>input_sequence_61741
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------------------------------------------------------------ATGGCGTCCCTTCTCCGGCC
CGCCTCGTCGTGCCCCTCCTTTCGCCTCCCCTCCTCCACAGCCCCTGCACCTCCGCCGAGCCTCCTTTCCAGGCGGCACA
AGGCACCTCCCGTCCCACCCACGCCCCACACCCCTCCTTCCCGGCCCCGCGTCGCCGCCGCCGCAGCCTACGGAGGCGCC
CAGCTGCTGGGTCCCGTCGACACGCAGACATTCATCATCGCCGCCTCCGTCGTCGCCGCGGTCTCCCTGTCACTCGTCCT
CGGCCTCAAGGTCTCCGCGCGCTGCCACTCCTCCTCCTCCTCTTCTCCTTAATCTTAGCGATAAGCGACGAGTGGCTGTT
GCGAATTGTTGATTTCGTTCCTTTCTCGTTCGCAGGGGGACCCCGTTCCGTGCGACAGGTGTGCTGGAAACGGTACCTCT
CCTTGCTCTCGTATCCTCTCTTGATCAAGTTTTGGAAAATGAAATTGCTCCGCCTAGTGATGCATTGCTTCGCGA-TTGT
ACTAGAGCTGAAGCTT-GCACATCTACACCCTATCCAACTAGCGAT---GTATCATGA-----ATGGCCGATCTGTGGAT
TCAGTTTGTGAGCTTGAACAAACTAACTGGTCATACGGAAGAAACAAAACGAATGGAGCATATAAAATTCAACGAAGTTG
TTCGCTTTACAGTAATGTA------TTAT--------------------GGTTATGACATTTTGTGCATGTCGCACGCTC
AAAACGTTCCTACCTGCAGACTGCTAAGCATTGTTTTCCGTTGTGCCTAGGGCAGGAGGCACAAAGTGCGTCTTCTGCAA
TGACGGCAAGATGAAGTCGGATAACGGGGTGGTCGAATGCCGGGTATGCAGAGGAGCAGGTTGCCTTCTTACCTTGTTTC
ATTTCCTTCCTTCACATTGCGCATTGGAGTGCAAAAGCTGTTAATAGATCACCAAGCACTGATTCATTGTGGACTGGACA
AAATGCTCA-TTGTCTCCATTTTGTCTTT-C-GGCGACCTCTTCTGACAATCCGCTATATGTTTGTCACGCAGGGCTGAT
ACTCTGCAAGAAGTGCTCAGGTTCTGGTTACTCTAAGCGCTTGTAG----------------------------------
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>chr3B_1_TraesCS3B01G340900
ACACACGCGGGGCAAAAAGAGCTCGTGTGCGATCGGACGAGCCATCACAGACAATTATACAGGCCAAAACGTTTTCGTTC
GCACGTACATCACACACAATTTTTCCCATCAAATCATATGTGATAGCGTTGCCATTCCAGACGATATTAATAGTTTTATC
GTTGGTATTATTGAATGCATCACGCACGGTGCCTAGAAGAAACAATGTGGCATAGGTTGTCCATCACACAAACTTTTTAT
GTTGAAAACGTTTGCGCAAGGTGTTCTATTGATTTGCCATAATTTAACATTGTTATCTATCAATTCAAGACCTTGCTCTC
CATTGCTACCAATTACAATCAATTGTATATGAAGAACTAGGTGTGCATGATCTTAGTGAACCTCTTGTGGCCACCCAAAT
ATGCGCCAGTCTCGCCCACAGCGCCATTGACAACGTCGGCTCCAAGAAGTCGTTGTCGTCGTCGTCGCCAAAGCTAGCAT
AACTAGAGTAACAGCCACAGTCGATTCCTCCTCCTGATGCGCTACCAAACTCGTGAGGGTCTAAGTTGTCATTGTTG---
------------CCCGGAGTCACATCCACCA-TGCCTGCGAGCCGCGGGAGAAACAACGAGAAGGAGCTAGGGTTAGAGG
AGCGGTCTGACCCAGCCAAACCAAGCGATCGAGATGGACTTGTCCTACTCAGCGTTCGCCACGTCGGCACCTAATAGGCG
GGCCCCGCTGGTCAGTTTCCCTGTCAAAACTCGTTTAAACGCGGATCAGCTCAATTTGTTGCCGCACTCCT-AGACTTGA
TACTGAAGTAAACAAAATGCAAAGTAGTGTCAATACATTATCCTATCTATAATTATATAATACTCCCTCCGTAAACTAAT
ATGAACACTCTTATATTAGTTTATAGAGAGGGTACCAATGTGCAATTAACCCCTTTGGTCGAACTGGTTGGGGGCCAACT
AAATACCCATAGTCATCTCCTCCTTTACCTTCCCCTGTTGTTGCGCCCGGTG---CTTCCATGGCGTCCCTTCTCCGGCC
CGCCTCGTCGTGCCCCTCCTTTCGCCTCCCCTCCTCCACAGCCCCTGCACCTCCGCCGAGCCTCCTTTCCAGGCGGCACA
AGGCACCTCCCGTCCCACCCACGCCCCACACCCCTCCTTCCCGGCCCCGCGTCGCCGCCGCCGCAGCCTACGGAGGCGCC
CAGCTGCTGGGTCCCGTCGACACGCAGACATTCATCATCGCCGCCTCCGTCGTCGCCGCGGTCTCCCTGTCACTCGTCCT
CGGCCTCAAGGTCTCCGCGCGCTGCCACTCCTCCTCCTCCTCTTCTCCTTAATCTTAGCGATAAGCGACGAGTGGCTGTT
GCGAATTGTTGATTTCGTTCCTTTCTCGTTCGCAGGGGGACCCCGTTCCGTGCGACAGGTGTGCTGGAAACGGTACCTCT
CCTTGCTCTCGTATCCTCTCTTGATCAAGTTTTGGAAAATGAAATTGCTCCGCCTAGTGATGCATTGCTTCGCGA-TTGT
ACTAGAGCTGAAGCTT-GCACATCTACACCCTATCCAACTAGCGAT---GTATCATGA-----ATGGCCGATCTGTGGAT
TCAGTTTGTGAGCTTGAACAAACTAACTGGTCATACGGAAGAAACAAAACGAATGGAGCATATAAAATTCAACGAAGTTG
TTCGCTTTACAGTAATGTA------TTAT--------------------GGTTATGACATTTTGTGCATGTCGCACGCTC
AAAACGTTCCTACCTGCAGACTGCTAAGCATTGTTTTCCGTTGTGCCTAGGGCAGGAGGCACAAAGTGCGTCTTCTGCAA
TGACGGCAAGATGAAGTCGGATAACGGGGTGGTCGAATGCCGGGTATGCAGAGGAGCAGGTTGCCTTCTTACCTTGTTTC
ATTTCCTTCCTTCACATTGCGCATTGGAGTGCAAAAGCTGTTAATAGATCACCAAGCACTGATTCATTGTGGACTGGACA
AAATGCTCA-TTGTCTCCATTTTGTCTTT-C-GGCGACCTCTTCTGACAATCCGCTATATGTTTGTCACGCAGGGCTGAT
ACTCTGCAAGAAGTGCTCAGGTTCTGGTTACTCTAAGCGCTTGTAGCCCCAGCTGCCC------AACATTATGTGCATTT
GTCAAGCAGACAAGCTAGCTGGAGTTTACACGTCTGGGCGCTGTACAGACAAATGGACGGCTCCTCTCCATTGCCGAACT
GTTTAGATAGATACGAGC--ATACGATGGCGATGATGTATTAGAATATACAGAGTTGTATTTTTCGACCTGTCCATGTAA
GTATACAACCCTTAATCATCTGGCAAGATCAACTACGCGCAATGGCTCCACGTTTCCTGATTAGTCCATGTTTTTATAA-
----ACCAAAACTGGTGTTACGAGTCAGATTT------------------------------------------------
--GCAACTGTTCAGCACTAAAATCTTCGGGTCGCGCTGCAATACCAGGTTATATGATTGGCAACAGAGAAGATAGATACG
CTACGCTTCGCAGCATAATTCCATGCCAAATTAAAATGTTTTAGCTGAAGCATCTGAAGACAGTACTATTACAT------
-----ACCAAAAGTCATACACTTATGATAGTTGCAGGT------------------------------TATTACAACCAT
GATGAAGTGTTCAAAAGAGAAACCACTTTAGGATTCTAGATACTCAGCGAAACACAGTTCCTGGGCTTCATCTC---CAA
GAAGGAACGTTATATGACTGTAGCTTGTTACACATCTGTTATCTGGCTACCGAATTCGGAGTACTCATTCTCATTGGGCT
TCTTTGCGGCACCTTCTCCAATATGCCTCTCTGCAGGTTGCCTAGGAGATGGTCTCGAGTCCCCGTCATGAATGGTTGGA
AATCCAAAAGATTTGAAGAACTCGTTGGTCATCCGCTCAGCTTCATCCAGAAAGCTACCGAAGCCTTTCTCAATAGCTTC
TATGTCACTGCGAAGTCCTGGAAATGCAAAGGGCTCTTTTGTCGGGAAGCCAAGAGAACGCGAGGCACCACCGGTCATTT
CATCCGTGACATCTTCTTCGGTGTTCTCAGTTTTTGATTCCACCAGCTCGGAGGGCCTAACAAAGGAACGTTGTTGATTA
GTTTA----AGCCAAGTAGGAATAAATCACATAAGTA
>chr3D_269
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----------------------------TTGATTTGCTATAATTTAACATTGTTATCTATCAATTCAAGACATTGTTCTC
CATCGCTATCAATTACAACCAATTGTATATGAAGAACCAGTTGTGTATGACCTCAGTGAACCTCTTGTGGCCACCCAAAT
CTGCGCCAGCCTTGCCCGTTGTGCCATGGACAACGTCGACTCCAAGAACTCGTCGTCATCTCTGCAGT------TAGCAT
AACTAGAGTAACCGCCACCGTCGATTCCTCCTCCTGCTGCGTTACCAAACCTATGAGGGTCTAAGCTGTCATCGCAGCCA
CCGGCAACGCCACCCAGAGTCACCTCCACCATTGCGTGCGAGCCGCGGGAGAAACAGTGAGAAGGAGCTAGGGTTAGAGG
AGCGGTCCGACCCAGCCAAACCGAGCGACCGAACTGGACTTGTCCTAGTCAGCGTTCGCCATGTCAGCACCTGATAGGCG
GGCCTCGCTGGTCAGTTTCCCTGTCAAAACTCGTTAGAACGCGAATCAGCTCGATTTGTTGCCGCACTCCCCAGACTTGA
TACTGGAATAAGCAAAACGTAAAGTAGTGCCAATACATTATCCTAGCTACAATTAT------------------------
------------------------------------------------ACCCCTTTGGTCGAACTGGTTGGGGGCAAACC
AAATACCCATAGTCCTCTCCTCCTTTACCTTCCCCCGTTGTTGCGCCCGGTG---CTTCCATGGCGTCCCATCTCCGGCC
CGCCTCGTCGTGCCCCTCCTTTCGCCTCCCCTCCTCCACAGCCTCTGCACCTCCGCCGAGCCTCCTTTCCAGGCGGCAAA
AGGCACCTCCCGCCCCACCCACGCCCCACGCCCCTCCTTCCCGGCCCCGCGTCGCCGCCGCCGCGGCCTACGGAGGCGCC
CAGCTGCTGGGTCCCGTCGACACGCAGACATTCATCATCGCCGCCTCCGTCGTTACCGCGGTTTCCTTGTCCCTCGTCCT
CGGCCTCAAGGTCTCCGCGCGGTGC--CTCCTCCTCCTCCTCTCCCTGTT--TCTTAGCGATAAGCGACGAGTGGCTGTT
GCGAAGTG-TGATTTCGTTCCTTTCTCGTTCGCAGGGGGACCCCGTTCCGTGCGACCGGTGTGCTGGAAACGGTACCTTT
CCTTGCTCTCGTCTCCTCTCTTGATCAAGTTTTGG-AAATGAAATTGCTCCGCA----GATGCATTGCTTGGCGA-TTGT
ACTAGAGCTGAAGCTTTGCACACTTACACCCTATCCAGCTAGCGATGTAGTATCATGA-----ATTGCCGATCTGTGAAT
TCAGTTTGTAAATTTGAACAAACTAACTAGTCATACGGAAGAAACAAAACGAATGGAGCATATAAA-TTCAACGAAGTTG
TTCGTTTAACAGCACAGTAATGTATTTAT--------------------GGTTATGACATTTTGTGCATGTCGCACGCTC
AAAACATACCTGCGTGCAGACTGCTAAGCATTGTTTTCCGTTGTGCCTAGGGCAGGAGGCACAAAGTGCGTCTTCTGCAA
TGACGGCAAGATGAAGGCGGATAACGGGGTGGTTGAATGCAGGGTATGCAGAGGAGCAGGTTGCCTTCTTACCTTGTTTC
ATTTCCTTCCTTCACATTGTGCATTGGAGTGCAAAAGCTGTTAATAGATCACCAAACACTAATTCATTCTGGACTGGACA
AAATGCTCA-TTATCTTCATTTTGTCTTT-CCGGCAACCTCTTCTGACAATCCGCTATATGTTTGTCACGCAGGGCTGAT
ACTCTGCAAGAAGTGCTCAGGTTCTGGTTACTCTAAGCGCTTGTAGCCCCAGCCCCAGCTACAGAACATCATGTGCATTT
GTCAACCGGGCAAGTTGCGAGTTTAT-----GTGTGGGCGCTGTACAGATAAATGGAGGACT-CTCTCCATTGCCGAACT
GTTTAGATAGATATGAGTATATACGATGGCGATGATGTATTAGAATATGCAGAATTGTATGTTTCGCCCTGTCCATGTAT
ACCCGT---CCTTAATCTTCTGATAAGATATAGTACGTACGATGGCTCCACGTCCCCTGTTTAGTTCATGTTTTTATACT
ATGTACCAAAACTGATGTTACCAGTCAGATTTATCAATGTTGCAACTTTTGCAGCCCTAAGATCTTCAGATTTATCGATG
TTGCAACTGTTCAGCCCTAAGATCTTCATGTCGCACTGCAATACCTGGTTATATGATAGGCAACAGAGAAGATAGATACA
-----CTTCGCACCACAATTCCATCCCAAATTAAAATGTTTTAGCTGAAGCGTCTGAAAACAGTACTATACATAATGCCC
ATACAACCAAAAGTCATACACTTATGATAGTTGCAGATAAAATTAGTAAAATATGATTCTTCATCGCCTATTACAACCAT
AATGAAGAGTTCAAAAGAGAAACCACTTTAGTACCCTAGATACCCAGTGAAACACACTTCTCTGGCTTCAGCTC---CAA
GGCAT---GTTATATGACTGTAGCTTGTTACACATCGGTTATCTGGCTACCGAATTCTGAGTACTCATTCTCATTGGGCT
TCTTCGCAGTACCTTCCCCAATATGCCTCTCTGCAGGTTGCCTAGGAAATGGTCTCGAGTCCCCGTCATGAATGGGTGGA
AATCCAAAAGATTTGAAGAATTCGTTGGTCATCCGCTCAGCTTCATCCAGAAAGCTACCGAAGCCTTTCTCAATAGCTTC
TATGTCACTGCGAAGTCCTGGAAATGCAAAGGGCTCTTTTGTTGGGAAGCCAAGAGAACGCGAGGCACCACCGGTCATTT
CATCTGTGACATCTTCTTCGGTGTTCTCAGTTTTCGACTCCACCAGTTCAGAAGGCCTAATGGAGGAACATTGTGGGTTA
ATTCAGATCAGCCAAGTAGGAATAAAGCACATGAGTA
>chr3A_896
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--------------------------------TACCAATGTGCAATTAACCCCTTTGGTCGAACGGGTTGGGGGCAAACC
AAATACCCAGAGTCCTCTCCTCCTTTACCTTCCCCCGTTGTTGCGCCCGGTGCTTCTTCCATGGCGTCCCTTCTCCGGCC
CGCCTCGTCGTGCCCCTCCTTTCGCCTACCCTCCTCCACAGCCTCTGCACCTCCGCCAAGCCTCCTTTCCAGGCGGCACA
AGGCACCTCTCTTCCCACCCACGCCCCACGCCCCTCCTTCCCGGCCCCGCGTCGCCGCCGCAGCAGCCTACGGAGGCGCC
CAGCTGCTGGGTCCGGTCGACACGCAGACATTCATCATCGCCGCCTCCGTCGTCGCCGCGGTCTCACTGTCTCTCGTCCT
CGGCCTTAAGGTCTCCGCGCCGTGC--C------TCCTCCTCTCTCTGTT--TCTTAGCGATAAGCGACGAGTGGCTGTT
GCGAAGTG-TGATTTCGTTTCCTTCTCGTTCGCAGGGTGACCCTGTTCCGTGCGACCGGTGTGCTGGAAATGGTAC----
--TTCCTCTCGTCTCTTCTCTTGATC-AGTTTTGG-AAATGAAATTGCTCCGCA----GATGCATTGCTTCGCGATTTGT
ACTAGAGCTGAAGCTTTGCACATTTACACCCTATCCAACTAGTGAT---GTACTGTATCATCTATGGCCAATCTGTGACT
TCAGTTTGTAAATTTGAACAAACTAACTAGTCATACGGAAGAAACAAAACGAATGGAGCATATAAAATTCAACTAAGTTG
TTCGTTTTACCGTAATGTA------TTATGGTTATGACATTTTGTGCGAGGTTATGACATTTTGTGCATGTCGCAC--TC
AAAACATTCGTACGGGCAGACTGCTAAGCATTGTTTTCCGTTGTGCCTAGGGCAGGGGGCACAAAGTGCGTCTTCTGCAA
TGACGGCAAGATGAAGGCGGATAACGGGGTGGTCGAATGCCGGGTATGCAGGGGAGCAGGTTGCCTTCTTACCTTGTTTC
ATTTCCTTCCTTCACATTGCGCATTGGAGTGCAAAAGCTGTTAATAGATCACCAAGCACTGATTCATTGTGAACTGGAAA
AAATGCTCAATTATCTTCATTTCGTCTTCCC-GGTTACCTCTTCTGACAATCCGCTATATGTTTGTCACGCAGGGCTGAT
ACTCTGCAAGAAGTGCTCAGGTTCTGGTTACTCTAAGCGCTTGTAGCCCCAGCCCCAGCTACAGAACATCATGTGCATTT
GTCAACCGGGCAAGTTGCGAGTTTAT-----GTGTGGGCGC--------------------------------------T
GTTTAGATAGATATGAGTATATACGATGGCGATGATGTATTAGAATATGCAGAATTGTATGTTTCGCCCTGTCCATGTAT
ACCCGT---CCTTAATCATCTGATAAGATATAGTACGTACGATGGCTCCACGTCCCCTGTTTAGTTCATGTTTTTATACC
ATGTAGCAAAACTGATGTTACCAGTCAGGTTTATCAATGTTGCAACTTTTGCAGCCCTGAGATCTTCAGATTTATCCATG
TTACAACTGTTCAGCCCTAAGATCTTCATGTCGCGCTGCAATACCTGGTTATATGATAGGCAACAGAGAAGATAGATACA
-----CTTCGCAGCACAATTCCATCTCAAATTAAAATGTTTTAGCTGAAGCGTCTGAAAACAGTACTATACATAATGCCC
ATACAACCAAAAGTCATACACTTATGATAGTTGCAGATAAAATTAGTAAAATATGATTCTTCATCGACAATTACAACCAT
AATGAAGAGTTCAAAAGAGAAACCACTTTAGTACCCTAGATACCCAGCGAAACACACTTCTCAGGCTTCAGCTCCAACAA
GGCAT---GTTATACGACTGTAGCTTGTTACACATCAGTTATCTGGCTACCGAATTCTGAGTACTCATTCTCATTGGGCT
TCTTCGCGGTACCTTCTCCAACATGCCTCTCTGCAGGTTGCCTAGGAAACGGTCTCGAGTCCCCGTCGTGAATGGTTGGA
AATCCAAAAGATTTGAAGAATTCGTTGGTCATCCGCTCAGCTTCATCCAGAAAGCTACCGAAGCCTTTCTCAATAGCTTC
AATGTCACTGCGAAGTCCTGGAAATGCAAAGGGCTCTTTTGTTGGGAAGCCAAGAGAATGCGAGGCACCACCGGTCATTT
CATCTGTGACATCTTCTTCGGTGTTCTCAGTTTTCGACTCCACCAGTTCAGAAGGCCTAATGGAGGAACATTGTGGTTTA
ATTCAGATAAGCCACGAAGGAATAAAGCACAT-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---------------------------------S---S----
---S----S---------S------------------S--S----S----S--S--------------------------
S--------S--S----SSS-S-----S----------S---------S----S---S--SSS-SS-SSSSSSS------
------------S-----S-----------------S----S--------SSS------------S------S-SS----
---------------S-------S-----------S--------------------SS----------------------
-------S--------------S-----S---SS-------------S-------------S---S------S-------
----S------------------------------SS------S--------S-----------------S---------
-----S-S---S-----S-S---------S---------------S---S------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------S---S
--------------S--------------------S--------------------------------------------
-------------------------------------------S------------------------------------
-----------------------------S--------------------------------------------------
-----------------------------------------------------------------------S--------
---------------------S---SS----------------S-SSS--SS----------------------------
-----S--S-----------------------------------------------S---------------------S-
------------S----------------------S-----------------SSSSS----------------------
-----------------------S-----------------------------------------------------S--
---------S-SS---------------S---------------------------------------------------
----S---------------------------------------------------------------------------
-----S-------S------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
------------S---S------------------S--------------------------------------------
-----------------------------------------------------SS-SS-----------S----------
-----S-S-S----S-SSSS-SSSS-SSSSS--S---------------S-------S-S--S-----------------
-------------S---S------------------------------S----S------S-----S------------S
SSSSSSSSS-------------SS-----SS-S----SS-S------------SS----S-----S------------S-
--------------S------S----------------------------------------------------------
---------------S----S------SS----------------S-----------S---------------------S
SSSSS----------S--------S--------------------------S------S----------SSSSS------
------------------------------------S-------------------------------------------
S------S-----------------------S-SS--------S------------S---SSS-------S---------
-SSSSSSS----------------------------S--------------------S----------------------
----S----S-------------------------------------S--------------------------------
--------------------S-----------------------------------------------------------
------------------------------------------S-------------------------------------
----S-----------------------------S--S--------S--S--S-------SSS------S----S-S---
S--S----------------------S-----S----
>forward_98
------------------------------------------------------------------------------TC
GCACGTACATCACACACA--------------------------------------------------------------
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>reverse_1417
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--------------------------------------------------------AGGTGTGCTGGAAACGGTAC----
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>forward_264
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----AAAACGTTTGCGCAAGGTGT--------------------------------------------------------
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>reverse_2180
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-------------------TGGAGTTTACACGTCTGGGC-----------------------------------------
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