Multiple sequence alignment - TraesCS3B01G342300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G342300 chr3B 100.000 2935 0 0 1 2935 549704931 549701997 0.000000e+00 5421.0
1 TraesCS3B01G342300 chr3B 92.576 687 28 9 96 767 549427941 549427263 0.000000e+00 965.0
2 TraesCS3B01G342300 chr3B 90.451 576 46 3 1110 1676 549426907 549426332 0.000000e+00 750.0
3 TraesCS3B01G342300 chr3B 92.308 156 8 3 1675 1828 728253133 728252980 4.920000e-53 219.0
4 TraesCS3B01G342300 chr3B 92.969 128 3 1 1829 1950 549426310 549426183 6.460000e-42 182.0
5 TraesCS3B01G342300 chr3B 77.244 312 57 10 245 546 548045560 548045253 1.400000e-38 171.0
6 TraesCS3B01G342300 chr3B 84.545 110 15 2 1945 2052 790587212 790587103 1.110000e-19 108.0
7 TraesCS3B01G342300 chr3D 95.511 1604 39 12 89 1676 422023331 422021745 0.000000e+00 2532.0
8 TraesCS3B01G342300 chr3D 91.717 821 39 5 1829 2643 422021754 422020957 0.000000e+00 1112.0
9 TraesCS3B01G342300 chr3D 91.912 680 39 9 96 767 421704761 421704090 0.000000e+00 937.0
10 TraesCS3B01G342300 chr3D 91.273 550 39 3 1110 1650 421703734 421703185 0.000000e+00 741.0
11 TraesCS3B01G342300 chr3D 94.083 169 9 1 2768 2935 421996877 421996709 3.750000e-64 255.0
12 TraesCS3B01G342300 chr3D 97.810 137 3 0 2634 2770 422010835 422010699 1.360000e-58 237.0
13 TraesCS3B01G342300 chr3D 79.683 315 53 8 245 550 421314918 421314606 1.770000e-52 217.0
14 TraesCS3B01G342300 chr3D 79.181 293 51 7 245 529 421291656 421291366 8.300000e-46 195.0
15 TraesCS3B01G342300 chr3D 88.235 51 4 2 47 97 66523424 66523472 3.160000e-05 60.2
16 TraesCS3B01G342300 chr6B 86.792 689 65 12 101 768 76113988 76113305 0.000000e+00 745.0
17 TraesCS3B01G342300 chr6B 89.060 585 50 5 1100 1675 76111503 76110924 0.000000e+00 713.0
18 TraesCS3B01G342300 chr3A 88.000 550 56 4 1110 1650 529170793 529171341 2.470000e-180 641.0
19 TraesCS3B01G342300 chr3A 89.744 507 42 6 266 767 529149847 529150348 8.870000e-180 640.0
20 TraesCS3B01G342300 chr3A 91.534 189 15 1 89 277 529147444 529147631 2.900000e-65 259.0
21 TraesCS3B01G342300 chr3A 76.825 315 52 12 245 550 529777049 529777351 1.090000e-34 158.0
22 TraesCS3B01G342300 chr5D 82.288 271 42 6 2054 2321 398126561 398126294 2.280000e-56 230.0
23 TraesCS3B01G342300 chr5D 81.852 270 44 4 2056 2323 342717457 342717191 3.810000e-54 222.0
24 TraesCS3B01G342300 chr5D 81.413 269 44 3 2055 2320 34234761 34235026 6.370000e-52 215.0
25 TraesCS3B01G342300 chr7D 82.156 269 42 3 2056 2321 42803494 42803759 2.940000e-55 226.0
26 TraesCS3B01G342300 chr7D 82.353 272 32 13 2056 2320 64064201 64063939 3.810000e-54 222.0
27 TraesCS3B01G342300 chr7D 93.023 43 3 0 44 86 165863524 165863566 2.440000e-06 63.9
28 TraesCS3B01G342300 chr7D 89.796 49 4 1 44 92 604972502 604972455 8.780000e-06 62.1
29 TraesCS3B01G342300 chr7A 82.222 270 39 6 2056 2321 286746969 286746705 1.060000e-54 224.0
30 TraesCS3B01G342300 chr7A 88.235 51 5 1 40 90 561590034 561590083 3.160000e-05 60.2
31 TraesCS3B01G342300 chr7B 81.579 266 42 6 2058 2321 568092175 568091915 2.290000e-51 213.0
32 TraesCS3B01G342300 chr7B 87.129 101 8 4 1955 2052 650541475 650541573 3.090000e-20 110.0
33 TraesCS3B01G342300 chr7B 87.129 101 8 4 1955 2052 650552732 650552830 3.090000e-20 110.0
34 TraesCS3B01G342300 chr4D 81.648 267 38 7 2060 2321 145941174 145940914 8.240000e-51 211.0
35 TraesCS3B01G342300 chr4D 89.032 155 15 1 1676 1828 394380017 394379863 1.070000e-44 191.0
36 TraesCS3B01G342300 chr2A 88.961 154 15 1 1678 1829 88286531 88286378 3.860000e-44 189.0
37 TraesCS3B01G342300 chr5A 86.364 110 11 4 1945 2051 417306543 417306435 1.850000e-22 117.0
38 TraesCS3B01G342300 chr5A 87.037 54 5 2 44 96 126268485 126268433 3.160000e-05 60.2
39 TraesCS3B01G342300 chr5B 82.301 113 18 2 1943 2053 403180684 403180572 2.410000e-16 97.1
40 TraesCS3B01G342300 chr1D 82.456 114 17 3 1945 2056 113829848 113829736 2.410000e-16 97.1
41 TraesCS3B01G342300 chr1D 82.301 113 18 2 1942 2052 355701405 355701293 2.410000e-16 97.1
42 TraesCS3B01G342300 chr6A 80.315 127 22 3 1928 2052 145648380 145648255 3.110000e-15 93.5
43 TraesCS3B01G342300 chr6A 85.246 61 5 4 44 102 51882669 51882727 3.160000e-05 60.2
44 TraesCS3B01G342300 chr6D 85.246 61 5 4 44 102 41237248 41237306 3.160000e-05 60.2
45 TraesCS3B01G342300 chr6D 85.965 57 5 3 44 99 386924913 386924859 1.140000e-04 58.4
46 TraesCS3B01G342300 chr6D 96.970 33 0 1 44 75 196357950 196357982 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G342300 chr3B 549701997 549704931 2934 True 5421.000000 5421 100.000000 1 2935 1 chr3B.!!$R2 2934
1 TraesCS3B01G342300 chr3B 549426183 549427941 1758 True 632.333333 965 91.998667 96 1950 3 chr3B.!!$R5 1854
2 TraesCS3B01G342300 chr3D 422020957 422023331 2374 True 1822.000000 2532 93.614000 89 2643 2 chr3D.!!$R6 2554
3 TraesCS3B01G342300 chr3D 421703185 421704761 1576 True 839.000000 937 91.592500 96 1650 2 chr3D.!!$R5 1554
4 TraesCS3B01G342300 chr6B 76110924 76113988 3064 True 729.000000 745 87.926000 101 1675 2 chr6B.!!$R1 1574
5 TraesCS3B01G342300 chr3A 529170793 529171341 548 False 641.000000 641 88.000000 1110 1650 1 chr3A.!!$F1 540
6 TraesCS3B01G342300 chr3A 529147444 529150348 2904 False 449.500000 640 90.639000 89 767 2 chr3A.!!$F3 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 231 0.898789 CCGGTGTCAGTAGAGGGTGT 60.899 60.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 5928 0.804989 GCAGTTGATGTACTGGCACC 59.195 55.0 5.97 0.0 44.5 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.612066 TTTTGCATAGATATACATCAGTCACAA 57.388 29.630 0.00 0.00 33.21 3.33
27 28 9.612066 TTTGCATAGATATACATCAGTCACAAA 57.388 29.630 0.00 0.00 33.21 2.83
28 29 8.593492 TGCATAGATATACATCAGTCACAAAC 57.407 34.615 0.00 0.00 33.21 2.93
29 30 8.424133 TGCATAGATATACATCAGTCACAAACT 58.576 33.333 0.00 0.00 39.44 2.66
30 31 9.265901 GCATAGATATACATCAGTCACAAACTT 57.734 33.333 0.00 0.00 35.45 2.66
34 35 9.950496 AGATATACATCAGTCACAAACTTTCTT 57.050 29.630 0.00 0.00 35.45 2.52
35 36 9.979270 GATATACATCAGTCACAAACTTTCTTG 57.021 33.333 0.00 0.00 35.45 3.02
36 37 4.925068 ACATCAGTCACAAACTTTCTTGC 58.075 39.130 0.00 0.00 35.45 4.01
37 38 4.398988 ACATCAGTCACAAACTTTCTTGCA 59.601 37.500 0.00 0.00 35.45 4.08
38 39 5.068198 ACATCAGTCACAAACTTTCTTGCAT 59.932 36.000 0.00 0.00 35.45 3.96
39 40 5.173774 TCAGTCACAAACTTTCTTGCATC 57.826 39.130 0.00 0.00 35.45 3.91
40 41 4.639755 TCAGTCACAAACTTTCTTGCATCA 59.360 37.500 0.00 0.00 35.45 3.07
41 42 4.974275 CAGTCACAAACTTTCTTGCATCAG 59.026 41.667 0.00 0.00 35.45 2.90
42 43 3.732721 GTCACAAACTTTCTTGCATCAGC 59.267 43.478 0.00 0.00 42.57 4.26
43 44 6.893262 AGTCACAAACTTTCTTGCATCAGCA 61.893 40.000 0.00 0.00 42.21 4.41
57 58 5.154215 GCATCAGCAAGAGTGATCTAAAC 57.846 43.478 0.00 0.00 41.58 2.01
58 59 4.260132 GCATCAGCAAGAGTGATCTAAACG 60.260 45.833 0.00 0.00 41.58 3.60
59 60 3.254060 TCAGCAAGAGTGATCTAAACGC 58.746 45.455 0.00 0.00 0.00 4.84
60 61 3.056536 TCAGCAAGAGTGATCTAAACGCT 60.057 43.478 0.00 0.00 0.00 5.07
61 62 3.305629 CAGCAAGAGTGATCTAAACGCTC 59.694 47.826 0.00 0.00 42.81 5.03
71 72 9.685828 GAGTGATCTAAACGCTCTTATATTTCT 57.314 33.333 0.00 0.00 40.40 2.52
113 114 2.665649 AATCTGTAATCACGCGGACA 57.334 45.000 12.47 5.48 0.00 4.02
121 122 1.359848 ATCACGCGGACAAGAACATC 58.640 50.000 12.47 0.00 0.00 3.06
222 231 0.898789 CCGGTGTCAGTAGAGGGTGT 60.899 60.000 0.00 0.00 0.00 4.16
243 252 2.555325 TGTCTTCCTTGTACGTCGTGAT 59.445 45.455 8.47 0.00 0.00 3.06
426 2661 2.890371 GCCGGAGTACATCACGGT 59.110 61.111 5.05 0.00 41.28 4.83
530 2765 4.155733 CCATGCCGTCGTAGCCCA 62.156 66.667 0.00 0.00 0.00 5.36
900 3202 9.197694 CTAATATCGTTCAGATTCTAACAAGGG 57.802 37.037 0.00 0.00 40.66 3.95
903 3205 2.678336 GTTCAGATTCTAACAAGGGCCG 59.322 50.000 0.00 0.00 0.00 6.13
911 3213 2.633967 TCTAACAAGGGCCGTAAGTTCA 59.366 45.455 16.55 5.65 0.00 3.18
962 3266 1.134367 TGAAATCTAGTCCACGAGGCG 59.866 52.381 0.00 0.00 33.74 5.52
1088 3561 0.861837 CCGTCTTATCATCAAGCGCC 59.138 55.000 2.29 0.00 0.00 6.53
1090 3563 2.138320 CGTCTTATCATCAAGCGCCAT 58.862 47.619 2.29 0.00 0.00 4.40
1091 3564 2.096565 CGTCTTATCATCAAGCGCCATG 60.097 50.000 2.29 3.63 0.00 3.66
1093 3566 3.059325 GTCTTATCATCAAGCGCCATGAC 60.059 47.826 14.88 1.19 31.80 3.06
1094 3567 2.618442 TATCATCAAGCGCCATGACA 57.382 45.000 14.88 2.29 31.80 3.58
1452 5259 4.457496 CCATCGTCGCCACCAGCT 62.457 66.667 0.00 0.00 40.39 4.24
1453 5260 2.887568 CATCGTCGCCACCAGCTC 60.888 66.667 0.00 0.00 40.39 4.09
1676 5483 8.635328 CAGATGATGTTCCCAATTATTTGATCA 58.365 33.333 0.00 0.00 34.60 2.92
1677 5484 9.204337 AGATGATGTTCCCAATTATTTGATCAA 57.796 29.630 3.38 3.38 34.60 2.57
1679 5486 7.555087 TGATGTTCCCAATTATTTGATCAACC 58.445 34.615 7.89 0.00 34.60 3.77
1682 5489 7.385267 TGTTCCCAATTATTTGATCAACCTTG 58.615 34.615 7.89 9.11 34.60 3.61
1683 5490 5.976458 TCCCAATTATTTGATCAACCTTGC 58.024 37.500 7.89 0.00 34.60 4.01
1685 5492 6.894654 TCCCAATTATTTGATCAACCTTGCTA 59.105 34.615 7.89 0.00 34.60 3.49
1687 5494 8.859090 CCCAATTATTTGATCAACCTTGCTATA 58.141 33.333 7.89 0.00 34.60 1.31
1688 5495 9.683069 CCAATTATTTGATCAACCTTGCTATAC 57.317 33.333 7.89 0.00 34.60 1.47
1693 5500 7.477144 TTTGATCAACCTTGCTATACATACG 57.523 36.000 7.89 0.00 0.00 3.06
1695 5502 6.213677 TGATCAACCTTGCTATACATACGAC 58.786 40.000 0.00 0.00 0.00 4.34
1697 5504 5.588240 TCAACCTTGCTATACATACGACAG 58.412 41.667 0.00 0.00 0.00 3.51
1698 5505 5.358725 TCAACCTTGCTATACATACGACAGA 59.641 40.000 0.00 0.00 0.00 3.41
1699 5506 5.847111 ACCTTGCTATACATACGACAGAA 57.153 39.130 0.00 0.00 0.00 3.02
1700 5507 6.406692 ACCTTGCTATACATACGACAGAAT 57.593 37.500 0.00 0.00 0.00 2.40
1701 5508 6.216569 ACCTTGCTATACATACGACAGAATG 58.783 40.000 0.00 0.00 46.00 2.67
1702 5509 5.119279 CCTTGCTATACATACGACAGAATGC 59.881 44.000 0.00 0.00 42.53 3.56
1703 5510 4.556233 TGCTATACATACGACAGAATGCC 58.444 43.478 0.00 0.00 42.53 4.40
1704 5511 4.280929 TGCTATACATACGACAGAATGCCT 59.719 41.667 0.00 0.00 42.53 4.75
1714 5521 1.901591 CAGAATGCCTGTCCAACACT 58.098 50.000 0.00 0.00 38.10 3.55
1715 5522 3.057969 CAGAATGCCTGTCCAACACTA 57.942 47.619 0.00 0.00 38.10 2.74
1716 5523 2.744202 CAGAATGCCTGTCCAACACTAC 59.256 50.000 0.00 0.00 38.10 2.73
1717 5524 1.732259 GAATGCCTGTCCAACACTACG 59.268 52.381 0.00 0.00 0.00 3.51
1718 5525 0.973632 ATGCCTGTCCAACACTACGA 59.026 50.000 0.00 0.00 0.00 3.43
1719 5526 0.973632 TGCCTGTCCAACACTACGAT 59.026 50.000 0.00 0.00 0.00 3.73
1720 5527 1.346395 TGCCTGTCCAACACTACGATT 59.654 47.619 0.00 0.00 0.00 3.34
1721 5528 2.563620 TGCCTGTCCAACACTACGATTA 59.436 45.455 0.00 0.00 0.00 1.75
1722 5529 3.187700 GCCTGTCCAACACTACGATTAG 58.812 50.000 0.00 0.00 0.00 1.73
1723 5530 3.119245 GCCTGTCCAACACTACGATTAGA 60.119 47.826 0.00 0.00 0.00 2.10
1724 5531 4.673441 CCTGTCCAACACTACGATTAGAG 58.327 47.826 0.00 0.00 0.00 2.43
1725 5532 4.398358 CCTGTCCAACACTACGATTAGAGA 59.602 45.833 0.00 0.00 0.00 3.10
1726 5533 5.306532 TGTCCAACACTACGATTAGAGAC 57.693 43.478 0.00 0.00 0.00 3.36
1727 5534 4.763279 TGTCCAACACTACGATTAGAGACA 59.237 41.667 0.00 0.00 0.00 3.41
1728 5535 5.242171 TGTCCAACACTACGATTAGAGACAA 59.758 40.000 0.00 0.00 0.00 3.18
1729 5536 6.071560 TGTCCAACACTACGATTAGAGACAAT 60.072 38.462 0.00 0.00 0.00 2.71
1730 5537 6.812160 GTCCAACACTACGATTAGAGACAATT 59.188 38.462 0.00 0.00 0.00 2.32
1731 5538 6.811665 TCCAACACTACGATTAGAGACAATTG 59.188 38.462 3.24 3.24 0.00 2.32
1732 5539 6.590292 CCAACACTACGATTAGAGACAATTGT 59.410 38.462 11.78 11.78 36.63 2.71
1733 5540 7.758076 CCAACACTACGATTAGAGACAATTGTA 59.242 37.037 11.95 0.00 34.87 2.41
1735 5542 8.277490 ACACTACGATTAGAGACAATTGTAGA 57.723 34.615 21.70 0.00 46.75 2.59
1736 5543 8.904834 ACACTACGATTAGAGACAATTGTAGAT 58.095 33.333 21.70 0.13 46.75 1.98
1741 5548 9.953697 ACGATTAGAGACAATTGTAGATAACTC 57.046 33.333 11.95 12.29 31.93 3.01
1742 5549 9.952188 CGATTAGAGACAATTGTAGATAACTCA 57.048 33.333 11.95 0.00 0.00 3.41
1751 5558 9.396022 ACAATTGTAGATAACTCAGTTTATGGG 57.604 33.333 9.97 0.00 34.51 4.00
1752 5559 9.613428 CAATTGTAGATAACTCAGTTTATGGGA 57.387 33.333 0.00 0.00 31.77 4.37
1753 5560 9.614792 AATTGTAGATAACTCAGTTTATGGGAC 57.385 33.333 0.00 0.00 31.77 4.46
1771 5578 6.692849 TGGGACATAGCATTTAGAGATGAT 57.307 37.500 0.00 0.00 0.00 2.45
1772 5579 7.797121 TGGGACATAGCATTTAGAGATGATA 57.203 36.000 0.00 0.00 33.02 2.15
1773 5580 8.384693 TGGGACATAGCATTTAGAGATGATAT 57.615 34.615 0.00 0.00 38.71 1.63
1779 5586 9.251792 CATAGCATTTAGAGATGATATGCTCTC 57.748 37.037 10.76 3.60 46.46 3.20
1780 5587 7.484993 AGCATTTAGAGATGATATGCTCTCT 57.515 36.000 14.82 14.82 46.46 3.10
1781 5588 7.549839 AGCATTTAGAGATGATATGCTCTCTC 58.450 38.462 14.14 5.13 46.46 3.20
1782 5589 6.473131 GCATTTAGAGATGATATGCTCTCTCG 59.527 42.308 14.14 6.33 43.70 4.04
1783 5590 7.537715 CATTTAGAGATGATATGCTCTCTCGT 58.462 38.462 14.14 3.46 43.70 4.18
1784 5591 7.517614 TTTAGAGATGATATGCTCTCTCGTT 57.482 36.000 14.14 0.00 43.70 3.85
1785 5592 5.375417 AGAGATGATATGCTCTCTCGTTG 57.625 43.478 7.53 0.00 43.70 4.10
1786 5593 4.826733 AGAGATGATATGCTCTCTCGTTGT 59.173 41.667 7.53 0.00 43.70 3.32
1787 5594 6.000840 AGAGATGATATGCTCTCTCGTTGTA 58.999 40.000 7.53 0.00 43.70 2.41
1788 5595 6.658816 AGAGATGATATGCTCTCTCGTTGTAT 59.341 38.462 7.53 0.00 43.70 2.29
1789 5596 7.176515 AGAGATGATATGCTCTCTCGTTGTATT 59.823 37.037 7.53 0.00 43.70 1.89
1790 5597 8.341892 AGATGATATGCTCTCTCGTTGTATTA 57.658 34.615 0.00 0.00 0.00 0.98
1791 5598 8.458052 AGATGATATGCTCTCTCGTTGTATTAG 58.542 37.037 0.00 0.00 0.00 1.73
1792 5599 7.511959 TGATATGCTCTCTCGTTGTATTAGT 57.488 36.000 0.00 0.00 0.00 2.24
1793 5600 7.585867 TGATATGCTCTCTCGTTGTATTAGTC 58.414 38.462 0.00 0.00 0.00 2.59
1794 5601 4.274421 TGCTCTCTCGTTGTATTAGTCG 57.726 45.455 0.00 0.00 0.00 4.18
1795 5602 3.064958 TGCTCTCTCGTTGTATTAGTCGG 59.935 47.826 0.00 0.00 0.00 4.79
1796 5603 3.311871 GCTCTCTCGTTGTATTAGTCGGA 59.688 47.826 0.00 0.00 0.00 4.55
1797 5604 4.785975 GCTCTCTCGTTGTATTAGTCGGAC 60.786 50.000 0.00 0.00 0.00 4.79
1798 5605 3.308053 TCTCTCGTTGTATTAGTCGGACG 59.692 47.826 1.89 0.00 0.00 4.79
1799 5606 3.261580 TCTCGTTGTATTAGTCGGACGA 58.738 45.455 1.89 0.00 37.83 4.20
1800 5607 3.605406 CTCGTTGTATTAGTCGGACGAG 58.395 50.000 8.95 8.95 46.61 4.18
1801 5608 3.261580 TCGTTGTATTAGTCGGACGAGA 58.738 45.455 1.89 0.00 34.98 4.04
1802 5609 3.684305 TCGTTGTATTAGTCGGACGAGAA 59.316 43.478 1.89 0.00 34.98 2.87
1803 5610 4.154015 TCGTTGTATTAGTCGGACGAGAAA 59.846 41.667 1.89 0.00 34.98 2.52
1804 5611 4.853196 CGTTGTATTAGTCGGACGAGAAAA 59.147 41.667 1.89 0.00 32.73 2.29
1805 5612 5.219914 CGTTGTATTAGTCGGACGAGAAAAC 60.220 44.000 1.89 4.25 32.73 2.43
1806 5613 4.737054 TGTATTAGTCGGACGAGAAAACC 58.263 43.478 1.89 0.00 0.00 3.27
1807 5614 3.947910 ATTAGTCGGACGAGAAAACCA 57.052 42.857 1.89 0.00 0.00 3.67
1808 5615 3.947910 TTAGTCGGACGAGAAAACCAT 57.052 42.857 1.89 0.00 0.00 3.55
1809 5616 2.365408 AGTCGGACGAGAAAACCATC 57.635 50.000 1.89 0.00 0.00 3.51
1810 5617 1.616865 AGTCGGACGAGAAAACCATCA 59.383 47.619 1.89 0.00 0.00 3.07
1811 5618 2.233922 AGTCGGACGAGAAAACCATCAT 59.766 45.455 1.89 0.00 0.00 2.45
1812 5619 3.446161 AGTCGGACGAGAAAACCATCATA 59.554 43.478 1.89 0.00 0.00 2.15
1813 5620 3.550678 GTCGGACGAGAAAACCATCATAC 59.449 47.826 0.00 0.00 0.00 2.39
1814 5621 2.534349 CGGACGAGAAAACCATCATACG 59.466 50.000 0.00 0.00 0.00 3.06
1815 5622 2.284417 GGACGAGAAAACCATCATACGC 59.716 50.000 0.00 0.00 0.00 4.42
1816 5623 2.927477 GACGAGAAAACCATCATACGCA 59.073 45.455 0.00 0.00 0.00 5.24
1817 5624 2.930040 ACGAGAAAACCATCATACGCAG 59.070 45.455 0.00 0.00 0.00 5.18
1818 5625 3.186909 CGAGAAAACCATCATACGCAGA 58.813 45.455 0.00 0.00 0.00 4.26
1819 5626 3.243877 CGAGAAAACCATCATACGCAGAG 59.756 47.826 0.00 0.00 0.00 3.35
1820 5627 2.939103 AGAAAACCATCATACGCAGAGC 59.061 45.455 0.00 0.00 0.00 4.09
1821 5628 2.401583 AAACCATCATACGCAGAGCA 57.598 45.000 0.00 0.00 0.00 4.26
1822 5629 1.945387 AACCATCATACGCAGAGCAG 58.055 50.000 0.00 0.00 0.00 4.24
1823 5630 0.826715 ACCATCATACGCAGAGCAGT 59.173 50.000 0.00 0.00 0.00 4.40
1824 5631 1.208052 ACCATCATACGCAGAGCAGTT 59.792 47.619 0.00 0.00 0.00 3.16
1825 5632 2.283298 CCATCATACGCAGAGCAGTTT 58.717 47.619 0.00 0.00 0.00 2.66
1826 5633 2.286294 CCATCATACGCAGAGCAGTTTC 59.714 50.000 0.00 0.00 0.00 2.78
1827 5634 1.629013 TCATACGCAGAGCAGTTTCG 58.371 50.000 0.00 0.00 0.00 3.46
1997 5810 8.024865 TCTTTTCAATCATGCAGTACAATGAAG 58.975 33.333 9.19 6.43 0.00 3.02
2002 5815 4.650734 TCATGCAGTACAATGAAGACCAA 58.349 39.130 0.00 0.00 0.00 3.67
2042 5855 7.690256 ACATCCAAATCTGTAGAAAACCTAGT 58.310 34.615 0.00 0.00 0.00 2.57
2043 5856 7.607991 ACATCCAAATCTGTAGAAAACCTAGTG 59.392 37.037 0.00 0.00 0.00 2.74
2100 5913 5.006386 AGTCAGGAAGTCATTTTGCTAAGG 58.994 41.667 0.00 0.00 0.00 2.69
2116 5929 2.846532 GGCCCCATAGGACCATGG 59.153 66.667 11.19 11.19 44.44 3.66
2123 5936 0.548031 CATAGGACCATGGTGCCAGT 59.452 55.000 30.59 16.45 37.15 4.00
2135 5948 1.611673 GGTGCCAGTACATCAACTGCT 60.612 52.381 0.00 0.00 44.56 4.24
2177 5990 9.708222 CGTATATCAAAAGAATCCAACTTGAAG 57.292 33.333 0.00 0.00 30.37 3.02
2184 5997 8.352201 CAAAAGAATCCAACTTGAAGATACACA 58.648 33.333 0.00 0.00 0.00 3.72
2187 6000 8.641498 AGAATCCAACTTGAAGATACACAAAT 57.359 30.769 0.00 0.00 0.00 2.32
2191 6004 8.094798 TCCAACTTGAAGATACACAAATGTAC 57.905 34.615 0.00 0.00 44.11 2.90
2204 6017 6.220930 ACACAAATGTACATGAACTACGACT 58.779 36.000 9.63 0.00 37.26 4.18
2214 6027 2.871022 TGAACTACGACTAGATCCGAGC 59.129 50.000 0.00 0.00 0.00 5.03
2223 6036 2.103263 ACTAGATCCGAGCAAATCCACC 59.897 50.000 0.00 0.00 0.00 4.61
2257 6070 1.837439 TCAAAGACACACCTCCACACT 59.163 47.619 0.00 0.00 0.00 3.55
2292 6105 0.250124 AGACGCACCATCAAAACGGA 60.250 50.000 0.00 0.00 0.00 4.69
2303 6116 1.084370 CAAAACGGAGGCTAGGCGAG 61.084 60.000 11.10 8.74 0.00 5.03
2370 6183 9.311916 TCAATTCATTCAAAAATCGAAGTGTTT 57.688 25.926 0.00 0.00 34.02 2.83
2414 6227 2.903135 AGGGAAGGTCATCATAGCTAGC 59.097 50.000 6.62 6.62 0.00 3.42
2416 6229 3.306641 GGGAAGGTCATCATAGCTAGCTG 60.307 52.174 27.68 12.64 0.00 4.24
2449 6262 2.897969 AGGAACTACATCGTCCACAAGT 59.102 45.455 0.00 0.00 36.02 3.16
2450 6263 4.084287 AGGAACTACATCGTCCACAAGTA 58.916 43.478 0.00 0.00 36.02 2.24
2451 6264 4.082354 AGGAACTACATCGTCCACAAGTAC 60.082 45.833 0.00 0.00 36.02 2.73
2452 6265 3.482722 ACTACATCGTCCACAAGTACG 57.517 47.619 0.00 0.00 40.40 3.67
2453 6266 2.163010 ACTACATCGTCCACAAGTACGG 59.837 50.000 0.00 0.00 39.52 4.02
2454 6267 1.250328 ACATCGTCCACAAGTACGGA 58.750 50.000 0.00 0.00 39.52 4.69
2455 6268 1.614903 ACATCGTCCACAAGTACGGAA 59.385 47.619 0.00 0.00 39.52 4.30
2456 6269 1.990563 CATCGTCCACAAGTACGGAAC 59.009 52.381 0.00 0.00 39.52 3.62
2457 6270 0.314935 TCGTCCACAAGTACGGAACC 59.685 55.000 0.00 0.00 39.52 3.62
2458 6271 0.032403 CGTCCACAAGTACGGAACCA 59.968 55.000 0.00 0.00 35.51 3.67
2459 6272 1.792006 GTCCACAAGTACGGAACCAG 58.208 55.000 0.00 0.00 31.67 4.00
2460 6273 1.342174 GTCCACAAGTACGGAACCAGA 59.658 52.381 0.00 0.00 31.67 3.86
2461 6274 1.342174 TCCACAAGTACGGAACCAGAC 59.658 52.381 0.00 0.00 0.00 3.51
2462 6275 1.069513 CCACAAGTACGGAACCAGACA 59.930 52.381 0.00 0.00 0.00 3.41
2463 6276 2.484065 CCACAAGTACGGAACCAGACAA 60.484 50.000 0.00 0.00 0.00 3.18
2464 6277 2.542595 CACAAGTACGGAACCAGACAAC 59.457 50.000 0.00 0.00 0.00 3.32
2465 6278 2.140717 CAAGTACGGAACCAGACAACC 58.859 52.381 0.00 0.00 0.00 3.77
2466 6279 0.683412 AGTACGGAACCAGACAACCC 59.317 55.000 0.00 0.00 0.00 4.11
2467 6280 0.393820 GTACGGAACCAGACAACCCA 59.606 55.000 0.00 0.00 0.00 4.51
2468 6281 0.682852 TACGGAACCAGACAACCCAG 59.317 55.000 0.00 0.00 0.00 4.45
2469 6282 1.052124 ACGGAACCAGACAACCCAGA 61.052 55.000 0.00 0.00 0.00 3.86
2470 6283 0.320771 CGGAACCAGACAACCCAGAG 60.321 60.000 0.00 0.00 0.00 3.35
2471 6284 0.036875 GGAACCAGACAACCCAGAGG 59.963 60.000 0.00 0.00 40.04 3.69
2482 6295 1.592223 CCCAGAGGTTCGTCTGACC 59.408 63.158 19.65 0.00 46.02 4.02
2491 6304 3.135994 GGTTCGTCTGACCAGCTAAAAA 58.864 45.455 1.55 0.00 37.14 1.94
2565 6378 9.575783 TTACTAGAACCAAAACAATGTTTGAAC 57.424 29.630 12.50 3.47 40.29 3.18
2581 6394 6.387465 TGTTTGAACACAACGTTTCCAATTA 58.613 32.000 0.00 0.00 38.19 1.40
2587 6400 5.267776 ACACAACGTTTCCAATTAAAGACG 58.732 37.500 0.00 0.00 36.65 4.18
2598 6411 4.165779 CAATTAAAGACGCAACATCCACC 58.834 43.478 0.00 0.00 0.00 4.61
2637 6450 2.232208 CGCTGATGCATCCCACTATCTA 59.768 50.000 23.67 0.81 39.64 1.98
2643 6456 6.840527 TGATGCATCCCACTATCTAAATTGA 58.159 36.000 23.67 0.00 0.00 2.57
2644 6457 6.712095 TGATGCATCCCACTATCTAAATTGAC 59.288 38.462 23.67 0.00 0.00 3.18
2645 6458 5.376625 TGCATCCCACTATCTAAATTGACC 58.623 41.667 0.00 0.00 0.00 4.02
2646 6459 5.104151 TGCATCCCACTATCTAAATTGACCA 60.104 40.000 0.00 0.00 0.00 4.02
2647 6460 6.006449 GCATCCCACTATCTAAATTGACCAT 58.994 40.000 0.00 0.00 0.00 3.55
2648 6461 6.150140 GCATCCCACTATCTAAATTGACCATC 59.850 42.308 0.00 0.00 0.00 3.51
2649 6462 6.823286 TCCCACTATCTAAATTGACCATCA 57.177 37.500 0.00 0.00 0.00 3.07
2650 6463 6.591935 TCCCACTATCTAAATTGACCATCAC 58.408 40.000 0.00 0.00 0.00 3.06
2651 6464 6.157820 TCCCACTATCTAAATTGACCATCACA 59.842 38.462 0.00 0.00 0.00 3.58
2652 6465 7.000472 CCCACTATCTAAATTGACCATCACAT 59.000 38.462 0.00 0.00 0.00 3.21
2653 6466 8.156820 CCCACTATCTAAATTGACCATCACATA 58.843 37.037 0.00 0.00 0.00 2.29
2654 6467 9.559732 CCACTATCTAAATTGACCATCACATAA 57.440 33.333 0.00 0.00 0.00 1.90
2668 6481 9.683069 GACCATCACATAAATTCATAACATTCC 57.317 33.333 0.00 0.00 0.00 3.01
2669 6482 8.352201 ACCATCACATAAATTCATAACATTCCG 58.648 33.333 0.00 0.00 0.00 4.30
2670 6483 8.567104 CCATCACATAAATTCATAACATTCCGA 58.433 33.333 0.00 0.00 0.00 4.55
2674 6487 9.398170 CACATAAATTCATAACATTCCGATTCC 57.602 33.333 0.00 0.00 0.00 3.01
2675 6488 8.289618 ACATAAATTCATAACATTCCGATTCCG 58.710 33.333 0.00 0.00 0.00 4.30
2676 6489 4.749245 ATTCATAACATTCCGATTCCGC 57.251 40.909 0.00 0.00 0.00 5.54
2677 6490 2.489971 TCATAACATTCCGATTCCGCC 58.510 47.619 0.00 0.00 0.00 6.13
2678 6491 2.104111 TCATAACATTCCGATTCCGCCT 59.896 45.455 0.00 0.00 0.00 5.52
2679 6492 2.234300 TAACATTCCGATTCCGCCTC 57.766 50.000 0.00 0.00 0.00 4.70
2680 6493 0.541863 AACATTCCGATTCCGCCTCT 59.458 50.000 0.00 0.00 0.00 3.69
2681 6494 1.410004 ACATTCCGATTCCGCCTCTA 58.590 50.000 0.00 0.00 0.00 2.43
2682 6495 1.068741 ACATTCCGATTCCGCCTCTAC 59.931 52.381 0.00 0.00 0.00 2.59
2683 6496 1.341531 CATTCCGATTCCGCCTCTACT 59.658 52.381 0.00 0.00 0.00 2.57
2684 6497 1.030457 TTCCGATTCCGCCTCTACTC 58.970 55.000 0.00 0.00 0.00 2.59
2685 6498 1.164662 TCCGATTCCGCCTCTACTCG 61.165 60.000 0.00 0.00 0.00 4.18
2686 6499 1.164662 CCGATTCCGCCTCTACTCGA 61.165 60.000 0.00 0.00 0.00 4.04
2687 6500 0.875728 CGATTCCGCCTCTACTCGAT 59.124 55.000 0.00 0.00 0.00 3.59
2688 6501 2.074576 CGATTCCGCCTCTACTCGATA 58.925 52.381 0.00 0.00 0.00 2.92
2689 6502 2.678836 CGATTCCGCCTCTACTCGATAT 59.321 50.000 0.00 0.00 0.00 1.63
2690 6503 3.869832 CGATTCCGCCTCTACTCGATATA 59.130 47.826 0.00 0.00 0.00 0.86
2691 6504 4.331992 CGATTCCGCCTCTACTCGATATAA 59.668 45.833 0.00 0.00 0.00 0.98
2692 6505 5.564048 ATTCCGCCTCTACTCGATATAAC 57.436 43.478 0.00 0.00 0.00 1.89
2693 6506 3.341823 TCCGCCTCTACTCGATATAACC 58.658 50.000 0.00 0.00 0.00 2.85
2694 6507 2.422832 CCGCCTCTACTCGATATAACCC 59.577 54.545 0.00 0.00 0.00 4.11
2695 6508 3.345414 CGCCTCTACTCGATATAACCCT 58.655 50.000 0.00 0.00 0.00 4.34
2696 6509 4.511527 CGCCTCTACTCGATATAACCCTA 58.488 47.826 0.00 0.00 0.00 3.53
2697 6510 4.571580 CGCCTCTACTCGATATAACCCTAG 59.428 50.000 0.00 0.00 0.00 3.02
2698 6511 4.883006 GCCTCTACTCGATATAACCCTAGG 59.117 50.000 0.06 0.06 0.00 3.02
2699 6512 5.438833 CCTCTACTCGATATAACCCTAGGG 58.561 50.000 27.36 27.36 42.03 3.53
2700 6513 5.191323 CCTCTACTCGATATAACCCTAGGGA 59.809 48.000 35.38 13.91 38.96 4.20
2701 6514 6.310764 TCTACTCGATATAACCCTAGGGAG 57.689 45.833 35.38 19.97 38.96 4.30
2702 6515 5.789575 TCTACTCGATATAACCCTAGGGAGT 59.210 44.000 35.38 24.39 38.96 3.85
2703 6516 5.336491 ACTCGATATAACCCTAGGGAGTT 57.664 43.478 35.38 21.03 38.96 3.01
2704 6517 5.713807 ACTCGATATAACCCTAGGGAGTTT 58.286 41.667 35.38 20.28 38.96 2.66
2705 6518 5.539193 ACTCGATATAACCCTAGGGAGTTTG 59.461 44.000 35.38 16.36 38.96 2.93
2706 6519 4.282703 TCGATATAACCCTAGGGAGTTTGC 59.717 45.833 35.38 16.96 38.96 3.68
2707 6520 4.039973 CGATATAACCCTAGGGAGTTTGCA 59.960 45.833 35.38 12.18 38.96 4.08
2708 6521 5.454187 CGATATAACCCTAGGGAGTTTGCAA 60.454 44.000 35.38 10.91 38.96 4.08
2709 6522 4.668138 ATAACCCTAGGGAGTTTGCAAA 57.332 40.909 35.38 8.05 38.96 3.68
2710 6523 3.542969 AACCCTAGGGAGTTTGCAAAT 57.457 42.857 35.38 4.38 38.96 2.32
2711 6524 4.668138 AACCCTAGGGAGTTTGCAAATA 57.332 40.909 35.38 2.16 38.96 1.40
2712 6525 3.964411 ACCCTAGGGAGTTTGCAAATAC 58.036 45.455 35.38 11.98 38.96 1.89
2713 6526 3.332485 ACCCTAGGGAGTTTGCAAATACA 59.668 43.478 35.38 0.00 38.96 2.29
2714 6527 4.202631 ACCCTAGGGAGTTTGCAAATACAA 60.203 41.667 35.38 0.00 38.96 2.41
2715 6528 4.399303 CCCTAGGGAGTTTGCAAATACAAG 59.601 45.833 24.99 8.39 37.50 3.16
2716 6529 3.942130 AGGGAGTTTGCAAATACAAGC 57.058 42.857 16.21 0.80 0.00 4.01
2717 6530 2.562738 AGGGAGTTTGCAAATACAAGCC 59.437 45.455 16.21 10.12 31.76 4.35
2718 6531 2.353704 GGGAGTTTGCAAATACAAGCCC 60.354 50.000 16.21 14.83 31.76 5.19
2719 6532 2.298729 GGAGTTTGCAAATACAAGCCCA 59.701 45.455 16.21 0.00 31.76 5.36
2720 6533 3.055891 GGAGTTTGCAAATACAAGCCCAT 60.056 43.478 16.21 0.00 31.76 4.00
2721 6534 4.176271 GAGTTTGCAAATACAAGCCCATC 58.824 43.478 16.21 0.00 31.76 3.51
2722 6535 3.577848 AGTTTGCAAATACAAGCCCATCA 59.422 39.130 16.21 0.00 31.76 3.07
2723 6536 3.591196 TTGCAAATACAAGCCCATCAC 57.409 42.857 0.00 0.00 0.00 3.06
2724 6537 1.472082 TGCAAATACAAGCCCATCACG 59.528 47.619 0.00 0.00 0.00 4.35
2725 6538 1.798813 GCAAATACAAGCCCATCACGC 60.799 52.381 0.00 0.00 0.00 5.34
2726 6539 1.472082 CAAATACAAGCCCATCACGCA 59.528 47.619 0.00 0.00 0.00 5.24
2727 6540 2.057137 AATACAAGCCCATCACGCAT 57.943 45.000 0.00 0.00 0.00 4.73
2728 6541 2.057137 ATACAAGCCCATCACGCATT 57.943 45.000 0.00 0.00 0.00 3.56
2729 6542 1.093972 TACAAGCCCATCACGCATTG 58.906 50.000 0.00 0.00 0.00 2.82
2730 6543 1.517694 CAAGCCCATCACGCATTGC 60.518 57.895 0.00 0.00 0.00 3.56
2731 6544 2.713967 AAGCCCATCACGCATTGCC 61.714 57.895 2.41 0.00 0.00 4.52
2732 6545 3.451004 GCCCATCACGCATTGCCA 61.451 61.111 2.41 0.00 0.00 4.92
2733 6546 3.004326 GCCCATCACGCATTGCCAA 62.004 57.895 2.41 0.00 0.00 4.52
2734 6547 1.590665 CCCATCACGCATTGCCAAA 59.409 52.632 2.41 0.00 0.00 3.28
2735 6548 0.458889 CCCATCACGCATTGCCAAAG 60.459 55.000 2.41 0.00 0.00 2.77
2736 6549 1.079875 CCATCACGCATTGCCAAAGC 61.080 55.000 2.41 0.00 40.48 3.51
2737 6550 0.108992 CATCACGCATTGCCAAAGCT 60.109 50.000 2.41 0.00 40.80 3.74
2738 6551 0.604578 ATCACGCATTGCCAAAGCTT 59.395 45.000 2.41 0.00 40.80 3.74
2739 6552 0.039256 TCACGCATTGCCAAAGCTTC 60.039 50.000 0.00 0.00 40.80 3.86
2740 6553 0.318869 CACGCATTGCCAAAGCTTCA 60.319 50.000 0.00 0.00 40.80 3.02
2741 6554 0.038892 ACGCATTGCCAAAGCTTCAG 60.039 50.000 0.00 0.00 40.80 3.02
2742 6555 0.038892 CGCATTGCCAAAGCTTCAGT 60.039 50.000 0.00 0.00 40.80 3.41
2743 6556 1.199789 CGCATTGCCAAAGCTTCAGTA 59.800 47.619 0.00 0.00 40.80 2.74
2744 6557 2.730090 CGCATTGCCAAAGCTTCAGTAG 60.730 50.000 0.00 0.00 40.80 2.57
2745 6558 2.229784 GCATTGCCAAAGCTTCAGTAGT 59.770 45.455 0.00 0.00 40.80 2.73
2746 6559 3.671702 GCATTGCCAAAGCTTCAGTAGTC 60.672 47.826 0.00 0.00 40.80 2.59
2747 6560 2.928801 TGCCAAAGCTTCAGTAGTCA 57.071 45.000 0.00 0.00 40.80 3.41
2748 6561 3.207265 TGCCAAAGCTTCAGTAGTCAA 57.793 42.857 0.00 0.00 40.80 3.18
2749 6562 2.878406 TGCCAAAGCTTCAGTAGTCAAC 59.122 45.455 0.00 0.00 40.80 3.18
2750 6563 2.878406 GCCAAAGCTTCAGTAGTCAACA 59.122 45.455 0.00 0.00 35.50 3.33
2751 6564 3.304057 GCCAAAGCTTCAGTAGTCAACAC 60.304 47.826 0.00 0.00 35.50 3.32
2752 6565 3.876914 CCAAAGCTTCAGTAGTCAACACA 59.123 43.478 0.00 0.00 0.00 3.72
2753 6566 4.516698 CCAAAGCTTCAGTAGTCAACACAT 59.483 41.667 0.00 0.00 0.00 3.21
2754 6567 5.334414 CCAAAGCTTCAGTAGTCAACACATC 60.334 44.000 0.00 0.00 0.00 3.06
2755 6568 4.881019 AGCTTCAGTAGTCAACACATCT 57.119 40.909 0.00 0.00 0.00 2.90
2756 6569 4.564041 AGCTTCAGTAGTCAACACATCTG 58.436 43.478 0.00 0.00 0.00 2.90
2757 6570 3.124297 GCTTCAGTAGTCAACACATCTGC 59.876 47.826 0.00 0.00 0.00 4.26
2758 6571 3.319137 TCAGTAGTCAACACATCTGCC 57.681 47.619 0.00 0.00 0.00 4.85
2759 6572 2.028112 TCAGTAGTCAACACATCTGCCC 60.028 50.000 0.00 0.00 0.00 5.36
2760 6573 1.279271 AGTAGTCAACACATCTGCCCC 59.721 52.381 0.00 0.00 0.00 5.80
2761 6574 1.003118 GTAGTCAACACATCTGCCCCA 59.997 52.381 0.00 0.00 0.00 4.96
2762 6575 0.250901 AGTCAACACATCTGCCCCAC 60.251 55.000 0.00 0.00 0.00 4.61
2763 6576 1.302431 TCAACACATCTGCCCCACG 60.302 57.895 0.00 0.00 0.00 4.94
2764 6577 1.302431 CAACACATCTGCCCCACGA 60.302 57.895 0.00 0.00 0.00 4.35
2765 6578 0.677731 CAACACATCTGCCCCACGAT 60.678 55.000 0.00 0.00 0.00 3.73
2766 6579 0.392998 AACACATCTGCCCCACGATC 60.393 55.000 0.00 0.00 0.00 3.69
2767 6580 1.221566 CACATCTGCCCCACGATCA 59.778 57.895 0.00 0.00 0.00 2.92
2768 6581 0.392863 CACATCTGCCCCACGATCAA 60.393 55.000 0.00 0.00 0.00 2.57
2769 6582 0.548031 ACATCTGCCCCACGATCAAT 59.452 50.000 0.00 0.00 0.00 2.57
2770 6583 0.949397 CATCTGCCCCACGATCAATG 59.051 55.000 0.00 0.00 0.00 2.82
2771 6584 0.548031 ATCTGCCCCACGATCAATGT 59.452 50.000 0.00 0.00 0.00 2.71
2772 6585 1.199615 TCTGCCCCACGATCAATGTA 58.800 50.000 0.00 0.00 0.00 2.29
2773 6586 1.134521 TCTGCCCCACGATCAATGTAC 60.135 52.381 0.00 0.00 0.00 2.90
2774 6587 0.908910 TGCCCCACGATCAATGTACT 59.091 50.000 0.00 0.00 0.00 2.73
2775 6588 1.280710 TGCCCCACGATCAATGTACTT 59.719 47.619 0.00 0.00 0.00 2.24
2776 6589 1.670811 GCCCCACGATCAATGTACTTG 59.329 52.381 0.00 0.00 36.09 3.16
2777 6590 1.670811 CCCCACGATCAATGTACTTGC 59.329 52.381 0.00 0.00 34.66 4.01
2778 6591 2.355197 CCCACGATCAATGTACTTGCA 58.645 47.619 0.00 0.00 34.66 4.08
2779 6592 2.095853 CCCACGATCAATGTACTTGCAC 59.904 50.000 0.00 0.00 34.66 4.57
2780 6593 3.002791 CCACGATCAATGTACTTGCACT 58.997 45.455 0.00 0.00 34.66 4.40
2781 6594 3.062639 CCACGATCAATGTACTTGCACTC 59.937 47.826 0.00 0.00 34.66 3.51
2782 6595 3.679502 CACGATCAATGTACTTGCACTCA 59.320 43.478 0.00 0.00 34.66 3.41
2783 6596 3.928992 ACGATCAATGTACTTGCACTCAG 59.071 43.478 0.00 0.00 34.66 3.35
2784 6597 3.242220 CGATCAATGTACTTGCACTCAGC 60.242 47.826 0.00 0.00 45.96 4.26
2794 6607 3.769228 GCACTCAGCAGCAAGAAAG 57.231 52.632 0.00 0.00 44.79 2.62
2795 6608 0.950116 GCACTCAGCAGCAAGAAAGT 59.050 50.000 0.00 0.00 44.79 2.66
2796 6609 1.336125 GCACTCAGCAGCAAGAAAGTT 59.664 47.619 0.00 0.00 44.79 2.66
2797 6610 2.223665 GCACTCAGCAGCAAGAAAGTTT 60.224 45.455 0.00 0.00 44.79 2.66
2798 6611 3.625938 CACTCAGCAGCAAGAAAGTTTC 58.374 45.455 7.57 7.57 0.00 2.78
2799 6612 2.620585 ACTCAGCAGCAAGAAAGTTTCC 59.379 45.455 12.05 0.00 0.00 3.13
2800 6613 1.956477 TCAGCAGCAAGAAAGTTTCCC 59.044 47.619 12.05 1.64 0.00 3.97
2801 6614 1.959282 CAGCAGCAAGAAAGTTTCCCT 59.041 47.619 12.05 3.90 0.00 4.20
2802 6615 2.363359 CAGCAGCAAGAAAGTTTCCCTT 59.637 45.455 12.05 0.00 33.79 3.95
2803 6616 2.363359 AGCAGCAAGAAAGTTTCCCTTG 59.637 45.455 12.05 11.68 40.00 3.61
2804 6617 2.101415 GCAGCAAGAAAGTTTCCCTTGT 59.899 45.455 12.05 0.85 39.41 3.16
2805 6618 3.796844 GCAGCAAGAAAGTTTCCCTTGTC 60.797 47.826 12.05 7.62 39.41 3.18
2806 6619 3.381272 CAGCAAGAAAGTTTCCCTTGTCA 59.619 43.478 12.05 0.00 39.41 3.58
2807 6620 4.038402 CAGCAAGAAAGTTTCCCTTGTCAT 59.962 41.667 12.05 0.62 39.41 3.06
2808 6621 4.279420 AGCAAGAAAGTTTCCCTTGTCATC 59.721 41.667 12.05 0.00 39.41 2.92
2809 6622 4.279420 GCAAGAAAGTTTCCCTTGTCATCT 59.721 41.667 12.05 0.00 39.41 2.90
2810 6623 5.563671 GCAAGAAAGTTTCCCTTGTCATCTC 60.564 44.000 12.05 0.00 39.41 2.75
2811 6624 5.574970 AGAAAGTTTCCCTTGTCATCTCT 57.425 39.130 12.05 0.00 32.32 3.10
2812 6625 5.312079 AGAAAGTTTCCCTTGTCATCTCTG 58.688 41.667 12.05 0.00 32.32 3.35
2813 6626 4.982241 AAGTTTCCCTTGTCATCTCTGA 57.018 40.909 0.00 0.00 30.18 3.27
2814 6627 5.511386 AAGTTTCCCTTGTCATCTCTGAT 57.489 39.130 0.00 0.00 32.98 2.90
2815 6628 4.841422 AGTTTCCCTTGTCATCTCTGATG 58.159 43.478 1.45 1.45 32.98 3.07
2816 6629 4.533707 AGTTTCCCTTGTCATCTCTGATGA 59.466 41.667 6.19 6.19 32.98 2.92
2817 6630 5.191323 AGTTTCCCTTGTCATCTCTGATGAT 59.809 40.000 12.53 0.00 32.98 2.45
2818 6631 6.385176 AGTTTCCCTTGTCATCTCTGATGATA 59.615 38.462 12.53 7.98 32.98 2.15
2819 6632 6.813293 TTCCCTTGTCATCTCTGATGATAA 57.187 37.500 12.53 14.10 32.98 1.75
2820 6633 6.813293 TCCCTTGTCATCTCTGATGATAAA 57.187 37.500 16.38 11.89 32.98 1.40
2821 6634 7.384524 TCCCTTGTCATCTCTGATGATAAAT 57.615 36.000 16.38 0.00 32.98 1.40
2822 6635 7.222161 TCCCTTGTCATCTCTGATGATAAATG 58.778 38.462 16.38 11.92 32.98 2.32
2823 6636 6.996879 CCCTTGTCATCTCTGATGATAAATGT 59.003 38.462 16.38 0.00 32.98 2.71
2824 6637 7.501559 CCCTTGTCATCTCTGATGATAAATGTT 59.498 37.037 16.38 0.00 32.98 2.71
2825 6638 8.343366 CCTTGTCATCTCTGATGATAAATGTTG 58.657 37.037 16.38 7.99 32.98 3.33
2826 6639 8.797350 TTGTCATCTCTGATGATAAATGTTGT 57.203 30.769 14.32 0.00 32.98 3.32
2827 6640 9.889128 TTGTCATCTCTGATGATAAATGTTGTA 57.111 29.630 14.32 0.00 32.98 2.41
2828 6641 9.538508 TGTCATCTCTGATGATAAATGTTGTAG 57.461 33.333 12.53 0.00 32.98 2.74
2829 6642 8.494347 GTCATCTCTGATGATAAATGTTGTAGC 58.506 37.037 12.53 0.00 32.98 3.58
2830 6643 8.427276 TCATCTCTGATGATAAATGTTGTAGCT 58.573 33.333 6.19 0.00 0.00 3.32
2831 6644 8.710551 CATCTCTGATGATAAATGTTGTAGCTC 58.289 37.037 0.00 0.00 0.00 4.09
2832 6645 7.212976 TCTCTGATGATAAATGTTGTAGCTCC 58.787 38.462 0.00 0.00 0.00 4.70
2833 6646 7.070447 TCTCTGATGATAAATGTTGTAGCTCCT 59.930 37.037 0.00 0.00 0.00 3.69
2834 6647 6.988580 TCTGATGATAAATGTTGTAGCTCCTG 59.011 38.462 0.00 0.00 0.00 3.86
2835 6648 5.528690 TGATGATAAATGTTGTAGCTCCTGC 59.471 40.000 0.00 0.00 40.05 4.85
2845 6658 3.617368 GCTCCTGCTCCCTCGTTA 58.383 61.111 0.00 0.00 36.03 3.18
2846 6659 1.898154 GCTCCTGCTCCCTCGTTAA 59.102 57.895 0.00 0.00 36.03 2.01
2847 6660 0.179097 GCTCCTGCTCCCTCGTTAAG 60.179 60.000 0.00 0.00 36.03 1.85
2848 6661 1.475403 CTCCTGCTCCCTCGTTAAGA 58.525 55.000 0.00 0.00 0.00 2.10
2849 6662 1.825474 CTCCTGCTCCCTCGTTAAGAA 59.175 52.381 0.00 0.00 0.00 2.52
2850 6663 2.233922 CTCCTGCTCCCTCGTTAAGAAA 59.766 50.000 0.00 0.00 0.00 2.52
2851 6664 2.635915 TCCTGCTCCCTCGTTAAGAAAA 59.364 45.455 0.00 0.00 0.00 2.29
2852 6665 3.071892 TCCTGCTCCCTCGTTAAGAAAAA 59.928 43.478 0.00 0.00 0.00 1.94
2872 6685 5.835113 AAAATGCCGCATCTACATTAACT 57.165 34.783 6.27 0.00 33.01 2.24
2873 6686 5.835113 AAATGCCGCATCTACATTAACTT 57.165 34.783 6.27 0.00 33.01 2.66
2874 6687 5.835113 AATGCCGCATCTACATTAACTTT 57.165 34.783 6.27 0.00 32.42 2.66
2875 6688 5.835113 ATGCCGCATCTACATTAACTTTT 57.165 34.783 0.00 0.00 0.00 2.27
2876 6689 6.935741 ATGCCGCATCTACATTAACTTTTA 57.064 33.333 0.00 0.00 0.00 1.52
2877 6690 6.745159 TGCCGCATCTACATTAACTTTTAA 57.255 33.333 0.00 0.00 0.00 1.52
2878 6691 7.147143 TGCCGCATCTACATTAACTTTTAAA 57.853 32.000 0.00 0.00 0.00 1.52
2879 6692 7.594714 TGCCGCATCTACATTAACTTTTAAAA 58.405 30.769 0.00 0.00 0.00 1.52
2880 6693 7.539366 TGCCGCATCTACATTAACTTTTAAAAC 59.461 33.333 0.00 0.00 0.00 2.43
2881 6694 7.753580 GCCGCATCTACATTAACTTTTAAAACT 59.246 33.333 0.00 0.00 0.00 2.66
2882 6695 9.061610 CCGCATCTACATTAACTTTTAAAACTG 57.938 33.333 0.00 0.00 0.00 3.16
2883 6696 9.820229 CGCATCTACATTAACTTTTAAAACTGA 57.180 29.630 0.00 0.00 0.00 3.41
2887 6700 9.856162 TCTACATTAACTTTTAAAACTGAGGGT 57.144 29.630 0.00 0.00 0.00 4.34
2890 6703 8.573885 ACATTAACTTTTAAAACTGAGGGTAGC 58.426 33.333 0.00 0.00 0.00 3.58
2891 6704 8.793592 CATTAACTTTTAAAACTGAGGGTAGCT 58.206 33.333 0.00 0.00 0.00 3.32
2892 6705 8.756486 TTAACTTTTAAAACTGAGGGTAGCTT 57.244 30.769 0.00 0.00 0.00 3.74
2893 6706 7.655521 AACTTTTAAAACTGAGGGTAGCTTT 57.344 32.000 0.00 0.00 0.00 3.51
2894 6707 8.756486 AACTTTTAAAACTGAGGGTAGCTTTA 57.244 30.769 0.00 0.00 0.00 1.85
2895 6708 8.392372 ACTTTTAAAACTGAGGGTAGCTTTAG 57.608 34.615 0.00 0.00 0.00 1.85
2896 6709 7.997223 ACTTTTAAAACTGAGGGTAGCTTTAGT 59.003 33.333 0.00 0.00 0.00 2.24
2897 6710 7.974482 TTTAAAACTGAGGGTAGCTTTAGTC 57.026 36.000 1.94 0.00 0.00 2.59
2898 6711 4.554960 AAACTGAGGGTAGCTTTAGTCC 57.445 45.455 1.94 0.00 0.00 3.85
2899 6712 3.185880 ACTGAGGGTAGCTTTAGTCCA 57.814 47.619 0.00 0.00 0.00 4.02
2900 6713 3.100671 ACTGAGGGTAGCTTTAGTCCAG 58.899 50.000 0.00 0.00 0.00 3.86
2901 6714 2.432510 CTGAGGGTAGCTTTAGTCCAGG 59.567 54.545 0.00 0.00 0.00 4.45
2902 6715 2.225547 TGAGGGTAGCTTTAGTCCAGGT 60.226 50.000 0.00 0.00 0.00 4.00
2903 6716 2.431419 GAGGGTAGCTTTAGTCCAGGTC 59.569 54.545 0.00 0.00 0.00 3.85
2904 6717 2.185387 GGGTAGCTTTAGTCCAGGTCA 58.815 52.381 0.00 0.00 0.00 4.02
2905 6718 2.772515 GGGTAGCTTTAGTCCAGGTCAT 59.227 50.000 0.00 0.00 0.00 3.06
2906 6719 3.432326 GGGTAGCTTTAGTCCAGGTCATG 60.432 52.174 0.00 0.00 0.00 3.07
2907 6720 3.197983 GGTAGCTTTAGTCCAGGTCATGT 59.802 47.826 0.00 0.00 0.00 3.21
2908 6721 3.618690 AGCTTTAGTCCAGGTCATGTC 57.381 47.619 0.00 0.00 0.00 3.06
2909 6722 2.237392 AGCTTTAGTCCAGGTCATGTCC 59.763 50.000 0.03 0.03 0.00 4.02
2910 6723 2.681097 GCTTTAGTCCAGGTCATGTCCC 60.681 54.545 5.28 0.73 0.00 4.46
2911 6724 2.642171 TTAGTCCAGGTCATGTCCCT 57.358 50.000 5.28 3.20 0.00 4.20
2913 6726 0.178891 AGTCCAGGTCATGTCCCTGT 60.179 55.000 23.53 10.09 46.68 4.00
2914 6727 0.250513 GTCCAGGTCATGTCCCTGTC 59.749 60.000 23.53 16.03 46.68 3.51
2915 6728 0.909610 TCCAGGTCATGTCCCTGTCC 60.910 60.000 23.53 5.94 46.68 4.02
2916 6729 1.219124 CAGGTCATGTCCCTGTCCG 59.781 63.158 19.74 2.00 43.73 4.79
2917 6730 1.078528 AGGTCATGTCCCTGTCCGA 59.921 57.895 5.28 0.00 30.74 4.55
2918 6731 0.544357 AGGTCATGTCCCTGTCCGAA 60.544 55.000 5.28 0.00 30.74 4.30
2919 6732 0.391263 GGTCATGTCCCTGTCCGAAC 60.391 60.000 0.00 0.00 0.00 3.95
2920 6733 0.320374 GTCATGTCCCTGTCCGAACA 59.680 55.000 0.00 0.00 0.00 3.18
2921 6734 0.320374 TCATGTCCCTGTCCGAACAC 59.680 55.000 0.00 0.00 0.00 3.32
2922 6735 1.014044 CATGTCCCTGTCCGAACACG 61.014 60.000 0.00 0.00 0.00 4.49
2924 6737 2.522436 TCCCTGTCCGAACACGGT 60.522 61.111 8.46 0.00 45.96 4.83
2925 6738 2.048503 CCCTGTCCGAACACGGTC 60.049 66.667 8.46 3.97 45.96 4.79
2926 6739 2.571216 CCCTGTCCGAACACGGTCT 61.571 63.158 8.46 0.00 45.96 3.85
2927 6740 1.246056 CCCTGTCCGAACACGGTCTA 61.246 60.000 8.46 0.00 45.96 2.59
2928 6741 0.815734 CCTGTCCGAACACGGTCTAT 59.184 55.000 8.46 0.00 45.96 1.98
2929 6742 2.019249 CCTGTCCGAACACGGTCTATA 58.981 52.381 8.46 0.00 45.96 1.31
2930 6743 2.033049 CCTGTCCGAACACGGTCTATAG 59.967 54.545 8.46 0.00 45.96 1.31
2931 6744 2.681848 CTGTCCGAACACGGTCTATAGT 59.318 50.000 8.46 0.00 45.96 2.12
2932 6745 3.084039 TGTCCGAACACGGTCTATAGTT 58.916 45.455 8.46 0.00 45.96 2.24
2933 6746 3.507233 TGTCCGAACACGGTCTATAGTTT 59.493 43.478 8.46 0.00 45.96 2.66
2934 6747 4.022068 TGTCCGAACACGGTCTATAGTTTT 60.022 41.667 8.46 0.00 45.96 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.612066 TTGTGACTGATGTATATCTATGCAAAA 57.388 29.630 0.00 0.00 32.20 2.44
1 2 9.612066 TTTGTGACTGATGTATATCTATGCAAA 57.388 29.630 0.00 4.17 32.20 3.68
2 3 9.045223 GTTTGTGACTGATGTATATCTATGCAA 57.955 33.333 0.00 0.00 32.20 4.08
3 4 8.424133 AGTTTGTGACTGATGTATATCTATGCA 58.576 33.333 0.89 0.00 37.17 3.96
4 5 8.824159 AGTTTGTGACTGATGTATATCTATGC 57.176 34.615 0.89 0.00 37.17 3.14
8 9 9.950496 AAGAAAGTTTGTGACTGATGTATATCT 57.050 29.630 0.00 0.00 39.00 1.98
9 10 9.979270 CAAGAAAGTTTGTGACTGATGTATATC 57.021 33.333 0.00 0.00 39.00 1.63
10 11 8.454106 GCAAGAAAGTTTGTGACTGATGTATAT 58.546 33.333 0.00 0.00 39.00 0.86
11 12 7.443879 TGCAAGAAAGTTTGTGACTGATGTATA 59.556 33.333 0.00 0.00 39.00 1.47
12 13 6.262944 TGCAAGAAAGTTTGTGACTGATGTAT 59.737 34.615 0.00 0.00 39.00 2.29
13 14 5.588246 TGCAAGAAAGTTTGTGACTGATGTA 59.412 36.000 0.00 0.00 39.00 2.29
14 15 4.398988 TGCAAGAAAGTTTGTGACTGATGT 59.601 37.500 0.00 0.00 39.00 3.06
15 16 4.923893 TGCAAGAAAGTTTGTGACTGATG 58.076 39.130 0.00 0.00 39.00 3.07
16 17 5.300034 TGATGCAAGAAAGTTTGTGACTGAT 59.700 36.000 0.00 0.00 39.00 2.90
17 18 4.639755 TGATGCAAGAAAGTTTGTGACTGA 59.360 37.500 0.00 0.00 39.00 3.41
18 19 4.923893 TGATGCAAGAAAGTTTGTGACTG 58.076 39.130 0.00 0.00 39.00 3.51
19 20 4.498682 GCTGATGCAAGAAAGTTTGTGACT 60.499 41.667 0.00 0.00 38.66 3.41
20 21 3.732721 GCTGATGCAAGAAAGTTTGTGAC 59.267 43.478 0.00 0.00 39.41 3.67
21 22 3.968649 GCTGATGCAAGAAAGTTTGTGA 58.031 40.909 0.00 0.00 39.41 3.58
35 36 4.260132 CGTTTAGATCACTCTTGCTGATGC 60.260 45.833 0.00 0.00 34.74 3.91
36 37 4.260132 GCGTTTAGATCACTCTTGCTGATG 60.260 45.833 0.00 0.00 32.66 3.07
37 38 3.868077 GCGTTTAGATCACTCTTGCTGAT 59.132 43.478 0.00 0.00 32.66 2.90
38 39 3.056536 AGCGTTTAGATCACTCTTGCTGA 60.057 43.478 0.00 0.00 32.66 4.26
39 40 3.257393 AGCGTTTAGATCACTCTTGCTG 58.743 45.455 0.00 0.00 32.66 4.41
40 41 3.194542 AGAGCGTTTAGATCACTCTTGCT 59.805 43.478 0.00 0.00 37.82 3.91
41 42 3.516615 AGAGCGTTTAGATCACTCTTGC 58.483 45.455 0.00 0.00 37.82 4.01
42 43 9.469807 AATATAAGAGCGTTTAGATCACTCTTG 57.530 33.333 12.53 0.00 44.97 3.02
44 45 9.685828 GAAATATAAGAGCGTTTAGATCACTCT 57.314 33.333 0.00 0.00 39.34 3.24
45 46 9.685828 AGAAATATAAGAGCGTTTAGATCACTC 57.314 33.333 0.00 0.00 37.82 3.51
73 74 9.809096 CAGATTTGAGTAGCACTCTCTTTTATA 57.191 33.333 14.60 0.00 45.27 0.98
74 75 8.317679 ACAGATTTGAGTAGCACTCTCTTTTAT 58.682 33.333 14.60 3.29 45.27 1.40
75 76 7.671302 ACAGATTTGAGTAGCACTCTCTTTTA 58.329 34.615 14.60 0.00 45.27 1.52
76 77 6.529220 ACAGATTTGAGTAGCACTCTCTTTT 58.471 36.000 14.60 1.27 45.27 2.27
77 78 6.107901 ACAGATTTGAGTAGCACTCTCTTT 57.892 37.500 14.60 3.70 45.27 2.52
78 79 5.736951 ACAGATTTGAGTAGCACTCTCTT 57.263 39.130 14.60 3.03 45.27 2.85
79 80 6.842437 TTACAGATTTGAGTAGCACTCTCT 57.158 37.500 14.60 8.45 45.27 3.10
80 81 7.221838 GTGATTACAGATTTGAGTAGCACTCTC 59.778 40.741 14.60 6.80 45.27 3.20
81 82 7.038659 GTGATTACAGATTTGAGTAGCACTCT 58.961 38.462 14.60 0.00 45.27 3.24
82 83 6.020281 CGTGATTACAGATTTGAGTAGCACTC 60.020 42.308 8.75 8.75 45.26 3.51
83 84 5.807520 CGTGATTACAGATTTGAGTAGCACT 59.192 40.000 0.00 0.00 31.21 4.40
84 85 5.500931 GCGTGATTACAGATTTGAGTAGCAC 60.501 44.000 0.00 0.00 0.00 4.40
85 86 4.566759 GCGTGATTACAGATTTGAGTAGCA 59.433 41.667 0.00 0.00 0.00 3.49
86 87 4.317418 CGCGTGATTACAGATTTGAGTAGC 60.317 45.833 0.00 0.00 0.00 3.58
87 88 4.207224 CCGCGTGATTACAGATTTGAGTAG 59.793 45.833 4.92 0.00 0.00 2.57
113 114 0.107945 GCCTCCTCGCAGATGTTCTT 60.108 55.000 0.00 0.00 33.89 2.52
139 142 2.917971 CGAGAAAGAAGAACAGGCTACG 59.082 50.000 0.00 0.00 0.00 3.51
203 212 0.898789 ACACCCTCTACTGACACCGG 60.899 60.000 0.00 0.00 0.00 5.28
222 231 1.948834 TCACGACGTACAAGGAAGACA 59.051 47.619 0.00 0.00 0.00 3.41
243 252 2.667199 TGGAGCTCGACGTCGACA 60.667 61.111 34.97 27.18 44.22 4.35
530 2765 1.001269 TCGTCTCCGTCCACCTCAT 60.001 57.895 0.00 0.00 35.01 2.90
1088 3561 4.025730 CCGTATTCCTTGTCGATTGTCATG 60.026 45.833 0.00 0.00 0.00 3.07
1090 3563 3.517602 CCGTATTCCTTGTCGATTGTCA 58.482 45.455 0.00 0.00 0.00 3.58
1091 3564 2.284417 GCCGTATTCCTTGTCGATTGTC 59.716 50.000 0.00 0.00 0.00 3.18
1093 3566 2.276201 TGCCGTATTCCTTGTCGATTG 58.724 47.619 0.00 0.00 0.00 2.67
1094 3567 2.684001 TGCCGTATTCCTTGTCGATT 57.316 45.000 0.00 0.00 0.00 3.34
1412 5219 2.818132 GAGCTGATGACCTCCCCG 59.182 66.667 0.00 0.00 0.00 5.73
1571 5378 1.673993 TGGTTGGCCGTGCAGTATG 60.674 57.895 0.00 0.00 37.67 2.39
1676 5483 5.847111 TCTGTCGTATGTATAGCAAGGTT 57.153 39.130 0.00 0.00 0.00 3.50
1677 5484 5.847111 TTCTGTCGTATGTATAGCAAGGT 57.153 39.130 0.00 0.00 0.00 3.50
1679 5486 5.119279 GGCATTCTGTCGTATGTATAGCAAG 59.881 44.000 0.00 0.00 0.00 4.01
1682 5489 4.623167 CAGGCATTCTGTCGTATGTATAGC 59.377 45.833 0.00 0.00 38.64 2.97
1697 5504 1.732259 CGTAGTGTTGGACAGGCATTC 59.268 52.381 0.00 0.00 0.00 2.67
1698 5505 1.346395 TCGTAGTGTTGGACAGGCATT 59.654 47.619 0.00 0.00 0.00 3.56
1699 5506 0.973632 TCGTAGTGTTGGACAGGCAT 59.026 50.000 0.00 0.00 0.00 4.40
1700 5507 0.973632 ATCGTAGTGTTGGACAGGCA 59.026 50.000 0.00 0.00 0.00 4.75
1701 5508 2.094762 AATCGTAGTGTTGGACAGGC 57.905 50.000 0.00 0.00 0.00 4.85
1702 5509 4.398358 TCTCTAATCGTAGTGTTGGACAGG 59.602 45.833 0.00 0.00 0.00 4.00
1703 5510 5.106277 TGTCTCTAATCGTAGTGTTGGACAG 60.106 44.000 0.00 0.00 0.00 3.51
1704 5511 4.763279 TGTCTCTAATCGTAGTGTTGGACA 59.237 41.667 0.00 0.00 0.00 4.02
1705 5512 5.306532 TGTCTCTAATCGTAGTGTTGGAC 57.693 43.478 0.00 0.00 0.00 4.02
1706 5513 5.970317 TTGTCTCTAATCGTAGTGTTGGA 57.030 39.130 0.00 0.00 0.00 3.53
1707 5514 6.590292 ACAATTGTCTCTAATCGTAGTGTTGG 59.410 38.462 4.92 0.00 0.00 3.77
1708 5515 7.582435 ACAATTGTCTCTAATCGTAGTGTTG 57.418 36.000 4.92 0.00 0.00 3.33
1709 5516 8.737175 TCTACAATTGTCTCTAATCGTAGTGTT 58.263 33.333 15.85 0.00 32.19 3.32
1710 5517 8.277490 TCTACAATTGTCTCTAATCGTAGTGT 57.723 34.615 15.85 0.00 32.19 3.55
1715 5522 9.953697 GAGTTATCTACAATTGTCTCTAATCGT 57.046 33.333 15.85 1.47 0.00 3.73
1716 5523 9.952188 TGAGTTATCTACAATTGTCTCTAATCG 57.048 33.333 15.85 0.00 0.00 3.34
1725 5532 9.396022 CCCATAAACTGAGTTATCTACAATTGT 57.604 33.333 16.68 16.68 0.00 2.71
1726 5533 9.613428 TCCCATAAACTGAGTTATCTACAATTG 57.387 33.333 3.24 3.24 0.00 2.32
1727 5534 9.614792 GTCCCATAAACTGAGTTATCTACAATT 57.385 33.333 0.00 0.00 0.00 2.32
1728 5535 8.768397 TGTCCCATAAACTGAGTTATCTACAAT 58.232 33.333 0.00 0.00 0.00 2.71
1729 5536 8.141298 TGTCCCATAAACTGAGTTATCTACAA 57.859 34.615 0.00 0.00 0.00 2.41
1730 5537 7.727578 TGTCCCATAAACTGAGTTATCTACA 57.272 36.000 0.00 0.00 0.00 2.74
1731 5538 9.915629 CTATGTCCCATAAACTGAGTTATCTAC 57.084 37.037 0.00 0.00 0.00 2.59
1732 5539 8.585881 GCTATGTCCCATAAACTGAGTTATCTA 58.414 37.037 0.00 0.00 0.00 1.98
1733 5540 7.071196 TGCTATGTCCCATAAACTGAGTTATCT 59.929 37.037 0.00 0.00 0.00 1.98
1734 5541 7.217200 TGCTATGTCCCATAAACTGAGTTATC 58.783 38.462 0.00 0.00 0.00 1.75
1735 5542 7.136822 TGCTATGTCCCATAAACTGAGTTAT 57.863 36.000 0.00 0.00 0.00 1.89
1736 5543 6.553953 TGCTATGTCCCATAAACTGAGTTA 57.446 37.500 0.00 0.00 0.00 2.24
1737 5544 5.435686 TGCTATGTCCCATAAACTGAGTT 57.564 39.130 0.00 0.00 0.00 3.01
1738 5545 5.636903 ATGCTATGTCCCATAAACTGAGT 57.363 39.130 0.00 0.00 0.00 3.41
1739 5546 6.949352 AAATGCTATGTCCCATAAACTGAG 57.051 37.500 0.00 0.00 0.00 3.35
1740 5547 7.801104 TCTAAATGCTATGTCCCATAAACTGA 58.199 34.615 0.00 0.00 0.00 3.41
1741 5548 7.933577 TCTCTAAATGCTATGTCCCATAAACTG 59.066 37.037 0.00 0.00 0.00 3.16
1742 5549 8.034313 TCTCTAAATGCTATGTCCCATAAACT 57.966 34.615 0.00 0.00 0.00 2.66
1743 5550 8.725148 CATCTCTAAATGCTATGTCCCATAAAC 58.275 37.037 0.00 0.00 0.00 2.01
1744 5551 8.659527 TCATCTCTAAATGCTATGTCCCATAAA 58.340 33.333 0.00 0.00 0.00 1.40
1745 5552 8.206126 TCATCTCTAAATGCTATGTCCCATAA 57.794 34.615 0.00 0.00 0.00 1.90
1746 5553 7.797121 TCATCTCTAAATGCTATGTCCCATA 57.203 36.000 0.00 0.00 0.00 2.74
1747 5554 6.692849 TCATCTCTAAATGCTATGTCCCAT 57.307 37.500 0.00 0.00 0.00 4.00
1748 5555 6.692849 ATCATCTCTAAATGCTATGTCCCA 57.307 37.500 0.00 0.00 0.00 4.37
1749 5556 7.226325 GCATATCATCTCTAAATGCTATGTCCC 59.774 40.741 8.61 0.00 37.74 4.46
1750 5557 8.140677 GCATATCATCTCTAAATGCTATGTCC 57.859 38.462 8.61 0.00 37.74 4.02
1764 5571 5.119931 ACAACGAGAGAGCATATCATCTC 57.880 43.478 5.81 5.81 41.90 2.75
1765 5572 6.832520 ATACAACGAGAGAGCATATCATCT 57.167 37.500 0.00 0.00 0.00 2.90
1766 5573 8.240682 ACTAATACAACGAGAGAGCATATCATC 58.759 37.037 0.00 0.00 0.00 2.92
1767 5574 8.116651 ACTAATACAACGAGAGAGCATATCAT 57.883 34.615 0.00 0.00 0.00 2.45
1768 5575 7.511959 ACTAATACAACGAGAGAGCATATCA 57.488 36.000 0.00 0.00 0.00 2.15
1769 5576 6.739100 CGACTAATACAACGAGAGAGCATATC 59.261 42.308 0.00 0.00 0.00 1.63
1770 5577 6.348622 CCGACTAATACAACGAGAGAGCATAT 60.349 42.308 0.00 0.00 0.00 1.78
1771 5578 5.049612 CCGACTAATACAACGAGAGAGCATA 60.050 44.000 0.00 0.00 0.00 3.14
1772 5579 4.261238 CCGACTAATACAACGAGAGAGCAT 60.261 45.833 0.00 0.00 0.00 3.79
1773 5580 3.064958 CCGACTAATACAACGAGAGAGCA 59.935 47.826 0.00 0.00 0.00 4.26
1774 5581 3.311871 TCCGACTAATACAACGAGAGAGC 59.688 47.826 0.00 0.00 0.00 4.09
1775 5582 4.550447 CGTCCGACTAATACAACGAGAGAG 60.550 50.000 0.00 0.00 32.17 3.20
1776 5583 3.308053 CGTCCGACTAATACAACGAGAGA 59.692 47.826 0.00 0.00 32.17 3.10
1777 5584 3.308053 TCGTCCGACTAATACAACGAGAG 59.692 47.826 0.00 0.00 34.57 3.20
1778 5585 3.261580 TCGTCCGACTAATACAACGAGA 58.738 45.455 0.00 0.00 34.57 4.04
1779 5586 3.605406 CTCGTCCGACTAATACAACGAG 58.395 50.000 8.13 8.13 46.57 4.18
1780 5587 3.261580 TCTCGTCCGACTAATACAACGA 58.738 45.455 0.00 0.00 37.54 3.85
1781 5588 3.663464 TCTCGTCCGACTAATACAACG 57.337 47.619 0.00 0.00 0.00 4.10
1782 5589 5.061435 GGTTTTCTCGTCCGACTAATACAAC 59.939 44.000 0.00 0.00 0.00 3.32
1783 5590 5.163513 GGTTTTCTCGTCCGACTAATACAA 58.836 41.667 0.00 0.00 0.00 2.41
1784 5591 4.218200 TGGTTTTCTCGTCCGACTAATACA 59.782 41.667 0.00 0.00 0.00 2.29
1785 5592 4.737054 TGGTTTTCTCGTCCGACTAATAC 58.263 43.478 0.00 0.00 0.00 1.89
1786 5593 5.125900 TGATGGTTTTCTCGTCCGACTAATA 59.874 40.000 0.00 0.00 0.00 0.98
1787 5594 3.947910 TGGTTTTCTCGTCCGACTAAT 57.052 42.857 0.00 0.00 0.00 1.73
1788 5595 3.256383 TGATGGTTTTCTCGTCCGACTAA 59.744 43.478 0.00 0.00 0.00 2.24
1789 5596 2.821378 TGATGGTTTTCTCGTCCGACTA 59.179 45.455 0.00 0.00 0.00 2.59
1790 5597 1.616865 TGATGGTTTTCTCGTCCGACT 59.383 47.619 0.00 0.00 0.00 4.18
1791 5598 2.074547 TGATGGTTTTCTCGTCCGAC 57.925 50.000 0.00 0.00 0.00 4.79
1792 5599 3.732774 CGTATGATGGTTTTCTCGTCCGA 60.733 47.826 0.00 0.00 0.00 4.55
1793 5600 2.534349 CGTATGATGGTTTTCTCGTCCG 59.466 50.000 0.00 0.00 0.00 4.79
1794 5601 2.284417 GCGTATGATGGTTTTCTCGTCC 59.716 50.000 0.00 0.00 0.00 4.79
1795 5602 2.927477 TGCGTATGATGGTTTTCTCGTC 59.073 45.455 0.00 0.00 0.00 4.20
1796 5603 2.930040 CTGCGTATGATGGTTTTCTCGT 59.070 45.455 0.00 0.00 0.00 4.18
1797 5604 3.186909 TCTGCGTATGATGGTTTTCTCG 58.813 45.455 0.00 0.00 0.00 4.04
1798 5605 3.001736 GCTCTGCGTATGATGGTTTTCTC 59.998 47.826 0.00 0.00 0.00 2.87
1799 5606 2.939103 GCTCTGCGTATGATGGTTTTCT 59.061 45.455 0.00 0.00 0.00 2.52
1800 5607 2.677836 TGCTCTGCGTATGATGGTTTTC 59.322 45.455 0.00 0.00 0.00 2.29
1801 5608 2.679837 CTGCTCTGCGTATGATGGTTTT 59.320 45.455 0.00 0.00 0.00 2.43
1802 5609 2.283298 CTGCTCTGCGTATGATGGTTT 58.717 47.619 0.00 0.00 0.00 3.27
1803 5610 1.208052 ACTGCTCTGCGTATGATGGTT 59.792 47.619 0.00 0.00 0.00 3.67
1804 5611 0.826715 ACTGCTCTGCGTATGATGGT 59.173 50.000 0.00 0.00 0.00 3.55
1805 5612 1.945387 AACTGCTCTGCGTATGATGG 58.055 50.000 0.00 0.00 0.00 3.51
1806 5613 2.034254 CGAAACTGCTCTGCGTATGATG 60.034 50.000 0.00 0.00 0.00 3.07
1807 5614 2.196749 CGAAACTGCTCTGCGTATGAT 58.803 47.619 0.00 0.00 0.00 2.45
1808 5615 1.067846 ACGAAACTGCTCTGCGTATGA 60.068 47.619 0.00 0.00 32.94 2.15
1809 5616 1.350193 ACGAAACTGCTCTGCGTATG 58.650 50.000 0.00 0.00 32.94 2.39
1810 5617 2.080286 AACGAAACTGCTCTGCGTAT 57.920 45.000 0.00 0.00 34.46 3.06
1811 5618 2.710220 TAACGAAACTGCTCTGCGTA 57.290 45.000 0.00 0.00 34.46 4.42
1812 5619 2.080286 ATAACGAAACTGCTCTGCGT 57.920 45.000 0.00 0.00 36.68 5.24
1813 5620 3.120683 TCAAATAACGAAACTGCTCTGCG 60.121 43.478 0.00 0.00 0.00 5.18
1814 5621 4.404507 TCAAATAACGAAACTGCTCTGC 57.595 40.909 0.00 0.00 0.00 4.26
1815 5622 6.414408 AGATCAAATAACGAAACTGCTCTG 57.586 37.500 0.00 0.00 0.00 3.35
1816 5623 6.092807 GGAAGATCAAATAACGAAACTGCTCT 59.907 38.462 0.00 0.00 0.00 4.09
1817 5624 6.251549 GGAAGATCAAATAACGAAACTGCTC 58.748 40.000 0.00 0.00 0.00 4.26
1818 5625 5.123979 GGGAAGATCAAATAACGAAACTGCT 59.876 40.000 0.00 0.00 0.00 4.24
1819 5626 5.123979 AGGGAAGATCAAATAACGAAACTGC 59.876 40.000 0.00 0.00 0.00 4.40
1820 5627 6.595716 AGAGGGAAGATCAAATAACGAAACTG 59.404 38.462 0.00 0.00 0.00 3.16
1821 5628 6.712276 AGAGGGAAGATCAAATAACGAAACT 58.288 36.000 0.00 0.00 0.00 2.66
1822 5629 6.986904 AGAGGGAAGATCAAATAACGAAAC 57.013 37.500 0.00 0.00 0.00 2.78
1823 5630 8.537016 TCTTAGAGGGAAGATCAAATAACGAAA 58.463 33.333 0.00 0.00 30.36 3.46
1824 5631 8.074613 TCTTAGAGGGAAGATCAAATAACGAA 57.925 34.615 0.00 0.00 30.36 3.85
1825 5632 7.655521 TCTTAGAGGGAAGATCAAATAACGA 57.344 36.000 0.00 0.00 30.36 3.85
1826 5633 7.764443 TGTTCTTAGAGGGAAGATCAAATAACG 59.236 37.037 0.00 0.00 35.41 3.18
1827 5634 9.449719 TTGTTCTTAGAGGGAAGATCAAATAAC 57.550 33.333 0.00 0.00 40.03 1.89
1963 5776 7.899973 ACTGCATGATTGAAAAGAAATAGGTT 58.100 30.769 0.00 0.00 0.00 3.50
2034 5847 4.268359 CCTAGGTAGTCGTCACTAGGTTT 58.732 47.826 0.00 0.00 44.76 3.27
2042 5855 2.895404 AGTTTTGCCTAGGTAGTCGTCA 59.105 45.455 11.31 0.00 0.00 4.35
2043 5856 3.589495 AGTTTTGCCTAGGTAGTCGTC 57.411 47.619 11.31 0.00 0.00 4.20
2112 5925 2.421073 CAGTTGATGTACTGGCACCATG 59.579 50.000 0.00 0.00 41.43 3.66
2115 5928 0.804989 GCAGTTGATGTACTGGCACC 59.195 55.000 5.97 0.00 44.50 5.01
2116 5929 1.466167 CAGCAGTTGATGTACTGGCAC 59.534 52.381 5.97 0.00 44.50 5.01
2123 5936 3.623848 AACGGCAGCAGTTGATGTA 57.376 47.368 10.40 0.00 33.30 2.29
2135 5948 0.883153 TACGCTACTCTTCAACGGCA 59.117 50.000 0.00 0.00 0.00 5.69
2177 5990 8.318876 GTCGTAGTTCATGTACATTTGTGTATC 58.681 37.037 5.37 0.00 0.00 2.24
2184 5997 8.136165 GGATCTAGTCGTAGTTCATGTACATTT 58.864 37.037 5.37 0.00 29.57 2.32
2187 6000 5.235831 CGGATCTAGTCGTAGTTCATGTACA 59.764 44.000 0.00 0.00 29.57 2.90
2191 6004 4.611807 GCTCGGATCTAGTCGTAGTTCATG 60.612 50.000 0.00 0.00 29.57 3.07
2204 6017 2.115427 TGGTGGATTTGCTCGGATCTA 58.885 47.619 0.00 0.00 0.00 1.98
2214 6027 4.588899 TGGATCTGTACTTGGTGGATTTG 58.411 43.478 0.00 0.00 0.00 2.32
2223 6036 5.934043 TGTGTCTTTGATGGATCTGTACTTG 59.066 40.000 0.00 0.00 0.00 3.16
2257 6070 0.454600 GTCTAGCATCGTCGGTGGAA 59.545 55.000 7.76 0.00 0.00 3.53
2292 6105 1.758906 GGTTCTCCTCGCCTAGCCT 60.759 63.158 0.00 0.00 0.00 4.58
2303 6116 8.753497 AAACTTATGATGGAATAAGGTTCTCC 57.247 34.615 8.40 0.00 43.42 3.71
2408 6221 7.562088 AGTTCCTTCTAAGTAATACAGCTAGCT 59.438 37.037 12.68 12.68 0.00 3.32
2414 6227 9.666626 CGATGTAGTTCCTTCTAAGTAATACAG 57.333 37.037 0.00 0.00 29.39 2.74
2416 6229 9.662545 GACGATGTAGTTCCTTCTAAGTAATAC 57.337 37.037 0.00 0.00 0.00 1.89
2449 6262 0.682852 CTGGGTTGTCTGGTTCCGTA 59.317 55.000 0.00 0.00 0.00 4.02
2450 6263 1.052124 TCTGGGTTGTCTGGTTCCGT 61.052 55.000 0.00 0.00 0.00 4.69
2451 6264 0.320771 CTCTGGGTTGTCTGGTTCCG 60.321 60.000 0.00 0.00 0.00 4.30
2452 6265 0.036875 CCTCTGGGTTGTCTGGTTCC 59.963 60.000 0.00 0.00 0.00 3.62
2453 6266 0.765510 ACCTCTGGGTTGTCTGGTTC 59.234 55.000 0.00 0.00 44.73 3.62
2454 6267 2.945718 ACCTCTGGGTTGTCTGGTT 58.054 52.632 0.00 0.00 44.73 3.67
2455 6268 4.750289 ACCTCTGGGTTGTCTGGT 57.250 55.556 0.00 0.00 44.73 4.00
2464 6277 1.185618 TGGTCAGACGAACCTCTGGG 61.186 60.000 0.00 0.00 38.62 4.45
2465 6278 0.244994 CTGGTCAGACGAACCTCTGG 59.755 60.000 0.00 0.00 38.62 3.86
2466 6279 0.389166 GCTGGTCAGACGAACCTCTG 60.389 60.000 1.65 0.00 39.35 3.35
2467 6280 0.540830 AGCTGGTCAGACGAACCTCT 60.541 55.000 1.65 0.00 37.69 3.69
2468 6281 1.174783 TAGCTGGTCAGACGAACCTC 58.825 55.000 0.00 0.00 37.69 3.85
2469 6282 1.629043 TTAGCTGGTCAGACGAACCT 58.371 50.000 0.00 0.00 37.69 3.50
2470 6283 2.450609 TTTAGCTGGTCAGACGAACC 57.549 50.000 0.00 0.00 37.31 3.62
2518 6331 4.096003 GGGGGCGCTTGTGCTAGA 62.096 66.667 7.64 0.00 36.97 2.43
2532 6345 5.134661 TGTTTTGGTTCTAGTAACAAGGGG 58.865 41.667 0.00 0.00 0.00 4.79
2565 6378 4.145756 GCGTCTTTAATTGGAAACGTTGTG 59.854 41.667 0.00 0.00 33.00 3.33
2581 6394 0.250124 TCGGTGGATGTTGCGTCTTT 60.250 50.000 0.00 0.00 0.00 2.52
2587 6400 1.003839 TGGAGTCGGTGGATGTTGC 60.004 57.895 0.00 0.00 0.00 4.17
2598 6411 0.852777 CGGCAATATTCGTGGAGTCG 59.147 55.000 0.00 0.00 0.00 4.18
2643 6456 8.352201 CGGAATGTTATGAATTTATGTGATGGT 58.648 33.333 0.00 0.00 0.00 3.55
2644 6457 8.567104 TCGGAATGTTATGAATTTATGTGATGG 58.433 33.333 0.00 0.00 0.00 3.51
2648 6461 9.398170 GGAATCGGAATGTTATGAATTTATGTG 57.602 33.333 0.00 0.00 0.00 3.21
2649 6462 8.289618 CGGAATCGGAATGTTATGAATTTATGT 58.710 33.333 0.00 0.00 0.00 2.29
2650 6463 7.271223 GCGGAATCGGAATGTTATGAATTTATG 59.729 37.037 0.00 0.00 36.79 1.90
2651 6464 7.305474 GCGGAATCGGAATGTTATGAATTTAT 58.695 34.615 0.00 0.00 36.79 1.40
2652 6465 6.293735 GGCGGAATCGGAATGTTATGAATTTA 60.294 38.462 0.00 0.00 36.79 1.40
2653 6466 5.507315 GGCGGAATCGGAATGTTATGAATTT 60.507 40.000 0.00 0.00 36.79 1.82
2654 6467 4.023193 GGCGGAATCGGAATGTTATGAATT 60.023 41.667 0.00 0.00 36.79 2.17
2655 6468 3.502211 GGCGGAATCGGAATGTTATGAAT 59.498 43.478 0.00 0.00 36.79 2.57
2656 6469 2.875933 GGCGGAATCGGAATGTTATGAA 59.124 45.455 0.00 0.00 36.79 2.57
2657 6470 2.104111 AGGCGGAATCGGAATGTTATGA 59.896 45.455 0.00 0.00 36.79 2.15
2658 6471 2.480419 GAGGCGGAATCGGAATGTTATG 59.520 50.000 0.00 0.00 36.79 1.90
2659 6472 2.368875 AGAGGCGGAATCGGAATGTTAT 59.631 45.455 0.00 0.00 36.79 1.89
2660 6473 1.760613 AGAGGCGGAATCGGAATGTTA 59.239 47.619 0.00 0.00 36.79 2.41
2661 6474 0.541863 AGAGGCGGAATCGGAATGTT 59.458 50.000 0.00 0.00 36.79 2.71
2662 6475 1.068741 GTAGAGGCGGAATCGGAATGT 59.931 52.381 0.00 0.00 36.79 2.71
2663 6476 1.341531 AGTAGAGGCGGAATCGGAATG 59.658 52.381 0.00 0.00 36.79 2.67
2664 6477 1.614413 GAGTAGAGGCGGAATCGGAAT 59.386 52.381 0.00 0.00 36.79 3.01
2665 6478 1.030457 GAGTAGAGGCGGAATCGGAA 58.970 55.000 0.00 0.00 36.79 4.30
2666 6479 1.164662 CGAGTAGAGGCGGAATCGGA 61.165 60.000 0.00 0.00 36.79 4.55
2667 6480 1.164662 TCGAGTAGAGGCGGAATCGG 61.165 60.000 6.40 0.00 36.79 4.18
2668 6481 0.875728 ATCGAGTAGAGGCGGAATCG 59.124 55.000 0.00 0.85 39.81 3.34
2669 6482 5.448904 GGTTATATCGAGTAGAGGCGGAATC 60.449 48.000 0.00 0.00 0.00 2.52
2670 6483 4.398673 GGTTATATCGAGTAGAGGCGGAAT 59.601 45.833 0.00 0.00 0.00 3.01
2671 6484 3.755378 GGTTATATCGAGTAGAGGCGGAA 59.245 47.826 0.00 0.00 0.00 4.30
2672 6485 3.341823 GGTTATATCGAGTAGAGGCGGA 58.658 50.000 0.00 0.00 0.00 5.54
2673 6486 2.422832 GGGTTATATCGAGTAGAGGCGG 59.577 54.545 0.00 0.00 0.00 6.13
2674 6487 3.345414 AGGGTTATATCGAGTAGAGGCG 58.655 50.000 0.00 0.00 0.00 5.52
2675 6488 4.883006 CCTAGGGTTATATCGAGTAGAGGC 59.117 50.000 0.00 0.00 0.00 4.70
2676 6489 5.191323 TCCCTAGGGTTATATCGAGTAGAGG 59.809 48.000 27.58 0.00 36.47 3.69
2677 6490 6.070078 ACTCCCTAGGGTTATATCGAGTAGAG 60.070 46.154 27.58 14.00 36.47 2.43
2678 6491 5.789575 ACTCCCTAGGGTTATATCGAGTAGA 59.210 44.000 27.58 1.64 36.47 2.59
2679 6492 6.064735 ACTCCCTAGGGTTATATCGAGTAG 57.935 45.833 27.58 14.62 36.47 2.57
2680 6493 6.460103 AACTCCCTAGGGTTATATCGAGTA 57.540 41.667 27.58 2.32 36.47 2.59
2681 6494 5.336491 AACTCCCTAGGGTTATATCGAGT 57.664 43.478 27.58 17.24 36.47 4.18
2682 6495 5.567025 GCAAACTCCCTAGGGTTATATCGAG 60.567 48.000 27.58 16.57 36.47 4.04
2683 6496 4.282703 GCAAACTCCCTAGGGTTATATCGA 59.717 45.833 27.58 4.46 36.47 3.59
2684 6497 4.039973 TGCAAACTCCCTAGGGTTATATCG 59.960 45.833 27.58 12.01 36.47 2.92
2685 6498 5.562298 TGCAAACTCCCTAGGGTTATATC 57.438 43.478 27.58 13.95 36.47 1.63
2686 6499 5.987019 TTGCAAACTCCCTAGGGTTATAT 57.013 39.130 27.58 8.73 36.47 0.86
2687 6500 5.782677 TTTGCAAACTCCCTAGGGTTATA 57.217 39.130 27.58 7.26 36.47 0.98
2688 6501 4.668138 TTTGCAAACTCCCTAGGGTTAT 57.332 40.909 27.58 11.35 36.47 1.89
2689 6502 4.668138 ATTTGCAAACTCCCTAGGGTTA 57.332 40.909 27.58 8.47 36.47 2.85
2690 6503 3.542969 ATTTGCAAACTCCCTAGGGTT 57.457 42.857 27.58 12.87 36.47 4.11
2691 6504 3.332485 TGTATTTGCAAACTCCCTAGGGT 59.668 43.478 27.58 6.38 36.47 4.34
2692 6505 3.963129 TGTATTTGCAAACTCCCTAGGG 58.037 45.455 23.22 23.22 0.00 3.53
2693 6506 4.142381 GCTTGTATTTGCAAACTCCCTAGG 60.142 45.833 15.41 0.06 0.00 3.02
2694 6507 4.142381 GGCTTGTATTTGCAAACTCCCTAG 60.142 45.833 15.41 9.56 0.00 3.02
2695 6508 3.761752 GGCTTGTATTTGCAAACTCCCTA 59.238 43.478 15.41 0.00 0.00 3.53
2696 6509 2.562738 GGCTTGTATTTGCAAACTCCCT 59.437 45.455 15.41 0.10 0.00 4.20
2697 6510 2.353704 GGGCTTGTATTTGCAAACTCCC 60.354 50.000 15.41 13.88 0.00 4.30
2698 6511 2.298729 TGGGCTTGTATTTGCAAACTCC 59.701 45.455 15.41 8.99 0.00 3.85
2699 6512 3.658757 TGGGCTTGTATTTGCAAACTC 57.341 42.857 15.41 10.94 0.00 3.01
2700 6513 3.577848 TGATGGGCTTGTATTTGCAAACT 59.422 39.130 15.41 6.68 0.00 2.66
2701 6514 3.679502 GTGATGGGCTTGTATTTGCAAAC 59.320 43.478 15.41 3.90 0.00 2.93
2702 6515 3.613671 CGTGATGGGCTTGTATTTGCAAA 60.614 43.478 15.44 15.44 0.00 3.68
2703 6516 2.094803 CGTGATGGGCTTGTATTTGCAA 60.095 45.455 0.00 0.00 0.00 4.08
2704 6517 1.472082 CGTGATGGGCTTGTATTTGCA 59.528 47.619 0.00 0.00 0.00 4.08
2705 6518 1.798813 GCGTGATGGGCTTGTATTTGC 60.799 52.381 0.00 0.00 0.00 3.68
2706 6519 1.472082 TGCGTGATGGGCTTGTATTTG 59.528 47.619 0.00 0.00 0.00 2.32
2707 6520 1.832883 TGCGTGATGGGCTTGTATTT 58.167 45.000 0.00 0.00 0.00 1.40
2708 6521 2.057137 ATGCGTGATGGGCTTGTATT 57.943 45.000 0.00 0.00 0.00 1.89
2709 6522 1.677576 CAATGCGTGATGGGCTTGTAT 59.322 47.619 0.00 0.00 0.00 2.29
2710 6523 1.093972 CAATGCGTGATGGGCTTGTA 58.906 50.000 0.00 0.00 0.00 2.41
2711 6524 1.885157 CAATGCGTGATGGGCTTGT 59.115 52.632 0.00 0.00 0.00 3.16
2712 6525 1.517694 GCAATGCGTGATGGGCTTG 60.518 57.895 0.00 0.00 0.00 4.01
2713 6526 2.713967 GGCAATGCGTGATGGGCTT 61.714 57.895 0.00 0.00 0.00 4.35
2714 6527 3.142838 GGCAATGCGTGATGGGCT 61.143 61.111 0.00 0.00 0.00 5.19
2715 6528 2.504163 TTTGGCAATGCGTGATGGGC 62.504 55.000 0.00 0.00 0.00 5.36
2716 6529 0.458889 CTTTGGCAATGCGTGATGGG 60.459 55.000 0.00 0.00 0.00 4.00
2717 6530 1.079875 GCTTTGGCAATGCGTGATGG 61.080 55.000 20.30 0.00 38.54 3.51
2718 6531 0.108992 AGCTTTGGCAATGCGTGATG 60.109 50.000 26.16 0.00 41.70 3.07
2719 6532 0.604578 AAGCTTTGGCAATGCGTGAT 59.395 45.000 26.16 14.67 41.70 3.06
2720 6533 0.039256 GAAGCTTTGGCAATGCGTGA 60.039 50.000 26.00 0.00 41.70 4.35
2721 6534 0.318869 TGAAGCTTTGGCAATGCGTG 60.319 50.000 26.00 5.95 41.70 5.34
2722 6535 0.038892 CTGAAGCTTTGGCAATGCGT 60.039 50.000 26.16 24.35 41.70 5.24
2723 6536 0.038892 ACTGAAGCTTTGGCAATGCG 60.039 50.000 26.16 17.10 41.70 4.73
2724 6537 2.229784 ACTACTGAAGCTTTGGCAATGC 59.770 45.455 25.56 25.56 41.70 3.56
2725 6538 3.503363 TGACTACTGAAGCTTTGGCAATG 59.497 43.478 0.00 4.50 41.70 2.82
2726 6539 3.754965 TGACTACTGAAGCTTTGGCAAT 58.245 40.909 0.00 0.00 41.70 3.56
2727 6540 3.207265 TGACTACTGAAGCTTTGGCAA 57.793 42.857 0.00 0.00 41.70 4.52
2728 6541 2.878406 GTTGACTACTGAAGCTTTGGCA 59.122 45.455 0.00 0.00 41.70 4.92
2729 6542 2.878406 TGTTGACTACTGAAGCTTTGGC 59.122 45.455 0.00 0.00 39.06 4.52
2730 6543 3.876914 TGTGTTGACTACTGAAGCTTTGG 59.123 43.478 0.00 0.00 0.00 3.28
2731 6544 5.468072 AGATGTGTTGACTACTGAAGCTTTG 59.532 40.000 0.00 0.00 0.00 2.77
2732 6545 5.468072 CAGATGTGTTGACTACTGAAGCTTT 59.532 40.000 0.00 0.00 31.99 3.51
2733 6546 4.993584 CAGATGTGTTGACTACTGAAGCTT 59.006 41.667 0.00 0.00 31.99 3.74
2734 6547 4.564041 CAGATGTGTTGACTACTGAAGCT 58.436 43.478 0.00 0.00 31.99 3.74
2735 6548 3.124297 GCAGATGTGTTGACTACTGAAGC 59.876 47.826 0.00 0.00 31.99 3.86
2736 6549 3.681897 GGCAGATGTGTTGACTACTGAAG 59.318 47.826 0.00 0.00 31.99 3.02
2737 6550 3.557054 GGGCAGATGTGTTGACTACTGAA 60.557 47.826 0.00 0.00 31.99 3.02
2738 6551 2.028112 GGGCAGATGTGTTGACTACTGA 60.028 50.000 0.00 0.00 31.99 3.41
2739 6552 2.350522 GGGCAGATGTGTTGACTACTG 58.649 52.381 0.00 0.00 32.81 2.74
2740 6553 1.279271 GGGGCAGATGTGTTGACTACT 59.721 52.381 0.00 0.00 0.00 2.57
2741 6554 1.003118 TGGGGCAGATGTGTTGACTAC 59.997 52.381 0.00 0.00 0.00 2.73
2742 6555 1.003118 GTGGGGCAGATGTGTTGACTA 59.997 52.381 0.00 0.00 0.00 2.59
2743 6556 0.250901 GTGGGGCAGATGTGTTGACT 60.251 55.000 0.00 0.00 0.00 3.41
2744 6557 1.577328 CGTGGGGCAGATGTGTTGAC 61.577 60.000 0.00 0.00 0.00 3.18
2745 6558 1.302431 CGTGGGGCAGATGTGTTGA 60.302 57.895 0.00 0.00 0.00 3.18
2746 6559 0.677731 ATCGTGGGGCAGATGTGTTG 60.678 55.000 0.00 0.00 0.00 3.33
2747 6560 0.392998 GATCGTGGGGCAGATGTGTT 60.393 55.000 0.00 0.00 0.00 3.32
2748 6561 1.221840 GATCGTGGGGCAGATGTGT 59.778 57.895 0.00 0.00 0.00 3.72
2749 6562 0.392863 TTGATCGTGGGGCAGATGTG 60.393 55.000 0.00 0.00 0.00 3.21
2750 6563 0.548031 ATTGATCGTGGGGCAGATGT 59.452 50.000 0.00 0.00 0.00 3.06
2751 6564 0.949397 CATTGATCGTGGGGCAGATG 59.051 55.000 0.00 0.00 0.00 2.90
2752 6565 0.548031 ACATTGATCGTGGGGCAGAT 59.452 50.000 3.37 0.00 0.00 2.90
2753 6566 1.134521 GTACATTGATCGTGGGGCAGA 60.135 52.381 3.37 0.00 0.00 4.26
2754 6567 1.134401 AGTACATTGATCGTGGGGCAG 60.134 52.381 0.00 0.00 0.00 4.85
2755 6568 0.908910 AGTACATTGATCGTGGGGCA 59.091 50.000 0.00 0.00 0.00 5.36
2756 6569 1.670811 CAAGTACATTGATCGTGGGGC 59.329 52.381 0.00 0.00 41.83 5.80
2757 6570 1.670811 GCAAGTACATTGATCGTGGGG 59.329 52.381 8.63 0.00 41.83 4.96
2758 6571 2.095853 GTGCAAGTACATTGATCGTGGG 59.904 50.000 8.63 0.00 41.83 4.61
2759 6572 3.002791 AGTGCAAGTACATTGATCGTGG 58.997 45.455 8.63 0.00 41.83 4.94
2760 6573 3.679502 TGAGTGCAAGTACATTGATCGTG 59.320 43.478 8.63 0.00 41.83 4.35
2761 6574 3.925379 TGAGTGCAAGTACATTGATCGT 58.075 40.909 8.63 0.00 41.83 3.73
2762 6575 3.242220 GCTGAGTGCAAGTACATTGATCG 60.242 47.826 8.63 0.00 41.83 3.69
2763 6576 4.270178 GCTGAGTGCAAGTACATTGATC 57.730 45.455 8.63 0.00 41.83 2.92
2776 6589 0.950116 ACTTTCTTGCTGCTGAGTGC 59.050 50.000 0.00 0.00 43.25 4.40
2777 6590 3.549625 GGAAACTTTCTTGCTGCTGAGTG 60.550 47.826 0.00 0.00 0.00 3.51
2778 6591 2.620585 GGAAACTTTCTTGCTGCTGAGT 59.379 45.455 0.00 0.00 0.00 3.41
2779 6592 2.030451 GGGAAACTTTCTTGCTGCTGAG 60.030 50.000 0.00 0.00 0.00 3.35
2780 6593 1.956477 GGGAAACTTTCTTGCTGCTGA 59.044 47.619 0.00 0.00 0.00 4.26
2781 6594 1.959282 AGGGAAACTTTCTTGCTGCTG 59.041 47.619 0.00 0.00 0.00 4.41
2782 6595 2.363359 CAAGGGAAACTTTCTTGCTGCT 59.637 45.455 0.00 0.00 37.29 4.24
2783 6596 2.101415 ACAAGGGAAACTTTCTTGCTGC 59.899 45.455 1.57 0.00 40.90 5.25
2784 6597 3.381272 TGACAAGGGAAACTTTCTTGCTG 59.619 43.478 1.57 0.00 40.90 4.41
2785 6598 3.631250 TGACAAGGGAAACTTTCTTGCT 58.369 40.909 1.57 0.00 40.90 3.91
2786 6599 4.279420 AGATGACAAGGGAAACTTTCTTGC 59.721 41.667 1.57 0.00 40.90 4.01
2787 6600 5.767168 AGAGATGACAAGGGAAACTTTCTTG 59.233 40.000 1.57 0.00 42.37 3.02
2788 6601 5.767168 CAGAGATGACAAGGGAAACTTTCTT 59.233 40.000 1.57 0.00 37.29 2.52
2789 6602 5.072329 TCAGAGATGACAAGGGAAACTTTCT 59.928 40.000 1.57 0.00 37.29 2.52
2790 6603 5.308825 TCAGAGATGACAAGGGAAACTTTC 58.691 41.667 0.00 0.00 37.29 2.62
2791 6604 5.310409 TCAGAGATGACAAGGGAAACTTT 57.690 39.130 0.00 0.00 37.29 2.66
2792 6605 4.982241 TCAGAGATGACAAGGGAAACTT 57.018 40.909 0.00 0.00 41.00 2.66
2793 6606 4.533707 TCATCAGAGATGACAAGGGAAACT 59.466 41.667 5.63 0.00 0.00 2.66
2794 6607 4.836825 TCATCAGAGATGACAAGGGAAAC 58.163 43.478 5.63 0.00 0.00 2.78
2795 6608 5.705397 ATCATCAGAGATGACAAGGGAAA 57.295 39.130 11.51 0.00 0.00 3.13
2796 6609 6.813293 TTATCATCAGAGATGACAAGGGAA 57.187 37.500 11.51 0.00 0.00 3.97
2797 6610 6.813293 TTTATCATCAGAGATGACAAGGGA 57.187 37.500 11.51 0.00 0.00 4.20
2798 6611 6.996879 ACATTTATCATCAGAGATGACAAGGG 59.003 38.462 11.51 5.86 0.00 3.95
2799 6612 8.343366 CAACATTTATCATCAGAGATGACAAGG 58.657 37.037 11.51 11.25 0.00 3.61
2800 6613 8.890718 ACAACATTTATCATCAGAGATGACAAG 58.109 33.333 11.51 0.00 0.00 3.16
2801 6614 8.797350 ACAACATTTATCATCAGAGATGACAA 57.203 30.769 11.51 4.36 0.00 3.18
2802 6615 9.538508 CTACAACATTTATCATCAGAGATGACA 57.461 33.333 11.51 0.00 0.00 3.58
2803 6616 8.494347 GCTACAACATTTATCATCAGAGATGAC 58.506 37.037 11.51 0.00 0.00 3.06
2804 6617 8.427276 AGCTACAACATTTATCATCAGAGATGA 58.573 33.333 11.65 11.65 0.00 2.92
2805 6618 8.604640 AGCTACAACATTTATCATCAGAGATG 57.395 34.615 0.62 0.62 0.00 2.90
2806 6619 7.877097 GGAGCTACAACATTTATCATCAGAGAT 59.123 37.037 0.00 0.00 0.00 2.75
2807 6620 7.070447 AGGAGCTACAACATTTATCATCAGAGA 59.930 37.037 0.00 0.00 0.00 3.10
2808 6621 7.171167 CAGGAGCTACAACATTTATCATCAGAG 59.829 40.741 0.00 0.00 0.00 3.35
2809 6622 6.988580 CAGGAGCTACAACATTTATCATCAGA 59.011 38.462 0.00 0.00 0.00 3.27
2810 6623 6.293298 GCAGGAGCTACAACATTTATCATCAG 60.293 42.308 0.00 0.00 37.91 2.90
2811 6624 5.528690 GCAGGAGCTACAACATTTATCATCA 59.471 40.000 0.00 0.00 37.91 3.07
2812 6625 5.995055 GCAGGAGCTACAACATTTATCATC 58.005 41.667 0.00 0.00 37.91 2.92
2828 6641 0.179097 CTTAACGAGGGAGCAGGAGC 60.179 60.000 0.00 0.00 42.56 4.70
2829 6642 1.475403 TCTTAACGAGGGAGCAGGAG 58.525 55.000 0.00 0.00 0.00 3.69
2830 6643 1.933021 TTCTTAACGAGGGAGCAGGA 58.067 50.000 0.00 0.00 0.00 3.86
2831 6644 2.762535 TTTCTTAACGAGGGAGCAGG 57.237 50.000 0.00 0.00 0.00 4.85
2849 6662 6.207691 AGTTAATGTAGATGCGGCATTTTT 57.792 33.333 17.78 8.65 34.97 1.94
2850 6663 5.835113 AGTTAATGTAGATGCGGCATTTT 57.165 34.783 17.78 11.11 34.97 1.82
2851 6664 5.835113 AAGTTAATGTAGATGCGGCATTT 57.165 34.783 17.78 14.17 34.97 2.32
2852 6665 5.835113 AAAGTTAATGTAGATGCGGCATT 57.165 34.783 17.78 9.56 36.83 3.56
2853 6666 5.835113 AAAAGTTAATGTAGATGCGGCAT 57.165 34.783 16.65 16.65 0.00 4.40
2854 6667 6.745159 TTAAAAGTTAATGTAGATGCGGCA 57.255 33.333 4.58 4.58 0.00 5.69
2855 6668 7.753580 AGTTTTAAAAGTTAATGTAGATGCGGC 59.246 33.333 0.00 0.00 0.00 6.53
2856 6669 9.061610 CAGTTTTAAAAGTTAATGTAGATGCGG 57.938 33.333 5.51 0.00 0.00 5.69
2857 6670 9.820229 TCAGTTTTAAAAGTTAATGTAGATGCG 57.180 29.630 5.51 0.00 0.00 4.73
2861 6674 9.856162 ACCCTCAGTTTTAAAAGTTAATGTAGA 57.144 29.630 5.51 0.00 0.00 2.59
2864 6677 8.573885 GCTACCCTCAGTTTTAAAAGTTAATGT 58.426 33.333 5.51 4.75 0.00 2.71
2865 6678 8.793592 AGCTACCCTCAGTTTTAAAAGTTAATG 58.206 33.333 5.51 0.00 0.00 1.90
2866 6679 8.935614 AGCTACCCTCAGTTTTAAAAGTTAAT 57.064 30.769 5.51 0.00 0.00 1.40
2867 6680 8.756486 AAGCTACCCTCAGTTTTAAAAGTTAA 57.244 30.769 5.51 0.00 0.00 2.01
2868 6681 8.756486 AAAGCTACCCTCAGTTTTAAAAGTTA 57.244 30.769 5.51 0.00 28.52 2.24
2869 6682 7.655521 AAAGCTACCCTCAGTTTTAAAAGTT 57.344 32.000 5.51 0.00 28.52 2.66
2870 6683 7.997223 ACTAAAGCTACCCTCAGTTTTAAAAGT 59.003 33.333 0.00 1.03 32.86 2.66
2871 6684 8.392372 ACTAAAGCTACCCTCAGTTTTAAAAG 57.608 34.615 0.00 0.00 32.86 2.27
2872 6685 7.446319 GGACTAAAGCTACCCTCAGTTTTAAAA 59.554 37.037 0.00 0.00 32.86 1.52
2873 6686 6.938596 GGACTAAAGCTACCCTCAGTTTTAAA 59.061 38.462 0.00 0.00 32.86 1.52
2874 6687 6.043474 TGGACTAAAGCTACCCTCAGTTTTAA 59.957 38.462 0.00 0.00 32.86 1.52
2875 6688 5.544948 TGGACTAAAGCTACCCTCAGTTTTA 59.455 40.000 0.00 0.00 32.19 1.52
2876 6689 4.349930 TGGACTAAAGCTACCCTCAGTTTT 59.650 41.667 0.00 0.00 34.02 2.43
2877 6690 3.908103 TGGACTAAAGCTACCCTCAGTTT 59.092 43.478 0.00 0.00 0.00 2.66
2878 6691 3.515901 CTGGACTAAAGCTACCCTCAGTT 59.484 47.826 0.00 0.00 0.00 3.16
2879 6692 3.100671 CTGGACTAAAGCTACCCTCAGT 58.899 50.000 0.00 0.00 0.00 3.41
2880 6693 2.432510 CCTGGACTAAAGCTACCCTCAG 59.567 54.545 0.00 0.00 0.00 3.35
2881 6694 2.225547 ACCTGGACTAAAGCTACCCTCA 60.226 50.000 0.00 0.00 0.00 3.86
2882 6695 2.431419 GACCTGGACTAAAGCTACCCTC 59.569 54.545 0.00 0.00 0.00 4.30
2883 6696 2.225547 TGACCTGGACTAAAGCTACCCT 60.226 50.000 0.00 0.00 0.00 4.34
2884 6697 2.185387 TGACCTGGACTAAAGCTACCC 58.815 52.381 0.00 0.00 0.00 3.69
2885 6698 3.197983 ACATGACCTGGACTAAAGCTACC 59.802 47.826 0.00 0.00 0.00 3.18
2886 6699 4.434520 GACATGACCTGGACTAAAGCTAC 58.565 47.826 0.00 0.00 0.00 3.58
2887 6700 3.451178 GGACATGACCTGGACTAAAGCTA 59.549 47.826 6.99 0.00 0.00 3.32
2888 6701 2.237392 GGACATGACCTGGACTAAAGCT 59.763 50.000 6.99 0.00 0.00 3.74
2889 6702 2.633488 GGACATGACCTGGACTAAAGC 58.367 52.381 6.99 0.00 0.00 3.51
2890 6703 2.840651 AGGGACATGACCTGGACTAAAG 59.159 50.000 13.95 0.00 36.85 1.85
2891 6704 2.915869 AGGGACATGACCTGGACTAAA 58.084 47.619 13.95 0.00 36.85 1.85
2892 6705 2.642171 AGGGACATGACCTGGACTAA 57.358 50.000 13.95 0.00 36.85 2.24
2899 6712 0.544357 TTCGGACAGGGACATGACCT 60.544 55.000 13.95 10.66 39.43 3.85
2900 6713 0.391263 GTTCGGACAGGGACATGACC 60.391 60.000 5.56 5.56 0.00 4.02
2901 6714 0.320374 TGTTCGGACAGGGACATGAC 59.680 55.000 0.00 0.00 0.00 3.06
2902 6715 0.320374 GTGTTCGGACAGGGACATGA 59.680 55.000 0.00 0.00 36.20 3.07
2903 6716 1.014044 CGTGTTCGGACAGGGACATG 61.014 60.000 8.72 0.00 37.86 3.21
2904 6717 1.292223 CGTGTTCGGACAGGGACAT 59.708 57.895 8.72 0.00 37.86 3.06
2905 6718 2.732016 CGTGTTCGGACAGGGACA 59.268 61.111 8.72 0.00 37.86 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.