Multiple sequence alignment - TraesCS3B01G340900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G340900 chr3B 100.000 3067 0 0 1 3067 547452505 547449439 0.000000e+00 5664.0
1 TraesCS3B01G340900 chr3B 87.624 202 24 1 67 268 343319970 343319770 1.840000e-57 233.0
2 TraesCS3B01G340900 chr3B 96.970 33 0 1 833 865 146703731 146703762 2.000000e-03 54.7
3 TraesCS3B01G340900 chr3B 100.000 28 0 0 838 865 739041127 739041100 6.000000e-03 52.8
4 TraesCS3B01G340900 chr3D 91.007 1490 87 29 906 2369 420488105 420486637 0.000000e+00 1965.0
5 TraesCS3B01G340900 chr3D 91.271 527 37 4 2546 3067 420486374 420485852 0.000000e+00 710.0
6 TraesCS3B01G340900 chr3D 85.569 589 62 9 269 840 420488680 420488098 2.040000e-166 595.0
7 TraesCS3B01G340900 chr3D 85.500 200 12 7 2356 2543 420486601 420486407 3.120000e-45 193.0
8 TraesCS3B01G340900 chr3D 96.774 31 1 0 838 868 82098788 82098758 6.000000e-03 52.8
9 TraesCS3B01G340900 chr3A 89.688 1280 68 35 896 2139 530433760 530435011 0.000000e+00 1574.0
10 TraesCS3B01G340900 chr3A 90.962 520 43 1 2547 3062 530435471 530435990 0.000000e+00 697.0
11 TraesCS3B01G340900 chr3A 85.714 196 12 6 2359 2543 530435247 530435437 3.120000e-45 193.0
12 TraesCS3B01G340900 chr3A 81.443 194 26 5 2174 2360 530435008 530435198 1.910000e-32 150.0
13 TraesCS3B01G340900 chr2A 84.615 260 40 0 1 260 765142599 765142858 3.030000e-65 259.0
14 TraesCS3B01G340900 chr2A 100.000 30 0 0 836 865 34104337 34104366 4.270000e-04 56.5
15 TraesCS3B01G340900 chr1B 89.340 197 21 0 67 263 189558511 189558707 6.570000e-62 248.0
16 TraesCS3B01G340900 chr5D 89.340 197 19 1 67 263 279233743 279233937 2.360000e-61 246.0
17 TraesCS3B01G340900 chr5D 89.340 197 18 1 67 263 294861766 294861959 8.490000e-61 244.0
18 TraesCS3B01G340900 chr5D 88.776 98 11 0 1 98 30418146 30418243 1.490000e-23 121.0
19 TraesCS3B01G340900 chr5D 88.776 98 11 0 1 98 184984311 184984408 1.490000e-23 121.0
20 TraesCS3B01G340900 chr5D 88.542 96 11 0 1 96 342865900 342865995 1.930000e-22 117.0
21 TraesCS3B01G340900 chr5D 86.735 98 11 1 1 98 294861523 294861618 1.160000e-19 108.0
22 TraesCS3B01G340900 chr4D 88.832 197 20 1 67 263 230969779 230969585 1.100000e-59 241.0
23 TraesCS3B01G340900 chr4D 86.735 98 12 1 1 98 311870193 311870097 1.160000e-19 108.0
24 TraesCS3B01G340900 chr7D 88.500 200 20 3 66 263 451101150 451101348 3.950000e-59 239.0
25 TraesCS3B01G340900 chr7D 86.735 98 13 0 1 98 222193116 222193213 3.230000e-20 110.0
26 TraesCS3B01G340900 chr6A 88.384 198 23 0 66 263 124127743 124127546 3.950000e-59 239.0
27 TraesCS3B01G340900 chr4B 88.384 198 23 0 66 263 572935533 572935730 3.950000e-59 239.0
28 TraesCS3B01G340900 chr5A 88.298 94 11 0 3 96 290134214 290134307 2.500000e-21 113.0
29 TraesCS3B01G340900 chr5A 85.185 108 13 2 684 789 502832074 502832180 1.160000e-19 108.0
30 TraesCS3B01G340900 chr7A 86.735 98 13 0 1 98 450977307 450977404 3.230000e-20 110.0
31 TraesCS3B01G340900 chr2B 94.444 36 2 0 830 865 796526621 796526586 4.270000e-04 56.5
32 TraesCS3B01G340900 chr5B 100.000 29 0 0 837 865 331307398 331307426 2.000000e-03 54.7
33 TraesCS3B01G340900 chrUn 100.000 28 0 0 838 865 226012897 226012870 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G340900 chr3B 547449439 547452505 3066 True 5664.00 5664 100.00000 1 3067 1 chr3B.!!$R2 3066
1 TraesCS3B01G340900 chr3D 420485852 420488680 2828 True 865.75 1965 88.33675 269 3067 4 chr3D.!!$R2 2798
2 TraesCS3B01G340900 chr3A 530433760 530435990 2230 False 653.50 1574 86.95175 896 3062 4 chr3A.!!$F1 2166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.030908 TCGCACGTACATCACACACA 59.969 50.0 0.00 0.00 0.00 3.72 F
263 264 0.109039 AAAACGTTTGCGCAAGGTGT 60.109 45.0 23.68 18.91 42.83 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 1417 0.250166 GTACCGTTTCCAGCACACCT 60.250 55.0 0.0 0.0 0.0 4.00 R
2114 2180 0.034337 GCCCAGACGTGTAAACTCCA 59.966 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.141488 ACACACGCGGGGCAAAAA 61.141 55.556 15.46 0.00 0.00 1.94
18 19 2.354539 CACACGCGGGGCAAAAAG 60.355 61.111 15.46 0.00 0.00 2.27
19 20 2.517402 ACACGCGGGGCAAAAAGA 60.517 55.556 15.46 0.00 0.00 2.52
20 21 2.255252 CACGCGGGGCAAAAAGAG 59.745 61.111 12.47 0.00 0.00 2.85
21 22 3.670377 ACGCGGGGCAAAAAGAGC 61.670 61.111 12.47 0.00 0.00 4.09
22 23 3.365265 CGCGGGGCAAAAAGAGCT 61.365 61.111 0.00 0.00 0.00 4.09
23 24 2.568612 GCGGGGCAAAAAGAGCTC 59.431 61.111 5.27 5.27 0.00 4.09
24 25 2.870372 CGGGGCAAAAAGAGCTCG 59.130 61.111 8.37 0.00 31.73 5.03
25 26 1.966451 CGGGGCAAAAAGAGCTCGT 60.966 57.895 8.37 1.01 31.73 4.18
26 27 1.581447 GGGGCAAAAAGAGCTCGTG 59.419 57.895 8.37 6.72 31.73 4.35
27 28 1.172812 GGGGCAAAAAGAGCTCGTGT 61.173 55.000 8.37 0.00 31.73 4.49
28 29 0.040067 GGGCAAAAAGAGCTCGTGTG 60.040 55.000 8.37 8.52 0.00 3.82
29 30 0.661483 GGCAAAAAGAGCTCGTGTGC 60.661 55.000 22.35 22.35 0.00 4.57
30 31 0.993746 GCAAAAAGAGCTCGTGTGCG 60.994 55.000 18.23 4.49 38.13 5.34
31 32 0.581529 CAAAAAGAGCTCGTGTGCGA 59.418 50.000 8.37 0.00 45.79 5.10
32 33 1.195448 CAAAAAGAGCTCGTGTGCGAT 59.805 47.619 8.37 0.00 46.80 4.58
33 34 1.071605 AAAAGAGCTCGTGTGCGATC 58.928 50.000 8.37 0.00 46.80 3.69
34 35 1.073216 AAAGAGCTCGTGTGCGATCG 61.073 55.000 11.69 11.69 46.80 3.69
35 36 2.874010 AAGAGCTCGTGTGCGATCGG 62.874 60.000 18.30 0.00 46.80 4.18
36 37 3.396911 GAGCTCGTGTGCGATCGGA 62.397 63.158 18.30 12.19 46.80 4.55
37 38 3.248171 GCTCGTGTGCGATCGGAC 61.248 66.667 30.05 30.05 46.80 4.79
38 39 2.944557 CTCGTGTGCGATCGGACG 60.945 66.667 30.38 21.55 46.80 4.79
39 40 3.376914 CTCGTGTGCGATCGGACGA 62.377 63.158 30.38 24.16 46.80 4.20
40 41 2.944557 CGTGTGCGATCGGACGAG 60.945 66.667 30.38 23.26 39.39 4.18
41 42 3.248171 GTGTGCGATCGGACGAGC 61.248 66.667 30.38 20.42 39.39 5.03
42 43 4.492160 TGTGCGATCGGACGAGCC 62.492 66.667 30.38 10.90 39.39 4.70
43 44 4.492160 GTGCGATCGGACGAGCCA 62.492 66.667 23.99 4.56 35.94 4.75
44 45 3.527427 TGCGATCGGACGAGCCAT 61.527 61.111 18.30 0.00 35.94 4.40
45 46 2.731348 GCGATCGGACGAGCCATC 60.731 66.667 18.30 0.00 35.94 3.51
46 47 2.721859 CGATCGGACGAGCCATCA 59.278 61.111 7.38 0.00 35.94 3.07
47 48 1.658717 CGATCGGACGAGCCATCAC 60.659 63.158 7.38 0.00 35.94 3.06
48 49 1.437573 GATCGGACGAGCCATCACA 59.562 57.895 0.00 0.00 35.94 3.58
49 50 0.596083 GATCGGACGAGCCATCACAG 60.596 60.000 0.00 0.00 35.94 3.66
50 51 1.037579 ATCGGACGAGCCATCACAGA 61.038 55.000 0.00 0.00 35.94 3.41
51 52 1.517257 CGGACGAGCCATCACAGAC 60.517 63.158 0.00 0.00 35.94 3.51
52 53 1.591703 GGACGAGCCATCACAGACA 59.408 57.895 0.00 0.00 36.34 3.41
53 54 0.037326 GGACGAGCCATCACAGACAA 60.037 55.000 0.00 0.00 36.34 3.18
54 55 1.406069 GGACGAGCCATCACAGACAAT 60.406 52.381 0.00 0.00 36.34 2.71
55 56 2.350522 GACGAGCCATCACAGACAATT 58.649 47.619 0.00 0.00 0.00 2.32
56 57 3.521560 GACGAGCCATCACAGACAATTA 58.478 45.455 0.00 0.00 0.00 1.40
57 58 4.122776 GACGAGCCATCACAGACAATTAT 58.877 43.478 0.00 0.00 0.00 1.28
58 59 5.276461 ACGAGCCATCACAGACAATTATA 57.724 39.130 0.00 0.00 0.00 0.98
59 60 5.050490 ACGAGCCATCACAGACAATTATAC 58.950 41.667 0.00 0.00 0.00 1.47
60 61 5.049828 CGAGCCATCACAGACAATTATACA 58.950 41.667 0.00 0.00 0.00 2.29
61 62 5.176406 CGAGCCATCACAGACAATTATACAG 59.824 44.000 0.00 0.00 0.00 2.74
62 63 5.371526 AGCCATCACAGACAATTATACAGG 58.628 41.667 0.00 0.00 0.00 4.00
63 64 4.023707 GCCATCACAGACAATTATACAGGC 60.024 45.833 0.00 0.00 0.00 4.85
64 65 4.516698 CCATCACAGACAATTATACAGGCC 59.483 45.833 0.00 0.00 0.00 5.19
65 66 4.835284 TCACAGACAATTATACAGGCCA 57.165 40.909 5.01 0.00 0.00 5.36
66 67 5.172687 TCACAGACAATTATACAGGCCAA 57.827 39.130 5.01 0.00 0.00 4.52
67 68 5.565509 TCACAGACAATTATACAGGCCAAA 58.434 37.500 5.01 0.00 0.00 3.28
68 69 6.007076 TCACAGACAATTATACAGGCCAAAA 58.993 36.000 5.01 0.00 0.00 2.44
69 70 6.072175 TCACAGACAATTATACAGGCCAAAAC 60.072 38.462 5.01 0.00 0.00 2.43
70 71 5.106317 ACAGACAATTATACAGGCCAAAACG 60.106 40.000 5.01 0.00 0.00 3.60
71 72 5.007682 AGACAATTATACAGGCCAAAACGT 58.992 37.500 5.01 0.00 0.00 3.99
72 73 5.475564 AGACAATTATACAGGCCAAAACGTT 59.524 36.000 5.01 0.00 0.00 3.99
73 74 6.015772 AGACAATTATACAGGCCAAAACGTTT 60.016 34.615 7.96 7.96 0.00 3.60
74 75 6.517605 ACAATTATACAGGCCAAAACGTTTT 58.482 32.000 20.26 20.26 0.00 2.43
75 76 6.643360 ACAATTATACAGGCCAAAACGTTTTC 59.357 34.615 22.90 12.93 0.00 2.29
93 94 2.426318 CGTTCGCACGTACATCACA 58.574 52.632 0.00 0.00 41.84 3.58
94 95 0.090676 CGTTCGCACGTACATCACAC 59.909 55.000 0.00 0.00 41.84 3.82
95 96 1.133407 GTTCGCACGTACATCACACA 58.867 50.000 0.00 0.00 0.00 3.72
96 97 1.133407 TTCGCACGTACATCACACAC 58.867 50.000 0.00 0.00 0.00 3.82
97 98 0.030908 TCGCACGTACATCACACACA 59.969 50.000 0.00 0.00 0.00 3.72
98 99 0.855995 CGCACGTACATCACACACAA 59.144 50.000 0.00 0.00 0.00 3.33
99 100 1.459209 CGCACGTACATCACACACAAT 59.541 47.619 0.00 0.00 0.00 2.71
100 101 2.096466 CGCACGTACATCACACACAATT 60.096 45.455 0.00 0.00 0.00 2.32
101 102 3.605922 CGCACGTACATCACACACAATTT 60.606 43.478 0.00 0.00 0.00 1.82
102 103 4.286910 GCACGTACATCACACACAATTTT 58.713 39.130 0.00 0.00 0.00 1.82
103 104 4.737765 GCACGTACATCACACACAATTTTT 59.262 37.500 0.00 0.00 0.00 1.94
104 105 5.108405 GCACGTACATCACACACAATTTTTC 60.108 40.000 0.00 0.00 0.00 2.29
105 106 5.398122 CACGTACATCACACACAATTTTTCC 59.602 40.000 0.00 0.00 0.00 3.13
106 107 4.915085 CGTACATCACACACAATTTTTCCC 59.085 41.667 0.00 0.00 0.00 3.97
107 108 5.506483 CGTACATCACACACAATTTTTCCCA 60.506 40.000 0.00 0.00 0.00 4.37
108 109 5.549742 ACATCACACACAATTTTTCCCAT 57.450 34.783 0.00 0.00 0.00 4.00
109 110 5.540911 ACATCACACACAATTTTTCCCATC 58.459 37.500 0.00 0.00 0.00 3.51
110 111 5.070180 ACATCACACACAATTTTTCCCATCA 59.930 36.000 0.00 0.00 0.00 3.07
111 112 5.604758 TCACACACAATTTTTCCCATCAA 57.395 34.783 0.00 0.00 0.00 2.57
112 113 5.982356 TCACACACAATTTTTCCCATCAAA 58.018 33.333 0.00 0.00 0.00 2.69
113 114 6.590068 TCACACACAATTTTTCCCATCAAAT 58.410 32.000 0.00 0.00 0.00 2.32
114 115 6.705381 TCACACACAATTTTTCCCATCAAATC 59.295 34.615 0.00 0.00 0.00 2.17
115 116 6.482641 CACACACAATTTTTCCCATCAAATCA 59.517 34.615 0.00 0.00 0.00 2.57
116 117 7.173562 CACACACAATTTTTCCCATCAAATCAT 59.826 33.333 0.00 0.00 0.00 2.45
117 118 8.373981 ACACACAATTTTTCCCATCAAATCATA 58.626 29.630 0.00 0.00 0.00 2.15
118 119 9.386010 CACACAATTTTTCCCATCAAATCATAT 57.614 29.630 0.00 0.00 0.00 1.78
119 120 9.386010 ACACAATTTTTCCCATCAAATCATATG 57.614 29.630 0.00 0.00 0.00 1.78
120 121 9.386010 CACAATTTTTCCCATCAAATCATATGT 57.614 29.630 1.90 0.00 0.00 2.29
121 122 9.386010 ACAATTTTTCCCATCAAATCATATGTG 57.614 29.630 1.90 0.00 0.00 3.21
122 123 9.602568 CAATTTTTCCCATCAAATCATATGTGA 57.397 29.630 1.90 0.00 39.04 3.58
126 127 7.692460 TTCCCATCAAATCATATGTGATAGC 57.308 36.000 5.27 0.00 44.20 2.97
127 128 5.876460 TCCCATCAAATCATATGTGATAGCG 59.124 40.000 5.27 0.00 44.20 4.26
128 129 5.645067 CCCATCAAATCATATGTGATAGCGT 59.355 40.000 5.27 0.00 44.20 5.07
129 130 6.149973 CCCATCAAATCATATGTGATAGCGTT 59.850 38.462 5.27 0.00 44.20 4.84
130 131 7.019418 CCATCAAATCATATGTGATAGCGTTG 58.981 38.462 5.27 6.79 44.20 4.10
131 132 5.989249 TCAAATCATATGTGATAGCGTTGC 58.011 37.500 5.27 0.00 44.20 4.17
132 133 5.049474 TCAAATCATATGTGATAGCGTTGCC 60.049 40.000 5.27 0.00 44.20 4.52
133 134 3.467374 TCATATGTGATAGCGTTGCCA 57.533 42.857 1.90 0.00 0.00 4.92
134 135 4.006780 TCATATGTGATAGCGTTGCCAT 57.993 40.909 1.90 0.00 0.00 4.40
135 136 4.388485 TCATATGTGATAGCGTTGCCATT 58.612 39.130 1.90 0.00 0.00 3.16
136 137 4.452114 TCATATGTGATAGCGTTGCCATTC 59.548 41.667 1.90 0.00 0.00 2.67
137 138 1.378531 TGTGATAGCGTTGCCATTCC 58.621 50.000 0.00 0.00 0.00 3.01
138 139 1.339535 TGTGATAGCGTTGCCATTCCA 60.340 47.619 0.00 0.00 0.00 3.53
139 140 1.331756 GTGATAGCGTTGCCATTCCAG 59.668 52.381 0.00 0.00 0.00 3.86
140 141 1.209261 TGATAGCGTTGCCATTCCAGA 59.791 47.619 0.00 0.00 0.00 3.86
141 142 1.599542 GATAGCGTTGCCATTCCAGAC 59.400 52.381 0.00 0.00 0.00 3.51
142 143 0.739462 TAGCGTTGCCATTCCAGACG 60.739 55.000 0.00 0.00 36.85 4.18
143 144 2.032634 GCGTTGCCATTCCAGACGA 61.033 57.895 0.00 0.00 35.90 4.20
144 145 1.369091 GCGTTGCCATTCCAGACGAT 61.369 55.000 0.00 0.00 35.90 3.73
145 146 1.934589 CGTTGCCATTCCAGACGATA 58.065 50.000 0.00 0.00 35.90 2.92
146 147 2.483876 CGTTGCCATTCCAGACGATAT 58.516 47.619 0.00 0.00 35.90 1.63
147 148 2.872245 CGTTGCCATTCCAGACGATATT 59.128 45.455 0.00 0.00 35.90 1.28
148 149 4.055360 CGTTGCCATTCCAGACGATATTA 58.945 43.478 0.00 0.00 35.90 0.98
149 150 4.509970 CGTTGCCATTCCAGACGATATTAA 59.490 41.667 0.00 0.00 35.90 1.40
150 151 5.179368 CGTTGCCATTCCAGACGATATTAAT 59.821 40.000 0.00 0.00 35.90 1.40
151 152 6.367695 CGTTGCCATTCCAGACGATATTAATA 59.632 38.462 0.00 0.00 35.90 0.98
152 153 7.411912 CGTTGCCATTCCAGACGATATTAATAG 60.412 40.741 1.02 0.00 35.90 1.73
153 154 7.004555 TGCCATTCCAGACGATATTAATAGT 57.995 36.000 1.02 0.00 0.00 2.12
154 155 7.450074 TGCCATTCCAGACGATATTAATAGTT 58.550 34.615 1.02 0.00 0.00 2.24
155 156 7.936847 TGCCATTCCAGACGATATTAATAGTTT 59.063 33.333 1.02 0.00 0.00 2.66
156 157 8.784043 GCCATTCCAGACGATATTAATAGTTTT 58.216 33.333 1.02 0.00 0.00 2.43
177 178 9.730420 AGTTTTATCGTTGGTATTATTGAATGC 57.270 29.630 0.00 0.00 0.00 3.56
178 179 9.509855 GTTTTATCGTTGGTATTATTGAATGCA 57.490 29.630 0.00 0.00 29.78 3.96
180 181 9.891828 TTTATCGTTGGTATTATTGAATGCATC 57.108 29.630 0.00 0.00 29.78 3.91
181 182 6.934048 TCGTTGGTATTATTGAATGCATCA 57.066 33.333 0.00 0.00 35.85 3.07
182 183 6.724263 TCGTTGGTATTATTGAATGCATCAC 58.276 36.000 0.00 0.00 37.92 3.06
183 184 5.620822 CGTTGGTATTATTGAATGCATCACG 59.379 40.000 0.00 0.00 37.92 4.35
184 185 5.107109 TGGTATTATTGAATGCATCACGC 57.893 39.130 0.00 0.00 37.92 5.34
194 195 2.125713 CATCACGCACGGTGCCTA 60.126 61.111 26.00 12.68 46.56 3.93
195 196 2.167219 CATCACGCACGGTGCCTAG 61.167 63.158 26.00 15.25 46.56 3.02
196 197 2.348104 ATCACGCACGGTGCCTAGA 61.348 57.895 26.00 20.31 46.56 2.43
197 198 1.884075 ATCACGCACGGTGCCTAGAA 61.884 55.000 26.00 8.87 46.56 2.10
198 199 2.094659 CACGCACGGTGCCTAGAAG 61.095 63.158 26.00 13.84 41.12 2.85
199 200 2.273179 ACGCACGGTGCCTAGAAGA 61.273 57.895 26.00 0.00 41.12 2.87
200 201 1.080093 CGCACGGTGCCTAGAAGAA 60.080 57.895 26.00 0.00 41.12 2.52
201 202 0.669318 CGCACGGTGCCTAGAAGAAA 60.669 55.000 26.00 0.00 41.12 2.52
202 203 0.796927 GCACGGTGCCTAGAAGAAAC 59.203 55.000 22.19 0.00 37.42 2.78
203 204 1.876416 GCACGGTGCCTAGAAGAAACA 60.876 52.381 22.19 0.00 37.42 2.83
204 205 2.489971 CACGGTGCCTAGAAGAAACAA 58.510 47.619 0.00 0.00 0.00 2.83
205 206 3.074412 CACGGTGCCTAGAAGAAACAAT 58.926 45.455 0.00 0.00 0.00 2.71
206 207 3.074412 ACGGTGCCTAGAAGAAACAATG 58.926 45.455 0.00 0.00 0.00 2.82
207 208 3.074412 CGGTGCCTAGAAGAAACAATGT 58.926 45.455 0.00 0.00 0.00 2.71
208 209 3.120199 CGGTGCCTAGAAGAAACAATGTG 60.120 47.826 0.00 0.00 0.00 3.21
209 210 3.191371 GGTGCCTAGAAGAAACAATGTGG 59.809 47.826 0.00 0.00 0.00 4.17
210 211 2.819608 TGCCTAGAAGAAACAATGTGGC 59.180 45.455 0.00 0.83 38.42 5.01
211 212 2.819608 GCCTAGAAGAAACAATGTGGCA 59.180 45.455 2.76 0.00 37.91 4.92
212 213 3.445096 GCCTAGAAGAAACAATGTGGCAT 59.555 43.478 2.76 0.00 37.91 4.40
213 214 4.640201 GCCTAGAAGAAACAATGTGGCATA 59.360 41.667 2.76 0.00 37.91 3.14
214 215 5.220931 GCCTAGAAGAAACAATGTGGCATAG 60.221 44.000 2.76 0.00 37.91 2.23
215 216 5.297776 CCTAGAAGAAACAATGTGGCATAGG 59.702 44.000 0.00 0.00 0.00 2.57
216 217 4.666512 AGAAGAAACAATGTGGCATAGGT 58.333 39.130 0.00 0.00 0.00 3.08
217 218 5.079643 AGAAGAAACAATGTGGCATAGGTT 58.920 37.500 0.00 0.00 0.00 3.50
218 219 4.789012 AGAAACAATGTGGCATAGGTTG 57.211 40.909 5.15 1.29 0.00 3.77
219 220 4.151883 AGAAACAATGTGGCATAGGTTGT 58.848 39.130 5.15 1.86 34.74 3.32
220 221 4.218417 AGAAACAATGTGGCATAGGTTGTC 59.782 41.667 4.08 5.30 32.32 3.18
221 222 2.446435 ACAATGTGGCATAGGTTGTCC 58.554 47.619 0.00 0.00 0.00 4.02
222 223 2.224992 ACAATGTGGCATAGGTTGTCCA 60.225 45.455 0.00 0.00 35.89 4.02
223 224 3.025978 CAATGTGGCATAGGTTGTCCAT 58.974 45.455 0.00 0.00 35.11 3.41
224 225 2.418368 TGTGGCATAGGTTGTCCATC 57.582 50.000 0.00 0.00 35.11 3.51
225 226 1.632920 TGTGGCATAGGTTGTCCATCA 59.367 47.619 0.00 0.00 35.11 3.07
226 227 2.017049 GTGGCATAGGTTGTCCATCAC 58.983 52.381 0.00 0.00 35.11 3.06
227 228 1.632920 TGGCATAGGTTGTCCATCACA 59.367 47.619 0.00 0.00 35.89 3.58
228 229 2.017049 GGCATAGGTTGTCCATCACAC 58.983 52.381 0.00 0.00 33.41 3.82
229 230 2.617788 GGCATAGGTTGTCCATCACACA 60.618 50.000 0.00 0.00 33.41 3.72
230 231 3.081061 GCATAGGTTGTCCATCACACAA 58.919 45.455 0.00 0.00 33.41 3.33
231 232 3.505680 GCATAGGTTGTCCATCACACAAA 59.494 43.478 0.00 0.00 35.53 2.83
232 233 4.615912 GCATAGGTTGTCCATCACACAAAC 60.616 45.833 0.00 0.00 41.10 2.93
233 234 3.297134 AGGTTGTCCATCACACAAACT 57.703 42.857 0.00 0.00 45.21 2.66
235 236 4.385358 GGTTGTCCATCACACAAACTTT 57.615 40.909 0.00 0.00 38.27 2.66
236 237 4.754322 GGTTGTCCATCACACAAACTTTT 58.246 39.130 0.00 0.00 38.27 2.27
237 238 5.175127 GGTTGTCCATCACACAAACTTTTT 58.825 37.500 0.00 0.00 38.27 1.94
238 239 6.334202 GGTTGTCCATCACACAAACTTTTTA 58.666 36.000 0.00 0.00 38.27 1.52
239 240 6.983890 GGTTGTCCATCACACAAACTTTTTAT 59.016 34.615 0.00 0.00 38.27 1.40
240 241 7.042791 GGTTGTCCATCACACAAACTTTTTATG 60.043 37.037 0.00 0.00 38.27 1.90
241 242 7.106439 TGTCCATCACACAAACTTTTTATGT 57.894 32.000 0.00 0.00 0.00 2.29
242 243 7.551585 TGTCCATCACACAAACTTTTTATGTT 58.448 30.769 0.00 0.00 0.00 2.71
243 244 7.490725 TGTCCATCACACAAACTTTTTATGTTG 59.509 33.333 0.00 0.00 0.00 3.33
244 245 7.704472 GTCCATCACACAAACTTTTTATGTTGA 59.296 33.333 0.00 0.00 0.00 3.18
245 246 8.253810 TCCATCACACAAACTTTTTATGTTGAA 58.746 29.630 0.00 0.00 0.00 2.69
246 247 8.877779 CCATCACACAAACTTTTTATGTTGAAA 58.122 29.630 0.00 0.00 0.00 2.69
259 260 2.330034 GTTGAAAACGTTTGCGCAAG 57.670 45.000 23.68 15.27 42.83 4.01
260 261 1.006494 GTTGAAAACGTTTGCGCAAGG 60.006 47.619 23.68 20.54 42.83 3.61
261 262 0.171455 TGAAAACGTTTGCGCAAGGT 59.829 45.000 23.68 21.20 42.83 3.50
262 263 0.570272 GAAAACGTTTGCGCAAGGTG 59.430 50.000 23.68 18.27 42.83 4.00
263 264 0.109039 AAAACGTTTGCGCAAGGTGT 60.109 45.000 23.68 18.91 42.83 4.16
264 265 0.109039 AAACGTTTGCGCAAGGTGTT 60.109 45.000 23.68 23.12 42.83 3.32
265 266 0.524604 AACGTTTGCGCAAGGTGTTC 60.525 50.000 23.68 9.61 42.83 3.18
266 267 1.355210 CGTTTGCGCAAGGTGTTCT 59.645 52.632 23.68 0.00 38.28 3.01
267 268 0.584396 CGTTTGCGCAAGGTGTTCTA 59.416 50.000 23.68 2.43 38.28 2.10
277 278 4.176271 GCAAGGTGTTCTATTGATTTGCC 58.824 43.478 0.00 0.00 35.03 4.52
315 316 8.213518 TGTTATCTATCAATTCAAGACCTTGC 57.786 34.615 4.94 0.00 40.24 4.01
323 324 3.795688 TTCAAGACCTTGCTCTCCATT 57.204 42.857 4.94 0.00 40.24 3.16
328 329 2.093235 AGACCTTGCTCTCCATTGCTAC 60.093 50.000 0.00 0.00 0.00 3.58
338 339 5.300286 GCTCTCCATTGCTACCAATTACAAT 59.700 40.000 0.00 0.00 39.60 2.71
365 366 8.338259 CAATTGTATATGAAGAACTAGGTGTGC 58.662 37.037 0.00 0.00 0.00 4.57
370 371 4.558226 TGAAGAACTAGGTGTGCATGAT 57.442 40.909 0.00 0.00 0.00 2.45
373 374 4.833478 AGAACTAGGTGTGCATGATCTT 57.167 40.909 0.00 0.00 0.00 2.40
400 401 1.272425 CCTCTTGTGGCCACCCAAATA 60.272 52.381 32.62 10.60 44.33 1.40
409 410 1.037030 CCACCCAAATATGCGCCAGT 61.037 55.000 4.18 0.00 0.00 4.00
412 413 0.947244 CCCAAATATGCGCCAGTCTC 59.053 55.000 4.18 0.00 0.00 3.36
438 439 2.474266 CGCCATTGACAACGTCGG 59.526 61.111 0.00 0.00 34.95 4.79
448 449 0.600255 ACAACGTCGGCTCCAAGAAG 60.600 55.000 0.00 0.00 0.00 2.85
453 454 0.319641 GTCGGCTCCAAGAAGTCGTT 60.320 55.000 0.00 0.00 44.49 3.85
457 458 0.784778 GCTCCAAGAAGTCGTTGTCG 59.215 55.000 0.00 0.00 38.55 4.35
460 461 0.776451 CCAAGAAGTCGTTGTCGTCG 59.224 55.000 0.00 0.00 38.33 5.12
461 462 1.474017 CAAGAAGTCGTTGTCGTCGT 58.526 50.000 0.00 0.00 38.33 4.34
462 463 1.447201 CAAGAAGTCGTTGTCGTCGTC 59.553 52.381 0.00 0.00 38.33 4.20
464 465 0.655626 GAAGTCGTTGTCGTCGTCGT 60.656 55.000 1.33 0.00 38.33 4.34
465 466 0.655626 AAGTCGTTGTCGTCGTCGTC 60.656 55.000 1.33 0.00 38.33 4.20
467 468 3.798776 CGTTGTCGTCGTCGTCGC 61.799 66.667 7.01 3.63 38.33 5.19
468 469 3.456039 GTTGTCGTCGTCGTCGCC 61.456 66.667 7.01 0.00 38.33 5.54
469 470 3.951464 TTGTCGTCGTCGTCGCCA 61.951 61.111 7.01 0.00 38.33 5.69
470 471 3.466780 TTGTCGTCGTCGTCGCCAA 62.467 57.895 4.36 4.36 38.33 4.52
471 472 2.726912 GTCGTCGTCGTCGCCAAA 60.727 61.111 7.01 0.00 38.33 3.28
472 473 2.427905 TCGTCGTCGTCGCCAAAG 60.428 61.111 7.01 0.00 38.33 2.77
473 474 4.117372 CGTCGTCGTCGCCAAAGC 62.117 66.667 0.00 0.00 36.96 3.51
498 499 4.466370 AGCATAACTAGAGTAACAGCCACA 59.534 41.667 0.00 0.00 0.00 4.17
516 517 1.006043 ACAGTCGATTCCTCCTCCTGA 59.994 52.381 0.00 0.00 0.00 3.86
521 522 0.602372 GATTCCTCCTCCTGATGCGC 60.602 60.000 0.00 0.00 0.00 6.09
530 531 0.613260 TCCTGATGCGCTACCAAACT 59.387 50.000 9.73 0.00 0.00 2.66
531 532 1.009829 CCTGATGCGCTACCAAACTC 58.990 55.000 9.73 0.00 0.00 3.01
532 533 0.647410 CTGATGCGCTACCAAACTCG 59.353 55.000 9.73 0.00 0.00 4.18
545 546 2.299297 CCAAACTCGTGAGGGTCTAAGT 59.701 50.000 1.43 0.00 46.10 2.24
552 553 3.576982 TCGTGAGGGTCTAAGTTGTCATT 59.423 43.478 0.00 0.00 0.00 2.57
554 555 4.642429 GTGAGGGTCTAAGTTGTCATTGT 58.358 43.478 0.00 0.00 0.00 2.71
555 556 5.063880 GTGAGGGTCTAAGTTGTCATTGTT 58.936 41.667 0.00 0.00 0.00 2.83
560 576 2.811431 TCTAAGTTGTCATTGTTGCCCG 59.189 45.455 0.00 0.00 0.00 6.13
568 584 0.888736 CATTGTTGCCCGGAGTCACA 60.889 55.000 0.73 0.00 0.00 3.58
579 596 0.749454 GGAGTCACATCCACCATGCC 60.749 60.000 0.00 0.00 39.34 4.40
600 617 2.358247 GAGCCGCGGGAGAAACAA 60.358 61.111 29.38 0.00 0.00 2.83
601 618 2.668550 AGCCGCGGGAGAAACAAC 60.669 61.111 29.38 6.37 0.00 3.32
631 648 0.924823 TAGGGTTAGAGGAGCGGTCT 59.075 55.000 15.18 0.05 0.00 3.85
646 663 1.150536 GTCTGACCCAGCCAAACCA 59.849 57.895 0.00 0.00 0.00 3.67
652 669 1.978617 CCCAGCCAAACCAAGCGAT 60.979 57.895 0.00 0.00 0.00 4.58
656 673 1.021390 AGCCAAACCAAGCGATCGAG 61.021 55.000 21.57 7.50 0.00 4.04
657 674 1.019278 GCCAAACCAAGCGATCGAGA 61.019 55.000 21.57 0.00 0.00 4.04
671 688 3.304123 CGATCGAGATGGACTTGTCCTAC 60.304 52.174 19.11 12.99 0.00 3.18
685 702 1.805945 CCTACTCAGCGTTCGCCAC 60.806 63.158 13.54 0.00 0.00 5.01
708 725 2.430367 CACCTAATAGGCGGGCCC 59.570 66.667 13.57 13.57 39.63 5.80
739 756 4.014406 AGTTTCCCTGTCAAAACTCGTTT 58.986 39.130 0.00 0.00 40.74 3.60
740 757 5.065474 CAGTTTCCCTGTCAAAACTCGTTTA 59.935 40.000 0.00 0.00 42.31 2.01
756 773 1.730064 GTTTAAACGCGGATCAGCTCA 59.270 47.619 15.92 0.00 34.40 4.26
774 791 0.314935 CAATTTGTTGCCGCACTCCT 59.685 50.000 0.00 0.00 0.00 3.69
788 806 3.628032 CGCACTCCTAGACTTGATACTGA 59.372 47.826 0.00 0.00 0.00 3.41
790 808 5.587289 GCACTCCTAGACTTGATACTGAAG 58.413 45.833 0.00 0.00 0.00 3.02
794 812 8.740906 CACTCCTAGACTTGATACTGAAGTAAA 58.259 37.037 0.00 0.00 33.71 2.01
802 820 9.118236 GACTTGATACTGAAGTAAACAAAATGC 57.882 33.333 11.63 0.00 33.71 3.56
812 830 8.247562 TGAAGTAAACAAAATGCAAAGTAGTGT 58.752 29.630 0.00 0.00 0.00 3.55
866 884 8.716674 AATACTCCCTCCGTAAACTAATATGA 57.283 34.615 0.00 0.00 0.00 2.15
867 885 8.716674 ATACTCCCTCCGTAAACTAATATGAA 57.283 34.615 0.00 0.00 0.00 2.57
868 886 6.814043 ACTCCCTCCGTAAACTAATATGAAC 58.186 40.000 0.00 0.00 0.00 3.18
869 887 6.381994 ACTCCCTCCGTAAACTAATATGAACA 59.618 38.462 0.00 0.00 0.00 3.18
870 888 6.576185 TCCCTCCGTAAACTAATATGAACAC 58.424 40.000 0.00 0.00 0.00 3.32
871 889 6.381994 TCCCTCCGTAAACTAATATGAACACT 59.618 38.462 0.00 0.00 0.00 3.55
872 890 6.700520 CCCTCCGTAAACTAATATGAACACTC 59.299 42.308 0.00 0.00 0.00 3.51
873 891 7.417570 CCCTCCGTAAACTAATATGAACACTCT 60.418 40.741 0.00 0.00 0.00 3.24
874 892 7.980099 CCTCCGTAAACTAATATGAACACTCTT 59.020 37.037 0.00 0.00 0.00 2.85
938 956 3.961414 TCGAACTGGTTGGGGGCC 61.961 66.667 0.00 0.00 0.00 5.80
957 975 4.141344 GGGCCAACTAAATACCCATAGTCA 60.141 45.833 4.39 0.00 40.52 3.41
978 996 1.728701 TCTCCTCCTTTACCTTCCCCT 59.271 52.381 0.00 0.00 0.00 4.79
1063 1084 4.741239 TCCCCTCCTCCACAGCCC 62.741 72.222 0.00 0.00 0.00 5.19
1303 1324 0.338120 CCACTCCTCCTCCTCCTCTT 59.662 60.000 0.00 0.00 0.00 2.85
1305 1326 1.287739 CACTCCTCCTCCTCCTCTTCT 59.712 57.143 0.00 0.00 0.00 2.85
1306 1327 1.569072 ACTCCTCCTCCTCCTCTTCTC 59.431 57.143 0.00 0.00 0.00 2.87
1307 1328 0.930726 TCCTCCTCCTCCTCTTCTCC 59.069 60.000 0.00 0.00 0.00 3.71
1310 1331 2.516277 CCTCCTCCTCCTCTTCTCCTTA 59.484 54.545 0.00 0.00 0.00 2.69
1311 1332 3.052490 CCTCCTCCTCCTCTTCTCCTTAA 60.052 52.174 0.00 0.00 0.00 1.85
1345 1366 1.291877 GACGAGTGGCTGTTGCGAAT 61.292 55.000 0.00 0.00 40.82 3.34
1348 1369 0.593128 GAGTGGCTGTTGCGAATTGT 59.407 50.000 0.00 0.00 40.82 2.71
1418 1439 2.836944 GTGCTGGAAACGGTACCTC 58.163 57.895 10.90 0.15 45.53 3.85
1432 1453 2.641305 GTACCTCTCCTTGCTCTCGTA 58.359 52.381 0.00 0.00 0.00 3.43
1455 1476 5.567037 TCCTCTCTTGATCAAGTTTTGGA 57.433 39.130 29.80 26.39 39.38 3.53
1473 1494 2.270923 GGAAAATGAAATTGCTCCGCC 58.729 47.619 0.00 0.00 36.10 6.13
1474 1495 2.094026 GGAAAATGAAATTGCTCCGCCT 60.094 45.455 0.00 0.00 36.10 5.52
1475 1496 3.130340 GGAAAATGAAATTGCTCCGCCTA 59.870 43.478 0.00 0.00 36.10 3.93
1476 1497 4.354587 GAAAATGAAATTGCTCCGCCTAG 58.645 43.478 0.00 0.00 36.10 3.02
1477 1498 2.717639 ATGAAATTGCTCCGCCTAGT 57.282 45.000 0.00 0.00 0.00 2.57
1567 1598 0.949397 CATGAATGGCCGATCTGTGG 59.051 55.000 0.00 0.00 0.00 4.17
1579 1610 3.125829 CCGATCTGTGGATTCAGTTTGTG 59.874 47.826 0.00 0.00 36.85 3.33
1581 1612 4.092529 CGATCTGTGGATTCAGTTTGTGAG 59.907 45.833 0.00 0.00 36.21 3.51
1582 1613 3.141398 TCTGTGGATTCAGTTTGTGAGC 58.859 45.455 0.00 0.00 36.21 4.26
1598 1629 5.484173 TGTGAGCTTGAACAAACTAACTG 57.516 39.130 6.90 0.00 0.00 3.16
1709 1766 1.054348 CATGTCGCACGCTCAAAACG 61.054 55.000 0.00 0.00 0.00 3.60
1717 1774 1.193874 CACGCTCAAAACGTTCCTACC 59.806 52.381 0.00 0.00 42.96 3.18
1800 1857 1.470098 GCAATGACGGCAAGATGAAGT 59.530 47.619 0.00 0.00 0.00 3.01
1955 2013 3.256383 TGGACTGGACAAAATGCTCATTG 59.744 43.478 0.00 0.00 0.00 2.82
1976 2036 1.804151 TCTCCATTTTGTCTTTCGGCG 59.196 47.619 0.00 0.00 0.00 6.46
2084 2150 2.284112 CCCCAGCTGCCCAACATT 60.284 61.111 8.66 0.00 0.00 2.71
2100 2166 5.349270 CCCAACATTATGTGCATTTGTCAAG 59.651 40.000 0.00 0.00 0.00 3.02
2102 2168 5.136816 ACATTATGTGCATTTGTCAAGCA 57.863 34.783 0.00 0.00 35.63 3.91
2104 2170 5.047872 ACATTATGTGCATTTGTCAAGCAGA 60.048 36.000 0.00 0.02 39.21 4.26
2114 2180 2.091852 GTCAAGCAGACAAGCTAGCT 57.908 50.000 12.68 12.68 45.89 3.32
2116 2182 1.085091 CAAGCAGACAAGCTAGCTGG 58.915 55.000 20.16 19.04 45.89 4.85
2117 2183 0.979665 AAGCAGACAAGCTAGCTGGA 59.020 50.000 26.31 0.00 45.89 3.86
2118 2184 0.536260 AGCAGACAAGCTAGCTGGAG 59.464 55.000 26.31 17.05 44.50 3.86
2119 2185 0.248843 GCAGACAAGCTAGCTGGAGT 59.751 55.000 26.31 20.09 0.00 3.85
2121 2187 2.873649 GCAGACAAGCTAGCTGGAGTTT 60.874 50.000 26.31 13.34 0.00 2.66
2122 2188 3.617531 GCAGACAAGCTAGCTGGAGTTTA 60.618 47.826 26.31 0.00 0.00 2.01
2123 2189 3.929610 CAGACAAGCTAGCTGGAGTTTAC 59.070 47.826 26.31 9.59 0.00 2.01
2124 2190 3.578716 AGACAAGCTAGCTGGAGTTTACA 59.421 43.478 26.31 0.00 0.00 2.41
2125 2191 3.665190 ACAAGCTAGCTGGAGTTTACAC 58.335 45.455 26.31 0.00 0.00 2.90
2128 2194 2.094649 AGCTAGCTGGAGTTTACACGTC 60.095 50.000 18.57 0.00 0.00 4.34
2144 2210 2.970639 TCTGGGCGCTGTACAGAC 59.029 61.111 27.08 16.46 36.41 3.51
2152 2218 1.128692 GCGCTGTACAGACAAATGGAC 59.871 52.381 27.08 4.24 34.35 4.02
2154 2220 1.732259 GCTGTACAGACAAATGGACGG 59.268 52.381 27.08 0.00 42.46 4.79
2157 2223 2.000447 GTACAGACAAATGGACGGCTC 59.000 52.381 0.00 0.00 0.00 4.70
2188 2254 7.095607 CCATTGCCGAACTGTTTAGATAGATAC 60.096 40.741 0.00 0.00 0.00 2.24
2192 2258 5.852229 CCGAACTGTTTAGATAGATACGAGC 59.148 44.000 0.00 0.00 0.00 5.03
2221 2289 8.630037 ACGATGGCGATGATGTATTAGAATATA 58.370 33.333 0.00 0.00 41.64 0.86
2226 2294 9.457110 GGCGATGATGTATTAGAATATACAGAG 57.543 37.037 0.00 0.00 42.49 3.35
2252 2320 6.231951 TGTATTTTTCGACCTGTCCATGTAA 58.768 36.000 0.00 0.00 0.00 2.41
2253 2321 5.880054 ATTTTTCGACCTGTCCATGTAAG 57.120 39.130 0.00 0.00 0.00 2.34
2254 2322 4.345859 TTTTCGACCTGTCCATGTAAGT 57.654 40.909 0.00 0.00 0.00 2.24
2255 2323 5.471556 TTTTCGACCTGTCCATGTAAGTA 57.528 39.130 0.00 0.00 0.00 2.24
2256 2324 5.670792 TTTCGACCTGTCCATGTAAGTAT 57.329 39.130 0.00 0.00 0.00 2.12
2257 2325 6.778834 TTTCGACCTGTCCATGTAAGTATA 57.221 37.500 0.00 0.00 0.00 1.47
2258 2326 5.762825 TCGACCTGTCCATGTAAGTATAC 57.237 43.478 0.00 0.00 0.00 1.47
2259 2327 5.195185 TCGACCTGTCCATGTAAGTATACA 58.805 41.667 5.50 0.00 45.67 2.29
2260 2328 5.653330 TCGACCTGTCCATGTAAGTATACAA 59.347 40.000 5.50 0.00 44.81 2.41
2261 2329 5.747197 CGACCTGTCCATGTAAGTATACAAC 59.253 44.000 5.50 3.66 44.81 3.32
2275 2343 9.490379 GTAAGTATACAACCCTTAATCATCTGG 57.510 37.037 5.50 0.00 32.02 3.86
2276 2344 6.534634 AGTATACAACCCTTAATCATCTGGC 58.465 40.000 5.50 0.00 0.00 4.85
2282 2350 4.723309 ACCCTTAATCATCTGGCAAGATC 58.277 43.478 0.00 0.00 41.43 2.75
2283 2351 4.166725 ACCCTTAATCATCTGGCAAGATCA 59.833 41.667 0.00 0.00 41.43 2.92
2285 2353 5.009410 CCCTTAATCATCTGGCAAGATCAAC 59.991 44.000 0.00 0.00 41.43 3.18
2290 2358 2.010145 TCTGGCAAGATCAACTACGC 57.990 50.000 0.00 0.00 0.00 4.42
2291 2359 0.647410 CTGGCAAGATCAACTACGCG 59.353 55.000 3.53 3.53 0.00 6.01
2293 2361 1.358725 GGCAAGATCAACTACGCGCA 61.359 55.000 5.73 0.00 0.00 6.09
2306 2374 3.737172 GCGCAATGGCTCCACGTT 61.737 61.111 0.30 0.00 38.10 3.99
2307 2375 2.953821 CGCAATGGCTCCACGTTT 59.046 55.556 0.00 0.00 38.10 3.60
2312 2380 0.400213 AATGGCTCCACGTTTCCTGA 59.600 50.000 0.00 0.00 0.00 3.86
2318 2386 2.930682 GCTCCACGTTTCCTGATTAGTC 59.069 50.000 0.00 0.00 0.00 2.59
2342 2415 8.769891 GTCCATGTTTTTATAAACCAAAACTGG 58.230 33.333 14.78 14.78 42.39 4.00
2349 2422 8.853469 TTTTATAAACCAAAACTGGTGTTACG 57.147 30.769 0.00 0.00 42.20 3.18
2373 2496 2.950975 TCAGATTTGCAACTGTTCAGCA 59.049 40.909 14.65 1.84 35.84 4.41
2378 2501 4.710423 TTTGCAACTGTTCAGCACTAAA 57.290 36.364 0.00 0.00 38.11 1.85
2385 2508 5.597813 ACTGTTCAGCACTAAAATCTTCG 57.402 39.130 0.00 0.00 0.00 3.79
2386 2509 4.452455 ACTGTTCAGCACTAAAATCTTCGG 59.548 41.667 0.00 0.00 0.00 4.30
2403 2526 2.817834 GGTCGCGCTGCAATACCA 60.818 61.111 5.56 0.00 0.00 3.25
2415 2538 5.412594 CGCTGCAATACCAGGTTATATGATT 59.587 40.000 0.00 0.00 33.44 2.57
2437 2560 5.188327 TGGCAACAGAGAAGATAGATACG 57.812 43.478 0.00 0.00 46.17 3.06
2438 2561 3.984633 GGCAACAGAGAAGATAGATACGC 59.015 47.826 0.00 0.00 0.00 4.42
2439 2562 4.261825 GGCAACAGAGAAGATAGATACGCT 60.262 45.833 0.00 0.00 0.00 5.07
2440 2563 5.048643 GGCAACAGAGAAGATAGATACGCTA 60.049 44.000 0.00 0.00 0.00 4.26
2441 2564 5.854338 GCAACAGAGAAGATAGATACGCTAC 59.146 44.000 0.00 0.00 0.00 3.58
2442 2565 5.849357 ACAGAGAAGATAGATACGCTACG 57.151 43.478 0.00 0.00 0.00 3.51
2453 2576 2.607668 TACGCTACGCTTCGCAGCAT 62.608 55.000 8.03 0.00 45.29 3.79
2462 2585 2.658285 GCTTCGCAGCATAATTCCATG 58.342 47.619 0.97 0.00 46.49 3.66
2489 2612 8.772705 CCAAATTAAAATGTTTTAGCTGAAGCA 58.227 29.630 10.12 10.12 45.16 3.91
2496 2619 5.618056 TGTTTTAGCTGAAGCATCTGAAG 57.382 39.130 3.58 0.00 45.16 3.02
2507 2630 7.175347 TGAAGCATCTGAAGACAGTACTATT 57.825 36.000 0.00 0.00 43.81 1.73
2508 2631 8.293699 TGAAGCATCTGAAGACAGTACTATTA 57.706 34.615 0.00 0.00 43.81 0.98
2509 2632 8.191446 TGAAGCATCTGAAGACAGTACTATTAC 58.809 37.037 0.00 0.00 43.81 1.89
2510 2633 7.646548 AGCATCTGAAGACAGTACTATTACA 57.353 36.000 0.00 0.00 43.81 2.41
2511 2634 8.243961 AGCATCTGAAGACAGTACTATTACAT 57.756 34.615 0.00 0.00 43.81 2.29
2543 2677 7.212976 AGTCATACACTTATGATAGTTGCAGG 58.787 38.462 0.00 0.00 44.77 4.85
2557 2721 5.643379 AGTTGCAGGTTATTACAACCATG 57.357 39.130 8.76 5.43 42.61 3.66
2564 2728 6.095440 GCAGGTTATTACAACCATGATGAAGT 59.905 38.462 8.76 0.00 42.69 3.01
2588 2752 6.972901 GTGTTCAAAAGAGAAACCACTTTAGG 59.027 38.462 0.00 0.00 35.66 2.69
2590 2754 7.559897 TGTTCAAAAGAGAAACCACTTTAGGAT 59.440 33.333 0.00 0.00 35.66 3.24
2591 2755 8.414003 GTTCAAAAGAGAAACCACTTTAGGATT 58.586 33.333 0.00 0.00 35.66 3.01
2600 2764 9.495382 AGAAACCACTTTAGGATTCTAGATACT 57.505 33.333 4.01 0.00 45.54 2.12
2613 2777 5.236655 TCTAGATACTCAGCGAAACACAG 57.763 43.478 0.00 0.00 0.00 3.66
2617 2781 1.583054 ACTCAGCGAAACACAGTTCC 58.417 50.000 0.00 0.00 0.00 3.62
2618 2782 1.139058 ACTCAGCGAAACACAGTTCCT 59.861 47.619 0.00 0.00 0.00 3.36
2619 2783 1.528586 CTCAGCGAAACACAGTTCCTG 59.471 52.381 0.00 0.00 37.52 3.86
2627 2791 0.773644 ACACAGTTCCTGGGCTTCAT 59.226 50.000 0.00 0.00 38.67 2.57
2635 2802 0.914644 CCTGGGCTTCATCTCCAAGA 59.085 55.000 0.00 0.00 0.00 3.02
2636 2803 1.283029 CCTGGGCTTCATCTCCAAGAA 59.717 52.381 0.00 0.00 0.00 2.52
2637 2804 2.641305 CTGGGCTTCATCTCCAAGAAG 58.359 52.381 0.00 0.00 43.12 2.85
2638 2805 1.283029 TGGGCTTCATCTCCAAGAAGG 59.717 52.381 0.00 0.00 41.13 3.46
2639 2806 1.561542 GGGCTTCATCTCCAAGAAGGA 59.438 52.381 0.00 0.00 46.75 3.36
2670 2837 5.468540 TGACTGTAGCTTGTTACACATCT 57.531 39.130 0.00 0.00 30.74 2.90
2691 2858 3.713288 TGTTATCTGGCTACCGAATTCG 58.287 45.455 20.92 20.92 39.44 3.34
2718 2885 4.670765 ACTCATTCTCATTGGGCTTCTTT 58.329 39.130 0.00 0.00 0.00 2.52
2723 2890 1.446618 CATTGGGCTTCTTTGCGGC 60.447 57.895 0.00 0.00 0.00 6.53
2761 2928 0.177604 CTCTGCAGGTTGCCTAGGAG 59.822 60.000 14.75 0.00 44.23 3.69
2916 3083 3.391506 AATGCAAAGGGCTCTTTTGTC 57.608 42.857 9.42 2.30 45.15 3.18
2958 3125 1.094785 CACCACCGGTCATTTCATCC 58.905 55.000 2.59 0.00 31.02 3.51
2988 3155 5.183228 TCTTCTTCGGTGTTCTCAGTTTTT 58.817 37.500 0.00 0.00 0.00 1.94
2991 3158 5.123227 TCTTCGGTGTTCTCAGTTTTTGAT 58.877 37.500 0.00 0.00 34.68 2.57
3000 3167 3.569701 TCTCAGTTTTTGATTCCACCAGC 59.430 43.478 0.00 0.00 34.68 4.85
3003 3170 2.554032 AGTTTTTGATTCCACCAGCTCG 59.446 45.455 0.00 0.00 0.00 5.03
3006 3173 0.250234 TTGATTCCACCAGCTCGGAG 59.750 55.000 8.91 0.00 38.63 4.63
3014 3181 2.501610 CAGCTCGGAGGGCCTAAC 59.498 66.667 5.73 0.87 0.00 2.34
3015 3182 2.038975 AGCTCGGAGGGCCTAACA 59.961 61.111 5.73 0.00 0.00 2.41
3016 3183 1.612442 AGCTCGGAGGGCCTAACAA 60.612 57.895 5.73 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.132481 CTTTTTGCCCCGCGTGTGT 62.132 57.895 4.92 0.00 0.00 3.72
1 2 2.354539 CTTTTTGCCCCGCGTGTG 60.355 61.111 4.92 0.00 0.00 3.82
2 3 2.517402 TCTTTTTGCCCCGCGTGT 60.517 55.556 4.92 0.00 0.00 4.49
3 4 2.255252 CTCTTTTTGCCCCGCGTG 59.745 61.111 4.92 0.00 0.00 5.34
4 5 3.670377 GCTCTTTTTGCCCCGCGT 61.670 61.111 4.92 0.00 0.00 6.01
5 6 3.328288 GAGCTCTTTTTGCCCCGCG 62.328 63.158 6.43 0.00 0.00 6.46
6 7 2.568612 GAGCTCTTTTTGCCCCGC 59.431 61.111 6.43 0.00 0.00 6.13
7 8 1.966451 ACGAGCTCTTTTTGCCCCG 60.966 57.895 12.85 0.00 34.72 5.73
8 9 1.172812 ACACGAGCTCTTTTTGCCCC 61.173 55.000 12.85 0.00 0.00 5.80
9 10 0.040067 CACACGAGCTCTTTTTGCCC 60.040 55.000 12.85 0.00 0.00 5.36
10 11 0.661483 GCACACGAGCTCTTTTTGCC 60.661 55.000 12.85 0.00 0.00 4.52
11 12 0.993746 CGCACACGAGCTCTTTTTGC 60.994 55.000 12.85 12.15 43.93 3.68
12 13 0.581529 TCGCACACGAGCTCTTTTTG 59.418 50.000 12.85 6.09 45.12 2.44
13 14 2.986311 TCGCACACGAGCTCTTTTT 58.014 47.368 12.85 0.00 45.12 1.94
14 15 4.750460 TCGCACACGAGCTCTTTT 57.250 50.000 12.85 0.00 45.12 2.27
23 24 2.944557 CTCGTCCGATCGCACACG 60.945 66.667 20.16 20.16 42.01 4.49
24 25 3.248171 GCTCGTCCGATCGCACAC 61.248 66.667 10.27 5.10 0.00 3.82
25 26 4.492160 GGCTCGTCCGATCGCACA 62.492 66.667 10.27 0.00 0.00 4.57
26 27 3.774959 ATGGCTCGTCCGATCGCAC 62.775 63.158 10.32 3.77 37.80 5.34
27 28 3.484742 GATGGCTCGTCCGATCGCA 62.485 63.158 10.32 0.08 37.80 5.10
28 29 2.731348 GATGGCTCGTCCGATCGC 60.731 66.667 10.32 0.00 37.80 4.58
29 30 1.658717 GTGATGGCTCGTCCGATCG 60.659 63.158 8.51 8.51 37.80 3.69
30 31 0.596083 CTGTGATGGCTCGTCCGATC 60.596 60.000 0.00 0.00 37.80 3.69
31 32 1.037579 TCTGTGATGGCTCGTCCGAT 61.038 55.000 0.00 0.00 37.80 4.18
32 33 1.677633 TCTGTGATGGCTCGTCCGA 60.678 57.895 0.00 0.00 37.80 4.55
33 34 1.517257 GTCTGTGATGGCTCGTCCG 60.517 63.158 0.00 0.00 37.80 4.79
34 35 0.037326 TTGTCTGTGATGGCTCGTCC 60.037 55.000 0.00 0.00 0.00 4.79
35 36 2.015736 ATTGTCTGTGATGGCTCGTC 57.984 50.000 0.00 0.00 0.00 4.20
36 37 2.479566 AATTGTCTGTGATGGCTCGT 57.520 45.000 0.00 0.00 0.00 4.18
37 38 5.049828 TGTATAATTGTCTGTGATGGCTCG 58.950 41.667 0.00 0.00 0.00 5.03
38 39 5.468072 CCTGTATAATTGTCTGTGATGGCTC 59.532 44.000 0.00 0.00 0.00 4.70
39 40 5.371526 CCTGTATAATTGTCTGTGATGGCT 58.628 41.667 0.00 0.00 0.00 4.75
40 41 4.023707 GCCTGTATAATTGTCTGTGATGGC 60.024 45.833 0.00 0.00 0.00 4.40
41 42 4.516698 GGCCTGTATAATTGTCTGTGATGG 59.483 45.833 0.00 0.00 0.00 3.51
42 43 5.125356 TGGCCTGTATAATTGTCTGTGATG 58.875 41.667 3.32 0.00 0.00 3.07
43 44 5.372343 TGGCCTGTATAATTGTCTGTGAT 57.628 39.130 3.32 0.00 0.00 3.06
44 45 4.835284 TGGCCTGTATAATTGTCTGTGA 57.165 40.909 3.32 0.00 0.00 3.58
45 46 5.895636 TTTGGCCTGTATAATTGTCTGTG 57.104 39.130 3.32 0.00 0.00 3.66
46 47 5.106317 CGTTTTGGCCTGTATAATTGTCTGT 60.106 40.000 3.32 0.00 0.00 3.41
47 48 5.106317 ACGTTTTGGCCTGTATAATTGTCTG 60.106 40.000 3.32 0.00 0.00 3.51
48 49 5.007682 ACGTTTTGGCCTGTATAATTGTCT 58.992 37.500 3.32 0.00 0.00 3.41
49 50 5.305139 ACGTTTTGGCCTGTATAATTGTC 57.695 39.130 3.32 0.00 0.00 3.18
50 51 5.715434 AACGTTTTGGCCTGTATAATTGT 57.285 34.783 3.32 0.00 0.00 2.71
51 52 6.183359 CGAAAACGTTTTGGCCTGTATAATTG 60.183 38.462 29.67 2.38 0.00 2.32
52 53 5.859648 CGAAAACGTTTTGGCCTGTATAATT 59.140 36.000 29.67 1.14 0.00 1.40
53 54 5.048573 ACGAAAACGTTTTGGCCTGTATAAT 60.049 36.000 29.67 7.37 30.26 1.28
54 55 4.275443 ACGAAAACGTTTTGGCCTGTATAA 59.725 37.500 29.67 0.00 30.26 0.98
55 56 3.814283 ACGAAAACGTTTTGGCCTGTATA 59.186 39.130 29.67 0.00 30.26 1.47
56 57 2.619646 ACGAAAACGTTTTGGCCTGTAT 59.380 40.909 29.67 9.44 30.26 2.29
57 58 2.015587 ACGAAAACGTTTTGGCCTGTA 58.984 42.857 29.67 0.00 30.26 2.74
58 59 0.812549 ACGAAAACGTTTTGGCCTGT 59.187 45.000 29.67 16.18 30.26 4.00
59 60 1.849829 GAACGAAAACGTTTTGGCCTG 59.150 47.619 29.67 15.61 31.71 4.85
60 61 1.532298 CGAACGAAAACGTTTTGGCCT 60.532 47.619 29.67 18.54 31.71 5.19
61 62 0.841356 CGAACGAAAACGTTTTGGCC 59.159 50.000 29.67 20.57 31.71 5.36
62 63 0.225241 GCGAACGAAAACGTTTTGGC 59.775 50.000 29.67 19.04 31.71 4.52
63 64 1.250749 GTGCGAACGAAAACGTTTTGG 59.749 47.619 29.67 28.47 31.71 3.28
64 65 1.073939 CGTGCGAACGAAAACGTTTTG 60.074 47.619 29.67 21.89 34.64 2.44
65 66 1.173526 CGTGCGAACGAAAACGTTTT 58.826 45.000 25.46 25.46 34.64 2.43
66 67 0.095073 ACGTGCGAACGAAAACGTTT 59.905 45.000 25.68 7.96 46.27 3.60
67 68 0.919981 TACGTGCGAACGAAAACGTT 59.080 45.000 25.68 7.69 46.27 3.99
68 69 3.387064 ACGTGCGAACGAAAACGT 58.613 50.000 25.68 13.82 43.87 3.99
69 70 0.226734 TGTACGTGCGAACGAAAACG 59.773 50.000 25.68 4.45 41.64 3.60
70 71 2.097299 TGATGTACGTGCGAACGAAAAC 60.097 45.455 25.68 17.29 36.85 2.43
71 72 2.097299 GTGATGTACGTGCGAACGAAAA 60.097 45.455 25.68 7.34 36.85 2.29
72 73 1.452773 GTGATGTACGTGCGAACGAAA 59.547 47.619 25.68 7.36 36.85 3.46
73 74 1.054574 GTGATGTACGTGCGAACGAA 58.945 50.000 25.68 8.14 36.85 3.85
74 75 0.040246 TGTGATGTACGTGCGAACGA 60.040 50.000 25.68 0.00 36.85 3.85
75 76 0.090676 GTGTGATGTACGTGCGAACG 59.909 55.000 16.06 16.06 39.31 3.95
76 77 1.133407 TGTGTGATGTACGTGCGAAC 58.867 50.000 0.00 0.00 0.00 3.95
77 78 1.133407 GTGTGTGATGTACGTGCGAA 58.867 50.000 0.00 0.00 0.00 4.70
78 79 0.030908 TGTGTGTGATGTACGTGCGA 59.969 50.000 0.00 0.00 0.00 5.10
79 80 0.855995 TTGTGTGTGATGTACGTGCG 59.144 50.000 0.00 0.00 0.00 5.34
80 81 3.536158 AATTGTGTGTGATGTACGTGC 57.464 42.857 0.00 0.00 0.00 5.34
81 82 5.398122 GGAAAAATTGTGTGTGATGTACGTG 59.602 40.000 0.00 0.00 0.00 4.49
82 83 5.506649 GGGAAAAATTGTGTGTGATGTACGT 60.507 40.000 0.00 0.00 0.00 3.57
83 84 4.915085 GGGAAAAATTGTGTGTGATGTACG 59.085 41.667 0.00 0.00 0.00 3.67
84 85 5.837437 TGGGAAAAATTGTGTGTGATGTAC 58.163 37.500 0.00 0.00 0.00 2.90
85 86 6.266330 TGATGGGAAAAATTGTGTGTGATGTA 59.734 34.615 0.00 0.00 0.00 2.29
86 87 5.070180 TGATGGGAAAAATTGTGTGTGATGT 59.930 36.000 0.00 0.00 0.00 3.06
87 88 5.539979 TGATGGGAAAAATTGTGTGTGATG 58.460 37.500 0.00 0.00 0.00 3.07
88 89 5.804944 TGATGGGAAAAATTGTGTGTGAT 57.195 34.783 0.00 0.00 0.00 3.06
89 90 5.604758 TTGATGGGAAAAATTGTGTGTGA 57.395 34.783 0.00 0.00 0.00 3.58
90 91 6.482641 TGATTTGATGGGAAAAATTGTGTGTG 59.517 34.615 0.00 0.00 0.00 3.82
91 92 6.590068 TGATTTGATGGGAAAAATTGTGTGT 58.410 32.000 0.00 0.00 0.00 3.72
92 93 7.675962 ATGATTTGATGGGAAAAATTGTGTG 57.324 32.000 0.00 0.00 0.00 3.82
93 94 9.386010 CATATGATTTGATGGGAAAAATTGTGT 57.614 29.630 0.00 0.00 0.00 3.72
94 95 9.386010 ACATATGATTTGATGGGAAAAATTGTG 57.614 29.630 10.38 0.00 0.00 3.33
95 96 9.386010 CACATATGATTTGATGGGAAAAATTGT 57.614 29.630 10.38 0.00 0.00 2.71
96 97 9.602568 TCACATATGATTTGATGGGAAAAATTG 57.397 29.630 10.38 0.00 32.53 2.32
100 101 8.579006 GCTATCACATATGATTTGATGGGAAAA 58.421 33.333 10.38 0.00 43.40 2.29
101 102 7.094677 CGCTATCACATATGATTTGATGGGAAA 60.095 37.037 10.38 0.00 43.40 3.13
102 103 6.372381 CGCTATCACATATGATTTGATGGGAA 59.628 38.462 10.38 0.00 43.40 3.97
103 104 5.876460 CGCTATCACATATGATTTGATGGGA 59.124 40.000 10.38 0.00 43.40 4.37
104 105 5.645067 ACGCTATCACATATGATTTGATGGG 59.355 40.000 10.38 12.42 43.40 4.00
105 106 6.732531 ACGCTATCACATATGATTTGATGG 57.267 37.500 10.38 11.12 43.40 3.51
106 107 6.522165 GCAACGCTATCACATATGATTTGATG 59.478 38.462 10.38 5.16 43.40 3.07
107 108 6.348786 GGCAACGCTATCACATATGATTTGAT 60.349 38.462 10.38 10.74 43.40 2.57
108 109 5.049474 GGCAACGCTATCACATATGATTTGA 60.049 40.000 10.38 3.17 43.40 2.69
109 110 5.149273 GGCAACGCTATCACATATGATTTG 58.851 41.667 10.38 0.00 43.40 2.32
110 111 4.821260 TGGCAACGCTATCACATATGATTT 59.179 37.500 10.38 0.00 40.95 2.17
111 112 4.388485 TGGCAACGCTATCACATATGATT 58.612 39.130 10.38 0.00 40.95 2.57
112 113 4.006780 TGGCAACGCTATCACATATGAT 57.993 40.909 10.38 0.00 44.57 2.45
113 114 3.467374 TGGCAACGCTATCACATATGA 57.533 42.857 10.38 0.00 38.51 2.15
114 115 4.378770 GGAATGGCAACGCTATCACATATG 60.379 45.833 0.00 0.00 42.51 1.78
115 116 3.753272 GGAATGGCAACGCTATCACATAT 59.247 43.478 0.00 0.00 42.51 1.78
116 117 3.138304 GGAATGGCAACGCTATCACATA 58.862 45.455 0.00 0.00 42.51 2.29
117 118 1.949525 GGAATGGCAACGCTATCACAT 59.050 47.619 0.00 0.00 42.51 3.21
118 119 1.339535 TGGAATGGCAACGCTATCACA 60.340 47.619 0.00 0.00 42.51 3.58
119 120 1.331756 CTGGAATGGCAACGCTATCAC 59.668 52.381 0.00 0.00 42.51 3.06
120 121 1.209261 TCTGGAATGGCAACGCTATCA 59.791 47.619 0.00 0.00 42.51 2.15
121 122 1.599542 GTCTGGAATGGCAACGCTATC 59.400 52.381 0.00 0.00 42.51 2.08
122 123 1.668419 GTCTGGAATGGCAACGCTAT 58.332 50.000 0.00 0.00 42.51 2.97
123 124 0.739462 CGTCTGGAATGGCAACGCTA 60.739 55.000 0.00 0.00 42.51 4.26
124 125 2.034879 CGTCTGGAATGGCAACGCT 61.035 57.895 0.00 0.00 42.51 5.07
125 126 1.369091 ATCGTCTGGAATGGCAACGC 61.369 55.000 2.45 0.00 42.51 4.84
126 127 1.934589 TATCGTCTGGAATGGCAACG 58.065 50.000 0.00 0.00 42.51 4.10
127 128 6.560253 ATTAATATCGTCTGGAATGGCAAC 57.440 37.500 0.00 0.00 0.00 4.17
128 129 7.450074 ACTATTAATATCGTCTGGAATGGCAA 58.550 34.615 0.00 0.00 0.00 4.52
129 130 7.004555 ACTATTAATATCGTCTGGAATGGCA 57.995 36.000 0.00 0.00 0.00 4.92
130 131 7.907214 AACTATTAATATCGTCTGGAATGGC 57.093 36.000 0.00 0.00 0.00 4.40
151 152 9.730420 GCATTCAATAATACCAACGATAAAACT 57.270 29.630 0.00 0.00 0.00 2.66
152 153 9.509855 TGCATTCAATAATACCAACGATAAAAC 57.490 29.630 0.00 0.00 0.00 2.43
154 155 9.891828 GATGCATTCAATAATACCAACGATAAA 57.108 29.630 0.00 0.00 0.00 1.40
155 156 9.061435 TGATGCATTCAATAATACCAACGATAA 57.939 29.630 0.00 0.00 0.00 1.75
156 157 8.503196 GTGATGCATTCAATAATACCAACGATA 58.497 33.333 0.00 0.00 35.70 2.92
157 158 7.362662 GTGATGCATTCAATAATACCAACGAT 58.637 34.615 0.00 0.00 35.70 3.73
158 159 6.510960 CGTGATGCATTCAATAATACCAACGA 60.511 38.462 0.00 0.00 35.70 3.85
159 160 5.620822 CGTGATGCATTCAATAATACCAACG 59.379 40.000 0.00 0.00 35.70 4.10
160 161 5.399301 GCGTGATGCATTCAATAATACCAAC 59.601 40.000 0.00 0.00 45.45 3.77
161 162 5.518812 GCGTGATGCATTCAATAATACCAA 58.481 37.500 0.00 0.00 45.45 3.67
162 163 5.107109 GCGTGATGCATTCAATAATACCA 57.893 39.130 0.00 0.00 45.45 3.25
177 178 2.125713 TAGGCACCGTGCGTGATG 60.126 61.111 25.18 0.00 46.21 3.07
178 179 1.884075 TTCTAGGCACCGTGCGTGAT 61.884 55.000 25.18 10.78 46.21 3.06
179 180 2.486636 CTTCTAGGCACCGTGCGTGA 62.487 60.000 25.18 17.68 46.21 4.35
180 181 2.048597 TTCTAGGCACCGTGCGTG 60.049 61.111 25.18 16.01 46.21 5.34
181 182 1.812686 TTCTTCTAGGCACCGTGCGT 61.813 55.000 21.38 21.38 46.21 5.24
182 183 0.669318 TTTCTTCTAGGCACCGTGCG 60.669 55.000 17.13 4.06 46.21 5.34
183 184 0.796927 GTTTCTTCTAGGCACCGTGC 59.203 55.000 15.50 15.50 44.08 5.34
184 185 2.163818 TGTTTCTTCTAGGCACCGTG 57.836 50.000 0.00 0.00 0.00 4.94
185 186 2.922740 TTGTTTCTTCTAGGCACCGT 57.077 45.000 0.00 0.00 0.00 4.83
186 187 3.074412 ACATTGTTTCTTCTAGGCACCG 58.926 45.455 0.00 0.00 0.00 4.94
187 188 3.191371 CCACATTGTTTCTTCTAGGCACC 59.809 47.826 0.00 0.00 0.00 5.01
188 189 3.366374 GCCACATTGTTTCTTCTAGGCAC 60.366 47.826 5.83 0.00 39.35 5.01
189 190 2.819608 GCCACATTGTTTCTTCTAGGCA 59.180 45.455 5.83 0.00 39.35 4.75
190 191 2.819608 TGCCACATTGTTTCTTCTAGGC 59.180 45.455 0.00 0.00 39.95 3.93
191 192 5.297776 CCTATGCCACATTGTTTCTTCTAGG 59.702 44.000 0.00 0.00 0.00 3.02
192 193 5.882557 ACCTATGCCACATTGTTTCTTCTAG 59.117 40.000 0.00 0.00 0.00 2.43
193 194 5.815581 ACCTATGCCACATTGTTTCTTCTA 58.184 37.500 0.00 0.00 0.00 2.10
194 195 4.666512 ACCTATGCCACATTGTTTCTTCT 58.333 39.130 0.00 0.00 0.00 2.85
195 196 5.163513 CAACCTATGCCACATTGTTTCTTC 58.836 41.667 0.00 0.00 0.00 2.87
196 197 4.588528 ACAACCTATGCCACATTGTTTCTT 59.411 37.500 0.00 0.00 29.30 2.52
197 198 4.151883 ACAACCTATGCCACATTGTTTCT 58.848 39.130 0.00 0.00 29.30 2.52
198 199 4.485163 GACAACCTATGCCACATTGTTTC 58.515 43.478 0.00 0.00 33.76 2.78
199 200 3.258123 GGACAACCTATGCCACATTGTTT 59.742 43.478 0.00 0.00 33.76 2.83
200 201 2.825532 GGACAACCTATGCCACATTGTT 59.174 45.455 0.00 0.00 33.76 2.83
201 202 2.224992 TGGACAACCTATGCCACATTGT 60.225 45.455 0.00 0.00 36.24 2.71
202 203 2.445427 TGGACAACCTATGCCACATTG 58.555 47.619 0.00 0.00 37.04 2.82
203 204 2.897271 TGGACAACCTATGCCACATT 57.103 45.000 0.00 0.00 37.04 2.71
204 205 2.241941 TGATGGACAACCTATGCCACAT 59.758 45.455 0.00 0.00 37.81 3.21
205 206 1.632920 TGATGGACAACCTATGCCACA 59.367 47.619 0.00 0.00 37.81 4.17
206 207 2.017049 GTGATGGACAACCTATGCCAC 58.983 52.381 0.00 0.00 37.81 5.01
207 208 1.632920 TGTGATGGACAACCTATGCCA 59.367 47.619 0.00 0.00 38.83 4.92
208 209 2.017049 GTGTGATGGACAACCTATGCC 58.983 52.381 0.00 0.00 35.91 4.40
209 210 2.710377 TGTGTGATGGACAACCTATGC 58.290 47.619 0.00 0.00 35.91 3.14
210 211 4.761739 AGTTTGTGTGATGGACAACCTATG 59.238 41.667 0.00 0.00 35.91 2.23
211 212 4.985538 AGTTTGTGTGATGGACAACCTAT 58.014 39.130 0.00 0.00 35.91 2.57
212 213 4.431416 AGTTTGTGTGATGGACAACCTA 57.569 40.909 0.00 0.00 35.91 3.08
213 214 3.297134 AGTTTGTGTGATGGACAACCT 57.703 42.857 0.00 0.00 35.91 3.50
214 215 4.385358 AAAGTTTGTGTGATGGACAACC 57.615 40.909 0.00 0.00 35.91 3.77
215 216 7.491048 ACATAAAAAGTTTGTGTGATGGACAAC 59.509 33.333 9.32 0.00 35.91 3.32
216 217 7.551585 ACATAAAAAGTTTGTGTGATGGACAA 58.448 30.769 9.32 0.00 35.91 3.18
217 218 7.106439 ACATAAAAAGTTTGTGTGATGGACA 57.894 32.000 9.32 0.00 0.00 4.02
218 219 7.704472 TCAACATAAAAAGTTTGTGTGATGGAC 59.296 33.333 9.32 0.00 0.00 4.02
219 220 7.776107 TCAACATAAAAAGTTTGTGTGATGGA 58.224 30.769 9.32 1.72 0.00 3.41
220 221 8.417780 TTCAACATAAAAAGTTTGTGTGATGG 57.582 30.769 9.32 0.00 0.00 3.51
223 224 8.428536 CGTTTTCAACATAAAAAGTTTGTGTGA 58.571 29.630 9.32 4.26 30.53 3.58
224 225 8.217778 ACGTTTTCAACATAAAAAGTTTGTGTG 58.782 29.630 1.22 1.22 37.65 3.82
225 226 8.300495 ACGTTTTCAACATAAAAAGTTTGTGT 57.700 26.923 0.00 0.00 37.65 3.72
230 231 6.950979 CGCAAACGTTTTCAACATAAAAAGTT 59.049 30.769 11.66 7.31 46.09 2.66
231 232 6.462647 CGCAAACGTTTTCAACATAAAAAGT 58.537 32.000 11.66 0.00 40.97 2.66
232 233 5.388288 GCGCAAACGTTTTCAACATAAAAAG 59.612 36.000 11.66 0.00 42.83 2.27
233 234 5.163992 TGCGCAAACGTTTTCAACATAAAAA 60.164 32.000 8.16 0.00 42.83 1.94
234 235 4.326278 TGCGCAAACGTTTTCAACATAAAA 59.674 33.333 8.16 0.00 42.83 1.52
235 236 3.857665 TGCGCAAACGTTTTCAACATAAA 59.142 34.783 8.16 0.00 42.83 1.40
236 237 3.435566 TGCGCAAACGTTTTCAACATAA 58.564 36.364 8.16 0.00 42.83 1.90
237 238 3.066369 TGCGCAAACGTTTTCAACATA 57.934 38.095 8.16 0.00 42.83 2.29
238 239 1.914634 TGCGCAAACGTTTTCAACAT 58.085 40.000 8.16 0.00 42.83 2.71
239 240 1.651138 CTTGCGCAAACGTTTTCAACA 59.349 42.857 25.01 5.05 42.83 3.33
240 241 1.006494 CCTTGCGCAAACGTTTTCAAC 60.006 47.619 25.01 2.25 42.83 3.18
241 242 1.272781 CCTTGCGCAAACGTTTTCAA 58.727 45.000 25.01 13.92 42.83 2.69
242 243 0.171455 ACCTTGCGCAAACGTTTTCA 59.829 45.000 25.01 7.03 42.83 2.69
243 244 0.570272 CACCTTGCGCAAACGTTTTC 59.430 50.000 25.01 5.58 42.83 2.29
244 245 0.109039 ACACCTTGCGCAAACGTTTT 60.109 45.000 25.01 9.28 42.83 2.43
245 246 0.109039 AACACCTTGCGCAAACGTTT 60.109 45.000 25.01 13.01 42.83 3.60
246 247 0.524604 GAACACCTTGCGCAAACGTT 60.525 50.000 25.01 24.13 42.83 3.99
247 248 1.063488 GAACACCTTGCGCAAACGT 59.937 52.632 25.01 19.37 42.83 3.99
248 249 0.584396 TAGAACACCTTGCGCAAACG 59.416 50.000 25.01 18.70 44.07 3.60
249 250 2.979813 CAATAGAACACCTTGCGCAAAC 59.020 45.455 25.01 10.91 0.00 2.93
250 251 2.881513 TCAATAGAACACCTTGCGCAAA 59.118 40.909 25.01 6.83 0.00 3.68
251 252 2.499197 TCAATAGAACACCTTGCGCAA 58.501 42.857 23.48 23.48 0.00 4.85
252 253 2.177394 TCAATAGAACACCTTGCGCA 57.823 45.000 5.66 5.66 0.00 6.09
253 254 3.764885 AATCAATAGAACACCTTGCGC 57.235 42.857 0.00 0.00 0.00 6.09
254 255 3.853671 GCAAATCAATAGAACACCTTGCG 59.146 43.478 0.00 0.00 0.00 4.85
255 256 4.176271 GGCAAATCAATAGAACACCTTGC 58.824 43.478 0.00 0.00 37.72 4.01
256 257 5.389859 TGGCAAATCAATAGAACACCTTG 57.610 39.130 0.00 0.00 0.00 3.61
257 258 7.716799 TTATGGCAAATCAATAGAACACCTT 57.283 32.000 0.00 0.00 0.00 3.50
258 259 7.902920 ATTATGGCAAATCAATAGAACACCT 57.097 32.000 0.00 0.00 0.00 4.00
259 260 8.947055 AAATTATGGCAAATCAATAGAACACC 57.053 30.769 0.00 0.00 0.00 4.16
311 312 2.408271 TGGTAGCAATGGAGAGCAAG 57.592 50.000 0.00 0.00 0.00 4.01
315 316 6.543465 TGATTGTAATTGGTAGCAATGGAGAG 59.457 38.462 20.22 0.00 32.47 3.20
338 339 9.599866 CACACCTAGTTCTTCATATACAATTGA 57.400 33.333 13.59 0.00 0.00 2.57
357 358 5.419542 GTTCACTAAGATCATGCACACCTA 58.580 41.667 0.00 0.00 0.00 3.08
360 361 4.256920 AGGTTCACTAAGATCATGCACAC 58.743 43.478 0.00 0.00 0.00 3.82
365 366 5.583854 CCACAAGAGGTTCACTAAGATCATG 59.416 44.000 0.00 0.00 0.00 3.07
370 371 2.038557 GGCCACAAGAGGTTCACTAAGA 59.961 50.000 0.00 0.00 0.00 2.10
373 374 1.071699 GTGGCCACAAGAGGTTCACTA 59.928 52.381 31.23 0.00 34.48 2.74
417 418 1.841663 GACGTTGTCAATGGCGCTGT 61.842 55.000 7.64 0.00 32.09 4.40
418 419 1.154413 GACGTTGTCAATGGCGCTG 60.154 57.895 7.64 0.00 32.09 5.18
419 420 2.667318 CGACGTTGTCAATGGCGCT 61.667 57.895 19.55 0.00 42.70 5.92
427 428 1.300620 CTTGGAGCCGACGTTGTCA 60.301 57.895 1.30 0.00 32.09 3.58
438 439 0.784778 CGACAACGACTTCTTGGAGC 59.215 55.000 0.00 0.00 42.66 4.70
448 449 2.405212 CGACGACGACGACAACGAC 61.405 63.158 15.32 1.87 41.06 4.34
460 461 1.084370 ATGCTAGCTTTGGCGACGAC 61.084 55.000 17.23 0.00 44.37 4.34
461 462 0.458260 TATGCTAGCTTTGGCGACGA 59.542 50.000 17.23 0.00 44.37 4.20
462 463 1.004927 GTTATGCTAGCTTTGGCGACG 60.005 52.381 17.23 0.00 44.37 5.12
464 465 2.691409 AGTTATGCTAGCTTTGGCGA 57.309 45.000 17.23 0.00 44.37 5.54
465 466 3.717707 TCTAGTTATGCTAGCTTTGGCG 58.282 45.455 17.23 0.00 45.22 5.69
467 468 7.265673 TGTTACTCTAGTTATGCTAGCTTTGG 58.734 38.462 17.23 0.00 45.22 3.28
468 469 7.043059 GCTGTTACTCTAGTTATGCTAGCTTTG 60.043 40.741 17.23 0.00 45.22 2.77
469 470 6.981559 GCTGTTACTCTAGTTATGCTAGCTTT 59.018 38.462 17.23 6.13 45.22 3.51
470 471 6.461788 GGCTGTTACTCTAGTTATGCTAGCTT 60.462 42.308 17.23 12.56 45.22 3.74
471 472 5.010213 GGCTGTTACTCTAGTTATGCTAGCT 59.990 44.000 17.23 4.07 45.22 3.32
472 473 5.221263 TGGCTGTTACTCTAGTTATGCTAGC 60.221 44.000 8.10 8.10 45.22 3.42
473 474 6.183360 TGTGGCTGTTACTCTAGTTATGCTAG 60.183 42.308 0.00 0.00 46.59 3.42
492 493 0.616111 AGGAGGAATCGACTGTGGCT 60.616 55.000 0.00 0.00 0.00 4.75
498 499 2.315176 CATCAGGAGGAGGAATCGACT 58.685 52.381 0.00 0.00 0.00 4.18
516 517 0.037697 TCACGAGTTTGGTAGCGCAT 60.038 50.000 11.47 0.00 0.00 4.73
521 522 1.893801 AGACCCTCACGAGTTTGGTAG 59.106 52.381 0.00 0.00 0.00 3.18
530 531 2.589720 TGACAACTTAGACCCTCACGA 58.410 47.619 0.00 0.00 0.00 4.35
531 532 3.594603 ATGACAACTTAGACCCTCACG 57.405 47.619 0.00 0.00 0.00 4.35
532 533 4.642429 ACAATGACAACTTAGACCCTCAC 58.358 43.478 0.00 0.00 0.00 3.51
545 546 0.179004 ACTCCGGGCAACAATGACAA 60.179 50.000 0.00 0.00 35.69 3.18
552 553 1.003839 GATGTGACTCCGGGCAACA 60.004 57.895 0.00 1.76 39.74 3.33
554 555 2.220586 TGGATGTGACTCCGGGCAA 61.221 57.895 0.00 0.00 38.21 4.52
555 556 2.606213 TGGATGTGACTCCGGGCA 60.606 61.111 0.00 0.00 38.21 5.36
560 576 0.749454 GGCATGGTGGATGTGACTCC 60.749 60.000 0.00 0.00 34.14 3.85
568 584 2.191375 CTCGCAGGCATGGTGGAT 59.809 61.111 0.00 0.00 0.00 3.41
600 617 2.241685 TCTAACCCTAGCTCCTTCTCGT 59.758 50.000 0.00 0.00 0.00 4.18
601 618 2.882137 CTCTAACCCTAGCTCCTTCTCG 59.118 54.545 0.00 0.00 0.00 4.04
631 648 1.832167 GCTTGGTTTGGCTGGGTCA 60.832 57.895 0.00 0.00 0.00 4.02
646 663 1.478510 ACAAGTCCATCTCGATCGCTT 59.521 47.619 11.09 3.04 0.00 4.68
685 702 1.660575 CGCCTATTAGGTGCCGACG 60.661 63.158 10.26 1.06 39.28 5.12
689 706 2.281553 GCCCGCCTATTAGGTGCC 60.282 66.667 16.46 7.01 44.40 5.01
708 725 2.750350 AGGGAAACTGACCAGCGG 59.250 61.111 0.00 0.00 0.00 5.52
739 756 2.309528 ATTGAGCTGATCCGCGTTTA 57.690 45.000 4.92 0.00 34.40 2.01
740 757 1.453155 AATTGAGCTGATCCGCGTTT 58.547 45.000 4.92 0.00 34.40 3.60
747 764 2.523015 CGGCAACAAATTGAGCTGATC 58.477 47.619 15.11 0.00 38.15 2.92
756 773 1.812571 CTAGGAGTGCGGCAACAAATT 59.187 47.619 3.23 0.00 0.00 1.82
788 806 8.247562 TGACACTACTTTGCATTTTGTTTACTT 58.752 29.630 0.00 0.00 0.00 2.24
790 808 7.979115 TGACACTACTTTGCATTTTGTTTAC 57.021 32.000 0.00 0.00 0.00 2.01
794 812 7.711846 TGTATTGACACTACTTTGCATTTTGT 58.288 30.769 4.78 0.00 0.00 2.83
800 818 8.046708 AGGATAATGTATTGACACTACTTTGCA 58.953 33.333 11.89 0.00 38.76 4.08
840 858 9.812347 TCATATTAGTTTACGGAGGGAGTATTA 57.188 33.333 0.00 0.00 0.00 0.98
841 859 8.716674 TCATATTAGTTTACGGAGGGAGTATT 57.283 34.615 0.00 0.00 0.00 1.89
842 860 8.583296 GTTCATATTAGTTTACGGAGGGAGTAT 58.417 37.037 0.00 0.00 0.00 2.12
843 861 7.560991 TGTTCATATTAGTTTACGGAGGGAGTA 59.439 37.037 0.00 0.00 0.00 2.59
844 862 6.381994 TGTTCATATTAGTTTACGGAGGGAGT 59.618 38.462 0.00 0.00 0.00 3.85
845 863 6.700520 GTGTTCATATTAGTTTACGGAGGGAG 59.299 42.308 0.00 0.00 0.00 4.30
846 864 6.381994 AGTGTTCATATTAGTTTACGGAGGGA 59.618 38.462 0.00 0.00 0.00 4.20
847 865 6.579865 AGTGTTCATATTAGTTTACGGAGGG 58.420 40.000 0.00 0.00 0.00 4.30
848 866 7.490000 AGAGTGTTCATATTAGTTTACGGAGG 58.510 38.462 0.00 0.00 0.00 4.30
849 867 8.928270 AAGAGTGTTCATATTAGTTTACGGAG 57.072 34.615 0.00 0.00 0.00 4.63
877 895 9.448587 ACATTGGTACCCTCTCTATAAACTAAT 57.551 33.333 10.07 0.00 0.00 1.73
878 896 8.701895 CACATTGGTACCCTCTCTATAAACTAA 58.298 37.037 10.07 0.00 0.00 2.24
879 897 7.201974 GCACATTGGTACCCTCTCTATAAACTA 60.202 40.741 10.07 0.00 0.00 2.24
880 898 6.408206 GCACATTGGTACCCTCTCTATAAACT 60.408 42.308 10.07 0.00 0.00 2.66
881 899 5.758784 GCACATTGGTACCCTCTCTATAAAC 59.241 44.000 10.07 0.00 0.00 2.01
882 900 5.427157 TGCACATTGGTACCCTCTCTATAAA 59.573 40.000 10.07 0.00 0.00 1.40
883 901 4.966168 TGCACATTGGTACCCTCTCTATAA 59.034 41.667 10.07 0.00 0.00 0.98
884 902 4.552674 TGCACATTGGTACCCTCTCTATA 58.447 43.478 10.07 0.00 0.00 1.31
885 903 3.384168 TGCACATTGGTACCCTCTCTAT 58.616 45.455 10.07 0.00 0.00 1.98
886 904 2.827755 TGCACATTGGTACCCTCTCTA 58.172 47.619 10.07 0.00 0.00 2.43
887 905 1.656587 TGCACATTGGTACCCTCTCT 58.343 50.000 10.07 0.00 0.00 3.10
888 906 2.489938 TTGCACATTGGTACCCTCTC 57.510 50.000 10.07 0.00 0.00 3.20
889 907 3.456380 AATTGCACATTGGTACCCTCT 57.544 42.857 10.07 0.00 0.00 3.69
890 908 4.142249 GGTTAATTGCACATTGGTACCCTC 60.142 45.833 10.07 0.00 0.00 4.30
891 909 3.767131 GGTTAATTGCACATTGGTACCCT 59.233 43.478 10.07 0.00 0.00 4.34
892 910 3.118920 GGGTTAATTGCACATTGGTACCC 60.119 47.826 10.07 16.21 36.26 3.69
893 911 3.118920 GGGGTTAATTGCACATTGGTACC 60.119 47.826 4.43 4.43 0.00 3.34
894 912 3.767131 AGGGGTTAATTGCACATTGGTAC 59.233 43.478 0.00 0.00 0.00 3.34
938 956 7.967908 AGGAGATGACTATGGGTATTTAGTTG 58.032 38.462 0.00 0.00 0.00 3.16
942 960 6.875469 AGGAGGAGATGACTATGGGTATTTA 58.125 40.000 0.00 0.00 0.00 1.40
957 975 2.322543 AGGGGAAGGTAAAGGAGGAGAT 59.677 50.000 0.00 0.00 0.00 2.75
1251 1272 2.282958 TTGAGGCCGAGGACGAGT 60.283 61.111 0.00 0.00 42.66 4.18
1281 1302 2.063378 GGAGGAGGAGGAGTGGCAG 61.063 68.421 0.00 0.00 0.00 4.85
1285 1306 1.287739 AGAAGAGGAGGAGGAGGAGTG 59.712 57.143 0.00 0.00 0.00 3.51
1286 1307 1.569072 GAGAAGAGGAGGAGGAGGAGT 59.431 57.143 0.00 0.00 0.00 3.85
1303 1324 5.472478 TCGCTTATCGCTAAGATTAAGGAGA 59.528 40.000 10.13 0.00 40.66 3.71
1305 1326 5.458891 GTCGCTTATCGCTAAGATTAAGGA 58.541 41.667 10.13 0.00 40.66 3.36
1306 1327 4.321217 CGTCGCTTATCGCTAAGATTAAGG 59.679 45.833 10.13 0.00 40.66 2.69
1307 1328 5.145059 TCGTCGCTTATCGCTAAGATTAAG 58.855 41.667 10.13 0.00 40.66 1.85
1310 1331 3.003482 ACTCGTCGCTTATCGCTAAGATT 59.997 43.478 10.13 0.00 40.66 2.40
1311 1332 2.548904 ACTCGTCGCTTATCGCTAAGAT 59.451 45.455 10.13 0.00 43.19 2.40
1345 1366 4.573201 ACGAGAAAGGAACGAAATCAACAA 59.427 37.500 0.00 0.00 0.00 2.83
1348 1369 4.084745 CGAACGAGAAAGGAACGAAATCAA 60.085 41.667 0.00 0.00 0.00 2.57
1396 1417 0.250166 GTACCGTTTCCAGCACACCT 60.250 55.000 0.00 0.00 0.00 4.00
1418 1439 2.552315 GAGAGGATACGAGAGCAAGGAG 59.448 54.545 0.00 0.00 46.39 3.69
1432 1453 6.131972 TCCAAAACTTGATCAAGAGAGGAT 57.868 37.500 36.15 14.41 40.79 3.24
1521 1544 3.220110 TCGCTAGTTGGATAGGGTGTAG 58.780 50.000 0.00 0.00 37.11 2.74
1567 1598 5.173774 TGTTCAAGCTCACAAACTGAATC 57.826 39.130 0.00 0.00 0.00 2.52
1579 1610 4.574828 TGACCAGTTAGTTTGTTCAAGCTC 59.425 41.667 5.27 0.00 0.00 4.09
1581 1612 4.893424 TGACCAGTTAGTTTGTTCAAGC 57.107 40.909 0.00 0.00 0.00 4.01
1582 1613 6.347402 CCGTATGACCAGTTAGTTTGTTCAAG 60.347 42.308 0.00 0.00 0.00 3.02
1598 1629 4.211794 TCGTTTTGTTTCTTCCGTATGACC 59.788 41.667 0.00 0.00 0.00 4.02
1709 1766 3.145228 GCAGTCTGCAGGTAGGAAC 57.855 57.895 20.16 3.09 44.26 3.62
1800 1857 2.417257 CGACCACCCCGTTATCCGA 61.417 63.158 0.00 0.00 39.56 4.55
1955 2013 2.412847 CGCCGAAAGACAAAATGGAGAC 60.413 50.000 0.00 0.00 0.00 3.36
1959 2017 1.401018 GGTCGCCGAAAGACAAAATGG 60.401 52.381 0.00 0.00 40.20 3.16
1976 2036 1.205893 AGCGGATTGTCAGAAGAGGTC 59.794 52.381 0.00 0.00 0.00 3.85
2075 2135 3.598299 ACAAATGCACATAATGTTGGGC 58.402 40.909 0.00 0.00 46.47 5.36
2077 2137 5.163933 GCTTGACAAATGCACATAATGTTGG 60.164 40.000 0.00 0.00 0.00 3.77
2078 2138 5.405873 TGCTTGACAAATGCACATAATGTTG 59.594 36.000 0.00 0.00 0.00 3.33
2084 2150 4.424061 GTCTGCTTGACAAATGCACATA 57.576 40.909 0.00 0.00 44.73 2.29
2100 2166 0.248843 ACTCCAGCTAGCTTGTCTGC 59.751 55.000 16.46 0.00 0.00 4.26
2102 2168 3.578716 TGTAAACTCCAGCTAGCTTGTCT 59.421 43.478 16.46 3.96 0.00 3.41
2104 2170 3.665190 GTGTAAACTCCAGCTAGCTTGT 58.335 45.455 16.46 11.58 0.00 3.16
2109 2175 3.502920 CAGACGTGTAAACTCCAGCTAG 58.497 50.000 0.00 0.00 0.00 3.42
2111 2177 1.000955 CCAGACGTGTAAACTCCAGCT 59.999 52.381 0.00 0.00 0.00 4.24
2112 2178 1.429463 CCAGACGTGTAAACTCCAGC 58.571 55.000 0.00 0.00 0.00 4.85
2113 2179 1.939838 GCCCAGACGTGTAAACTCCAG 60.940 57.143 0.00 0.00 0.00 3.86
2114 2180 0.034337 GCCCAGACGTGTAAACTCCA 59.966 55.000 0.00 0.00 0.00 3.86
2116 2182 1.623973 GCGCCCAGACGTGTAAACTC 61.624 60.000 0.00 0.00 34.88 3.01
2117 2183 1.666872 GCGCCCAGACGTGTAAACT 60.667 57.895 0.00 0.00 34.88 2.66
2118 2184 1.666872 AGCGCCCAGACGTGTAAAC 60.667 57.895 2.29 0.00 34.88 2.01
2119 2185 1.666553 CAGCGCCCAGACGTGTAAA 60.667 57.895 2.29 0.00 34.88 2.01
2121 2187 1.972752 TACAGCGCCCAGACGTGTA 60.973 57.895 2.29 0.77 32.41 2.90
2122 2188 3.299977 TACAGCGCCCAGACGTGT 61.300 61.111 2.29 1.94 33.84 4.49
2123 2189 2.809601 GTACAGCGCCCAGACGTG 60.810 66.667 2.29 0.00 34.88 4.49
2124 2190 3.282745 CTGTACAGCGCCCAGACGT 62.283 63.158 10.54 0.00 34.88 4.34
2125 2191 2.507102 CTGTACAGCGCCCAGACG 60.507 66.667 10.54 0.00 0.00 4.18
2128 2194 0.602638 TTTGTCTGTACAGCGCCCAG 60.603 55.000 18.45 5.66 36.83 4.45
2144 2210 0.462759 GGAGAGGAGCCGTCCATTTG 60.463 60.000 6.20 0.00 46.80 2.32
2152 2218 2.203126 GGCAATGGAGAGGAGCCG 60.203 66.667 0.00 0.00 35.42 5.52
2154 2220 1.092345 GTTCGGCAATGGAGAGGAGC 61.092 60.000 0.00 0.00 0.00 4.70
2157 2223 0.036010 ACAGTTCGGCAATGGAGAGG 60.036 55.000 0.00 0.00 0.00 3.69
2188 2254 0.387239 TCATCGCCATCGTATGCTCG 60.387 55.000 0.00 0.00 36.96 5.03
2192 2258 6.265577 TCTAATACATCATCGCCATCGTATG 58.734 40.000 0.00 0.00 36.96 2.39
2221 2289 5.365619 ACAGGTCGAAAAATACAACTCTGT 58.634 37.500 0.00 0.00 39.75 3.41
2226 2294 5.048991 ACATGGACAGGTCGAAAAATACAAC 60.049 40.000 0.00 0.00 0.00 3.32
2233 2301 4.345859 ACTTACATGGACAGGTCGAAAA 57.654 40.909 0.00 0.00 0.00 2.29
2239 2307 5.104652 GGGTTGTATACTTACATGGACAGGT 60.105 44.000 4.17 0.00 38.12 4.00
2252 2320 6.101150 TGCCAGATGATTAAGGGTTGTATACT 59.899 38.462 4.17 0.00 0.00 2.12
2253 2321 6.296026 TGCCAGATGATTAAGGGTTGTATAC 58.704 40.000 0.00 0.00 0.00 1.47
2254 2322 6.508030 TGCCAGATGATTAAGGGTTGTATA 57.492 37.500 0.00 0.00 0.00 1.47
2255 2323 5.387113 TGCCAGATGATTAAGGGTTGTAT 57.613 39.130 0.00 0.00 0.00 2.29
2256 2324 4.853468 TGCCAGATGATTAAGGGTTGTA 57.147 40.909 0.00 0.00 0.00 2.41
2257 2325 3.737559 TGCCAGATGATTAAGGGTTGT 57.262 42.857 0.00 0.00 0.00 3.32
2258 2326 4.272489 TCTTGCCAGATGATTAAGGGTTG 58.728 43.478 0.00 0.00 0.00 3.77
2259 2327 4.591321 TCTTGCCAGATGATTAAGGGTT 57.409 40.909 0.00 0.00 0.00 4.11
2260 2328 4.166725 TGATCTTGCCAGATGATTAAGGGT 59.833 41.667 4.77 0.00 40.14 4.34
2261 2329 4.722220 TGATCTTGCCAGATGATTAAGGG 58.278 43.478 4.77 0.00 40.14 3.95
2275 2343 0.442310 TTGCGCGTAGTTGATCTTGC 59.558 50.000 8.43 0.00 0.00 4.01
2276 2344 2.537529 CCATTGCGCGTAGTTGATCTTG 60.538 50.000 8.43 0.00 0.00 3.02
2282 2350 1.060937 GAGCCATTGCGCGTAGTTG 59.939 57.895 8.43 5.05 44.33 3.16
2283 2351 2.106683 GGAGCCATTGCGCGTAGTT 61.107 57.895 8.43 0.00 44.33 2.24
2285 2353 2.511373 TGGAGCCATTGCGCGTAG 60.511 61.111 8.43 0.00 44.33 3.51
2290 2358 1.154225 GAAACGTGGAGCCATTGCG 60.154 57.895 0.00 0.00 44.33 4.85
2291 2359 1.212751 GGAAACGTGGAGCCATTGC 59.787 57.895 0.00 0.00 37.95 3.56
2293 2361 0.400213 TCAGGAAACGTGGAGCCATT 59.600 50.000 0.00 0.00 0.00 3.16
2342 2415 4.211374 AGTTGCAAATCTGACTCGTAACAC 59.789 41.667 0.00 0.00 0.00 3.32
2349 2422 4.781071 CTGAACAGTTGCAAATCTGACTC 58.219 43.478 20.45 15.94 35.84 3.36
2373 2496 1.636988 CGCGACCCGAAGATTTTAGT 58.363 50.000 0.00 0.00 40.02 2.24
2378 2501 2.509336 CAGCGCGACCCGAAGATT 60.509 61.111 12.10 0.00 40.02 2.40
2385 2508 3.573491 GGTATTGCAGCGCGACCC 61.573 66.667 12.10 0.00 0.00 4.46
2386 2509 2.813179 CTGGTATTGCAGCGCGACC 61.813 63.158 12.10 7.20 0.00 4.79
2403 2526 6.252599 TCTCTGTTGCCAATCATATAACCT 57.747 37.500 0.00 0.00 0.00 3.50
2415 2538 4.499865 GCGTATCTATCTTCTCTGTTGCCA 60.500 45.833 0.00 0.00 0.00 4.92
2462 2585 7.746034 GCTTCAGCTAAAACATTTTAATTTGGC 59.254 33.333 0.00 0.00 39.80 4.52
2489 2612 9.642343 TGGTATGTAATAGTACTGTCTTCAGAT 57.358 33.333 5.39 0.00 43.76 2.90
2496 2619 9.865321 TGACTTTTGGTATGTAATAGTACTGTC 57.135 33.333 5.39 0.00 0.00 3.51
2508 2631 9.905713 ATCATAAGTGTATGACTTTTGGTATGT 57.094 29.630 0.00 0.00 46.95 2.29
2543 2677 8.511321 TGAACACTTCATCATGGTTGTAATAAC 58.489 33.333 0.00 0.00 34.08 1.89
2557 2721 6.693113 GTGGTTTCTCTTTTGAACACTTCATC 59.307 38.462 0.00 0.00 39.84 2.92
2564 2728 6.887545 TCCTAAAGTGGTTTCTCTTTTGAACA 59.112 34.615 0.00 0.00 37.69 3.18
2588 2752 6.266323 TGTGTTTCGCTGAGTATCTAGAATC 58.734 40.000 0.00 0.00 34.92 2.52
2590 2754 5.183331 ACTGTGTTTCGCTGAGTATCTAGAA 59.817 40.000 0.00 0.00 34.92 2.10
2591 2755 4.700692 ACTGTGTTTCGCTGAGTATCTAGA 59.299 41.667 0.00 0.00 34.92 2.43
2613 2777 0.620556 TGGAGATGAAGCCCAGGAAC 59.379 55.000 0.00 0.00 0.00 3.62
2617 2781 2.641305 CTTCTTGGAGATGAAGCCCAG 58.359 52.381 0.00 0.00 34.21 4.45
2618 2782 1.283029 CCTTCTTGGAGATGAAGCCCA 59.717 52.381 0.00 0.00 38.55 5.36
2619 2783 1.561542 TCCTTCTTGGAGATGAAGCCC 59.438 52.381 0.00 0.00 40.56 5.19
2635 2802 6.466885 AGCTACAGTCATATAACGTTCCTT 57.533 37.500 2.82 0.00 0.00 3.36
2636 2803 6.127423 ACAAGCTACAGTCATATAACGTTCCT 60.127 38.462 2.82 0.00 0.00 3.36
2637 2804 6.040878 ACAAGCTACAGTCATATAACGTTCC 58.959 40.000 2.82 0.00 0.00 3.62
2638 2805 7.521509 AACAAGCTACAGTCATATAACGTTC 57.478 36.000 2.82 0.00 0.00 3.95
2639 2806 8.030692 TGTAACAAGCTACAGTCATATAACGTT 58.969 33.333 5.88 5.88 0.00 3.99
2640 2807 7.487189 GTGTAACAAGCTACAGTCATATAACGT 59.513 37.037 0.00 0.00 36.32 3.99
2641 2808 7.828604 GTGTAACAAGCTACAGTCATATAACG 58.171 38.462 0.00 0.00 36.32 3.18
2670 2837 3.713288 CGAATTCGGTAGCCAGATAACA 58.287 45.455 20.16 0.00 35.37 2.41
2691 2858 3.135530 AGCCCAATGAGAATGAGTACTCC 59.864 47.826 20.11 5.00 32.84 3.85
2718 2885 0.546122 ATATTGGAGAAGGTGCCGCA 59.454 50.000 0.00 0.00 0.00 5.69
2723 2890 3.390639 AGAGAGGCATATTGGAGAAGGTG 59.609 47.826 0.00 0.00 0.00 4.00
2761 2928 1.726533 GACGGGGACTCGAGACCATC 61.727 65.000 30.32 21.21 0.00 3.51
2814 2981 0.803768 CTGAGCGGATGACCAACGAG 60.804 60.000 0.00 0.00 35.59 4.18
2916 3083 2.391389 GCGTTCTCTTGGCTTCCCG 61.391 63.158 0.00 0.00 0.00 5.14
2958 3125 2.065993 ACACCGAAGAAGATGTCACG 57.934 50.000 0.00 0.00 0.00 4.35
2988 3155 1.900351 CTCCGAGCTGGTGGAATCA 59.100 57.895 0.00 0.00 39.52 2.57
3000 3167 0.107654 CCTTTGTTAGGCCCTCCGAG 60.108 60.000 0.00 0.00 37.17 4.63
3003 3170 1.835494 GTTCCTTTGTTAGGCCCTCC 58.165 55.000 0.00 0.00 44.37 4.30
3006 3173 1.268625 CAACGTTCCTTTGTTAGGCCC 59.731 52.381 0.00 0.00 44.37 5.80
3014 3181 8.844441 TTAAACTAATCAACAACGTTCCTTTG 57.156 30.769 0.00 2.55 0.00 2.77
3015 3182 7.646526 GCTTAAACTAATCAACAACGTTCCTTT 59.353 33.333 0.00 0.00 0.00 3.11
3016 3183 7.136772 GCTTAAACTAATCAACAACGTTCCTT 58.863 34.615 0.00 0.00 0.00 3.36
3023 3190 8.021396 CCTACTTGGCTTAAACTAATCAACAAC 58.979 37.037 0.00 0.00 0.00 3.32
3034 3201 8.736244 TGTGATTTATTCCTACTTGGCTTAAAC 58.264 33.333 0.00 0.00 35.26 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.