGGCTGTTCTGCTGAAACTATTAGTTATGTTTGCTCGGTTTTATCTTG
GATATTGGTCTCGGCAAACATTACAGTGTTGTCAGTGACAGTATTCAGTTCATC-TATTTTGTGGCCATGCCAGTGTCTC
CATTTTACTCAGACATCATTCTCTGAAGTA--------------------------------------------------
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>chr3B_1682
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--------------------------------------------TAAAACGATTAGTTATGTTTACTCTATTTTATCTTT
TATATTTGTGTCAACAAACATTACAGTGTTGTTAGTGACCGTATTCAGTTCAATATATTTTGTGGCCATGC-AGTGTCTC
CATTTTACCCGGCCATCATTCTCTTTAGTA--------------------------------------------------
----------------------------------TGGGAGTACACGGAAAGAGCAAAAATATACACAACCGTGATGGCGG
TCGTGCTTGTGTGCTTATTAGCTTATTATTACTGTATTACCCATGATTTTGTGTTTCTGTGCTGGCTTTCTACATAACTA
GTGATAGGTTTTTTTTGTAAATGTATGGGCACATGAAACATATTATAGTTGTGCAAACATAACCGTGTATATTAGTCAAT
ATAATCAACGAAATCTCATATACTCAGGGAAAAGGAAGGTTTATATATACAATTTGGCTTGGTATAACAACTTACACATC
AATATATGTAATAAATACACCCAATCAATCAGCCAAGACAAGCAACATAAAAAATAAACATGTAACAGGAGACATGACTG
GTCATTATAGATTGTATAGATGGTGCATTAATGAAATCTTAGAAGTACAGATTTAAAGGGGGAAAAAATCTTAGGACTCT
ACCCAAAGGGCCACCATGTTCAGCAACAAAGAAAAATCAGGCGAGCCCGGTGCACCTAGGCACACATTCATAGAGAAGAG
TGATAACAAAGATTTCAATTAGTTGGGGAATCAAATAAATAATA------------------------------------
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>SNPs
SSS--SS-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS------------------S--------------------------------------------------------
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-----------------------------------S--------------------------------------------
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-----S-------------------------------------------------------------------------S
-------------------------------S------------------------------------------------
---------S--------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------------------S----S-------S--------S
------S------------------------------------------S-------S--------S----S--------
------S-S-------------S-----------------------------------------S-S-------------
-------------------------------------------S--------S------------------S------S-
----------S--------S------------------------------------------------------------
-S---S-----------S---------------------------S--------S------S------------------
------------------------------------S----------S-----------------------S--------
---------------------------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_290
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------------------------------CCCAAACCTGAGGATTCCCC------------------------------
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>reverse_2899
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------------------TGGAACGGAGGGAGTATGAGA-----------------------------------------
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