Multiple sequence alignment - TraesCS3B01G348700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G348700 | chr3B | 100.000 | 1840 | 0 | 0 | 806 | 2645 | 558500083 | 558501922 | 0.000000e+00 | 3398.0 |
1 | TraesCS3B01G348700 | chr3B | 94.425 | 574 | 31 | 1 | 1907 | 2479 | 549422639 | 549423212 | 0.000000e+00 | 881.0 |
2 | TraesCS3B01G348700 | chr3B | 98.982 | 491 | 5 | 0 | 854 | 1344 | 549386818 | 549387308 | 0.000000e+00 | 880.0 |
3 | TraesCS3B01G348700 | chr3B | 100.000 | 361 | 0 | 0 | 1 | 361 | 558499278 | 558499638 | 0.000000e+00 | 667.0 |
4 | TraesCS3B01G348700 | chr3B | 97.059 | 374 | 11 | 0 | 1328 | 1701 | 549387631 | 549388004 | 4.800000e-177 | 630.0 |
5 | TraesCS3B01G348700 | chr3B | 95.683 | 139 | 6 | 0 | 1682 | 1820 | 549422498 | 549422636 | 9.530000e-55 | 224.0 |
6 | TraesCS3B01G348700 | chr3B | 94.815 | 135 | 6 | 1 | 1 | 134 | 18500293 | 18500159 | 2.670000e-50 | 209.0 |
7 | TraesCS3B01G348700 | chr3B | 93.333 | 135 | 8 | 1 | 2487 | 2620 | 50421203 | 50421337 | 5.770000e-47 | 198.0 |
8 | TraesCS3B01G348700 | chr3B | 91.667 | 144 | 8 | 4 | 2473 | 2615 | 178387710 | 178387570 | 2.080000e-46 | 196.0 |
9 | TraesCS3B01G348700 | chr3B | 92.647 | 136 | 7 | 3 | 1 | 134 | 140996395 | 140996261 | 2.690000e-45 | 193.0 |
10 | TraesCS3B01G348700 | chr3B | 100.000 | 87 | 0 | 0 | 1824 | 1910 | 71403747 | 71403661 | 7.580000e-36 | 161.0 |
11 | TraesCS3B01G348700 | chr3B | 96.226 | 53 | 1 | 1 | 806 | 857 | 549386133 | 549386185 | 4.690000e-13 | 86.1 |
12 | TraesCS3B01G348700 | chr7B | 83.216 | 995 | 127 | 15 | 855 | 1826 | 645106314 | 645105337 | 0.000000e+00 | 876.0 |
13 | TraesCS3B01G348700 | chr7D | 83.164 | 986 | 129 | 15 | 867 | 1826 | 579333359 | 579332385 | 0.000000e+00 | 867.0 |
14 | TraesCS3B01G348700 | chr7D | 89.123 | 285 | 25 | 5 | 2038 | 2320 | 123248332 | 123248612 | 1.510000e-92 | 350.0 |
15 | TraesCS3B01G348700 | chr2B | 96.850 | 127 | 3 | 1 | 1 | 126 | 648358485 | 648358611 | 7.420000e-51 | 211.0 |
16 | TraesCS3B01G348700 | chr2B | 82.727 | 110 | 14 | 5 | 2117 | 2222 | 105247611 | 105247719 | 2.800000e-15 | 93.5 |
17 | TraesCS3B01G348700 | chr2B | 82.727 | 110 | 14 | 5 | 2117 | 2222 | 109809206 | 109809314 | 2.800000e-15 | 93.5 |
18 | TraesCS3B01G348700 | chrUn | 95.276 | 127 | 5 | 1 | 1 | 126 | 8595031 | 8594905 | 1.610000e-47 | 200.0 |
19 | TraesCS3B01G348700 | chrUn | 95.276 | 127 | 5 | 1 | 1 | 126 | 359884311 | 359884437 | 1.610000e-47 | 200.0 |
20 | TraesCS3B01G348700 | chrUn | 100.000 | 87 | 0 | 0 | 1824 | 1910 | 394816397 | 394816483 | 7.580000e-36 | 161.0 |
21 | TraesCS3B01G348700 | chr1A | 89.937 | 159 | 11 | 5 | 2465 | 2619 | 485564183 | 485564026 | 1.610000e-47 | 200.0 |
22 | TraesCS3B01G348700 | chr1A | 92.941 | 85 | 5 | 1 | 127 | 211 | 97263453 | 97263370 | 3.580000e-24 | 122.0 |
23 | TraesCS3B01G348700 | chr1A | 91.463 | 82 | 7 | 0 | 130 | 211 | 284329170 | 284329089 | 2.150000e-21 | 113.0 |
24 | TraesCS3B01G348700 | chr5D | 92.701 | 137 | 10 | 0 | 2490 | 2626 | 97580087 | 97579951 | 5.770000e-47 | 198.0 |
25 | TraesCS3B01G348700 | chr5A | 93.333 | 135 | 8 | 1 | 1 | 134 | 314674122 | 314674256 | 5.770000e-47 | 198.0 |
26 | TraesCS3B01G348700 | chr5A | 94.845 | 97 | 4 | 1 | 1824 | 1920 | 255621941 | 255621846 | 1.640000e-32 | 150.0 |
27 | TraesCS3B01G348700 | chr4B | 93.382 | 136 | 5 | 4 | 2482 | 2616 | 16092232 | 16092364 | 5.770000e-47 | 198.0 |
28 | TraesCS3B01G348700 | chr4A | 93.333 | 135 | 8 | 1 | 2482 | 2615 | 618085026 | 618085160 | 5.770000e-47 | 198.0 |
29 | TraesCS3B01G348700 | chr4A | 100.000 | 86 | 0 | 0 | 1825 | 1910 | 607427389 | 607427304 | 2.730000e-35 | 159.0 |
30 | TraesCS3B01G348700 | chr4A | 96.774 | 93 | 2 | 1 | 1825 | 1917 | 742408506 | 742408597 | 1.270000e-33 | 154.0 |
31 | TraesCS3B01G348700 | chr2A | 94.574 | 129 | 6 | 1 | 1 | 128 | 743376845 | 743376973 | 5.770000e-47 | 198.0 |
32 | TraesCS3B01G348700 | chr3A | 92.143 | 140 | 10 | 1 | 2490 | 2628 | 19685968 | 19685829 | 2.080000e-46 | 196.0 |
33 | TraesCS3B01G348700 | chr2D | 94.531 | 128 | 6 | 1 | 1 | 127 | 354382305 | 354382432 | 2.080000e-46 | 196.0 |
34 | TraesCS3B01G348700 | chr6B | 92.593 | 135 | 9 | 1 | 1 | 134 | 630539382 | 630539516 | 2.690000e-45 | 193.0 |
35 | TraesCS3B01G348700 | chr6B | 78.534 | 191 | 30 | 9 | 2038 | 2224 | 36458878 | 36458695 | 5.980000e-22 | 115.0 |
36 | TraesCS3B01G348700 | chr4D | 90.972 | 144 | 11 | 2 | 2475 | 2616 | 99524674 | 99524817 | 2.690000e-45 | 193.0 |
37 | TraesCS3B01G348700 | chr4D | 93.204 | 103 | 4 | 3 | 1809 | 1910 | 71301584 | 71301684 | 5.900000e-32 | 148.0 |
38 | TraesCS3B01G348700 | chr3D | 92.647 | 136 | 7 | 3 | 2487 | 2620 | 283321255 | 283321121 | 2.690000e-45 | 193.0 |
39 | TraesCS3B01G348700 | chr3D | 95.556 | 90 | 4 | 0 | 127 | 216 | 500661910 | 500661821 | 7.630000e-31 | 145.0 |
40 | TraesCS3B01G348700 | chr3D | 86.667 | 90 | 10 | 2 | 2133 | 2222 | 573144708 | 573144621 | 6.030000e-17 | 99.0 |
41 | TraesCS3B01G348700 | chr6A | 98.876 | 89 | 1 | 0 | 1822 | 1910 | 484569500 | 484569588 | 2.730000e-35 | 159.0 |
42 | TraesCS3B01G348700 | chr1B | 97.802 | 91 | 2 | 0 | 1824 | 1914 | 668678529 | 668678439 | 9.800000e-35 | 158.0 |
43 | TraesCS3B01G348700 | chr1B | 75.916 | 191 | 29 | 12 | 2038 | 2222 | 37206768 | 37206947 | 6.070000e-12 | 82.4 |
44 | TraesCS3B01G348700 | chr6D | 92.593 | 108 | 4 | 4 | 1812 | 1917 | 2103737 | 2103632 | 4.560000e-33 | 152.0 |
45 | TraesCS3B01G348700 | chr6D | 95.506 | 89 | 2 | 2 | 127 | 213 | 350938213 | 350938301 | 9.870000e-30 | 141.0 |
46 | TraesCS3B01G348700 | chr1D | 78.453 | 181 | 25 | 12 | 2038 | 2213 | 151003920 | 151003749 | 3.600000e-19 | 106.0 |
47 | TraesCS3B01G348700 | chr7A | 82.727 | 110 | 14 | 5 | 2117 | 2222 | 642529170 | 642529062 | 2.800000e-15 | 93.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G348700 | chr3B | 558499278 | 558501922 | 2644 | False | 2032.500000 | 3398 | 100.000000 | 1 | 2645 | 2 | chr3B.!!$F4 | 2644 |
1 | TraesCS3B01G348700 | chr3B | 549422498 | 549423212 | 714 | False | 552.500000 | 881 | 95.054000 | 1682 | 2479 | 2 | chr3B.!!$F3 | 797 |
2 | TraesCS3B01G348700 | chr3B | 549386133 | 549388004 | 1871 | False | 532.033333 | 880 | 97.422333 | 806 | 1701 | 3 | chr3B.!!$F2 | 895 |
3 | TraesCS3B01G348700 | chr7B | 645105337 | 645106314 | 977 | True | 876.000000 | 876 | 83.216000 | 855 | 1826 | 1 | chr7B.!!$R1 | 971 |
4 | TraesCS3B01G348700 | chr7D | 579332385 | 579333359 | 974 | True | 867.000000 | 867 | 83.164000 | 867 | 1826 | 1 | chr7D.!!$R1 | 959 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
289 | 290 | 0.033109 | CCCAAACCTGAGGATTCCCC | 60.033 | 60.0 | 4.99 | 0.0 | 0.0 | 4.81 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1894 | 2899 | 1.286849 | TCTCATACTCCCTCCGTTCCA | 59.713 | 52.381 | 0.0 | 0.0 | 0.0 | 3.53 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
26 | 27 | 7.214467 | GACATTTGTCAGGGTTTGATTTAGA | 57.786 | 36.000 | 5.84 | 0.00 | 44.18 | 2.10 |
27 | 28 | 7.781324 | ACATTTGTCAGGGTTTGATTTAGAT | 57.219 | 32.000 | 0.00 | 0.00 | 38.29 | 1.98 |
28 | 29 | 7.830739 | ACATTTGTCAGGGTTTGATTTAGATC | 58.169 | 34.615 | 0.00 | 0.00 | 38.29 | 2.75 |
29 | 30 | 6.494893 | TTTGTCAGGGTTTGATTTAGATCG | 57.505 | 37.500 | 0.00 | 0.00 | 38.29 | 3.69 |
30 | 31 | 4.513442 | TGTCAGGGTTTGATTTAGATCGG | 58.487 | 43.478 | 0.00 | 0.00 | 38.29 | 4.18 |
31 | 32 | 3.877508 | GTCAGGGTTTGATTTAGATCGGG | 59.122 | 47.826 | 0.00 | 0.00 | 38.29 | 5.14 |
32 | 33 | 3.778075 | TCAGGGTTTGATTTAGATCGGGA | 59.222 | 43.478 | 0.00 | 0.00 | 34.91 | 5.14 |
33 | 34 | 4.412199 | TCAGGGTTTGATTTAGATCGGGAT | 59.588 | 41.667 | 0.00 | 0.00 | 34.91 | 3.85 |
34 | 35 | 5.104109 | TCAGGGTTTGATTTAGATCGGGATT | 60.104 | 40.000 | 0.00 | 0.00 | 34.91 | 3.01 |
35 | 36 | 5.009010 | CAGGGTTTGATTTAGATCGGGATTG | 59.991 | 44.000 | 0.00 | 0.00 | 34.91 | 2.67 |
36 | 37 | 4.261614 | GGGTTTGATTTAGATCGGGATTGC | 60.262 | 45.833 | 0.00 | 0.00 | 34.91 | 3.56 |
37 | 38 | 4.338118 | GGTTTGATTTAGATCGGGATTGCA | 59.662 | 41.667 | 0.00 | 0.00 | 34.91 | 4.08 |
38 | 39 | 5.010012 | GGTTTGATTTAGATCGGGATTGCAT | 59.990 | 40.000 | 0.00 | 0.00 | 34.91 | 3.96 |
39 | 40 | 6.206634 | GGTTTGATTTAGATCGGGATTGCATA | 59.793 | 38.462 | 0.00 | 0.00 | 34.91 | 3.14 |
40 | 41 | 7.301054 | GTTTGATTTAGATCGGGATTGCATAG | 58.699 | 38.462 | 0.00 | 0.00 | 34.91 | 2.23 |
41 | 42 | 6.114187 | TGATTTAGATCGGGATTGCATAGT | 57.886 | 37.500 | 0.00 | 0.00 | 34.91 | 2.12 |
42 | 43 | 6.533730 | TGATTTAGATCGGGATTGCATAGTT | 58.466 | 36.000 | 0.00 | 0.00 | 34.91 | 2.24 |
43 | 44 | 6.650807 | TGATTTAGATCGGGATTGCATAGTTC | 59.349 | 38.462 | 0.00 | 0.00 | 34.91 | 3.01 |
44 | 45 | 5.545063 | TTAGATCGGGATTGCATAGTTCA | 57.455 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
45 | 46 | 4.000331 | AGATCGGGATTGCATAGTTCAG | 58.000 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
46 | 47 | 2.620251 | TCGGGATTGCATAGTTCAGG | 57.380 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
47 | 48 | 1.140852 | TCGGGATTGCATAGTTCAGGG | 59.859 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
48 | 49 | 1.134098 | CGGGATTGCATAGTTCAGGGT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 4.34 |
49 | 50 | 2.301346 | GGGATTGCATAGTTCAGGGTG | 58.699 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
50 | 51 | 1.678101 | GGATTGCATAGTTCAGGGTGC | 59.322 | 52.381 | 0.00 | 0.00 | 38.05 | 5.01 |
51 | 52 | 2.368439 | GATTGCATAGTTCAGGGTGCA | 58.632 | 47.619 | 0.00 | 0.00 | 44.97 | 4.57 |
53 | 54 | 2.512692 | TGCATAGTTCAGGGTGCAAT | 57.487 | 45.000 | 0.00 | 0.00 | 43.83 | 3.56 |
54 | 55 | 2.368439 | TGCATAGTTCAGGGTGCAATC | 58.632 | 47.619 | 0.00 | 0.00 | 43.83 | 2.67 |
55 | 56 | 1.331756 | GCATAGTTCAGGGTGCAATCG | 59.668 | 52.381 | 0.00 | 0.00 | 37.52 | 3.34 |
56 | 57 | 2.905075 | CATAGTTCAGGGTGCAATCGA | 58.095 | 47.619 | 0.00 | 0.00 | 0.00 | 3.59 |
57 | 58 | 2.380084 | TAGTTCAGGGTGCAATCGAC | 57.620 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
58 | 59 | 0.321653 | AGTTCAGGGTGCAATCGACC | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
59 | 60 | 1.375396 | TTCAGGGTGCAATCGACCG | 60.375 | 57.895 | 0.00 | 0.00 | 33.89 | 4.79 |
60 | 61 | 2.796483 | TTCAGGGTGCAATCGACCGG | 62.796 | 60.000 | 0.00 | 0.00 | 33.89 | 5.28 |
61 | 62 | 4.096003 | AGGGTGCAATCGACCGGG | 62.096 | 66.667 | 6.32 | 0.00 | 33.89 | 5.73 |
62 | 63 | 4.090588 | GGGTGCAATCGACCGGGA | 62.091 | 66.667 | 6.32 | 0.00 | 33.89 | 5.14 |
63 | 64 | 2.189521 | GGTGCAATCGACCGGGAT | 59.810 | 61.111 | 6.32 | 0.00 | 0.00 | 3.85 |
64 | 65 | 1.451387 | GGTGCAATCGACCGGGATT | 60.451 | 57.895 | 6.32 | 2.83 | 37.11 | 3.01 |
65 | 66 | 1.029947 | GGTGCAATCGACCGGGATTT | 61.030 | 55.000 | 6.32 | 0.00 | 34.50 | 2.17 |
66 | 67 | 0.377203 | GTGCAATCGACCGGGATTTC | 59.623 | 55.000 | 6.32 | 0.99 | 34.50 | 2.17 |
67 | 68 | 1.087202 | TGCAATCGACCGGGATTTCG | 61.087 | 55.000 | 6.32 | 6.06 | 34.50 | 3.46 |
72 | 73 | 1.647346 | TCGACCGGGATTTCGATTTG | 58.353 | 50.000 | 10.52 | 0.00 | 39.29 | 2.32 |
73 | 74 | 0.655733 | CGACCGGGATTTCGATTTGG | 59.344 | 55.000 | 6.32 | 0.00 | 37.43 | 3.28 |
74 | 75 | 1.741055 | CGACCGGGATTTCGATTTGGA | 60.741 | 52.381 | 6.32 | 0.00 | 37.43 | 3.53 |
75 | 76 | 1.940613 | GACCGGGATTTCGATTTGGAG | 59.059 | 52.381 | 6.32 | 0.00 | 0.00 | 3.86 |
76 | 77 | 1.308998 | CCGGGATTTCGATTTGGAGG | 58.691 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
77 | 78 | 1.408266 | CCGGGATTTCGATTTGGAGGT | 60.408 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
78 | 79 | 2.365582 | CGGGATTTCGATTTGGAGGTT | 58.634 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
79 | 80 | 2.354821 | CGGGATTTCGATTTGGAGGTTC | 59.645 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
80 | 81 | 2.354821 | GGGATTTCGATTTGGAGGTTCG | 59.645 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
81 | 82 | 3.007635 | GGATTTCGATTTGGAGGTTCGT | 58.992 | 45.455 | 0.00 | 0.00 | 34.60 | 3.85 |
82 | 83 | 3.439129 | GGATTTCGATTTGGAGGTTCGTT | 59.561 | 43.478 | 0.00 | 0.00 | 34.60 | 3.85 |
83 | 84 | 4.082949 | GGATTTCGATTTGGAGGTTCGTTT | 60.083 | 41.667 | 0.00 | 0.00 | 34.60 | 3.60 |
84 | 85 | 4.477302 | TTTCGATTTGGAGGTTCGTTTC | 57.523 | 40.909 | 0.00 | 0.00 | 34.60 | 2.78 |
85 | 86 | 2.063266 | TCGATTTGGAGGTTCGTTTCG | 58.937 | 47.619 | 0.00 | 0.00 | 34.60 | 3.46 |
86 | 87 | 1.463528 | CGATTTGGAGGTTCGTTTCGC | 60.464 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
87 | 88 | 0.879090 | ATTTGGAGGTTCGTTTCGCC | 59.121 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
88 | 89 | 1.500512 | TTTGGAGGTTCGTTTCGCCG | 61.501 | 55.000 | 0.00 | 0.00 | 0.00 | 6.46 |
89 | 90 | 2.048877 | GGAGGTTCGTTTCGCCGA | 60.049 | 61.111 | 0.00 | 0.00 | 34.52 | 5.54 |
90 | 91 | 1.665599 | GGAGGTTCGTTTCGCCGAA | 60.666 | 57.895 | 0.00 | 0.00 | 43.96 | 4.30 |
96 | 97 | 4.135570 | CGTTTCGCCGAACGTCTA | 57.864 | 55.556 | 0.00 | 0.00 | 45.32 | 2.59 |
97 | 98 | 1.692729 | CGTTTCGCCGAACGTCTAC | 59.307 | 57.895 | 0.00 | 0.00 | 45.32 | 2.59 |
98 | 99 | 1.692729 | GTTTCGCCGAACGTCTACG | 59.307 | 57.895 | 0.00 | 0.04 | 44.19 | 3.51 |
99 | 100 | 0.725784 | GTTTCGCCGAACGTCTACGA | 60.726 | 55.000 | 9.86 | 5.31 | 44.19 | 3.43 |
100 | 101 | 0.453282 | TTTCGCCGAACGTCTACGAG | 60.453 | 55.000 | 9.86 | 0.44 | 44.19 | 4.18 |
101 | 102 | 1.568612 | TTCGCCGAACGTCTACGAGT | 61.569 | 55.000 | 9.86 | 0.00 | 44.19 | 4.18 |
102 | 103 | 1.154338 | CGCCGAACGTCTACGAGTT | 60.154 | 57.895 | 9.86 | 0.00 | 43.02 | 3.01 |
103 | 104 | 1.124702 | CGCCGAACGTCTACGAGTTC | 61.125 | 60.000 | 9.86 | 2.88 | 43.02 | 3.01 |
104 | 105 | 0.110056 | GCCGAACGTCTACGAGTTCA | 60.110 | 55.000 | 9.86 | 0.00 | 44.94 | 3.18 |
105 | 106 | 1.879646 | CCGAACGTCTACGAGTTCAG | 58.120 | 55.000 | 9.86 | 1.36 | 44.94 | 3.02 |
106 | 107 | 1.465354 | CCGAACGTCTACGAGTTCAGG | 60.465 | 57.143 | 9.86 | 6.07 | 44.94 | 3.86 |
107 | 108 | 1.196354 | CGAACGTCTACGAGTTCAGGT | 59.804 | 52.381 | 9.86 | 0.00 | 44.94 | 4.00 |
108 | 109 | 2.350197 | CGAACGTCTACGAGTTCAGGTT | 60.350 | 50.000 | 9.86 | 0.00 | 44.94 | 3.50 |
109 | 110 | 3.636381 | GAACGTCTACGAGTTCAGGTTT | 58.364 | 45.455 | 9.86 | 0.00 | 44.32 | 3.27 |
110 | 111 | 4.611355 | CGAACGTCTACGAGTTCAGGTTTA | 60.611 | 45.833 | 9.86 | 0.00 | 44.94 | 2.01 |
111 | 112 | 4.836125 | ACGTCTACGAGTTCAGGTTTAA | 57.164 | 40.909 | 9.86 | 0.00 | 43.02 | 1.52 |
112 | 113 | 5.186996 | ACGTCTACGAGTTCAGGTTTAAA | 57.813 | 39.130 | 9.86 | 0.00 | 43.02 | 1.52 |
113 | 114 | 5.591099 | ACGTCTACGAGTTCAGGTTTAAAA | 58.409 | 37.500 | 9.86 | 0.00 | 43.02 | 1.52 |
114 | 115 | 6.218746 | ACGTCTACGAGTTCAGGTTTAAAAT | 58.781 | 36.000 | 9.86 | 0.00 | 43.02 | 1.82 |
115 | 116 | 6.145048 | ACGTCTACGAGTTCAGGTTTAAAATG | 59.855 | 38.462 | 9.86 | 0.00 | 43.02 | 2.32 |
116 | 117 | 6.400727 | CGTCTACGAGTTCAGGTTTAAAATGG | 60.401 | 42.308 | 0.00 | 0.00 | 43.02 | 3.16 |
117 | 118 | 6.647895 | GTCTACGAGTTCAGGTTTAAAATGGA | 59.352 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
118 | 119 | 5.684550 | ACGAGTTCAGGTTTAAAATGGAC | 57.315 | 39.130 | 5.35 | 5.35 | 0.00 | 4.02 |
119 | 120 | 5.374071 | ACGAGTTCAGGTTTAAAATGGACT | 58.626 | 37.500 | 13.10 | 13.10 | 35.44 | 3.85 |
120 | 121 | 6.527423 | ACGAGTTCAGGTTTAAAATGGACTA | 58.473 | 36.000 | 13.18 | 0.00 | 32.83 | 2.59 |
121 | 122 | 7.166167 | ACGAGTTCAGGTTTAAAATGGACTAT | 58.834 | 34.615 | 13.18 | 5.18 | 32.83 | 2.12 |
122 | 123 | 7.664318 | ACGAGTTCAGGTTTAAAATGGACTATT | 59.336 | 33.333 | 13.18 | 3.98 | 32.83 | 1.73 |
123 | 124 | 8.512138 | CGAGTTCAGGTTTAAAATGGACTATTT | 58.488 | 33.333 | 13.18 | 0.00 | 40.67 | 1.40 |
124 | 125 | 9.841880 | GAGTTCAGGTTTAAAATGGACTATTTC | 57.158 | 33.333 | 13.18 | 1.85 | 38.01 | 2.17 |
125 | 126 | 8.803235 | AGTTCAGGTTTAAAATGGACTATTTCC | 58.197 | 33.333 | 12.02 | 0.00 | 46.13 | 3.13 |
158 | 159 | 2.259266 | ACATGCATGTGTGTGACAGA | 57.741 | 45.000 | 30.92 | 0.00 | 40.03 | 3.41 |
159 | 160 | 2.148768 | ACATGCATGTGTGTGACAGAG | 58.851 | 47.619 | 30.92 | 0.61 | 40.03 | 3.35 |
160 | 161 | 1.135774 | CATGCATGTGTGTGACAGAGC | 60.136 | 52.381 | 18.91 | 0.00 | 38.23 | 4.09 |
161 | 162 | 1.223417 | TGCATGTGTGTGACAGAGCG | 61.223 | 55.000 | 0.00 | 0.00 | 40.63 | 5.03 |
162 | 163 | 1.904852 | GCATGTGTGTGACAGAGCGG | 61.905 | 60.000 | 0.00 | 0.00 | 38.23 | 5.52 |
163 | 164 | 1.669115 | ATGTGTGTGACAGAGCGGC | 60.669 | 57.895 | 0.00 | 0.00 | 38.23 | 6.53 |
164 | 165 | 3.044305 | GTGTGTGACAGAGCGGCC | 61.044 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
165 | 166 | 4.662961 | TGTGTGACAGAGCGGCCG | 62.663 | 66.667 | 24.05 | 24.05 | 0.00 | 6.13 |
180 | 181 | 4.735132 | CCGCTCGAGACGCCCAAA | 62.735 | 66.667 | 18.75 | 0.00 | 0.00 | 3.28 |
181 | 182 | 2.509336 | CGCTCGAGACGCCCAAAT | 60.509 | 61.111 | 18.75 | 0.00 | 0.00 | 2.32 |
182 | 183 | 1.226859 | CGCTCGAGACGCCCAAATA | 60.227 | 57.895 | 18.75 | 0.00 | 0.00 | 1.40 |
183 | 184 | 1.209275 | CGCTCGAGACGCCCAAATAG | 61.209 | 60.000 | 18.75 | 0.00 | 0.00 | 1.73 |
184 | 185 | 1.491505 | GCTCGAGACGCCCAAATAGC | 61.492 | 60.000 | 18.75 | 0.00 | 0.00 | 2.97 |
194 | 195 | 4.886925 | CAAATAGCGCGCGCCCAC | 62.887 | 66.667 | 46.98 | 23.88 | 43.17 | 4.61 |
200 | 201 | 4.392576 | GCGCGCGCCCACTTTTTA | 62.393 | 61.111 | 42.83 | 0.00 | 34.56 | 1.52 |
201 | 202 | 2.202298 | CGCGCGCCCACTTTTTAG | 60.202 | 61.111 | 27.72 | 2.72 | 0.00 | 1.85 |
202 | 203 | 2.951458 | GCGCGCCCACTTTTTAGT | 59.049 | 55.556 | 23.24 | 0.00 | 0.00 | 2.24 |
203 | 204 | 1.284715 | GCGCGCCCACTTTTTAGTT | 59.715 | 52.632 | 23.24 | 0.00 | 0.00 | 2.24 |
204 | 205 | 0.318360 | GCGCGCCCACTTTTTAGTTT | 60.318 | 50.000 | 23.24 | 0.00 | 0.00 | 2.66 |
205 | 206 | 1.866471 | GCGCGCCCACTTTTTAGTTTT | 60.866 | 47.619 | 23.24 | 0.00 | 0.00 | 2.43 |
206 | 207 | 2.465855 | CGCGCCCACTTTTTAGTTTTT | 58.534 | 42.857 | 0.00 | 0.00 | 0.00 | 1.94 |
207 | 208 | 3.630101 | CGCGCCCACTTTTTAGTTTTTA | 58.370 | 40.909 | 0.00 | 0.00 | 0.00 | 1.52 |
208 | 209 | 3.666797 | CGCGCCCACTTTTTAGTTTTTAG | 59.333 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
209 | 210 | 3.985279 | GCGCCCACTTTTTAGTTTTTAGG | 59.015 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
210 | 211 | 4.261698 | GCGCCCACTTTTTAGTTTTTAGGA | 60.262 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
211 | 212 | 5.566032 | GCGCCCACTTTTTAGTTTTTAGGAT | 60.566 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
212 | 213 | 6.349528 | GCGCCCACTTTTTAGTTTTTAGGATA | 60.350 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
213 | 214 | 7.595604 | CGCCCACTTTTTAGTTTTTAGGATAA | 58.404 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
214 | 215 | 8.083462 | CGCCCACTTTTTAGTTTTTAGGATAAA | 58.917 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
215 | 216 | 9.767228 | GCCCACTTTTTAGTTTTTAGGATAAAA | 57.233 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
269 | 270 | 8.950007 | TTTTTCCTTTTGACCTATGGACTTAT | 57.050 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
270 | 271 | 8.575649 | TTTTCCTTTTGACCTATGGACTTATC | 57.424 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
271 | 272 | 6.248569 | TCCTTTTGACCTATGGACTTATCC | 57.751 | 41.667 | 0.00 | 0.00 | 46.48 | 2.59 |
272 | 273 | 5.132144 | TCCTTTTGACCTATGGACTTATCCC | 59.868 | 44.000 | 0.00 | 0.00 | 45.59 | 3.85 |
273 | 274 | 5.104109 | CCTTTTGACCTATGGACTTATCCCA | 60.104 | 44.000 | 0.00 | 0.00 | 45.59 | 4.37 |
274 | 275 | 6.395780 | TTTTGACCTATGGACTTATCCCAA | 57.604 | 37.500 | 0.00 | 0.00 | 45.59 | 4.12 |
275 | 276 | 6.395780 | TTTGACCTATGGACTTATCCCAAA | 57.604 | 37.500 | 0.00 | 0.00 | 45.59 | 3.28 |
276 | 277 | 5.367945 | TGACCTATGGACTTATCCCAAAC | 57.632 | 43.478 | 0.00 | 0.00 | 45.59 | 2.93 |
277 | 278 | 4.165372 | TGACCTATGGACTTATCCCAAACC | 59.835 | 45.833 | 0.00 | 0.00 | 45.59 | 3.27 |
278 | 279 | 4.380791 | ACCTATGGACTTATCCCAAACCT | 58.619 | 43.478 | 0.00 | 0.00 | 45.59 | 3.50 |
279 | 280 | 4.166144 | ACCTATGGACTTATCCCAAACCTG | 59.834 | 45.833 | 0.00 | 0.00 | 45.59 | 4.00 |
280 | 281 | 4.412199 | CCTATGGACTTATCCCAAACCTGA | 59.588 | 45.833 | 0.00 | 0.00 | 45.59 | 3.86 |
281 | 282 | 4.510167 | ATGGACTTATCCCAAACCTGAG | 57.490 | 45.455 | 0.00 | 0.00 | 45.59 | 3.35 |
282 | 283 | 2.576191 | TGGACTTATCCCAAACCTGAGG | 59.424 | 50.000 | 0.00 | 0.00 | 45.59 | 3.86 |
283 | 284 | 2.844348 | GGACTTATCCCAAACCTGAGGA | 59.156 | 50.000 | 4.99 | 0.00 | 39.39 | 3.71 |
284 | 285 | 3.459969 | GGACTTATCCCAAACCTGAGGAT | 59.540 | 47.826 | 4.99 | 0.00 | 42.97 | 3.24 |
285 | 286 | 4.079730 | GGACTTATCCCAAACCTGAGGATT | 60.080 | 45.833 | 4.99 | 0.00 | 40.83 | 3.01 |
286 | 287 | 5.117406 | ACTTATCCCAAACCTGAGGATTC | 57.883 | 43.478 | 4.99 | 0.00 | 40.83 | 2.52 |
287 | 288 | 4.079730 | ACTTATCCCAAACCTGAGGATTCC | 60.080 | 45.833 | 4.99 | 0.00 | 40.83 | 3.01 |
288 | 289 | 0.999712 | TCCCAAACCTGAGGATTCCC | 59.000 | 55.000 | 4.99 | 0.00 | 0.00 | 3.97 |
289 | 290 | 0.033109 | CCCAAACCTGAGGATTCCCC | 60.033 | 60.000 | 4.99 | 0.00 | 0.00 | 4.81 |
290 | 291 | 0.033109 | CCAAACCTGAGGATTCCCCC | 60.033 | 60.000 | 4.99 | 0.00 | 34.66 | 5.40 |
1170 | 1826 | 1.067821 | GTGGTCGAGACATGGGATCTC | 59.932 | 57.143 | 5.55 | 0.00 | 39.44 | 2.75 |
1361 | 2356 | 1.618343 | TGAAGTCAATGTCGAGGAGCA | 59.382 | 47.619 | 0.00 | 0.00 | 0.00 | 4.26 |
1748 | 2752 | 5.455525 | GTCTCAACAAACATTACAGTGTTGC | 59.544 | 40.000 | 0.00 | 0.00 | 46.65 | 4.17 |
1805 | 2810 | 4.460382 | CCATGCAGTGTCTCCATTTTACTT | 59.540 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
1814 | 2819 | 4.016444 | TCTCCATTTTACTTGGCCATCAC | 58.984 | 43.478 | 6.09 | 0.00 | 34.06 | 3.06 |
1826 | 2831 | 2.497675 | TGGCCATCACTCTCTGAAGTAC | 59.502 | 50.000 | 0.00 | 0.00 | 30.60 | 2.73 |
1827 | 2832 | 2.763448 | GGCCATCACTCTCTGAAGTACT | 59.237 | 50.000 | 0.00 | 0.00 | 30.60 | 2.73 |
1828 | 2833 | 3.181480 | GGCCATCACTCTCTGAAGTACTC | 60.181 | 52.174 | 0.00 | 0.00 | 30.60 | 2.59 |
1829 | 2834 | 3.181480 | GCCATCACTCTCTGAAGTACTCC | 60.181 | 52.174 | 0.00 | 0.00 | 30.60 | 3.85 |
1830 | 2835 | 3.383185 | CCATCACTCTCTGAAGTACTCCC | 59.617 | 52.174 | 0.00 | 0.00 | 30.60 | 4.30 |
1831 | 2836 | 4.277476 | CATCACTCTCTGAAGTACTCCCT | 58.723 | 47.826 | 0.00 | 0.00 | 30.60 | 4.20 |
1832 | 2837 | 3.958018 | TCACTCTCTGAAGTACTCCCTC | 58.042 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1833 | 2838 | 3.020984 | CACTCTCTGAAGTACTCCCTCC | 58.979 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
1834 | 2839 | 2.294074 | CTCTCTGAAGTACTCCCTCCG | 58.706 | 57.143 | 0.00 | 0.00 | 0.00 | 4.63 |
1835 | 2840 | 1.634459 | TCTCTGAAGTACTCCCTCCGT | 59.366 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
1836 | 2841 | 2.041350 | TCTCTGAAGTACTCCCTCCGTT | 59.959 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1837 | 2842 | 2.424246 | CTCTGAAGTACTCCCTCCGTTC | 59.576 | 54.545 | 0.00 | 0.00 | 0.00 | 3.95 |
1838 | 2843 | 1.477295 | CTGAAGTACTCCCTCCGTTCC | 59.523 | 57.143 | 0.00 | 0.00 | 0.00 | 3.62 |
1839 | 2844 | 1.203087 | TGAAGTACTCCCTCCGTTCCA | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
1840 | 2845 | 1.897802 | GAAGTACTCCCTCCGTTCCAA | 59.102 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
1841 | 2846 | 2.019807 | AGTACTCCCTCCGTTCCAAA | 57.980 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
1842 | 2847 | 2.332117 | AGTACTCCCTCCGTTCCAAAA | 58.668 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
1843 | 2848 | 2.910977 | AGTACTCCCTCCGTTCCAAAAT | 59.089 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
1844 | 2849 | 4.098894 | AGTACTCCCTCCGTTCCAAAATA | 58.901 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
1845 | 2850 | 3.629142 | ACTCCCTCCGTTCCAAAATAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
1846 | 2851 | 3.178865 | ACTCCCTCCGTTCCAAAATAGA | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
1847 | 2852 | 3.780850 | ACTCCCTCCGTTCCAAAATAGAT | 59.219 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
1848 | 2853 | 4.130118 | CTCCCTCCGTTCCAAAATAGATG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
1849 | 2854 | 3.778075 | TCCCTCCGTTCCAAAATAGATGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
1850 | 2855 | 4.412199 | TCCCTCCGTTCCAAAATAGATGAT | 59.588 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
1851 | 2856 | 4.757149 | CCCTCCGTTCCAAAATAGATGATC | 59.243 | 45.833 | 0.00 | 0.00 | 0.00 | 2.92 |
1852 | 2857 | 4.757149 | CCTCCGTTCCAAAATAGATGATCC | 59.243 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
1853 | 2858 | 5.366482 | TCCGTTCCAAAATAGATGATCCA | 57.634 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
1854 | 2859 | 5.750524 | TCCGTTCCAAAATAGATGATCCAA | 58.249 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
1855 | 2860 | 5.588648 | TCCGTTCCAAAATAGATGATCCAAC | 59.411 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1856 | 2861 | 5.590259 | CCGTTCCAAAATAGATGATCCAACT | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1857 | 2862 | 6.095440 | CCGTTCCAAAATAGATGATCCAACTT | 59.905 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
1858 | 2863 | 7.362920 | CCGTTCCAAAATAGATGATCCAACTTT | 60.363 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
1859 | 2864 | 7.485913 | CGTTCCAAAATAGATGATCCAACTTTG | 59.514 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
1860 | 2865 | 8.306761 | GTTCCAAAATAGATGATCCAACTTTGT | 58.693 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1861 | 2866 | 9.527157 | TTCCAAAATAGATGATCCAACTTTGTA | 57.473 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
1862 | 2867 | 8.956426 | TCCAAAATAGATGATCCAACTTTGTAC | 58.044 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
1863 | 2868 | 8.960591 | CCAAAATAGATGATCCAACTTTGTACT | 58.039 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
1867 | 2872 | 9.614792 | AATAGATGATCCAACTTTGTACTAACC | 57.385 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
1868 | 2873 | 7.259088 | AGATGATCCAACTTTGTACTAACCT | 57.741 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1869 | 2874 | 7.690256 | AGATGATCCAACTTTGTACTAACCTT | 58.310 | 34.615 | 0.00 | 0.00 | 0.00 | 3.50 |
1870 | 2875 | 8.822805 | AGATGATCCAACTTTGTACTAACCTTA | 58.177 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
1871 | 2876 | 9.099454 | GATGATCCAACTTTGTACTAACCTTAG | 57.901 | 37.037 | 0.00 | 0.00 | 36.82 | 2.18 |
1872 | 2877 | 7.970102 | TGATCCAACTTTGTACTAACCTTAGT | 58.030 | 34.615 | 3.29 | 3.29 | 45.39 | 2.24 |
1873 | 2878 | 9.092338 | TGATCCAACTTTGTACTAACCTTAGTA | 57.908 | 33.333 | 1.45 | 1.45 | 43.36 | 1.82 |
1884 | 2889 | 6.505048 | ACTAACCTTAGTACAAAGTTGGGT | 57.495 | 37.500 | 0.00 | 0.00 | 41.92 | 4.51 |
1885 | 2890 | 6.528321 | ACTAACCTTAGTACAAAGTTGGGTC | 58.472 | 40.000 | 0.00 | 0.00 | 41.92 | 4.46 |
1886 | 2891 | 5.376756 | AACCTTAGTACAAAGTTGGGTCA | 57.623 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
1887 | 2892 | 5.578157 | ACCTTAGTACAAAGTTGGGTCAT | 57.422 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
1888 | 2893 | 5.557866 | ACCTTAGTACAAAGTTGGGTCATC | 58.442 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
1889 | 2894 | 5.309806 | ACCTTAGTACAAAGTTGGGTCATCT | 59.690 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1890 | 2895 | 6.499350 | ACCTTAGTACAAAGTTGGGTCATCTA | 59.501 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
1891 | 2896 | 7.182206 | ACCTTAGTACAAAGTTGGGTCATCTAT | 59.818 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
1892 | 2897 | 8.047310 | CCTTAGTACAAAGTTGGGTCATCTATT | 58.953 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
1893 | 2898 | 9.449719 | CTTAGTACAAAGTTGGGTCATCTATTT | 57.550 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1894 | 2899 | 9.802039 | TTAGTACAAAGTTGGGTCATCTATTTT | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
1895 | 2900 | 8.110860 | AGTACAAAGTTGGGTCATCTATTTTG | 57.889 | 34.615 | 0.00 | 0.00 | 0.00 | 2.44 |
1896 | 2901 | 6.345096 | ACAAAGTTGGGTCATCTATTTTGG | 57.655 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
1897 | 2902 | 6.074648 | ACAAAGTTGGGTCATCTATTTTGGA | 58.925 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1898 | 2903 | 6.553100 | ACAAAGTTGGGTCATCTATTTTGGAA | 59.447 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
1899 | 2904 | 6.590234 | AAGTTGGGTCATCTATTTTGGAAC | 57.410 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
1900 | 2905 | 4.700213 | AGTTGGGTCATCTATTTTGGAACG | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
1901 | 2906 | 3.616219 | TGGGTCATCTATTTTGGAACGG | 58.384 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
1902 | 2907 | 3.264706 | TGGGTCATCTATTTTGGAACGGA | 59.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
1903 | 2908 | 3.877508 | GGGTCATCTATTTTGGAACGGAG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
1904 | 2909 | 3.877508 | GGTCATCTATTTTGGAACGGAGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
1905 | 2910 | 3.877508 | GTCATCTATTTTGGAACGGAGGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
1906 | 2911 | 3.778075 | TCATCTATTTTGGAACGGAGGGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1907 | 2912 | 3.906720 | TCTATTTTGGAACGGAGGGAG | 57.093 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
1908 | 2913 | 3.178865 | TCTATTTTGGAACGGAGGGAGT | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
1909 | 2914 | 4.355549 | TCTATTTTGGAACGGAGGGAGTA | 58.644 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
1912 | 2917 | 2.241281 | TTGGAACGGAGGGAGTATGA | 57.759 | 50.000 | 0.00 | 0.00 | 0.00 | 2.15 |
1933 | 2938 | 3.391049 | AGAGTACACGGAAAGAGCAAAC | 58.609 | 45.455 | 0.00 | 0.00 | 0.00 | 2.93 |
1938 | 2943 | 4.685169 | ACACGGAAAGAGCAAACATATG | 57.315 | 40.909 | 0.00 | 0.00 | 0.00 | 1.78 |
1955 | 2960 | 2.126346 | GCACAACCTTGATGGCGC | 60.126 | 61.111 | 0.00 | 0.00 | 40.22 | 6.53 |
2013 | 3018 | 5.576447 | ATTACCCATGATTTCGTGTTTCC | 57.424 | 39.130 | 0.00 | 0.00 | 0.00 | 3.13 |
2022 | 3027 | 4.368808 | CGTGTTTCCGTGCTGGCG | 62.369 | 66.667 | 0.00 | 0.00 | 37.80 | 5.69 |
2027 | 3032 | 2.250939 | TTTCCGTGCTGGCGTTCTG | 61.251 | 57.895 | 0.00 | 0.00 | 37.80 | 3.02 |
2042 | 3047 | 5.562705 | GCGTTCTGCATAACTAGTGATAC | 57.437 | 43.478 | 12.51 | 0.00 | 45.45 | 2.24 |
2044 | 3049 | 4.675565 | CGTTCTGCATAACTAGTGATACGG | 59.324 | 45.833 | 12.51 | 0.00 | 0.00 | 4.02 |
2158 | 3164 | 4.726583 | ACTCAGGGAAAAGGAAGGTTTAC | 58.273 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
2167 | 3173 | 9.027202 | GGGAAAAGGAAGGTTTACATATACAAA | 57.973 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2186 | 3192 | 6.412362 | ACAAATTGGCTTGGTATAACAACA | 57.588 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
2193 | 3199 | 5.645929 | TGGCTTGGTATAACAACATACACAG | 59.354 | 40.000 | 0.00 | 0.00 | 33.77 | 3.66 |
2276 | 3282 | 2.567169 | TGTAACAGGAGACATGACTGGG | 59.433 | 50.000 | 1.41 | 0.00 | 36.57 | 4.45 |
2280 | 3286 | 0.835941 | AGGAGACATGACTGGGCATC | 59.164 | 55.000 | 1.41 | 0.00 | 0.00 | 3.91 |
2292 | 3298 | 5.554070 | TGACTGGGCATCATAGATTGTATG | 58.446 | 41.667 | 0.00 | 0.00 | 0.00 | 2.39 |
2320 | 3326 | 7.483307 | TGGTGCATTAATGAAATCTTAGAAGC | 58.517 | 34.615 | 19.73 | 0.00 | 0.00 | 3.86 |
2336 | 3342 | 2.376518 | AGAAGCACAGATTTGAAGGGGA | 59.623 | 45.455 | 0.00 | 0.00 | 0.00 | 4.81 |
2391 | 3397 | 5.351189 | ACCATGTTCAGCAACAAAGAAAAAC | 59.649 | 36.000 | 0.00 | 0.00 | 45.78 | 2.43 |
2402 | 3408 | 0.467290 | AAGAAAAACCAGGCGAGCCA | 60.467 | 50.000 | 17.18 | 0.00 | 38.92 | 4.75 |
2426 | 3432 | 1.402968 | GCACCTAGGCACACATTCATG | 59.597 | 52.381 | 9.30 | 0.00 | 0.00 | 3.07 |
2502 | 3508 | 9.889128 | ATATACTAAATACTACTCTCTCCGTCC | 57.111 | 37.037 | 0.00 | 0.00 | 0.00 | 4.79 |
2503 | 3509 | 6.251255 | ACTAAATACTACTCTCTCCGTCCT | 57.749 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2504 | 3510 | 7.372260 | ACTAAATACTACTCTCTCCGTCCTA | 57.628 | 40.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2505 | 3511 | 7.800092 | ACTAAATACTACTCTCTCCGTCCTAA | 58.200 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
2506 | 3512 | 8.270744 | ACTAAATACTACTCTCTCCGTCCTAAA | 58.729 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
2507 | 3513 | 7.951347 | AAATACTACTCTCTCCGTCCTAAAA | 57.049 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2508 | 3514 | 8.536340 | AAATACTACTCTCTCCGTCCTAAAAT | 57.464 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2509 | 3515 | 8.536340 | AATACTACTCTCTCCGTCCTAAAATT | 57.464 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
2510 | 3516 | 6.453926 | ACTACTCTCTCCGTCCTAAAATTC | 57.546 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
2511 | 3517 | 6.189133 | ACTACTCTCTCCGTCCTAAAATTCT | 58.811 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
2512 | 3518 | 6.664384 | ACTACTCTCTCCGTCCTAAAATTCTT | 59.336 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
2513 | 3519 | 5.725362 | ACTCTCTCCGTCCTAAAATTCTTG | 58.275 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2514 | 3520 | 5.246429 | ACTCTCTCCGTCCTAAAATTCTTGT | 59.754 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2515 | 3521 | 5.721232 | TCTCTCCGTCCTAAAATTCTTGTC | 58.279 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2516 | 3522 | 5.480772 | TCTCTCCGTCCTAAAATTCTTGTCT | 59.519 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2517 | 3523 | 6.014499 | TCTCTCCGTCCTAAAATTCTTGTCTT | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2518 | 3524 | 7.177921 | TCTCTCCGTCCTAAAATTCTTGTCTTA | 59.822 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
2519 | 3525 | 7.321153 | TCTCCGTCCTAAAATTCTTGTCTTAG | 58.679 | 38.462 | 0.00 | 0.00 | 0.00 | 2.18 |
2520 | 3526 | 7.177921 | TCTCCGTCCTAAAATTCTTGTCTTAGA | 59.822 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
2521 | 3527 | 7.848128 | TCCGTCCTAAAATTCTTGTCTTAGAT | 58.152 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
2522 | 3528 | 8.319146 | TCCGTCCTAAAATTCTTGTCTTAGATT | 58.681 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2523 | 3529 | 8.604890 | CCGTCCTAAAATTCTTGTCTTAGATTC | 58.395 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
2524 | 3530 | 8.321716 | CGTCCTAAAATTCTTGTCTTAGATTCG | 58.678 | 37.037 | 0.00 | 0.00 | 0.00 | 3.34 |
2525 | 3531 | 9.152595 | GTCCTAAAATTCTTGTCTTAGATTCGT | 57.847 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2526 | 3532 | 9.367444 | TCCTAAAATTCTTGTCTTAGATTCGTC | 57.633 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
2527 | 3533 | 9.372369 | CCTAAAATTCTTGTCTTAGATTCGTCT | 57.628 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
2570 | 3576 | 7.539712 | ACTAAAACATGACTTGATACATCCG | 57.460 | 36.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2571 | 3577 | 7.103641 | ACTAAAACATGACTTGATACATCCGT | 58.896 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
2572 | 3578 | 8.255206 | ACTAAAACATGACTTGATACATCCGTA | 58.745 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
2573 | 3579 | 9.261180 | CTAAAACATGACTTGATACATCCGTAT | 57.739 | 33.333 | 0.00 | 0.00 | 41.16 | 3.06 |
2574 | 3580 | 8.506168 | AAAACATGACTTGATACATCCGTATT | 57.494 | 30.769 | 0.00 | 0.00 | 38.48 | 1.89 |
2575 | 3581 | 8.506168 | AAACATGACTTGATACATCCGTATTT | 57.494 | 30.769 | 0.00 | 0.00 | 38.48 | 1.40 |
2576 | 3582 | 9.607988 | AAACATGACTTGATACATCCGTATTTA | 57.392 | 29.630 | 0.00 | 0.00 | 38.48 | 1.40 |
2577 | 3583 | 8.818141 | ACATGACTTGATACATCCGTATTTAG | 57.182 | 34.615 | 0.00 | 0.00 | 38.48 | 1.85 |
2578 | 3584 | 8.638873 | ACATGACTTGATACATCCGTATTTAGA | 58.361 | 33.333 | 0.00 | 0.00 | 38.48 | 2.10 |
2579 | 3585 | 8.916654 | CATGACTTGATACATCCGTATTTAGAC | 58.083 | 37.037 | 0.00 | 0.00 | 38.48 | 2.59 |
2580 | 3586 | 8.002984 | TGACTTGATACATCCGTATTTAGACA | 57.997 | 34.615 | 0.00 | 0.00 | 38.48 | 3.41 |
2581 | 3587 | 8.471609 | TGACTTGATACATCCGTATTTAGACAA | 58.528 | 33.333 | 0.00 | 0.00 | 38.48 | 3.18 |
2582 | 3588 | 9.309516 | GACTTGATACATCCGTATTTAGACAAA | 57.690 | 33.333 | 0.00 | 0.00 | 38.48 | 2.83 |
2583 | 3589 | 9.832445 | ACTTGATACATCCGTATTTAGACAAAT | 57.168 | 29.630 | 0.00 | 0.00 | 38.48 | 2.32 |
2602 | 3608 | 9.546428 | AGACAAATTTAAGACAAGAATTTTGGG | 57.454 | 29.630 | 0.00 | 0.00 | 33.39 | 4.12 |
2603 | 3609 | 9.541143 | GACAAATTTAAGACAAGAATTTTGGGA | 57.459 | 29.630 | 0.00 | 0.00 | 33.39 | 4.37 |
2604 | 3610 | 9.325198 | ACAAATTTAAGACAAGAATTTTGGGAC | 57.675 | 29.630 | 0.00 | 0.00 | 33.39 | 4.46 |
2605 | 3611 | 8.487176 | CAAATTTAAGACAAGAATTTTGGGACG | 58.513 | 33.333 | 0.00 | 0.00 | 32.35 | 4.79 |
2606 | 3612 | 5.699097 | TTAAGACAAGAATTTTGGGACGG | 57.301 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
2607 | 3613 | 3.502123 | AGACAAGAATTTTGGGACGGA | 57.498 | 42.857 | 0.00 | 0.00 | 0.00 | 4.69 |
2608 | 3614 | 3.827722 | AGACAAGAATTTTGGGACGGAA | 58.172 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
2609 | 3615 | 4.407365 | AGACAAGAATTTTGGGACGGAAT | 58.593 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
2610 | 3616 | 4.218417 | AGACAAGAATTTTGGGACGGAATG | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 2.67 |
2611 | 3617 | 4.148838 | ACAAGAATTTTGGGACGGAATGA | 58.851 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2612 | 3618 | 4.218417 | ACAAGAATTTTGGGACGGAATGAG | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
2613 | 3619 | 4.034285 | AGAATTTTGGGACGGAATGAGT | 57.966 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
2614 | 3620 | 5.174037 | AGAATTTTGGGACGGAATGAGTA | 57.826 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
2615 | 3621 | 4.941873 | AGAATTTTGGGACGGAATGAGTAC | 59.058 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
2616 | 3622 | 2.773993 | TTTGGGACGGAATGAGTACC | 57.226 | 50.000 | 0.00 | 0.00 | 42.94 | 3.34 |
2618 | 3624 | 1.874129 | TGGGACGGAATGAGTACCAT | 58.126 | 50.000 | 0.00 | 0.00 | 46.98 | 3.55 |
2619 | 3625 | 3.035055 | TGGGACGGAATGAGTACCATA | 57.965 | 47.619 | 0.00 | 0.00 | 46.98 | 2.74 |
2620 | 3626 | 2.696707 | TGGGACGGAATGAGTACCATAC | 59.303 | 50.000 | 0.00 | 0.00 | 46.98 | 2.39 |
2621 | 3627 | 2.696707 | GGGACGGAATGAGTACCATACA | 59.303 | 50.000 | 0.00 | 0.00 | 42.20 | 2.29 |
2622 | 3628 | 3.133362 | GGGACGGAATGAGTACCATACAA | 59.867 | 47.826 | 0.00 | 0.00 | 42.20 | 2.41 |
2623 | 3629 | 4.369182 | GGACGGAATGAGTACCATACAAG | 58.631 | 47.826 | 0.00 | 0.00 | 34.45 | 3.16 |
2624 | 3630 | 4.142004 | GGACGGAATGAGTACCATACAAGT | 60.142 | 45.833 | 0.00 | 0.00 | 34.45 | 3.16 |
2625 | 3631 | 5.068198 | GGACGGAATGAGTACCATACAAGTA | 59.932 | 44.000 | 0.00 | 0.00 | 34.45 | 2.24 |
2626 | 3632 | 6.145338 | ACGGAATGAGTACCATACAAGTAG | 57.855 | 41.667 | 0.00 | 0.00 | 34.45 | 2.57 |
2627 | 3633 | 4.982916 | CGGAATGAGTACCATACAAGTAGC | 59.017 | 45.833 | 0.00 | 0.00 | 34.45 | 3.58 |
2628 | 3634 | 4.982916 | GGAATGAGTACCATACAAGTAGCG | 59.017 | 45.833 | 0.00 | 0.00 | 34.45 | 4.26 |
2629 | 3635 | 4.585955 | ATGAGTACCATACAAGTAGCGG | 57.414 | 45.455 | 0.00 | 0.00 | 32.72 | 5.52 |
2630 | 3636 | 3.359033 | TGAGTACCATACAAGTAGCGGT | 58.641 | 45.455 | 8.59 | 8.59 | 0.00 | 5.68 |
2631 | 3637 | 4.525996 | TGAGTACCATACAAGTAGCGGTA | 58.474 | 43.478 | 7.06 | 7.06 | 0.00 | 4.02 |
2632 | 3638 | 4.577693 | TGAGTACCATACAAGTAGCGGTAG | 59.422 | 45.833 | 10.11 | 0.00 | 31.59 | 3.18 |
2633 | 3639 | 3.887716 | AGTACCATACAAGTAGCGGTAGG | 59.112 | 47.826 | 10.11 | 0.00 | 31.59 | 3.18 |
2634 | 3640 | 2.037144 | ACCATACAAGTAGCGGTAGGG | 58.963 | 52.381 | 0.00 | 0.00 | 44.66 | 3.53 |
2635 | 3641 | 2.313317 | CCATACAAGTAGCGGTAGGGA | 58.687 | 52.381 | 0.00 | 0.00 | 42.46 | 4.20 |
2636 | 3642 | 2.897969 | CCATACAAGTAGCGGTAGGGAT | 59.102 | 50.000 | 0.00 | 0.00 | 42.46 | 3.85 |
2637 | 3643 | 3.323979 | CCATACAAGTAGCGGTAGGGATT | 59.676 | 47.826 | 0.00 | 0.00 | 42.46 | 3.01 |
2638 | 3644 | 2.981859 | ACAAGTAGCGGTAGGGATTG | 57.018 | 50.000 | 0.00 | 1.21 | 0.00 | 2.67 |
2639 | 3645 | 2.463752 | ACAAGTAGCGGTAGGGATTGA | 58.536 | 47.619 | 12.84 | 0.00 | 0.00 | 2.57 |
2640 | 3646 | 2.431057 | ACAAGTAGCGGTAGGGATTGAG | 59.569 | 50.000 | 12.84 | 0.00 | 0.00 | 3.02 |
2641 | 3647 | 2.431057 | CAAGTAGCGGTAGGGATTGAGT | 59.569 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2642 | 3648 | 2.308690 | AGTAGCGGTAGGGATTGAGTC | 58.691 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
2643 | 3649 | 2.029623 | GTAGCGGTAGGGATTGAGTCA | 58.970 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2644 | 3650 | 1.115467 | AGCGGTAGGGATTGAGTCAG | 58.885 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
2 | 3 | 7.214467 | TCTAAATCAAACCCTGACAAATGTC | 57.786 | 36.000 | 6.60 | 6.60 | 44.97 | 3.06 |
5 | 6 | 6.095440 | CCGATCTAAATCAAACCCTGACAAAT | 59.905 | 38.462 | 0.00 | 0.00 | 36.69 | 2.32 |
6 | 7 | 5.414454 | CCGATCTAAATCAAACCCTGACAAA | 59.586 | 40.000 | 0.00 | 0.00 | 36.69 | 2.83 |
8 | 9 | 4.513442 | CCGATCTAAATCAAACCCTGACA | 58.487 | 43.478 | 0.00 | 0.00 | 36.69 | 3.58 |
10 | 11 | 3.778075 | TCCCGATCTAAATCAAACCCTGA | 59.222 | 43.478 | 0.00 | 0.00 | 38.81 | 3.86 |
11 | 12 | 4.150897 | TCCCGATCTAAATCAAACCCTG | 57.849 | 45.455 | 0.00 | 0.00 | 31.76 | 4.45 |
13 | 14 | 4.261614 | GCAATCCCGATCTAAATCAAACCC | 60.262 | 45.833 | 0.00 | 0.00 | 31.76 | 4.11 |
14 | 15 | 4.338118 | TGCAATCCCGATCTAAATCAAACC | 59.662 | 41.667 | 0.00 | 0.00 | 31.76 | 3.27 |
15 | 16 | 5.499139 | TGCAATCCCGATCTAAATCAAAC | 57.501 | 39.130 | 0.00 | 0.00 | 31.76 | 2.93 |
16 | 17 | 6.998074 | ACTATGCAATCCCGATCTAAATCAAA | 59.002 | 34.615 | 0.00 | 0.00 | 31.76 | 2.69 |
17 | 18 | 6.533730 | ACTATGCAATCCCGATCTAAATCAA | 58.466 | 36.000 | 0.00 | 0.00 | 31.76 | 2.57 |
18 | 19 | 6.114187 | ACTATGCAATCCCGATCTAAATCA | 57.886 | 37.500 | 0.00 | 0.00 | 31.76 | 2.57 |
19 | 20 | 6.650807 | TGAACTATGCAATCCCGATCTAAATC | 59.349 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
20 | 21 | 6.533730 | TGAACTATGCAATCCCGATCTAAAT | 58.466 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
21 | 22 | 5.924356 | TGAACTATGCAATCCCGATCTAAA | 58.076 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
22 | 23 | 5.511373 | CCTGAACTATGCAATCCCGATCTAA | 60.511 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
23 | 24 | 4.021104 | CCTGAACTATGCAATCCCGATCTA | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 1.98 |
24 | 25 | 3.244353 | CCTGAACTATGCAATCCCGATCT | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
25 | 26 | 3.070018 | CCTGAACTATGCAATCCCGATC | 58.930 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
26 | 27 | 2.224621 | CCCTGAACTATGCAATCCCGAT | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
27 | 28 | 1.140852 | CCCTGAACTATGCAATCCCGA | 59.859 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
28 | 29 | 1.134098 | ACCCTGAACTATGCAATCCCG | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
29 | 30 | 2.301346 | CACCCTGAACTATGCAATCCC | 58.699 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
30 | 31 | 1.678101 | GCACCCTGAACTATGCAATCC | 59.322 | 52.381 | 0.00 | 0.00 | 38.00 | 3.01 |
31 | 32 | 2.368439 | TGCACCCTGAACTATGCAATC | 58.632 | 47.619 | 0.00 | 0.00 | 44.72 | 2.67 |
32 | 33 | 2.512692 | TGCACCCTGAACTATGCAAT | 57.487 | 45.000 | 0.00 | 0.00 | 44.72 | 3.56 |
34 | 35 | 2.368439 | GATTGCACCCTGAACTATGCA | 58.632 | 47.619 | 0.00 | 0.00 | 45.94 | 3.96 |
35 | 36 | 1.331756 | CGATTGCACCCTGAACTATGC | 59.668 | 52.381 | 0.00 | 0.00 | 38.59 | 3.14 |
36 | 37 | 2.609459 | GTCGATTGCACCCTGAACTATG | 59.391 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
37 | 38 | 2.420129 | GGTCGATTGCACCCTGAACTAT | 60.420 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
38 | 39 | 1.066430 | GGTCGATTGCACCCTGAACTA | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
39 | 40 | 0.321653 | GGTCGATTGCACCCTGAACT | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
40 | 41 | 1.635663 | CGGTCGATTGCACCCTGAAC | 61.636 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
41 | 42 | 1.375396 | CGGTCGATTGCACCCTGAA | 60.375 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
42 | 43 | 2.264480 | CGGTCGATTGCACCCTGA | 59.736 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
43 | 44 | 2.819595 | CCGGTCGATTGCACCCTG | 60.820 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
44 | 45 | 4.096003 | CCCGGTCGATTGCACCCT | 62.096 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
45 | 46 | 2.886730 | AATCCCGGTCGATTGCACCC | 62.887 | 60.000 | 0.00 | 0.00 | 31.19 | 4.61 |
46 | 47 | 1.029947 | AAATCCCGGTCGATTGCACC | 61.030 | 55.000 | 6.70 | 0.00 | 32.75 | 5.01 |
47 | 48 | 0.377203 | GAAATCCCGGTCGATTGCAC | 59.623 | 55.000 | 6.70 | 0.16 | 32.75 | 4.57 |
48 | 49 | 1.087202 | CGAAATCCCGGTCGATTGCA | 61.087 | 55.000 | 6.34 | 0.00 | 39.64 | 4.08 |
49 | 50 | 0.808453 | TCGAAATCCCGGTCGATTGC | 60.808 | 55.000 | 10.52 | 6.13 | 41.13 | 3.56 |
50 | 51 | 3.355816 | TCGAAATCCCGGTCGATTG | 57.644 | 52.632 | 10.52 | 0.00 | 41.13 | 2.67 |
54 | 55 | 0.655733 | CCAAATCGAAATCCCGGTCG | 59.344 | 55.000 | 5.87 | 5.87 | 38.62 | 4.79 |
55 | 56 | 1.940613 | CTCCAAATCGAAATCCCGGTC | 59.059 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
56 | 57 | 1.408266 | CCTCCAAATCGAAATCCCGGT | 60.408 | 52.381 | 0.00 | 0.00 | 0.00 | 5.28 |
57 | 58 | 1.308998 | CCTCCAAATCGAAATCCCGG | 58.691 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
58 | 59 | 2.038387 | ACCTCCAAATCGAAATCCCG | 57.962 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
59 | 60 | 2.354821 | CGAACCTCCAAATCGAAATCCC | 59.645 | 50.000 | 0.00 | 0.00 | 38.82 | 3.85 |
60 | 61 | 3.007635 | ACGAACCTCCAAATCGAAATCC | 58.992 | 45.455 | 1.03 | 0.00 | 39.73 | 3.01 |
61 | 62 | 4.680171 | AACGAACCTCCAAATCGAAATC | 57.320 | 40.909 | 1.03 | 0.00 | 39.73 | 2.17 |
62 | 63 | 4.378046 | CGAAACGAACCTCCAAATCGAAAT | 60.378 | 41.667 | 1.03 | 0.00 | 39.73 | 2.17 |
63 | 64 | 3.059461 | CGAAACGAACCTCCAAATCGAAA | 60.059 | 43.478 | 1.03 | 0.00 | 39.73 | 3.46 |
64 | 65 | 2.477375 | CGAAACGAACCTCCAAATCGAA | 59.523 | 45.455 | 1.03 | 0.00 | 39.73 | 3.71 |
65 | 66 | 2.063266 | CGAAACGAACCTCCAAATCGA | 58.937 | 47.619 | 1.03 | 0.00 | 39.73 | 3.59 |
66 | 67 | 1.463528 | GCGAAACGAACCTCCAAATCG | 60.464 | 52.381 | 0.00 | 0.00 | 42.05 | 3.34 |
67 | 68 | 1.135774 | GGCGAAACGAACCTCCAAATC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
68 | 69 | 0.879090 | GGCGAAACGAACCTCCAAAT | 59.121 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
69 | 70 | 1.500512 | CGGCGAAACGAACCTCCAAA | 61.501 | 55.000 | 0.00 | 0.00 | 35.47 | 3.28 |
70 | 71 | 1.957186 | CGGCGAAACGAACCTCCAA | 60.957 | 57.895 | 0.00 | 0.00 | 35.47 | 3.53 |
71 | 72 | 2.356553 | CGGCGAAACGAACCTCCA | 60.357 | 61.111 | 0.00 | 0.00 | 35.47 | 3.86 |
72 | 73 | 1.665599 | TTCGGCGAAACGAACCTCC | 60.666 | 57.895 | 21.53 | 0.00 | 46.68 | 4.30 |
73 | 74 | 3.941035 | TTCGGCGAAACGAACCTC | 58.059 | 55.556 | 21.53 | 0.00 | 46.68 | 3.85 |
80 | 81 | 0.725784 | TCGTAGACGTTCGGCGAAAC | 60.726 | 55.000 | 25.48 | 16.95 | 44.77 | 2.78 |
81 | 82 | 0.453282 | CTCGTAGACGTTCGGCGAAA | 60.453 | 55.000 | 25.48 | 5.23 | 44.77 | 3.46 |
82 | 83 | 1.133253 | CTCGTAGACGTTCGGCGAA | 59.867 | 57.895 | 19.83 | 19.83 | 44.77 | 4.70 |
83 | 84 | 1.568612 | AACTCGTAGACGTTCGGCGA | 61.569 | 55.000 | 4.99 | 4.99 | 44.77 | 5.54 |
84 | 85 | 3.685163 | TGAACTCGTAGACGTTCGGCG | 62.685 | 57.143 | 0.00 | 0.00 | 42.89 | 6.46 |
85 | 86 | 0.110056 | TGAACTCGTAGACGTTCGGC | 60.110 | 55.000 | 1.46 | 0.00 | 42.89 | 5.54 |
86 | 87 | 1.465354 | CCTGAACTCGTAGACGTTCGG | 60.465 | 57.143 | 1.46 | 4.87 | 42.89 | 4.30 |
87 | 88 | 1.196354 | ACCTGAACTCGTAGACGTTCG | 59.804 | 52.381 | 1.46 | 0.00 | 42.89 | 3.95 |
88 | 89 | 2.985406 | ACCTGAACTCGTAGACGTTC | 57.015 | 50.000 | 1.46 | 0.62 | 41.52 | 3.95 |
89 | 90 | 3.722728 | AAACCTGAACTCGTAGACGTT | 57.277 | 42.857 | 1.46 | 0.00 | 40.80 | 3.99 |
90 | 91 | 4.836125 | TTAAACCTGAACTCGTAGACGT | 57.164 | 40.909 | 1.46 | 0.00 | 40.80 | 4.34 |
91 | 92 | 6.400727 | CCATTTTAAACCTGAACTCGTAGACG | 60.401 | 42.308 | 0.00 | 0.00 | 41.45 | 4.18 |
92 | 93 | 6.647895 | TCCATTTTAAACCTGAACTCGTAGAC | 59.352 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
93 | 94 | 6.647895 | GTCCATTTTAAACCTGAACTCGTAGA | 59.352 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
94 | 95 | 6.649557 | AGTCCATTTTAAACCTGAACTCGTAG | 59.350 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
95 | 96 | 6.527423 | AGTCCATTTTAAACCTGAACTCGTA | 58.473 | 36.000 | 0.00 | 0.00 | 0.00 | 3.43 |
96 | 97 | 5.374071 | AGTCCATTTTAAACCTGAACTCGT | 58.626 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
97 | 98 | 5.941948 | AGTCCATTTTAAACCTGAACTCG | 57.058 | 39.130 | 0.00 | 0.00 | 0.00 | 4.18 |
98 | 99 | 9.841880 | GAAATAGTCCATTTTAAACCTGAACTC | 57.158 | 33.333 | 0.00 | 0.00 | 36.96 | 3.01 |
99 | 100 | 8.803235 | GGAAATAGTCCATTTTAAACCTGAACT | 58.197 | 33.333 | 0.00 | 0.00 | 46.97 | 3.01 |
100 | 101 | 8.981724 | GGAAATAGTCCATTTTAAACCTGAAC | 57.018 | 34.615 | 0.00 | 0.00 | 46.97 | 3.18 |
139 | 140 | 2.148768 | CTCTGTCACACACATGCATGT | 58.851 | 47.619 | 26.61 | 26.61 | 42.84 | 3.21 |
140 | 141 | 1.135774 | GCTCTGTCACACACATGCATG | 60.136 | 52.381 | 25.09 | 25.09 | 35.56 | 4.06 |
141 | 142 | 1.162698 | GCTCTGTCACACACATGCAT | 58.837 | 50.000 | 0.00 | 0.00 | 35.56 | 3.96 |
142 | 143 | 1.223417 | CGCTCTGTCACACACATGCA | 61.223 | 55.000 | 0.00 | 0.00 | 35.33 | 3.96 |
143 | 144 | 1.494628 | CGCTCTGTCACACACATGC | 59.505 | 57.895 | 0.00 | 0.00 | 33.23 | 4.06 |
144 | 145 | 1.904852 | GCCGCTCTGTCACACACATG | 61.905 | 60.000 | 0.00 | 0.00 | 33.23 | 3.21 |
145 | 146 | 1.669115 | GCCGCTCTGTCACACACAT | 60.669 | 57.895 | 0.00 | 0.00 | 33.23 | 3.21 |
146 | 147 | 2.280119 | GCCGCTCTGTCACACACA | 60.280 | 61.111 | 0.00 | 0.00 | 0.00 | 3.72 |
147 | 148 | 3.044305 | GGCCGCTCTGTCACACAC | 61.044 | 66.667 | 0.00 | 0.00 | 0.00 | 3.82 |
148 | 149 | 4.662961 | CGGCCGCTCTGTCACACA | 62.663 | 66.667 | 14.67 | 0.00 | 0.00 | 3.72 |
163 | 164 | 2.622903 | TATTTGGGCGTCTCGAGCGG | 62.623 | 60.000 | 23.77 | 13.06 | 35.00 | 5.52 |
164 | 165 | 1.209275 | CTATTTGGGCGTCTCGAGCG | 61.209 | 60.000 | 20.16 | 20.16 | 35.00 | 5.03 |
165 | 166 | 1.491505 | GCTATTTGGGCGTCTCGAGC | 61.492 | 60.000 | 7.81 | 1.89 | 0.00 | 5.03 |
166 | 167 | 1.209275 | CGCTATTTGGGCGTCTCGAG | 61.209 | 60.000 | 5.93 | 5.93 | 46.37 | 4.04 |
167 | 168 | 1.226859 | CGCTATTTGGGCGTCTCGA | 60.227 | 57.895 | 0.00 | 0.00 | 46.37 | 4.04 |
168 | 169 | 3.309675 | CGCTATTTGGGCGTCTCG | 58.690 | 61.111 | 0.00 | 0.00 | 46.37 | 4.04 |
183 | 184 | 4.392576 | TAAAAAGTGGGCGCGCGC | 62.393 | 61.111 | 44.40 | 44.40 | 41.06 | 6.86 |
184 | 185 | 2.202298 | CTAAAAAGTGGGCGCGCG | 60.202 | 61.111 | 28.44 | 28.44 | 0.00 | 6.86 |
185 | 186 | 0.318360 | AAACTAAAAAGTGGGCGCGC | 60.318 | 50.000 | 25.94 | 25.94 | 0.00 | 6.86 |
186 | 187 | 2.128367 | AAAACTAAAAAGTGGGCGCG | 57.872 | 45.000 | 0.00 | 0.00 | 0.00 | 6.86 |
187 | 188 | 3.985279 | CCTAAAAACTAAAAAGTGGGCGC | 59.015 | 43.478 | 0.00 | 0.00 | 0.00 | 6.53 |
188 | 189 | 5.441709 | TCCTAAAAACTAAAAAGTGGGCG | 57.558 | 39.130 | 0.00 | 0.00 | 0.00 | 6.13 |
189 | 190 | 9.767228 | TTTTATCCTAAAAACTAAAAAGTGGGC | 57.233 | 29.630 | 0.00 | 0.00 | 0.00 | 5.36 |
244 | 245 | 8.950007 | ATAAGTCCATAGGTCAAAAGGAAAAA | 57.050 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
245 | 246 | 7.614192 | GGATAAGTCCATAGGTCAAAAGGAAAA | 59.386 | 37.037 | 0.00 | 0.00 | 44.42 | 2.29 |
246 | 247 | 7.116736 | GGATAAGTCCATAGGTCAAAAGGAAA | 58.883 | 38.462 | 0.00 | 0.00 | 44.42 | 3.13 |
247 | 248 | 6.659824 | GGATAAGTCCATAGGTCAAAAGGAA | 58.340 | 40.000 | 0.00 | 0.00 | 44.42 | 3.36 |
248 | 249 | 6.248569 | GGATAAGTCCATAGGTCAAAAGGA | 57.751 | 41.667 | 0.00 | 0.00 | 44.42 | 3.36 |
262 | 263 | 2.844348 | TCCTCAGGTTTGGGATAAGTCC | 59.156 | 50.000 | 0.00 | 0.00 | 44.29 | 3.85 |
263 | 264 | 4.779993 | ATCCTCAGGTTTGGGATAAGTC | 57.220 | 45.455 | 0.00 | 0.00 | 38.00 | 3.01 |
264 | 265 | 4.079730 | GGAATCCTCAGGTTTGGGATAAGT | 60.080 | 45.833 | 0.00 | 0.00 | 38.73 | 2.24 |
265 | 266 | 4.464947 | GGAATCCTCAGGTTTGGGATAAG | 58.535 | 47.826 | 0.00 | 0.00 | 38.73 | 1.73 |
266 | 267 | 3.204382 | GGGAATCCTCAGGTTTGGGATAA | 59.796 | 47.826 | 0.00 | 0.00 | 38.73 | 1.75 |
267 | 268 | 2.783510 | GGGAATCCTCAGGTTTGGGATA | 59.216 | 50.000 | 0.00 | 0.00 | 38.73 | 2.59 |
268 | 269 | 1.570979 | GGGAATCCTCAGGTTTGGGAT | 59.429 | 52.381 | 0.00 | 0.00 | 41.09 | 3.85 |
269 | 270 | 0.999712 | GGGAATCCTCAGGTTTGGGA | 59.000 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
270 | 271 | 0.033109 | GGGGAATCCTCAGGTTTGGG | 60.033 | 60.000 | 0.00 | 0.00 | 0.00 | 4.12 |
271 | 272 | 0.033109 | GGGGGAATCCTCAGGTTTGG | 60.033 | 60.000 | 0.00 | 0.00 | 32.39 | 3.28 |
272 | 273 | 3.596362 | GGGGGAATCCTCAGGTTTG | 57.404 | 57.895 | 0.00 | 0.00 | 32.39 | 2.93 |
823 | 824 | 6.294473 | CGGTAGTAGGTTCTAGGTTATCTCA | 58.706 | 44.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1170 | 1826 | 4.418392 | GTTCATGTGCTGGCTCTTTATTG | 58.582 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
1361 | 2356 | 4.872691 | CAGAACTCAGTCTGACAAGTTTGT | 59.127 | 41.667 | 21.71 | 13.72 | 46.76 | 2.83 |
1651 | 2646 | 2.607187 | CCACAACCTGACGAGATGTAC | 58.393 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
1805 | 2810 | 1.649321 | ACTTCAGAGAGTGATGGCCA | 58.351 | 50.000 | 8.56 | 8.56 | 35.13 | 5.36 |
1814 | 2819 | 2.294074 | CGGAGGGAGTACTTCAGAGAG | 58.706 | 57.143 | 2.92 | 0.00 | 0.00 | 3.20 |
1826 | 2831 | 3.906720 | TCTATTTTGGAACGGAGGGAG | 57.093 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
1827 | 2832 | 3.778075 | TCATCTATTTTGGAACGGAGGGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
1828 | 2833 | 4.150897 | TCATCTATTTTGGAACGGAGGG | 57.849 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
1829 | 2834 | 4.757149 | GGATCATCTATTTTGGAACGGAGG | 59.243 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1830 | 2835 | 5.368145 | TGGATCATCTATTTTGGAACGGAG | 58.632 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
1831 | 2836 | 5.366482 | TGGATCATCTATTTTGGAACGGA | 57.634 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
1832 | 2837 | 5.590259 | AGTTGGATCATCTATTTTGGAACGG | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1833 | 2838 | 6.683974 | AGTTGGATCATCTATTTTGGAACG | 57.316 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
1834 | 2839 | 8.306761 | ACAAAGTTGGATCATCTATTTTGGAAC | 58.693 | 33.333 | 11.01 | 0.00 | 0.00 | 3.62 |
1835 | 2840 | 8.421249 | ACAAAGTTGGATCATCTATTTTGGAA | 57.579 | 30.769 | 11.01 | 0.00 | 0.00 | 3.53 |
1836 | 2841 | 8.956426 | GTACAAAGTTGGATCATCTATTTTGGA | 58.044 | 33.333 | 11.01 | 2.87 | 0.00 | 3.53 |
1837 | 2842 | 8.960591 | AGTACAAAGTTGGATCATCTATTTTGG | 58.039 | 33.333 | 11.01 | 0.00 | 0.00 | 3.28 |
1841 | 2846 | 9.614792 | GGTTAGTACAAAGTTGGATCATCTATT | 57.385 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
1842 | 2847 | 8.993424 | AGGTTAGTACAAAGTTGGATCATCTAT | 58.007 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
1843 | 2848 | 8.375493 | AGGTTAGTACAAAGTTGGATCATCTA | 57.625 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
1844 | 2849 | 7.259088 | AGGTTAGTACAAAGTTGGATCATCT | 57.741 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1845 | 2850 | 7.923414 | AAGGTTAGTACAAAGTTGGATCATC | 57.077 | 36.000 | 0.00 | 0.00 | 0.00 | 2.92 |
1846 | 2851 | 8.603304 | ACTAAGGTTAGTACAAAGTTGGATCAT | 58.397 | 33.333 | 0.32 | 0.00 | 41.92 | 2.45 |
1847 | 2852 | 7.970102 | ACTAAGGTTAGTACAAAGTTGGATCA | 58.030 | 34.615 | 0.32 | 0.00 | 41.92 | 2.92 |
1860 | 2865 | 7.289782 | TGACCCAACTTTGTACTAAGGTTAGTA | 59.710 | 37.037 | 19.08 | 5.64 | 43.36 | 1.82 |
1861 | 2866 | 6.100134 | TGACCCAACTTTGTACTAAGGTTAGT | 59.900 | 38.462 | 19.08 | 12.61 | 45.39 | 2.24 |
1862 | 2867 | 6.527423 | TGACCCAACTTTGTACTAAGGTTAG | 58.473 | 40.000 | 19.08 | 9.91 | 36.82 | 2.34 |
1863 | 2868 | 6.497624 | TGACCCAACTTTGTACTAAGGTTA | 57.502 | 37.500 | 19.08 | 4.72 | 0.00 | 2.85 |
1864 | 2869 | 5.376756 | TGACCCAACTTTGTACTAAGGTT | 57.623 | 39.130 | 19.08 | 9.89 | 0.00 | 3.50 |
1865 | 2870 | 5.309806 | AGATGACCCAACTTTGTACTAAGGT | 59.690 | 40.000 | 19.08 | 11.48 | 0.00 | 3.50 |
1866 | 2871 | 5.805728 | AGATGACCCAACTTTGTACTAAGG | 58.194 | 41.667 | 19.08 | 6.74 | 0.00 | 2.69 |
1867 | 2872 | 9.449719 | AAATAGATGACCCAACTTTGTACTAAG | 57.550 | 33.333 | 14.42 | 14.42 | 0.00 | 2.18 |
1868 | 2873 | 9.802039 | AAAATAGATGACCCAACTTTGTACTAA | 57.198 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
1869 | 2874 | 9.226606 | CAAAATAGATGACCCAACTTTGTACTA | 57.773 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
1870 | 2875 | 7.176690 | CCAAAATAGATGACCCAACTTTGTACT | 59.823 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
1871 | 2876 | 7.175990 | TCCAAAATAGATGACCCAACTTTGTAC | 59.824 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1872 | 2877 | 7.235079 | TCCAAAATAGATGACCCAACTTTGTA | 58.765 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
1873 | 2878 | 6.074648 | TCCAAAATAGATGACCCAACTTTGT | 58.925 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1874 | 2879 | 6.588719 | TCCAAAATAGATGACCCAACTTTG | 57.411 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
1875 | 2880 | 6.294508 | CGTTCCAAAATAGATGACCCAACTTT | 60.295 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
1876 | 2881 | 5.183140 | CGTTCCAAAATAGATGACCCAACTT | 59.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1877 | 2882 | 4.700213 | CGTTCCAAAATAGATGACCCAACT | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1878 | 2883 | 4.142469 | CCGTTCCAAAATAGATGACCCAAC | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
1879 | 2884 | 4.013728 | CCGTTCCAAAATAGATGACCCAA | 58.986 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
1880 | 2885 | 3.264706 | TCCGTTCCAAAATAGATGACCCA | 59.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.51 |
1881 | 2886 | 3.877508 | CTCCGTTCCAAAATAGATGACCC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
1882 | 2887 | 3.877508 | CCTCCGTTCCAAAATAGATGACC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
1883 | 2888 | 3.877508 | CCCTCCGTTCCAAAATAGATGAC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
1884 | 2889 | 3.778075 | TCCCTCCGTTCCAAAATAGATGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
1885 | 2890 | 4.130118 | CTCCCTCCGTTCCAAAATAGATG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
1886 | 2891 | 3.780850 | ACTCCCTCCGTTCCAAAATAGAT | 59.219 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
1887 | 2892 | 3.178865 | ACTCCCTCCGTTCCAAAATAGA | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
1888 | 2893 | 3.629142 | ACTCCCTCCGTTCCAAAATAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
1889 | 2894 | 4.717778 | TCATACTCCCTCCGTTCCAAAATA | 59.282 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
1890 | 2895 | 3.521937 | TCATACTCCCTCCGTTCCAAAAT | 59.478 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
1891 | 2896 | 2.907696 | TCATACTCCCTCCGTTCCAAAA | 59.092 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
1892 | 2897 | 2.500098 | CTCATACTCCCTCCGTTCCAAA | 59.500 | 50.000 | 0.00 | 0.00 | 0.00 | 3.28 |
1893 | 2898 | 2.108168 | CTCATACTCCCTCCGTTCCAA | 58.892 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
1894 | 2899 | 1.286849 | TCTCATACTCCCTCCGTTCCA | 59.713 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
1895 | 2900 | 1.957877 | CTCTCATACTCCCTCCGTTCC | 59.042 | 57.143 | 0.00 | 0.00 | 0.00 | 3.62 |
1896 | 2901 | 2.657143 | ACTCTCATACTCCCTCCGTTC | 58.343 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
1897 | 2902 | 2.830651 | ACTCTCATACTCCCTCCGTT | 57.169 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1898 | 2903 | 2.508716 | TGTACTCTCATACTCCCTCCGT | 59.491 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1899 | 2904 | 2.879646 | GTGTACTCTCATACTCCCTCCG | 59.120 | 54.545 | 0.00 | 0.00 | 0.00 | 4.63 |
1900 | 2905 | 2.879646 | CGTGTACTCTCATACTCCCTCC | 59.120 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
1901 | 2906 | 2.879646 | CCGTGTACTCTCATACTCCCTC | 59.120 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
1902 | 2907 | 2.508716 | TCCGTGTACTCTCATACTCCCT | 59.491 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1903 | 2908 | 2.928334 | TCCGTGTACTCTCATACTCCC | 58.072 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
1904 | 2909 | 4.639310 | TCTTTCCGTGTACTCTCATACTCC | 59.361 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
1905 | 2910 | 5.731126 | GCTCTTTCCGTGTACTCTCATACTC | 60.731 | 48.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1906 | 2911 | 4.096682 | GCTCTTTCCGTGTACTCTCATACT | 59.903 | 45.833 | 0.00 | 0.00 | 0.00 | 2.12 |
1907 | 2912 | 4.142447 | TGCTCTTTCCGTGTACTCTCATAC | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
1908 | 2913 | 4.014406 | TGCTCTTTCCGTGTACTCTCATA | 58.986 | 43.478 | 0.00 | 0.00 | 0.00 | 2.15 |
1909 | 2914 | 2.826128 | TGCTCTTTCCGTGTACTCTCAT | 59.174 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
1912 | 2917 | 3.181469 | TGTTTGCTCTTTCCGTGTACTCT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
1933 | 2938 | 2.542205 | CGCCATCAAGGTTGTGCATATG | 60.542 | 50.000 | 0.00 | 0.00 | 40.61 | 1.78 |
1938 | 2943 | 2.126346 | GCGCCATCAAGGTTGTGC | 60.126 | 61.111 | 0.00 | 0.00 | 40.61 | 4.57 |
1955 | 2960 | 1.442769 | AATAAGCACACAGGCACGAG | 58.557 | 50.000 | 0.00 | 0.00 | 35.83 | 4.18 |
2005 | 3010 | 4.368808 | CGCCAGCACGGAAACACG | 62.369 | 66.667 | 0.00 | 0.00 | 36.56 | 4.49 |
2013 | 3018 | 1.634757 | TTATGCAGAACGCCAGCACG | 61.635 | 55.000 | 0.00 | 0.00 | 41.60 | 5.34 |
2022 | 3027 | 5.589192 | ACCGTATCACTAGTTATGCAGAAC | 58.411 | 41.667 | 16.35 | 16.35 | 0.00 | 3.01 |
2057 | 3063 | 9.979897 | ACTATAATATGTTTCATGTGCCCATAT | 57.020 | 29.630 | 0.00 | 0.00 | 31.76 | 1.78 |
2167 | 3173 | 6.661377 | TGTGTATGTTGTTATACCAAGCCAAT | 59.339 | 34.615 | 0.00 | 0.00 | 33.56 | 3.16 |
2205 | 3211 | 6.862209 | TGGCTGATTGATTGGTTGTATTTAC | 58.138 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2214 | 3220 | 3.159213 | TGTCTTGGCTGATTGATTGGT | 57.841 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
2276 | 3282 | 5.163683 | GCACCATCCATACAATCTATGATGC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2280 | 3286 | 6.829229 | AATGCACCATCCATACAATCTATG | 57.171 | 37.500 | 0.00 | 0.00 | 0.00 | 2.23 |
2292 | 3298 | 8.169977 | TCTAAGATTTCATTAATGCACCATCC | 57.830 | 34.615 | 10.76 | 0.00 | 0.00 | 3.51 |
2426 | 3432 | 8.553459 | TGAAATCTTTGTTATCACTCTTCTCC | 57.447 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
2479 | 3485 | 7.372260 | AGGACGGAGAGAGTAGTATTTAGTA | 57.628 | 40.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2480 | 3486 | 6.251255 | AGGACGGAGAGAGTAGTATTTAGT | 57.749 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
2481 | 3487 | 8.674263 | TTTAGGACGGAGAGAGTAGTATTTAG | 57.326 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
2482 | 3488 | 9.638176 | ATTTTAGGACGGAGAGAGTAGTATTTA | 57.362 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2483 | 3489 | 7.951347 | TTTTAGGACGGAGAGAGTAGTATTT | 57.049 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2484 | 3490 | 8.536340 | AATTTTAGGACGGAGAGAGTAGTATT | 57.464 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
2485 | 3491 | 8.000127 | AGAATTTTAGGACGGAGAGAGTAGTAT | 59.000 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
2486 | 3492 | 7.344913 | AGAATTTTAGGACGGAGAGAGTAGTA | 58.655 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
2487 | 3493 | 6.189133 | AGAATTTTAGGACGGAGAGAGTAGT | 58.811 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2488 | 3494 | 6.702716 | AGAATTTTAGGACGGAGAGAGTAG | 57.297 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2489 | 3495 | 6.436532 | ACAAGAATTTTAGGACGGAGAGAGTA | 59.563 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
2490 | 3496 | 5.246429 | ACAAGAATTTTAGGACGGAGAGAGT | 59.754 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2491 | 3497 | 5.725362 | ACAAGAATTTTAGGACGGAGAGAG | 58.275 | 41.667 | 0.00 | 0.00 | 0.00 | 3.20 |
2492 | 3498 | 5.480772 | AGACAAGAATTTTAGGACGGAGAGA | 59.519 | 40.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2493 | 3499 | 5.725362 | AGACAAGAATTTTAGGACGGAGAG | 58.275 | 41.667 | 0.00 | 0.00 | 0.00 | 3.20 |
2494 | 3500 | 5.740290 | AGACAAGAATTTTAGGACGGAGA | 57.260 | 39.130 | 0.00 | 0.00 | 0.00 | 3.71 |
2495 | 3501 | 7.321153 | TCTAAGACAAGAATTTTAGGACGGAG | 58.679 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
2496 | 3502 | 7.235935 | TCTAAGACAAGAATTTTAGGACGGA | 57.764 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2497 | 3503 | 8.494016 | AATCTAAGACAAGAATTTTAGGACGG | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 4.79 |
2498 | 3504 | 8.321716 | CGAATCTAAGACAAGAATTTTAGGACG | 58.678 | 37.037 | 0.00 | 0.00 | 0.00 | 4.79 |
2499 | 3505 | 9.152595 | ACGAATCTAAGACAAGAATTTTAGGAC | 57.847 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2500 | 3506 | 9.367444 | GACGAATCTAAGACAAGAATTTTAGGA | 57.633 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
2501 | 3507 | 9.372369 | AGACGAATCTAAGACAAGAATTTTAGG | 57.628 | 33.333 | 0.00 | 0.00 | 31.46 | 2.69 |
2522 | 3528 | 9.881649 | AGTATTAGATACATCCGTATTAGACGA | 57.118 | 33.333 | 0.00 | 0.00 | 45.13 | 4.20 |
2544 | 3550 | 9.261180 | CGGATGTATCAAGTCATGTTTTAGTAT | 57.739 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
2545 | 3551 | 8.255206 | ACGGATGTATCAAGTCATGTTTTAGTA | 58.745 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2546 | 3552 | 7.103641 | ACGGATGTATCAAGTCATGTTTTAGT | 58.896 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2547 | 3553 | 7.539712 | ACGGATGTATCAAGTCATGTTTTAG | 57.460 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2548 | 3554 | 9.607988 | AATACGGATGTATCAAGTCATGTTTTA | 57.392 | 29.630 | 0.00 | 0.00 | 40.42 | 1.52 |
2549 | 3555 | 8.506168 | AATACGGATGTATCAAGTCATGTTTT | 57.494 | 30.769 | 0.00 | 0.00 | 40.42 | 2.43 |
2550 | 3556 | 8.506168 | AAATACGGATGTATCAAGTCATGTTT | 57.494 | 30.769 | 0.00 | 0.00 | 40.42 | 2.83 |
2551 | 3557 | 9.261180 | CTAAATACGGATGTATCAAGTCATGTT | 57.739 | 33.333 | 0.00 | 0.00 | 40.42 | 2.71 |
2552 | 3558 | 8.638873 | TCTAAATACGGATGTATCAAGTCATGT | 58.361 | 33.333 | 0.00 | 0.00 | 40.42 | 3.21 |
2553 | 3559 | 8.916654 | GTCTAAATACGGATGTATCAAGTCATG | 58.083 | 37.037 | 0.00 | 0.00 | 40.42 | 3.07 |
2554 | 3560 | 8.638873 | TGTCTAAATACGGATGTATCAAGTCAT | 58.361 | 33.333 | 0.00 | 0.00 | 40.42 | 3.06 |
2555 | 3561 | 8.002984 | TGTCTAAATACGGATGTATCAAGTCA | 57.997 | 34.615 | 0.00 | 0.00 | 40.42 | 3.41 |
2556 | 3562 | 8.867112 | TTGTCTAAATACGGATGTATCAAGTC | 57.133 | 34.615 | 0.00 | 0.00 | 40.42 | 3.01 |
2557 | 3563 | 9.832445 | ATTTGTCTAAATACGGATGTATCAAGT | 57.168 | 29.630 | 0.00 | 0.00 | 40.42 | 3.16 |
2576 | 3582 | 9.546428 | CCCAAAATTCTTGTCTTAAATTTGTCT | 57.454 | 29.630 | 0.00 | 0.00 | 33.95 | 3.41 |
2577 | 3583 | 9.541143 | TCCCAAAATTCTTGTCTTAAATTTGTC | 57.459 | 29.630 | 0.00 | 0.00 | 33.95 | 3.18 |
2578 | 3584 | 9.325198 | GTCCCAAAATTCTTGTCTTAAATTTGT | 57.675 | 29.630 | 0.00 | 0.00 | 33.95 | 2.83 |
2579 | 3585 | 8.487176 | CGTCCCAAAATTCTTGTCTTAAATTTG | 58.513 | 33.333 | 0.00 | 0.00 | 33.95 | 2.32 |
2580 | 3586 | 7.655732 | CCGTCCCAAAATTCTTGTCTTAAATTT | 59.344 | 33.333 | 0.00 | 0.00 | 34.86 | 1.82 |
2581 | 3587 | 7.014808 | TCCGTCCCAAAATTCTTGTCTTAAATT | 59.985 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2582 | 3588 | 6.492087 | TCCGTCCCAAAATTCTTGTCTTAAAT | 59.508 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2583 | 3589 | 5.828859 | TCCGTCCCAAAATTCTTGTCTTAAA | 59.171 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2584 | 3590 | 5.378332 | TCCGTCCCAAAATTCTTGTCTTAA | 58.622 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
2585 | 3591 | 4.975631 | TCCGTCCCAAAATTCTTGTCTTA | 58.024 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
2586 | 3592 | 3.827722 | TCCGTCCCAAAATTCTTGTCTT | 58.172 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
2587 | 3593 | 3.502123 | TCCGTCCCAAAATTCTTGTCT | 57.498 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
2588 | 3594 | 4.217550 | TCATTCCGTCCCAAAATTCTTGTC | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2589 | 3595 | 4.148838 | TCATTCCGTCCCAAAATTCTTGT | 58.851 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
2590 | 3596 | 4.218417 | ACTCATTCCGTCCCAAAATTCTTG | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2591 | 3597 | 4.407365 | ACTCATTCCGTCCCAAAATTCTT | 58.593 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2592 | 3598 | 4.034285 | ACTCATTCCGTCCCAAAATTCT | 57.966 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
2593 | 3599 | 4.095932 | GGTACTCATTCCGTCCCAAAATTC | 59.904 | 45.833 | 0.00 | 0.00 | 0.00 | 2.17 |
2594 | 3600 | 4.014406 | GGTACTCATTCCGTCCCAAAATT | 58.986 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
2595 | 3601 | 3.009695 | TGGTACTCATTCCGTCCCAAAAT | 59.990 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
2596 | 3602 | 2.372504 | TGGTACTCATTCCGTCCCAAAA | 59.627 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
2597 | 3603 | 1.979308 | TGGTACTCATTCCGTCCCAAA | 59.021 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
2598 | 3604 | 1.646912 | TGGTACTCATTCCGTCCCAA | 58.353 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2599 | 3605 | 1.874129 | ATGGTACTCATTCCGTCCCA | 58.126 | 50.000 | 0.00 | 0.00 | 30.55 | 4.37 |
2600 | 3606 | 2.696707 | TGTATGGTACTCATTCCGTCCC | 59.303 | 50.000 | 2.73 | 0.00 | 37.30 | 4.46 |
2601 | 3607 | 4.142004 | ACTTGTATGGTACTCATTCCGTCC | 60.142 | 45.833 | 2.73 | 0.00 | 37.30 | 4.79 |
2602 | 3608 | 5.007385 | ACTTGTATGGTACTCATTCCGTC | 57.993 | 43.478 | 2.73 | 0.00 | 37.30 | 4.79 |
2603 | 3609 | 5.451520 | GCTACTTGTATGGTACTCATTCCGT | 60.452 | 44.000 | 2.73 | 0.00 | 37.30 | 4.69 |
2604 | 3610 | 4.982916 | GCTACTTGTATGGTACTCATTCCG | 59.017 | 45.833 | 2.73 | 0.00 | 37.30 | 4.30 |
2605 | 3611 | 4.982916 | CGCTACTTGTATGGTACTCATTCC | 59.017 | 45.833 | 2.73 | 0.00 | 37.30 | 3.01 |
2606 | 3612 | 4.982916 | CCGCTACTTGTATGGTACTCATTC | 59.017 | 45.833 | 2.73 | 0.00 | 37.30 | 2.67 |
2607 | 3613 | 4.404715 | ACCGCTACTTGTATGGTACTCATT | 59.595 | 41.667 | 2.73 | 0.00 | 37.30 | 2.57 |
2608 | 3614 | 3.958798 | ACCGCTACTTGTATGGTACTCAT | 59.041 | 43.478 | 0.00 | 0.00 | 39.78 | 2.90 |
2609 | 3615 | 3.359033 | ACCGCTACTTGTATGGTACTCA | 58.641 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
2610 | 3616 | 4.023365 | CCTACCGCTACTTGTATGGTACTC | 60.023 | 50.000 | 0.00 | 0.00 | 34.18 | 2.59 |
2611 | 3617 | 3.887716 | CCTACCGCTACTTGTATGGTACT | 59.112 | 47.826 | 0.00 | 0.00 | 34.18 | 2.73 |
2612 | 3618 | 3.005155 | CCCTACCGCTACTTGTATGGTAC | 59.995 | 52.174 | 7.53 | 0.00 | 34.18 | 3.34 |
2613 | 3619 | 3.117550 | TCCCTACCGCTACTTGTATGGTA | 60.118 | 47.826 | 9.93 | 9.93 | 34.18 | 3.25 |
2614 | 3620 | 2.037144 | CCCTACCGCTACTTGTATGGT | 58.963 | 52.381 | 8.98 | 8.98 | 36.72 | 3.55 |
2615 | 3621 | 2.313317 | TCCCTACCGCTACTTGTATGG | 58.687 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
2616 | 3622 | 4.038763 | TCAATCCCTACCGCTACTTGTATG | 59.961 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
2617 | 3623 | 4.220724 | TCAATCCCTACCGCTACTTGTAT | 58.779 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2618 | 3624 | 3.634504 | TCAATCCCTACCGCTACTTGTA | 58.365 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
2619 | 3625 | 2.431057 | CTCAATCCCTACCGCTACTTGT | 59.569 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2620 | 3626 | 2.431057 | ACTCAATCCCTACCGCTACTTG | 59.569 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2621 | 3627 | 2.694109 | GACTCAATCCCTACCGCTACTT | 59.306 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2622 | 3628 | 2.308690 | GACTCAATCCCTACCGCTACT | 58.691 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
2623 | 3629 | 2.029623 | TGACTCAATCCCTACCGCTAC | 58.970 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
2624 | 3630 | 2.307768 | CTGACTCAATCCCTACCGCTA | 58.692 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
2625 | 3631 | 1.115467 | CTGACTCAATCCCTACCGCT | 58.885 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2626 | 3632 | 3.669354 | CTGACTCAATCCCTACCGC | 57.331 | 57.895 | 0.00 | 0.00 | 0.00 | 5.68 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.