Multiple sequence alignment - TraesCS3B01G336800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G336800 chr3B 100.000 2796 0 0 1 2796 542747289 542750084 0.000000e+00 5164.0
1 TraesCS3B01G336800 chr3B 83.903 497 63 7 1391 1880 542809691 542810177 2.540000e-125 459.0
2 TraesCS3B01G336800 chr3B 91.026 234 18 2 2102 2332 542810179 542810412 2.090000e-81 313.0
3 TraesCS3B01G336800 chr3B 85.772 246 32 1 1380 1625 542929947 542930189 9.940000e-65 257.0
4 TraesCS3B01G336800 chr3B 85.795 176 21 3 1102 1277 543093487 543093658 1.710000e-42 183.0
5 TraesCS3B01G336800 chr3B 79.078 282 30 13 25 306 418825686 418825434 1.720000e-37 167.0
6 TraesCS3B01G336800 chr3B 90.265 113 8 2 2102 2214 543068270 543068379 8.070000e-31 145.0
7 TraesCS3B01G336800 chr3B 87.692 130 7 3 633 757 543187735 543187860 2.900000e-30 143.0
8 TraesCS3B01G336800 chr7D 90.575 1061 46 19 866 1885 6445140 6446187 0.000000e+00 1356.0
9 TraesCS3B01G336800 chr7D 95.150 701 29 4 2099 2796 6446184 6446882 0.000000e+00 1101.0
10 TraesCS3B01G336800 chr7D 96.180 445 12 2 307 751 6444606 6445045 0.000000e+00 723.0
11 TraesCS3B01G336800 chr3A 91.020 902 37 16 867 1725 534167214 534166314 0.000000e+00 1177.0
12 TraesCS3B01G336800 chr3A 84.866 522 55 11 1380 1888 534161697 534161187 3.210000e-139 505.0
13 TraesCS3B01G336800 chr3A 99.119 227 1 1 1877 2102 149722512 149722738 9.320000e-110 407.0
14 TraesCS3B01G336800 chr3A 89.568 278 5 7 307 580 534167705 534167448 5.770000e-87 331.0
15 TraesCS3B01G336800 chr3A 84.014 294 44 1 1380 1673 533994771 533994481 2.120000e-71 279.0
16 TraesCS3B01G336800 chr3A 95.395 152 6 1 606 757 534167453 534167303 1.000000e-59 241.0
17 TraesCS3B01G336800 chr3A 94.215 121 4 2 2099 2216 534166205 534166085 6.150000e-42 182.0
18 TraesCS3B01G336800 chr3A 94.872 117 2 2 1773 1885 534166318 534166202 2.210000e-41 180.0
19 TraesCS3B01G336800 chr3A 92.308 117 7 2 633 749 533992119 533992005 6.200000e-37 165.0
20 TraesCS3B01G336800 chr3A 85.833 120 8 6 2102 2217 533994314 533994200 4.890000e-23 119.0
21 TraesCS3B01G336800 chr3D 91.631 705 47 6 2099 2796 416484042 416484741 0.000000e+00 965.0
22 TraesCS3B01G336800 chr3D 82.490 514 65 12 1380 1885 416937017 416936521 7.160000e-116 427.0
23 TraesCS3B01G336800 chr3D 82.704 503 64 12 1380 1879 416989466 416989948 2.570000e-115 425.0
24 TraesCS3B01G336800 chr3D 83.297 461 51 14 1380 1823 416562592 416563043 4.340000e-108 401.0
25 TraesCS3B01G336800 chr3D 90.196 306 28 1 1 306 416219611 416219914 5.610000e-107 398.0
26 TraesCS3B01G336800 chr3D 82.432 444 43 15 1388 1827 416483622 416484034 3.430000e-94 355.0
27 TraesCS3B01G336800 chr3D 85.460 337 30 12 923 1242 416482618 416482952 1.600000e-87 333.0
28 TraesCS3B01G336800 chr3D 91.500 200 8 2 444 643 416404968 416405158 1.650000e-67 267.0
29 TraesCS3B01G336800 chr3D 91.371 197 11 3 551 747 416482288 416482478 5.940000e-67 265.0
30 TraesCS3B01G336800 chr3D 91.429 175 13 2 923 1097 416427094 416427266 3.600000e-59 239.0
31 TraesCS3B01G336800 chr3D 93.243 148 10 0 2102 2249 416563178 416563325 4.690000e-53 219.0
32 TraesCS3B01G336800 chr3D 86.932 176 20 2 1102 1277 416934997 416935169 7.900000e-46 195.0
33 TraesCS3B01G336800 chr3D 91.071 112 6 2 633 744 416988697 416988804 6.240000e-32 148.0
34 TraesCS3B01G336800 chr3D 90.265 113 8 2 2102 2214 416952396 416952505 8.070000e-31 145.0
35 TraesCS3B01G336800 chr3D 91.753 97 4 3 1108 1203 416928933 416928840 6.280000e-27 132.0
36 TraesCS3B01G336800 chr3D 93.182 88 6 0 1790 1877 416563086 416563173 2.260000e-26 130.0
37 TraesCS3B01G336800 chr3D 89.691 97 6 1 1790 1882 416576296 416576392 1.360000e-23 121.0
38 TraesCS3B01G336800 chr3D 94.286 70 2 1 2145 2214 416936518 416936451 3.810000e-19 106.0
39 TraesCS3B01G336800 chr3D 90.123 81 3 3 1303 1378 416483505 416483585 1.770000e-17 100.0
40 TraesCS3B01G336800 chr3D 90.541 74 3 2 478 547 416481903 416481976 8.240000e-16 95.3
41 TraesCS3B01G336800 chr3D 100.000 32 0 0 866 897 416427051 416427082 3.010000e-05 60.2
42 TraesCS3B01G336800 chr7B 100.000 225 0 0 1880 2104 23409672 23409448 1.550000e-112 416.0
43 TraesCS3B01G336800 chr1B 100.000 222 0 0 1881 2102 561755452 561755673 7.210000e-111 411.0
44 TraesCS3B01G336800 chr1B 90.756 119 11 0 182 300 282081776 282081658 2.880000e-35 159.0
45 TraesCS3B01G336800 chr1B 90.756 119 11 0 182 300 282106103 282105985 2.880000e-35 159.0
46 TraesCS3B01G336800 chr4D 99.554 224 1 0 1881 2104 3719611 3719834 2.590000e-110 409.0
47 TraesCS3B01G336800 chr4D 99.554 224 1 0 1880 2103 428942850 428943073 2.590000e-110 409.0
48 TraesCS3B01G336800 chr1A 100.000 221 0 0 1882 2102 532321506 532321286 2.590000e-110 409.0
49 TraesCS3B01G336800 chr4A 99.111 225 2 0 1879 2103 584459865 584460089 3.350000e-109 405.0
50 TraesCS3B01G336800 chr2B 97.881 236 1 4 1869 2102 730561406 730561173 3.350000e-109 405.0
51 TraesCS3B01G336800 chr6A 98.253 229 3 1 1874 2102 552834525 552834752 1.560000e-107 399.0
52 TraesCS3B01G336800 chr5A 87.255 306 28 5 1 306 560724400 560724694 3.450000e-89 339.0
53 TraesCS3B01G336800 chr5A 81.796 412 52 13 1380 1781 536970994 536971392 9.660000e-85 324.0
54 TraesCS3B01G336800 chr5A 96.875 32 1 0 2119 2150 536971668 536971699 1.000000e-03 54.7
55 TraesCS3B01G336800 chr2A 84.549 233 23 7 1 232 655544353 655544133 4.690000e-53 219.0
56 TraesCS3B01G336800 chr2A 78.618 304 36 12 3 306 87458113 87458387 1.030000e-39 174.0
57 TraesCS3B01G336800 chr1D 78.964 309 35 13 1 306 64151675 64151956 1.710000e-42 183.0
58 TraesCS3B01G336800 chr1D 78.502 307 36 11 1 306 431188546 431188269 1.030000e-39 174.0
59 TraesCS3B01G336800 chr6D 78.105 306 38 10 1 306 113591714 113591990 1.720000e-37 167.0
60 TraesCS3B01G336800 chr5B 81.081 74 9 4 569 638 38590198 38590270 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G336800 chr3B 542747289 542750084 2795 False 5164.000000 5164 100.000000 1 2796 1 chr3B.!!$F1 2795
1 TraesCS3B01G336800 chr3B 542809691 542810412 721 False 386.000000 459 87.464500 1391 2332 2 chr3B.!!$F6 941
2 TraesCS3B01G336800 chr7D 6444606 6446882 2276 False 1060.000000 1356 93.968333 307 2796 3 chr7D.!!$F1 2489
3 TraesCS3B01G336800 chr3A 534161187 534161697 510 True 505.000000 505 84.866000 1380 1888 1 chr3A.!!$R1 508
4 TraesCS3B01G336800 chr3A 534166085 534167705 1620 True 422.200000 1177 93.014000 307 2216 5 chr3A.!!$R3 1909
5 TraesCS3B01G336800 chr3D 416481903 416484741 2838 False 352.216667 965 88.593000 478 2796 6 chr3D.!!$F7 2318
6 TraesCS3B01G336800 chr3D 416988697 416989948 1251 False 286.500000 425 86.887500 633 1879 2 chr3D.!!$F9 1246
7 TraesCS3B01G336800 chr3D 416936451 416937017 566 True 266.500000 427 88.388000 1380 2214 2 chr3D.!!$R2 834
8 TraesCS3B01G336800 chr3D 416562592 416563325 733 False 250.000000 401 89.907333 1380 2249 3 chr3D.!!$F8 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.031043 TACACCGAACCTGTCACGTG 59.969 55.0 9.94 9.94 34.01 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 3202 0.104304 CAAATACTCCCTCCGTCCGG 59.896 60.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.737180 AGGGTGCAGACGACACAG 59.263 61.111 0.00 0.00 39.87 3.66
18 19 2.357517 GGGTGCAGACGACACAGG 60.358 66.667 0.00 0.00 39.87 4.00
19 20 2.734591 GGTGCAGACGACACAGGA 59.265 61.111 0.00 0.00 39.87 3.86
20 21 1.373497 GGTGCAGACGACACAGGAG 60.373 63.158 0.00 0.00 39.87 3.69
21 22 2.024319 GTGCAGACGACACAGGAGC 61.024 63.158 0.00 0.00 37.96 4.70
22 23 2.340078 GCAGACGACACAGGAGCA 59.660 61.111 0.00 0.00 0.00 4.26
23 24 1.735920 GCAGACGACACAGGAGCAG 60.736 63.158 0.00 0.00 0.00 4.24
24 25 1.735920 CAGACGACACAGGAGCAGC 60.736 63.158 0.00 0.00 0.00 5.25
25 26 2.433318 GACGACACAGGAGCAGCC 60.433 66.667 0.00 0.00 0.00 4.85
26 27 3.226429 GACGACACAGGAGCAGCCA 62.226 63.158 0.00 0.00 40.02 4.75
27 28 2.433838 CGACACAGGAGCAGCCAG 60.434 66.667 0.00 0.00 40.02 4.85
28 29 2.935740 CGACACAGGAGCAGCCAGA 61.936 63.158 0.00 0.00 40.02 3.86
29 30 1.601171 GACACAGGAGCAGCCAGAT 59.399 57.895 0.00 0.00 40.02 2.90
30 31 0.461693 GACACAGGAGCAGCCAGATC 60.462 60.000 0.00 0.00 40.02 2.75
31 32 0.908656 ACACAGGAGCAGCCAGATCT 60.909 55.000 0.00 0.00 40.02 2.75
32 33 0.462225 CACAGGAGCAGCCAGATCTG 60.462 60.000 16.24 16.24 40.02 2.90
49 50 3.331002 TGGCGAAACCAGCATGTAA 57.669 47.368 0.00 0.00 46.36 2.41
50 51 1.832883 TGGCGAAACCAGCATGTAAT 58.167 45.000 0.00 0.00 46.36 1.89
51 52 1.742831 TGGCGAAACCAGCATGTAATC 59.257 47.619 0.00 0.00 46.36 1.75
52 53 2.017049 GGCGAAACCAGCATGTAATCT 58.983 47.619 0.00 0.00 38.86 2.40
53 54 2.423538 GGCGAAACCAGCATGTAATCTT 59.576 45.455 0.00 0.00 38.86 2.40
54 55 3.487544 GGCGAAACCAGCATGTAATCTTC 60.488 47.826 0.00 0.00 38.86 2.87
55 56 3.375299 GCGAAACCAGCATGTAATCTTCT 59.625 43.478 0.00 0.00 34.19 2.85
56 57 4.142600 GCGAAACCAGCATGTAATCTTCTT 60.143 41.667 0.00 0.00 34.19 2.52
57 58 5.064707 GCGAAACCAGCATGTAATCTTCTTA 59.935 40.000 0.00 0.00 34.19 2.10
58 59 6.238484 GCGAAACCAGCATGTAATCTTCTTAT 60.238 38.462 0.00 0.00 34.19 1.73
59 60 7.128331 CGAAACCAGCATGTAATCTTCTTATG 58.872 38.462 0.00 0.00 0.00 1.90
60 61 7.011389 CGAAACCAGCATGTAATCTTCTTATGA 59.989 37.037 0.00 0.00 0.00 2.15
61 62 8.579850 AAACCAGCATGTAATCTTCTTATGAA 57.420 30.769 0.00 0.00 0.00 2.57
62 63 8.757982 AACCAGCATGTAATCTTCTTATGAAT 57.242 30.769 0.00 0.00 0.00 2.57
63 64 8.388484 ACCAGCATGTAATCTTCTTATGAATC 57.612 34.615 0.00 0.00 0.00 2.52
64 65 7.994911 ACCAGCATGTAATCTTCTTATGAATCA 59.005 33.333 0.00 0.00 0.00 2.57
65 66 8.843262 CCAGCATGTAATCTTCTTATGAATCAA 58.157 33.333 0.00 0.00 0.00 2.57
66 67 9.661187 CAGCATGTAATCTTCTTATGAATCAAC 57.339 33.333 0.00 0.00 0.00 3.18
67 68 9.624373 AGCATGTAATCTTCTTATGAATCAACT 57.376 29.630 0.00 0.00 0.00 3.16
74 75 8.961294 ATCTTCTTATGAATCAACTTCAGAGG 57.039 34.615 0.00 0.00 46.71 3.69
75 76 8.138928 TCTTCTTATGAATCAACTTCAGAGGA 57.861 34.615 0.00 0.00 46.71 3.71
76 77 8.766476 TCTTCTTATGAATCAACTTCAGAGGAT 58.234 33.333 0.00 0.00 46.71 3.24
77 78 8.728337 TTCTTATGAATCAACTTCAGAGGATG 57.272 34.615 0.00 0.00 46.71 3.51
78 79 7.855375 TCTTATGAATCAACTTCAGAGGATGT 58.145 34.615 0.00 0.00 46.71 3.06
79 80 8.981659 TCTTATGAATCAACTTCAGAGGATGTA 58.018 33.333 0.00 0.00 46.71 2.29
80 81 9.775854 CTTATGAATCAACTTCAGAGGATGTAT 57.224 33.333 0.00 0.00 46.71 2.29
83 84 9.941325 ATGAATCAACTTCAGAGGATGTATATC 57.059 33.333 0.00 0.00 46.71 1.63
84 85 8.927411 TGAATCAACTTCAGAGGATGTATATCA 58.073 33.333 1.63 0.00 38.97 2.15
85 86 9.421806 GAATCAACTTCAGAGGATGTATATCAG 57.578 37.037 1.63 0.00 33.01 2.90
86 87 7.904558 TCAACTTCAGAGGATGTATATCAGT 57.095 36.000 1.63 0.00 34.90 3.41
87 88 8.311395 TCAACTTCAGAGGATGTATATCAGTT 57.689 34.615 1.63 0.00 34.90 3.16
88 89 8.762645 TCAACTTCAGAGGATGTATATCAGTTT 58.237 33.333 1.63 0.00 34.90 2.66
89 90 9.388506 CAACTTCAGAGGATGTATATCAGTTTT 57.611 33.333 1.63 0.00 34.90 2.43
120 121 8.609617 TGACATATCATTAGGTAATAGGAGGG 57.390 38.462 0.00 0.00 0.00 4.30
121 122 8.184249 TGACATATCATTAGGTAATAGGAGGGT 58.816 37.037 0.00 0.00 0.00 4.34
122 123 8.380742 ACATATCATTAGGTAATAGGAGGGTG 57.619 38.462 0.00 0.00 0.00 4.61
123 124 5.763876 ATCATTAGGTAATAGGAGGGTGC 57.236 43.478 0.00 0.00 0.00 5.01
124 125 3.908103 TCATTAGGTAATAGGAGGGTGCC 59.092 47.826 0.00 0.00 0.00 5.01
125 126 3.424724 TTAGGTAATAGGAGGGTGCCA 57.575 47.619 0.00 0.00 0.00 4.92
126 127 2.280308 AGGTAATAGGAGGGTGCCAA 57.720 50.000 0.00 0.00 0.00 4.52
127 128 1.844497 AGGTAATAGGAGGGTGCCAAC 59.156 52.381 0.00 0.00 0.00 3.77
128 129 1.133884 GGTAATAGGAGGGTGCCAACC 60.134 57.143 0.00 0.00 46.81 3.77
136 137 4.413928 GGTGCCAACCAGTGCATA 57.586 55.556 0.00 0.00 46.75 3.14
137 138 2.886382 GGTGCCAACCAGTGCATAT 58.114 52.632 0.00 0.00 46.75 1.78
138 139 0.740737 GGTGCCAACCAGTGCATATC 59.259 55.000 0.00 0.00 46.75 1.63
139 140 1.462616 GTGCCAACCAGTGCATATCA 58.537 50.000 0.00 0.00 40.07 2.15
140 141 2.026641 GTGCCAACCAGTGCATATCAT 58.973 47.619 0.00 0.00 40.07 2.45
141 142 2.428171 GTGCCAACCAGTGCATATCATT 59.572 45.455 0.00 0.00 40.07 2.57
142 143 3.098377 TGCCAACCAGTGCATATCATTT 58.902 40.909 0.00 0.00 31.31 2.32
143 144 3.514706 TGCCAACCAGTGCATATCATTTT 59.485 39.130 0.00 0.00 31.31 1.82
144 145 4.020396 TGCCAACCAGTGCATATCATTTTT 60.020 37.500 0.00 0.00 31.31 1.94
145 146 5.186603 TGCCAACCAGTGCATATCATTTTTA 59.813 36.000 0.00 0.00 31.31 1.52
146 147 5.519927 GCCAACCAGTGCATATCATTTTTAC 59.480 40.000 0.00 0.00 0.00 2.01
147 148 6.629128 CCAACCAGTGCATATCATTTTTACA 58.371 36.000 0.00 0.00 0.00 2.41
148 149 7.267128 CCAACCAGTGCATATCATTTTTACAT 58.733 34.615 0.00 0.00 0.00 2.29
149 150 8.412456 CCAACCAGTGCATATCATTTTTACATA 58.588 33.333 0.00 0.00 0.00 2.29
150 151 9.970395 CAACCAGTGCATATCATTTTTACATAT 57.030 29.630 0.00 0.00 0.00 1.78
151 152 9.970395 AACCAGTGCATATCATTTTTACATATG 57.030 29.630 0.00 0.00 34.75 1.78
152 153 9.353431 ACCAGTGCATATCATTTTTACATATGA 57.647 29.630 10.38 0.00 33.86 2.15
153 154 9.616634 CCAGTGCATATCATTTTTACATATGAC 57.383 33.333 10.38 0.00 33.86 3.06
154 155 9.321590 CAGTGCATATCATTTTTACATATGACG 57.678 33.333 10.38 0.00 33.86 4.35
155 156 8.506437 AGTGCATATCATTTTTACATATGACGG 58.494 33.333 10.38 0.00 33.86 4.79
156 157 8.289618 GTGCATATCATTTTTACATATGACGGT 58.710 33.333 10.38 0.00 33.86 4.83
157 158 9.495572 TGCATATCATTTTTACATATGACGGTA 57.504 29.630 10.38 0.00 33.86 4.02
158 159 9.755064 GCATATCATTTTTACATATGACGGTAC 57.245 33.333 10.38 0.00 33.86 3.34
161 162 7.542534 TCATTTTTACATATGACGGTACACC 57.457 36.000 10.38 0.00 0.00 4.16
172 173 3.206090 GGTACACCGAACCTGTCAC 57.794 57.895 0.00 0.00 33.97 3.67
173 174 0.665369 GGTACACCGAACCTGTCACG 60.665 60.000 0.00 0.00 33.97 4.35
174 175 0.031178 GTACACCGAACCTGTCACGT 59.969 55.000 0.00 0.00 0.00 4.49
175 176 0.031043 TACACCGAACCTGTCACGTG 59.969 55.000 9.94 9.94 34.01 4.49
176 177 1.227147 CACCGAACCTGTCACGTGT 60.227 57.895 16.51 0.00 0.00 4.49
177 178 1.227147 ACCGAACCTGTCACGTGTG 60.227 57.895 16.51 7.18 0.00 3.82
178 179 1.066752 CCGAACCTGTCACGTGTGA 59.933 57.895 16.51 0.00 37.24 3.58
179 180 0.528901 CCGAACCTGTCACGTGTGAA 60.529 55.000 16.51 1.39 41.85 3.18
180 181 1.497991 CGAACCTGTCACGTGTGAAT 58.502 50.000 16.51 0.00 41.85 2.57
181 182 1.864711 CGAACCTGTCACGTGTGAATT 59.135 47.619 16.51 5.06 41.85 2.17
182 183 2.348498 CGAACCTGTCACGTGTGAATTG 60.348 50.000 16.51 3.43 41.85 2.32
183 184 1.593196 ACCTGTCACGTGTGAATTGG 58.407 50.000 16.51 12.25 41.85 3.16
184 185 0.874390 CCTGTCACGTGTGAATTGGG 59.126 55.000 16.51 5.85 41.85 4.12
185 186 1.593196 CTGTCACGTGTGAATTGGGT 58.407 50.000 16.51 0.00 41.85 4.51
186 187 1.531149 CTGTCACGTGTGAATTGGGTC 59.469 52.381 16.51 0.00 41.85 4.46
187 188 1.134371 TGTCACGTGTGAATTGGGTCA 60.134 47.619 16.51 0.00 41.85 4.02
188 189 1.944024 GTCACGTGTGAATTGGGTCAA 59.056 47.619 16.51 0.00 41.85 3.18
189 190 2.552315 GTCACGTGTGAATTGGGTCAAT 59.448 45.455 16.51 0.00 41.85 2.57
190 191 2.551887 TCACGTGTGAATTGGGTCAATG 59.448 45.455 16.51 0.00 36.53 2.82
191 192 2.293122 CACGTGTGAATTGGGTCAATGT 59.707 45.455 7.58 0.00 34.04 2.71
192 193 2.955660 ACGTGTGAATTGGGTCAATGTT 59.044 40.909 0.00 0.00 34.04 2.71
193 194 3.243367 ACGTGTGAATTGGGTCAATGTTG 60.243 43.478 0.00 0.00 34.04 3.33
194 195 3.652274 GTGTGAATTGGGTCAATGTTGG 58.348 45.455 0.00 0.00 34.04 3.77
195 196 2.036992 TGTGAATTGGGTCAATGTTGGC 59.963 45.455 0.00 0.00 34.04 4.52
196 197 2.299867 GTGAATTGGGTCAATGTTGGCT 59.700 45.455 0.00 0.00 34.04 4.75
197 198 3.509575 GTGAATTGGGTCAATGTTGGCTA 59.490 43.478 0.00 0.00 34.04 3.93
198 199 4.160252 GTGAATTGGGTCAATGTTGGCTAT 59.840 41.667 0.00 0.00 34.04 2.97
199 200 5.359576 GTGAATTGGGTCAATGTTGGCTATA 59.640 40.000 0.00 0.00 34.04 1.31
200 201 6.040842 GTGAATTGGGTCAATGTTGGCTATAT 59.959 38.462 0.00 0.00 34.04 0.86
201 202 6.610830 TGAATTGGGTCAATGTTGGCTATATT 59.389 34.615 0.00 0.00 34.04 1.28
202 203 5.850557 TTGGGTCAATGTTGGCTATATTG 57.149 39.130 11.09 11.09 32.28 1.90
203 204 3.636300 TGGGTCAATGTTGGCTATATTGC 59.364 43.478 12.19 0.00 33.10 3.56
204 205 8.146124 ATTGGGTCAATGTTGGCTATATTGCC 62.146 42.308 19.85 19.85 41.75 4.52
220 221 8.462016 GCTATATTGCCTTTTTATGTAGGATGG 58.538 37.037 0.00 0.00 33.13 3.51
221 222 5.535753 ATTGCCTTTTTATGTAGGATGGC 57.464 39.130 0.00 0.00 39.53 4.40
222 223 2.948979 TGCCTTTTTATGTAGGATGGCG 59.051 45.455 0.00 0.00 41.73 5.69
223 224 2.949644 GCCTTTTTATGTAGGATGGCGT 59.050 45.455 0.00 0.00 33.13 5.68
224 225 4.131596 GCCTTTTTATGTAGGATGGCGTA 58.868 43.478 0.00 0.00 33.13 4.42
225 226 4.024302 GCCTTTTTATGTAGGATGGCGTAC 60.024 45.833 0.00 0.00 36.25 3.67
226 227 4.210537 CCTTTTTATGTAGGATGGCGTACG 59.789 45.833 11.84 11.84 38.01 3.67
227 228 3.374220 TTTATGTAGGATGGCGTACGG 57.626 47.619 18.39 0.00 38.01 4.02
228 229 1.985473 TATGTAGGATGGCGTACGGT 58.015 50.000 18.39 0.00 38.01 4.83
229 230 1.985473 ATGTAGGATGGCGTACGGTA 58.015 50.000 18.39 0.00 38.01 4.02
230 231 1.761449 TGTAGGATGGCGTACGGTAA 58.239 50.000 18.39 0.00 38.01 2.85
231 232 1.405105 TGTAGGATGGCGTACGGTAAC 59.595 52.381 18.39 0.00 38.01 2.50
248 249 4.928601 GGTAACGTAGTGCATCTACATCA 58.071 43.478 19.59 6.88 45.00 3.07
249 250 5.529791 GGTAACGTAGTGCATCTACATCAT 58.470 41.667 19.59 9.50 45.00 2.45
250 251 5.402568 GGTAACGTAGTGCATCTACATCATG 59.597 44.000 19.59 10.00 45.00 3.07
251 252 3.982475 ACGTAGTGCATCTACATCATGG 58.018 45.455 19.59 9.52 46.66 3.66
252 253 2.733552 CGTAGTGCATCTACATCATGGC 59.266 50.000 19.59 0.00 46.66 4.40
253 254 1.875009 AGTGCATCTACATCATGGCG 58.125 50.000 0.00 0.00 0.00 5.69
254 255 0.870393 GTGCATCTACATCATGGCGG 59.130 55.000 0.00 0.00 0.00 6.13
255 256 0.886043 TGCATCTACATCATGGCGGC 60.886 55.000 0.00 0.00 0.00 6.53
256 257 1.904852 GCATCTACATCATGGCGGCG 61.905 60.000 0.51 0.51 0.00 6.46
257 258 1.669115 ATCTACATCATGGCGGCGC 60.669 57.895 26.17 26.17 0.00 6.53
258 259 2.104572 ATCTACATCATGGCGGCGCT 62.105 55.000 32.30 10.36 0.00 5.92
259 260 2.280119 TACATCATGGCGGCGCTC 60.280 61.111 32.30 21.54 0.00 5.03
260 261 2.705934 CTACATCATGGCGGCGCTCT 62.706 60.000 32.30 16.37 0.00 4.09
261 262 2.310327 TACATCATGGCGGCGCTCTT 62.310 55.000 32.30 16.40 0.00 2.85
262 263 1.595109 CATCATGGCGGCGCTCTTA 60.595 57.895 32.30 15.48 0.00 2.10
263 264 1.146041 ATCATGGCGGCGCTCTTAA 59.854 52.632 32.30 13.98 0.00 1.85
264 265 1.160329 ATCATGGCGGCGCTCTTAAC 61.160 55.000 32.30 14.37 0.00 2.01
265 266 2.106074 CATGGCGGCGCTCTTAACA 61.106 57.895 32.30 19.94 0.00 2.41
266 267 1.153168 ATGGCGGCGCTCTTAACAT 60.153 52.632 32.30 21.33 0.00 2.71
267 268 1.160329 ATGGCGGCGCTCTTAACATC 61.160 55.000 32.30 11.99 0.00 3.06
268 269 2.534903 GGCGGCGCTCTTAACATCC 61.535 63.158 32.30 6.78 0.00 3.51
269 270 1.813753 GCGGCGCTCTTAACATCCA 60.814 57.895 26.86 0.00 0.00 3.41
270 271 1.366111 GCGGCGCTCTTAACATCCAA 61.366 55.000 26.86 0.00 0.00 3.53
271 272 0.373716 CGGCGCTCTTAACATCCAAC 59.626 55.000 7.64 0.00 0.00 3.77
272 273 0.733150 GGCGCTCTTAACATCCAACC 59.267 55.000 7.64 0.00 0.00 3.77
273 274 1.679032 GGCGCTCTTAACATCCAACCT 60.679 52.381 7.64 0.00 0.00 3.50
274 275 2.419574 GGCGCTCTTAACATCCAACCTA 60.420 50.000 7.64 0.00 0.00 3.08
275 276 2.866762 GCGCTCTTAACATCCAACCTAG 59.133 50.000 0.00 0.00 0.00 3.02
276 277 2.866762 CGCTCTTAACATCCAACCTAGC 59.133 50.000 0.00 0.00 0.00 3.42
277 278 3.678806 CGCTCTTAACATCCAACCTAGCA 60.679 47.826 0.00 0.00 0.00 3.49
278 279 3.873952 GCTCTTAACATCCAACCTAGCAG 59.126 47.826 0.00 0.00 0.00 4.24
279 280 3.873910 TCTTAACATCCAACCTAGCAGC 58.126 45.455 0.00 0.00 0.00 5.25
280 281 3.263170 TCTTAACATCCAACCTAGCAGCA 59.737 43.478 0.00 0.00 0.00 4.41
281 282 1.826385 AACATCCAACCTAGCAGCAC 58.174 50.000 0.00 0.00 0.00 4.40
282 283 0.035056 ACATCCAACCTAGCAGCACC 60.035 55.000 0.00 0.00 0.00 5.01
283 284 1.091771 CATCCAACCTAGCAGCACCG 61.092 60.000 0.00 0.00 0.00 4.94
284 285 2.257409 ATCCAACCTAGCAGCACCGG 62.257 60.000 0.00 0.00 0.00 5.28
285 286 2.347490 CAACCTAGCAGCACCGGT 59.653 61.111 0.00 0.00 0.00 5.28
286 287 2.034879 CAACCTAGCAGCACCGGTG 61.035 63.158 30.66 30.66 0.00 4.94
287 288 2.516888 AACCTAGCAGCACCGGTGT 61.517 57.895 33.92 18.91 33.19 4.16
288 289 2.434884 CCTAGCAGCACCGGTGTG 60.435 66.667 33.92 28.35 45.65 3.82
289 290 2.434884 CTAGCAGCACCGGTGTGG 60.435 66.667 33.92 26.01 42.99 4.17
290 291 2.920384 TAGCAGCACCGGTGTGGA 60.920 61.111 33.92 13.77 42.99 4.02
291 292 2.842394 CTAGCAGCACCGGTGTGGAG 62.842 65.000 33.92 21.58 42.99 3.86
292 293 4.626081 GCAGCACCGGTGTGGAGT 62.626 66.667 33.92 12.47 42.99 3.85
293 294 2.111043 CAGCACCGGTGTGGAGTT 59.889 61.111 33.92 11.55 42.99 3.01
294 295 1.525995 CAGCACCGGTGTGGAGTTT 60.526 57.895 33.92 9.86 42.99 2.66
295 296 1.525995 AGCACCGGTGTGGAGTTTG 60.526 57.895 33.92 7.53 42.99 2.93
296 297 1.822186 GCACCGGTGTGGAGTTTGT 60.822 57.895 33.92 0.00 42.99 2.83
297 298 2.021722 CACCGGTGTGGAGTTTGTG 58.978 57.895 26.95 0.00 42.00 3.33
298 299 0.462937 CACCGGTGTGGAGTTTGTGA 60.463 55.000 26.95 0.00 42.00 3.58
299 300 0.253610 ACCGGTGTGGAGTTTGTGAA 59.746 50.000 6.12 0.00 42.00 3.18
300 301 0.661020 CCGGTGTGGAGTTTGTGAAC 59.339 55.000 0.00 0.00 42.00 3.18
301 302 1.374560 CGGTGTGGAGTTTGTGAACA 58.625 50.000 0.00 0.00 38.26 3.18
302 303 1.063469 CGGTGTGGAGTTTGTGAACAC 59.937 52.381 0.00 0.00 40.28 3.32
303 304 2.844122 GTGTGGAGTTTGTGAACACC 57.156 50.000 2.46 0.00 44.07 4.16
304 305 1.404035 GTGTGGAGTTTGTGAACACCC 59.596 52.381 2.46 0.00 43.42 4.61
305 306 1.004862 TGTGGAGTTTGTGAACACCCA 59.995 47.619 2.46 0.00 43.42 4.51
311 312 3.942748 GAGTTTGTGAACACCCACTTGTA 59.057 43.478 2.46 0.00 38.26 2.41
396 397 8.767478 AACCAAAGATTCTCAGCAATAAATTG 57.233 30.769 0.00 0.00 40.66 2.32
425 426 4.099727 CAGAAGAGCTCCATCTCAATCAGA 59.900 45.833 10.93 0.00 35.59 3.27
435 436 3.969287 TCTCAATCAGAACCCAGTGAG 57.031 47.619 0.00 0.00 35.01 3.51
436 437 2.027745 TCTCAATCAGAACCCAGTGAGC 60.028 50.000 0.00 0.00 33.96 4.26
437 438 1.081892 CAATCAGAACCCAGTGAGCG 58.918 55.000 0.00 0.00 0.00 5.03
438 439 0.687354 AATCAGAACCCAGTGAGCGT 59.313 50.000 0.00 0.00 0.00 5.07
672 989 3.298619 CCTTTGTCATTGCCATGGGATA 58.701 45.455 15.13 2.02 0.00 2.59
673 990 3.319972 CCTTTGTCATTGCCATGGGATAG 59.680 47.826 15.13 6.49 0.00 2.08
674 991 3.949586 TTGTCATTGCCATGGGATAGA 57.050 42.857 15.13 8.98 0.00 1.98
675 992 3.213206 TGTCATTGCCATGGGATAGAC 57.787 47.619 23.26 23.26 0.00 2.59
756 1075 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
757 1076 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
758 1077 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
759 1078 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
760 1079 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
761 1080 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
762 1081 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
763 1082 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
764 1083 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
765 1084 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
766 1085 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
767 1086 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
768 1087 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
769 1088 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
770 1089 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
771 1090 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
772 1091 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
773 1092 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
774 1093 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
775 1094 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
776 1095 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
777 1096 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
778 1097 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
779 1098 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
780 1099 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
781 1100 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
782 1101 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
783 1102 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
784 1103 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
785 1104 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
786 1105 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
787 1106 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
788 1107 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
789 1108 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
790 1109 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
791 1110 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
792 1111 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
793 1112 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
794 1113 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
795 1114 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
796 1115 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
803 1122 1.091771 GTGTGTGTGTGTGCAGCTCT 61.092 55.000 0.00 0.00 0.00 4.09
805 1124 0.811219 GTGTGTGTGTGCAGCTCTGA 60.811 55.000 0.29 0.00 0.00 3.27
806 1125 0.531311 TGTGTGTGTGCAGCTCTGAG 60.531 55.000 0.00 0.00 0.00 3.35
809 1128 0.249615 GTGTGTGCAGCTCTGAGTGA 60.250 55.000 6.53 0.00 0.00 3.41
839 1158 0.248743 CACGTAGTCGGTGTGTGTGT 60.249 55.000 0.00 0.00 41.61 3.72
841 1160 0.248743 CGTAGTCGGTGTGTGTGTGT 60.249 55.000 0.00 0.00 0.00 3.72
842 1161 1.205657 GTAGTCGGTGTGTGTGTGTG 58.794 55.000 0.00 0.00 0.00 3.82
843 1162 0.818938 TAGTCGGTGTGTGTGTGTGT 59.181 50.000 0.00 0.00 0.00 3.72
848 1167 1.136565 GTGTGTGTGTGTGTGCACC 59.863 57.895 15.69 6.37 44.65 5.01
851 1170 1.024046 GTGTGTGTGTGTGCACCAGA 61.024 55.000 15.69 7.72 44.65 3.86
852 1171 1.024046 TGTGTGTGTGTGCACCAGAC 61.024 55.000 21.05 21.05 44.65 3.51
911 1264 1.287815 CCACCGTCGTTGTGCTCTA 59.712 57.895 0.00 0.00 32.30 2.43
947 1300 2.072298 CCTCTTCAGGAAAGAAGCACG 58.928 52.381 0.00 0.00 43.39 5.34
951 1304 0.603707 TCAGGAAAGAAGCACGCCAG 60.604 55.000 0.00 0.00 0.00 4.85
974 1331 1.741401 CGAACCTCGCTTGCATCCA 60.741 57.895 0.00 0.00 31.14 3.41
981 1338 2.338015 CGCTTGCATCCAACCAGCT 61.338 57.895 3.07 0.00 0.00 4.24
1006 1367 2.041819 GTCCCCTCCATCTCCGGT 60.042 66.667 0.00 0.00 0.00 5.28
1041 1408 4.956075 TGTGCTTTTCTTCTTCCTTCCTTT 59.044 37.500 0.00 0.00 0.00 3.11
1098 1496 0.393077 AACCTACGCTGTTGCTGAGT 59.607 50.000 0.00 0.00 36.97 3.41
1159 1560 4.404654 CTGAGCGCGGCCCAAAAC 62.405 66.667 8.83 0.00 0.00 2.43
1273 1674 4.760047 ACCCACCTCGCGTGCATC 62.760 66.667 5.77 0.00 41.53 3.91
1275 1676 4.758251 CCACCTCGCGTGCATCCA 62.758 66.667 5.77 0.00 41.53 3.41
1276 1677 3.190849 CACCTCGCGTGCATCCAG 61.191 66.667 5.77 0.00 35.18 3.86
1277 1678 3.381983 ACCTCGCGTGCATCCAGA 61.382 61.111 5.77 0.00 0.00 3.86
1386 2363 2.687610 ATTCTGCCCTGCCTCTGGG 61.688 63.158 4.60 4.60 44.16 4.45
1584 2561 2.600731 GATACATCTTCGGCTGGATCG 58.399 52.381 0.00 0.00 0.00 3.69
1599 2579 1.353076 GATCGTTTACACCGTGGTCC 58.647 55.000 3.03 0.00 0.00 4.46
1692 2683 0.921347 GTGCAGTACGCGGTCTATTG 59.079 55.000 12.47 1.94 46.97 1.90
1700 2695 0.460284 CGCGGTCTATTGGTTCAGCT 60.460 55.000 0.00 0.00 0.00 4.24
1701 2696 1.202371 CGCGGTCTATTGGTTCAGCTA 60.202 52.381 0.00 0.00 0.00 3.32
1702 2697 2.474816 GCGGTCTATTGGTTCAGCTAG 58.525 52.381 0.00 0.00 0.00 3.42
1703 2698 2.474816 CGGTCTATTGGTTCAGCTAGC 58.525 52.381 6.62 6.62 0.00 3.42
1704 2699 2.101582 CGGTCTATTGGTTCAGCTAGCT 59.898 50.000 12.68 12.68 0.00 3.32
1744 2753 0.904649 TCATGTCCGTGGATCAGCTT 59.095 50.000 0.00 0.00 0.00 3.74
1885 3001 9.217278 TGTTAATATCCAGATCGACTCTAGTAC 57.783 37.037 0.00 0.00 31.13 2.73
1886 3002 9.439500 GTTAATATCCAGATCGACTCTAGTACT 57.561 37.037 0.00 0.00 31.13 2.73
1889 3005 5.212532 TCCAGATCGACTCTAGTACTACC 57.787 47.826 0.00 0.00 31.13 3.18
1890 3006 4.900652 TCCAGATCGACTCTAGTACTACCT 59.099 45.833 0.00 0.00 31.13 3.08
1891 3007 5.010922 TCCAGATCGACTCTAGTACTACCTC 59.989 48.000 0.00 0.00 31.13 3.85
1892 3008 5.232463 CAGATCGACTCTAGTACTACCTCC 58.768 50.000 0.00 0.00 31.13 4.30
1893 3009 3.724508 TCGACTCTAGTACTACCTCCG 57.275 52.381 0.00 1.58 0.00 4.63
1894 3010 3.027412 TCGACTCTAGTACTACCTCCGT 58.973 50.000 0.00 0.00 0.00 4.69
1895 3011 3.067461 TCGACTCTAGTACTACCTCCGTC 59.933 52.174 0.00 1.30 0.00 4.79
1896 3012 3.727726 GACTCTAGTACTACCTCCGTCC 58.272 54.545 0.00 0.00 0.00 4.79
1897 3013 2.437651 ACTCTAGTACTACCTCCGTCCC 59.562 54.545 0.00 0.00 0.00 4.46
1898 3014 1.414181 TCTAGTACTACCTCCGTCCCG 59.586 57.143 0.00 0.00 0.00 5.14
1909 3025 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
1910 3026 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
1911 3027 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
1912 3028 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
1913 3029 3.378339 CGTCCCGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
1914 3030 3.378339 GTCCCGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
1915 3031 2.132762 CCCGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
1916 3032 1.784856 CCGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
1917 3033 2.456989 CGGTGTATAAGTCATTCGCGT 58.543 47.619 5.77 0.00 0.00 6.01
1918 3034 3.548616 CCGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
1919 3035 3.662645 CGGTGTATAAGTCATTCGCGTAG 59.337 47.826 5.77 0.00 0.00 3.51
1920 3036 4.604976 GGTGTATAAGTCATTCGCGTAGT 58.395 43.478 5.77 0.00 0.00 2.73
1921 3037 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
1922 3038 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
1923 3039 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
1924 3040 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
1925 3041 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
1926 3042 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
1927 3043 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
1928 3044 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
1929 3045 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
1930 3046 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
1931 3047 1.945387 TCGCGTAGTTCTAGGTCGAT 58.055 50.000 5.77 0.00 0.00 3.59
1932 3048 3.097877 TCGCGTAGTTCTAGGTCGATA 57.902 47.619 5.77 0.00 0.00 2.92
1933 3049 3.457234 TCGCGTAGTTCTAGGTCGATAA 58.543 45.455 5.77 0.00 0.00 1.75
1934 3050 4.060900 TCGCGTAGTTCTAGGTCGATAAT 58.939 43.478 5.77 0.00 0.00 1.28
1935 3051 4.512944 TCGCGTAGTTCTAGGTCGATAATT 59.487 41.667 5.77 0.00 0.00 1.40
1936 3052 5.008019 TCGCGTAGTTCTAGGTCGATAATTT 59.992 40.000 5.77 0.00 0.00 1.82
1937 3053 6.202762 TCGCGTAGTTCTAGGTCGATAATTTA 59.797 38.462 5.77 0.00 0.00 1.40
1938 3054 6.852853 CGCGTAGTTCTAGGTCGATAATTTAA 59.147 38.462 0.00 0.00 0.00 1.52
1939 3055 7.149224 CGCGTAGTTCTAGGTCGATAATTTAAC 60.149 40.741 0.00 0.00 0.00 2.01
1940 3056 7.859875 GCGTAGTTCTAGGTCGATAATTTAACT 59.140 37.037 0.00 0.00 0.00 2.24
1998 3114 9.706691 ATATATTTAGAAACTACATCCGTGTGG 57.293 33.333 0.00 0.00 42.04 4.17
2010 3126 2.253610 TCCGTGTGGAAATCTAGTGGT 58.746 47.619 0.00 0.00 42.85 4.16
2011 3127 3.433343 TCCGTGTGGAAATCTAGTGGTA 58.567 45.455 0.00 0.00 42.85 3.25
2012 3128 4.028131 TCCGTGTGGAAATCTAGTGGTAT 58.972 43.478 0.00 0.00 42.85 2.73
2013 3129 5.202765 TCCGTGTGGAAATCTAGTGGTATA 58.797 41.667 0.00 0.00 42.85 1.47
2014 3130 5.068198 TCCGTGTGGAAATCTAGTGGTATAC 59.932 44.000 0.00 0.00 42.85 1.47
2015 3131 5.068723 CCGTGTGGAAATCTAGTGGTATACT 59.931 44.000 2.25 0.00 39.66 2.12
2016 3132 6.406624 CCGTGTGGAAATCTAGTGGTATACTT 60.407 42.308 2.25 0.00 37.99 2.24
2017 3133 7.039882 CGTGTGGAAATCTAGTGGTATACTTT 58.960 38.462 2.25 0.00 40.89 2.66
2018 3134 7.548075 CGTGTGGAAATCTAGTGGTATACTTTT 59.452 37.037 2.25 0.00 40.89 2.27
2019 3135 8.880750 GTGTGGAAATCTAGTGGTATACTTTTC 58.119 37.037 2.25 0.00 40.89 2.29
2020 3136 8.598916 TGTGGAAATCTAGTGGTATACTTTTCA 58.401 33.333 2.25 0.00 40.89 2.69
2021 3137 9.614792 GTGGAAATCTAGTGGTATACTTTTCAT 57.385 33.333 2.25 0.00 40.89 2.57
2022 3138 9.613428 TGGAAATCTAGTGGTATACTTTTCATG 57.387 33.333 2.25 0.00 40.89 3.07
2023 3139 9.832445 GGAAATCTAGTGGTATACTTTTCATGA 57.168 33.333 2.25 0.00 40.89 3.07
2059 3175 9.831737 CATATTTAATTCCTCAAATCGATGACC 57.168 33.333 0.00 0.00 0.00 4.02
2060 3176 9.799106 ATATTTAATTCCTCAAATCGATGACCT 57.201 29.630 0.00 0.00 0.00 3.85
2062 3178 8.662781 TTTAATTCCTCAAATCGATGACCTAG 57.337 34.615 0.00 0.00 0.00 3.02
2063 3179 6.485830 AATTCCTCAAATCGATGACCTAGA 57.514 37.500 0.00 0.00 0.00 2.43
2064 3180 5.932619 TTCCTCAAATCGATGACCTAGAA 57.067 39.130 0.00 0.00 0.00 2.10
2065 3181 5.263968 TCCTCAAATCGATGACCTAGAAC 57.736 43.478 0.00 0.00 0.00 3.01
2066 3182 4.956700 TCCTCAAATCGATGACCTAGAACT 59.043 41.667 0.00 0.00 0.00 3.01
2067 3183 6.127101 TCCTCAAATCGATGACCTAGAACTA 58.873 40.000 0.00 0.00 0.00 2.24
2068 3184 6.039493 TCCTCAAATCGATGACCTAGAACTAC 59.961 42.308 0.00 0.00 0.00 2.73
2069 3185 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
2070 3186 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
2071 3187 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
2072 3188 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
2073 3189 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
2074 3190 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
2075 3191 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
2076 3192 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
2077 3193 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
2078 3194 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
2079 3195 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
2080 3196 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
2081 3197 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
2082 3198 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
2083 3199 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
2084 3200 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
2085 3201 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
2086 3202 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
2087 3203 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
2088 3204 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
2089 3205 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
2090 3206 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
2091 3207 3.378339 CGAATGACTTATACACCCGGAC 58.622 50.000 0.73 0.00 0.00 4.79
2092 3208 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
2093 3209 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
2094 3210 1.340893 TGACTTATACACCCGGACGGA 60.341 52.381 13.13 0.00 37.50 4.69
2095 3211 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
2096 3212 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
2157 3277 4.070716 CTGGATGGATTGTGGCTATCTTC 58.929 47.826 0.00 0.00 0.00 2.87
2260 3385 4.180496 GCTGCTGAAATTGCTGCC 57.820 55.556 12.39 0.00 45.39 4.85
2300 3428 6.596106 TGCTGCTTTGTATAATTCGACCTTTA 59.404 34.615 0.00 0.00 0.00 1.85
2312 3440 5.978934 TTCGACCTTTAAGTTTCACAGTC 57.021 39.130 0.00 0.00 0.00 3.51
2441 3569 1.679153 CCCCATTACAAATACGTGGGC 59.321 52.381 0.00 0.00 46.53 5.36
2551 3679 2.416747 CCCACCGATGTATACATGCAG 58.583 52.381 22.93 12.79 36.57 4.41
2599 3727 4.838986 TGGTCTAGACATAATTAGCTCCCC 59.161 45.833 23.91 2.44 0.00 4.81
2603 3731 4.984146 AGACATAATTAGCTCCCCTTCC 57.016 45.455 0.00 0.00 0.00 3.46
2606 3734 3.138468 ACATAATTAGCTCCCCTTCCCAC 59.862 47.826 0.00 0.00 0.00 4.61
2634 3762 2.158986 ACTCTGATTCGCTCCAAGGATG 60.159 50.000 0.00 0.00 0.00 3.51
2682 3810 1.265905 GAGGCCAACATTTTCGTCGTT 59.734 47.619 5.01 0.00 0.00 3.85
2704 3832 3.985279 TGTTCGTGAAGTAGATTGGTTCG 59.015 43.478 0.00 0.00 0.00 3.95
2711 3839 4.038763 TGAAGTAGATTGGTTCGCCGATAT 59.961 41.667 0.00 0.00 41.44 1.63
2754 3882 5.655090 TGAAGTAGATTGGTTCTCCGATACA 59.345 40.000 0.00 0.00 37.92 2.29
2767 3895 1.466866 CCGATACAGCTTTCGTCGTCA 60.467 52.381 9.01 0.00 33.60 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.737180 CTGTGTCGTCTGCACCCT 59.263 61.111 0.00 0.00 36.11 4.34
1 2 2.357517 CCTGTGTCGTCTGCACCC 60.358 66.667 0.00 0.00 36.11 4.61
2 3 1.373497 CTCCTGTGTCGTCTGCACC 60.373 63.158 0.00 0.00 36.11 5.01
3 4 2.024319 GCTCCTGTGTCGTCTGCAC 61.024 63.158 0.00 0.00 37.37 4.57
4 5 2.340078 GCTCCTGTGTCGTCTGCA 59.660 61.111 0.00 0.00 0.00 4.41
5 6 1.735920 CTGCTCCTGTGTCGTCTGC 60.736 63.158 0.00 0.00 0.00 4.26
6 7 1.735920 GCTGCTCCTGTGTCGTCTG 60.736 63.158 0.00 0.00 0.00 3.51
7 8 2.653702 GCTGCTCCTGTGTCGTCT 59.346 61.111 0.00 0.00 0.00 4.18
8 9 2.433318 GGCTGCTCCTGTGTCGTC 60.433 66.667 0.00 0.00 0.00 4.20
9 10 3.231889 CTGGCTGCTCCTGTGTCGT 62.232 63.158 0.00 0.00 35.26 4.34
10 11 2.236223 ATCTGGCTGCTCCTGTGTCG 62.236 60.000 0.00 0.00 35.49 4.35
11 12 0.461693 GATCTGGCTGCTCCTGTGTC 60.462 60.000 0.00 0.00 35.49 3.67
12 13 0.908656 AGATCTGGCTGCTCCTGTGT 60.909 55.000 0.00 0.00 35.49 3.72
13 14 0.462225 CAGATCTGGCTGCTCCTGTG 60.462 60.000 15.38 0.00 35.49 3.66
14 15 1.624479 CCAGATCTGGCTGCTCCTGT 61.624 60.000 28.45 0.00 44.73 4.00
15 16 1.146485 CCAGATCTGGCTGCTCCTG 59.854 63.158 28.45 2.08 44.73 3.86
16 17 3.644719 CCAGATCTGGCTGCTCCT 58.355 61.111 28.45 0.00 44.73 3.69
31 32 1.742831 GATTACATGCTGGTTTCGCCA 59.257 47.619 0.00 0.00 46.95 5.69
32 33 2.017049 AGATTACATGCTGGTTTCGCC 58.983 47.619 0.00 0.00 37.90 5.54
33 34 3.375299 AGAAGATTACATGCTGGTTTCGC 59.625 43.478 0.00 0.00 0.00 4.70
34 35 5.551760 AAGAAGATTACATGCTGGTTTCG 57.448 39.130 0.00 0.00 0.00 3.46
35 36 8.213518 TCATAAGAAGATTACATGCTGGTTTC 57.786 34.615 0.00 0.00 0.00 2.78
36 37 8.579850 TTCATAAGAAGATTACATGCTGGTTT 57.420 30.769 0.00 0.00 0.00 3.27
37 38 8.757982 ATTCATAAGAAGATTACATGCTGGTT 57.242 30.769 0.00 0.00 37.14 3.67
38 39 7.994911 TGATTCATAAGAAGATTACATGCTGGT 59.005 33.333 0.00 0.00 37.14 4.00
39 40 8.387190 TGATTCATAAGAAGATTACATGCTGG 57.613 34.615 0.00 0.00 37.14 4.85
40 41 9.661187 GTTGATTCATAAGAAGATTACATGCTG 57.339 33.333 0.00 0.00 37.14 4.41
41 42 9.624373 AGTTGATTCATAAGAAGATTACATGCT 57.376 29.630 0.00 0.00 37.14 3.79
48 49 9.393512 CCTCTGAAGTTGATTCATAAGAAGATT 57.606 33.333 0.00 0.00 46.71 2.40
49 50 8.766476 TCCTCTGAAGTTGATTCATAAGAAGAT 58.234 33.333 0.00 0.00 46.71 2.40
50 51 8.138928 TCCTCTGAAGTTGATTCATAAGAAGA 57.861 34.615 0.00 0.00 46.71 2.87
51 52 8.828644 CATCCTCTGAAGTTGATTCATAAGAAG 58.171 37.037 0.00 0.00 46.71 2.85
52 53 8.324306 ACATCCTCTGAAGTTGATTCATAAGAA 58.676 33.333 0.00 0.00 46.71 2.52
53 54 7.855375 ACATCCTCTGAAGTTGATTCATAAGA 58.145 34.615 0.00 0.00 46.71 2.10
54 55 9.775854 ATACATCCTCTGAAGTTGATTCATAAG 57.224 33.333 0.00 0.00 46.71 1.73
57 58 9.941325 GATATACATCCTCTGAAGTTGATTCAT 57.059 33.333 0.00 0.00 46.71 2.57
58 59 8.927411 TGATATACATCCTCTGAAGTTGATTCA 58.073 33.333 0.00 0.00 45.79 2.57
59 60 9.421806 CTGATATACATCCTCTGAAGTTGATTC 57.578 37.037 0.00 0.00 38.50 2.52
60 61 8.932610 ACTGATATACATCCTCTGAAGTTGATT 58.067 33.333 0.00 0.00 0.00 2.57
61 62 8.489676 ACTGATATACATCCTCTGAAGTTGAT 57.510 34.615 0.00 0.00 0.00 2.57
62 63 7.904558 ACTGATATACATCCTCTGAAGTTGA 57.095 36.000 0.00 0.00 0.00 3.18
63 64 8.954950 AAACTGATATACATCCTCTGAAGTTG 57.045 34.615 0.00 0.00 0.00 3.16
94 95 9.218525 CCCTCCTATTACCTAATGATATGTCAT 57.781 37.037 0.00 0.00 46.91 3.06
95 96 8.184249 ACCCTCCTATTACCTAATGATATGTCA 58.816 37.037 0.00 0.00 39.04 3.58
96 97 8.478877 CACCCTCCTATTACCTAATGATATGTC 58.521 40.741 0.00 0.00 0.00 3.06
97 98 7.092846 GCACCCTCCTATTACCTAATGATATGT 60.093 40.741 0.00 0.00 0.00 2.29
98 99 7.275920 GCACCCTCCTATTACCTAATGATATG 58.724 42.308 0.00 0.00 0.00 1.78
99 100 6.387220 GGCACCCTCCTATTACCTAATGATAT 59.613 42.308 0.00 0.00 0.00 1.63
100 101 5.724854 GGCACCCTCCTATTACCTAATGATA 59.275 44.000 0.00 0.00 0.00 2.15
101 102 4.536489 GGCACCCTCCTATTACCTAATGAT 59.464 45.833 0.00 0.00 0.00 2.45
102 103 3.908103 GGCACCCTCCTATTACCTAATGA 59.092 47.826 0.00 0.00 0.00 2.57
103 104 3.650942 TGGCACCCTCCTATTACCTAATG 59.349 47.826 0.00 0.00 0.00 1.90
104 105 3.949430 TGGCACCCTCCTATTACCTAAT 58.051 45.455 0.00 0.00 0.00 1.73
105 106 3.424724 TGGCACCCTCCTATTACCTAA 57.575 47.619 0.00 0.00 0.00 2.69
106 107 3.043418 GTTGGCACCCTCCTATTACCTA 58.957 50.000 0.00 0.00 0.00 3.08
107 108 1.844497 GTTGGCACCCTCCTATTACCT 59.156 52.381 0.00 0.00 0.00 3.08
108 109 1.133884 GGTTGGCACCCTCCTATTACC 60.134 57.143 0.00 0.00 37.03 2.85
109 110 1.562475 TGGTTGGCACCCTCCTATTAC 59.438 52.381 1.75 0.00 43.49 1.89
110 111 1.843851 CTGGTTGGCACCCTCCTATTA 59.156 52.381 1.75 0.00 43.49 0.98
111 112 0.625849 CTGGTTGGCACCCTCCTATT 59.374 55.000 1.75 0.00 43.49 1.73
112 113 0.550147 ACTGGTTGGCACCCTCCTAT 60.550 55.000 1.75 0.00 43.49 2.57
113 114 1.151899 ACTGGTTGGCACCCTCCTA 60.152 57.895 1.75 0.00 43.49 2.94
114 115 2.450502 ACTGGTTGGCACCCTCCT 60.451 61.111 1.75 0.00 43.49 3.69
115 116 2.282462 CACTGGTTGGCACCCTCC 60.282 66.667 1.75 0.00 43.49 4.30
116 117 2.985847 GCACTGGTTGGCACCCTC 60.986 66.667 1.75 0.00 43.49 4.30
117 118 1.788518 TATGCACTGGTTGGCACCCT 61.789 55.000 1.75 0.00 43.49 4.34
118 119 0.684153 ATATGCACTGGTTGGCACCC 60.684 55.000 0.00 0.00 43.49 4.61
119 120 0.740737 GATATGCACTGGTTGGCACC 59.259 55.000 0.00 0.00 43.75 5.01
120 121 1.462616 TGATATGCACTGGTTGGCAC 58.537 50.000 0.00 0.00 43.75 5.01
121 122 2.440517 ATGATATGCACTGGTTGGCA 57.559 45.000 0.00 0.00 45.23 4.92
122 123 3.806625 AAATGATATGCACTGGTTGGC 57.193 42.857 0.00 0.00 0.00 4.52
123 124 6.629128 TGTAAAAATGATATGCACTGGTTGG 58.371 36.000 0.00 0.00 0.00 3.77
124 125 9.970395 ATATGTAAAAATGATATGCACTGGTTG 57.030 29.630 0.00 0.00 0.00 3.77
125 126 9.970395 CATATGTAAAAATGATATGCACTGGTT 57.030 29.630 0.00 0.00 0.00 3.67
126 127 9.353431 TCATATGTAAAAATGATATGCACTGGT 57.647 29.630 1.90 0.00 32.36 4.00
127 128 9.616634 GTCATATGTAAAAATGATATGCACTGG 57.383 33.333 1.90 0.00 34.77 4.00
128 129 9.321590 CGTCATATGTAAAAATGATATGCACTG 57.678 33.333 1.90 0.00 34.77 3.66
129 130 8.506437 CCGTCATATGTAAAAATGATATGCACT 58.494 33.333 1.90 0.00 34.77 4.40
130 131 8.289618 ACCGTCATATGTAAAAATGATATGCAC 58.710 33.333 1.90 0.00 34.77 4.57
131 132 8.389779 ACCGTCATATGTAAAAATGATATGCA 57.610 30.769 1.90 0.00 34.77 3.96
132 133 9.755064 GTACCGTCATATGTAAAAATGATATGC 57.245 33.333 1.90 0.00 34.77 3.14
135 136 9.263538 GGTGTACCGTCATATGTAAAAATGATA 57.736 33.333 1.90 0.00 34.77 2.15
136 137 8.149973 GGTGTACCGTCATATGTAAAAATGAT 57.850 34.615 1.90 0.00 34.77 2.45
137 138 7.542534 GGTGTACCGTCATATGTAAAAATGA 57.457 36.000 1.90 0.00 0.00 2.57
154 155 0.665369 CGTGACAGGTTCGGTGTACC 60.665 60.000 0.00 0.00 35.85 3.34
155 156 0.031178 ACGTGACAGGTTCGGTGTAC 59.969 55.000 0.00 0.00 0.00 2.90
156 157 0.031043 CACGTGACAGGTTCGGTGTA 59.969 55.000 10.90 0.00 30.41 2.90
157 158 1.227147 CACGTGACAGGTTCGGTGT 60.227 57.895 10.90 0.00 30.41 4.16
158 159 1.227147 ACACGTGACAGGTTCGGTG 60.227 57.895 25.01 0.00 37.32 4.94
159 160 1.227147 CACACGTGACAGGTTCGGT 60.227 57.895 25.01 0.00 0.00 4.69
160 161 0.528901 TTCACACGTGACAGGTTCGG 60.529 55.000 25.01 0.00 39.66 4.30
161 162 1.497991 ATTCACACGTGACAGGTTCG 58.502 50.000 25.01 0.00 39.66 3.95
162 163 2.032030 CCAATTCACACGTGACAGGTTC 60.032 50.000 25.01 0.00 39.66 3.62
163 164 1.946768 CCAATTCACACGTGACAGGTT 59.053 47.619 25.01 7.31 39.66 3.50
164 165 1.593196 CCAATTCACACGTGACAGGT 58.407 50.000 25.01 0.88 39.66 4.00
165 166 0.874390 CCCAATTCACACGTGACAGG 59.126 55.000 25.01 13.88 39.66 4.00
166 167 1.531149 GACCCAATTCACACGTGACAG 59.469 52.381 25.01 11.69 39.66 3.51
167 168 1.134371 TGACCCAATTCACACGTGACA 60.134 47.619 25.01 4.63 39.66 3.58
168 169 1.588674 TGACCCAATTCACACGTGAC 58.411 50.000 25.01 1.08 39.66 3.67
169 170 2.333688 TTGACCCAATTCACACGTGA 57.666 45.000 25.01 0.00 37.91 4.35
170 171 2.293122 ACATTGACCCAATTCACACGTG 59.707 45.455 15.48 15.48 31.05 4.49
171 172 2.582052 ACATTGACCCAATTCACACGT 58.418 42.857 0.00 0.00 31.05 4.49
172 173 3.307674 CAACATTGACCCAATTCACACG 58.692 45.455 0.00 0.00 31.05 4.49
173 174 3.652274 CCAACATTGACCCAATTCACAC 58.348 45.455 0.00 0.00 31.05 3.82
174 175 2.036992 GCCAACATTGACCCAATTCACA 59.963 45.455 0.00 0.00 31.05 3.58
175 176 2.299867 AGCCAACATTGACCCAATTCAC 59.700 45.455 0.00 0.00 31.05 3.18
176 177 2.607499 AGCCAACATTGACCCAATTCA 58.393 42.857 0.00 0.00 31.05 2.57
177 178 6.655078 ATATAGCCAACATTGACCCAATTC 57.345 37.500 0.00 0.00 31.05 2.17
178 179 6.686126 GCAATATAGCCAACATTGACCCAATT 60.686 38.462 0.00 0.00 31.05 2.32
179 180 5.221501 GCAATATAGCCAACATTGACCCAAT 60.222 40.000 0.00 0.00 34.04 3.16
180 181 4.099266 GCAATATAGCCAACATTGACCCAA 59.901 41.667 0.00 0.00 32.54 4.12
181 182 3.636300 GCAATATAGCCAACATTGACCCA 59.364 43.478 0.00 0.00 32.54 4.51
182 183 4.243007 GCAATATAGCCAACATTGACCC 57.757 45.455 0.00 0.00 32.54 4.46
194 195 8.462016 CCATCCTACATAAAAAGGCAATATAGC 58.538 37.037 0.00 0.00 32.55 2.97
195 196 8.462016 GCCATCCTACATAAAAAGGCAATATAG 58.538 37.037 0.00 0.00 40.50 1.31
196 197 7.120579 CGCCATCCTACATAAAAAGGCAATATA 59.879 37.037 0.00 0.00 40.81 0.86
197 198 6.071952 CGCCATCCTACATAAAAAGGCAATAT 60.072 38.462 0.00 0.00 40.81 1.28
198 199 5.240623 CGCCATCCTACATAAAAAGGCAATA 59.759 40.000 0.00 0.00 40.81 1.90
199 200 4.037923 CGCCATCCTACATAAAAAGGCAAT 59.962 41.667 0.00 0.00 40.81 3.56
200 201 3.380004 CGCCATCCTACATAAAAAGGCAA 59.620 43.478 0.00 0.00 40.81 4.52
201 202 2.948979 CGCCATCCTACATAAAAAGGCA 59.051 45.455 0.00 0.00 40.81 4.75
202 203 2.949644 ACGCCATCCTACATAAAAAGGC 59.050 45.455 0.00 0.00 37.54 4.35
203 204 4.210537 CGTACGCCATCCTACATAAAAAGG 59.789 45.833 0.52 0.00 0.00 3.11
204 205 4.210537 CCGTACGCCATCCTACATAAAAAG 59.789 45.833 10.49 0.00 0.00 2.27
205 206 4.121317 CCGTACGCCATCCTACATAAAAA 58.879 43.478 10.49 0.00 0.00 1.94
206 207 3.132646 ACCGTACGCCATCCTACATAAAA 59.867 43.478 10.49 0.00 0.00 1.52
207 208 2.694628 ACCGTACGCCATCCTACATAAA 59.305 45.455 10.49 0.00 0.00 1.40
208 209 2.309613 ACCGTACGCCATCCTACATAA 58.690 47.619 10.49 0.00 0.00 1.90
209 210 1.985473 ACCGTACGCCATCCTACATA 58.015 50.000 10.49 0.00 0.00 2.29
210 211 1.985473 TACCGTACGCCATCCTACAT 58.015 50.000 10.49 0.00 0.00 2.29
211 212 1.405105 GTTACCGTACGCCATCCTACA 59.595 52.381 10.49 0.00 0.00 2.74
212 213 1.597937 CGTTACCGTACGCCATCCTAC 60.598 57.143 10.49 0.00 34.45 3.18
213 214 0.662619 CGTTACCGTACGCCATCCTA 59.337 55.000 10.49 0.00 34.45 2.94
214 215 1.434696 CGTTACCGTACGCCATCCT 59.565 57.895 10.49 0.00 34.45 3.24
215 216 4.002037 CGTTACCGTACGCCATCC 57.998 61.111 10.49 0.00 34.45 3.51
233 234 2.289010 CCGCCATGATGTAGATGCACTA 60.289 50.000 0.00 0.00 0.00 2.74
234 235 1.541889 CCGCCATGATGTAGATGCACT 60.542 52.381 0.00 0.00 0.00 4.40
235 236 0.870393 CCGCCATGATGTAGATGCAC 59.130 55.000 0.00 0.00 0.00 4.57
236 237 0.886043 GCCGCCATGATGTAGATGCA 60.886 55.000 0.00 0.00 0.00 3.96
237 238 1.871772 GCCGCCATGATGTAGATGC 59.128 57.895 0.00 0.00 0.00 3.91
238 239 1.904852 GCGCCGCCATGATGTAGATG 61.905 60.000 0.00 0.00 0.00 2.90
239 240 1.669115 GCGCCGCCATGATGTAGAT 60.669 57.895 0.00 0.00 0.00 1.98
240 241 2.280119 GCGCCGCCATGATGTAGA 60.280 61.111 0.00 0.00 0.00 2.59
241 242 2.280389 AGCGCCGCCATGATGTAG 60.280 61.111 4.98 0.00 0.00 2.74
242 243 2.280119 GAGCGCCGCCATGATGTA 60.280 61.111 4.98 0.00 0.00 2.29
243 244 2.310327 TAAGAGCGCCGCCATGATGT 62.310 55.000 4.98 0.00 0.00 3.06
244 245 1.159713 TTAAGAGCGCCGCCATGATG 61.160 55.000 4.98 0.00 0.00 3.07
245 246 1.146041 TTAAGAGCGCCGCCATGAT 59.854 52.632 4.98 0.00 0.00 2.45
246 247 1.813753 GTTAAGAGCGCCGCCATGA 60.814 57.895 4.98 0.00 0.00 3.07
247 248 1.439353 ATGTTAAGAGCGCCGCCATG 61.439 55.000 4.98 0.00 0.00 3.66
248 249 1.153168 ATGTTAAGAGCGCCGCCAT 60.153 52.632 4.98 0.00 0.00 4.40
249 250 1.813753 GATGTTAAGAGCGCCGCCA 60.814 57.895 4.98 0.00 0.00 5.69
250 251 2.534903 GGATGTTAAGAGCGCCGCC 61.535 63.158 4.98 0.00 0.00 6.13
251 252 1.366111 TTGGATGTTAAGAGCGCCGC 61.366 55.000 2.29 0.00 0.00 6.53
252 253 0.373716 GTTGGATGTTAAGAGCGCCG 59.626 55.000 2.29 0.00 0.00 6.46
253 254 0.733150 GGTTGGATGTTAAGAGCGCC 59.267 55.000 2.29 0.00 0.00 6.53
254 255 1.739067 AGGTTGGATGTTAAGAGCGC 58.261 50.000 0.00 0.00 0.00 5.92
255 256 2.866762 GCTAGGTTGGATGTTAAGAGCG 59.133 50.000 0.00 0.00 0.00 5.03
256 257 3.873910 TGCTAGGTTGGATGTTAAGAGC 58.126 45.455 0.00 0.00 0.00 4.09
257 258 3.873952 GCTGCTAGGTTGGATGTTAAGAG 59.126 47.826 0.00 0.00 0.00 2.85
258 259 3.263170 TGCTGCTAGGTTGGATGTTAAGA 59.737 43.478 0.00 0.00 0.00 2.10
259 260 3.375299 GTGCTGCTAGGTTGGATGTTAAG 59.625 47.826 0.00 0.00 0.00 1.85
260 261 3.343617 GTGCTGCTAGGTTGGATGTTAA 58.656 45.455 0.00 0.00 0.00 2.01
261 262 2.355716 GGTGCTGCTAGGTTGGATGTTA 60.356 50.000 0.00 0.00 0.00 2.41
262 263 1.614317 GGTGCTGCTAGGTTGGATGTT 60.614 52.381 0.00 0.00 0.00 2.71
263 264 0.035056 GGTGCTGCTAGGTTGGATGT 60.035 55.000 0.00 0.00 0.00 3.06
264 265 1.091771 CGGTGCTGCTAGGTTGGATG 61.092 60.000 0.00 0.00 0.00 3.51
265 266 1.221840 CGGTGCTGCTAGGTTGGAT 59.778 57.895 0.00 0.00 0.00 3.41
266 267 2.662596 CGGTGCTGCTAGGTTGGA 59.337 61.111 0.00 0.00 0.00 3.53
267 268 2.436646 CCGGTGCTGCTAGGTTGG 60.437 66.667 0.00 0.00 0.00 3.77
268 269 2.034879 CACCGGTGCTGCTAGGTTG 61.035 63.158 24.02 0.00 34.25 3.77
269 270 2.347490 CACCGGTGCTGCTAGGTT 59.653 61.111 24.02 0.00 34.25 3.50
270 271 2.923035 ACACCGGTGCTGCTAGGT 60.923 61.111 34.26 9.57 37.49 3.08
271 272 2.434884 CACACCGGTGCTGCTAGG 60.435 66.667 34.26 8.76 38.37 3.02
272 273 2.434884 CCACACCGGTGCTGCTAG 60.435 66.667 34.26 16.19 43.88 3.42
273 274 2.920384 TCCACACCGGTGCTGCTA 60.920 61.111 34.26 17.40 43.88 3.49
274 275 4.320456 CTCCACACCGGTGCTGCT 62.320 66.667 34.26 12.50 43.88 4.24
275 276 4.626081 ACTCCACACCGGTGCTGC 62.626 66.667 34.26 0.00 43.88 5.25
276 277 1.525995 AAACTCCACACCGGTGCTG 60.526 57.895 34.26 27.35 43.88 4.41
277 278 1.525995 CAAACTCCACACCGGTGCT 60.526 57.895 34.26 18.48 43.88 4.40
278 279 1.822186 ACAAACTCCACACCGGTGC 60.822 57.895 34.26 0.00 43.88 5.01
279 280 0.462937 TCACAAACTCCACACCGGTG 60.463 55.000 32.83 32.83 44.85 4.94
280 281 0.253610 TTCACAAACTCCACACCGGT 59.746 50.000 0.00 0.00 35.57 5.28
281 282 0.661020 GTTCACAAACTCCACACCGG 59.339 55.000 0.00 0.00 32.36 5.28
282 283 1.063469 GTGTTCACAAACTCCACACCG 59.937 52.381 0.00 0.00 36.30 4.94
283 284 2.844122 GTGTTCACAAACTCCACACC 57.156 50.000 0.00 0.00 36.30 4.16
284 285 1.404035 GGGTGTTCACAAACTCCACAC 59.596 52.381 10.51 0.00 46.37 3.82
285 286 1.004862 TGGGTGTTCACAAACTCCACA 59.995 47.619 10.51 4.82 46.37 4.17
286 287 1.404035 GTGGGTGTTCACAAACTCCAC 59.596 52.381 13.94 13.94 46.37 4.02
287 288 1.283613 AGTGGGTGTTCACAAACTCCA 59.716 47.619 10.51 6.00 46.37 3.86
288 289 2.052782 AGTGGGTGTTCACAAACTCC 57.947 50.000 5.32 1.69 44.68 3.85
289 290 2.752903 ACAAGTGGGTGTTCACAAACTC 59.247 45.455 5.32 0.00 39.93 3.01
290 291 2.802719 ACAAGTGGGTGTTCACAAACT 58.197 42.857 5.32 4.94 39.93 2.66
291 292 3.692593 ACTACAAGTGGGTGTTCACAAAC 59.307 43.478 5.32 2.86 39.93 2.93
292 293 3.942748 GACTACAAGTGGGTGTTCACAAA 59.057 43.478 5.32 0.00 39.93 2.83
293 294 3.055021 TGACTACAAGTGGGTGTTCACAA 60.055 43.478 5.32 0.00 39.93 3.33
294 295 2.502130 TGACTACAAGTGGGTGTTCACA 59.498 45.455 5.32 0.00 39.93 3.58
295 296 2.870411 GTGACTACAAGTGGGTGTTCAC 59.130 50.000 0.00 0.00 37.89 3.18
296 297 2.158871 GGTGACTACAAGTGGGTGTTCA 60.159 50.000 0.00 0.00 32.75 3.18
297 298 2.490991 GGTGACTACAAGTGGGTGTTC 58.509 52.381 0.00 0.00 32.75 3.18
298 299 1.202604 CGGTGACTACAAGTGGGTGTT 60.203 52.381 0.00 0.00 32.75 3.32
299 300 0.391597 CGGTGACTACAAGTGGGTGT 59.608 55.000 0.00 0.00 35.43 4.16
300 301 0.391597 ACGGTGACTACAAGTGGGTG 59.608 55.000 0.00 0.00 0.00 4.61
301 302 1.891150 CTACGGTGACTACAAGTGGGT 59.109 52.381 0.00 0.00 0.00 4.51
302 303 1.203994 CCTACGGTGACTACAAGTGGG 59.796 57.143 0.00 0.00 33.90 4.61
303 304 2.165167 TCCTACGGTGACTACAAGTGG 58.835 52.381 0.00 0.00 0.00 4.00
304 305 3.928727 TTCCTACGGTGACTACAAGTG 57.071 47.619 0.00 0.00 0.00 3.16
305 306 5.713861 ACTAATTCCTACGGTGACTACAAGT 59.286 40.000 0.00 0.00 0.00 3.16
311 312 3.514309 AGCAACTAATTCCTACGGTGACT 59.486 43.478 0.00 0.00 0.00 3.41
396 397 1.736681 GATGGAGCTCTTCTGTGCAAC 59.263 52.381 14.64 0.00 35.37 4.17
425 426 0.034896 CCAAGTACGCTCACTGGGTT 59.965 55.000 0.73 0.00 42.13 4.11
435 436 0.733150 GGAATTCTGGCCAAGTACGC 59.267 55.000 7.01 0.00 0.00 4.42
436 437 2.403252 AGGAATTCTGGCCAAGTACG 57.597 50.000 7.01 0.00 0.00 3.67
437 438 5.036117 TGATAGGAATTCTGGCCAAGTAC 57.964 43.478 7.01 0.00 0.00 2.73
438 439 5.912149 ATGATAGGAATTCTGGCCAAGTA 57.088 39.130 7.01 0.00 0.00 2.24
481 482 3.700154 GCTAGCTAGCCAAAATCTTTGC 58.300 45.455 31.67 5.76 43.39 3.68
672 989 1.230635 GCAAGCATGTGACGGTGTCT 61.231 55.000 0.00 0.00 33.15 3.41
673 990 1.207593 GCAAGCATGTGACGGTGTC 59.792 57.895 0.00 0.00 0.00 3.67
674 991 0.819259 AAGCAAGCATGTGACGGTGT 60.819 50.000 0.00 0.00 0.00 4.16
675 992 0.386352 CAAGCAAGCATGTGACGGTG 60.386 55.000 0.00 0.00 0.00 4.94
756 1075 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
757 1076 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
758 1077 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
759 1078 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
760 1079 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
761 1080 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
762 1081 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
763 1082 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
764 1083 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
765 1084 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
766 1085 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
767 1086 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
768 1087 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
769 1088 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
770 1089 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
771 1090 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
772 1091 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
773 1092 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
774 1093 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
775 1094 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
776 1095 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
777 1096 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
778 1097 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
779 1098 0.886490 TGCACACACACACACACACA 60.886 50.000 0.00 0.00 0.00 3.72
780 1099 0.179192 CTGCACACACACACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
781 1100 1.921045 GCTGCACACACACACACACA 61.921 55.000 0.00 0.00 0.00 3.72
782 1101 1.226379 GCTGCACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
783 1102 1.368345 GAGCTGCACACACACACACA 61.368 55.000 1.02 0.00 0.00 3.72
784 1103 1.091771 AGAGCTGCACACACACACAC 61.092 55.000 1.02 0.00 0.00 3.82
785 1104 1.091197 CAGAGCTGCACACACACACA 61.091 55.000 1.02 0.00 0.00 3.72
786 1105 0.811219 TCAGAGCTGCACACACACAC 60.811 55.000 1.02 0.00 0.00 3.82
787 1106 0.531311 CTCAGAGCTGCACACACACA 60.531 55.000 1.02 0.00 0.00 3.72
788 1107 0.531532 ACTCAGAGCTGCACACACAC 60.532 55.000 1.02 0.00 0.00 3.82
789 1108 0.531311 CACTCAGAGCTGCACACACA 60.531 55.000 1.02 0.00 0.00 3.72
790 1109 0.249615 TCACTCAGAGCTGCACACAC 60.250 55.000 1.02 0.00 0.00 3.82
791 1110 0.033090 CTCACTCAGAGCTGCACACA 59.967 55.000 1.02 0.00 37.59 3.72
792 1111 0.669932 CCTCACTCAGAGCTGCACAC 60.670 60.000 1.02 0.00 43.31 3.82
793 1112 1.670015 CCTCACTCAGAGCTGCACA 59.330 57.895 1.02 0.00 43.31 4.57
794 1113 1.741032 GCCTCACTCAGAGCTGCAC 60.741 63.158 1.02 0.00 43.31 4.57
795 1114 1.912264 AGCCTCACTCAGAGCTGCA 60.912 57.895 1.02 0.00 43.31 4.41
796 1115 1.448189 CAGCCTCACTCAGAGCTGC 60.448 63.158 0.00 0.00 43.31 5.25
803 1122 1.903404 TGTCGAGCAGCCTCACTCA 60.903 57.895 0.00 0.00 38.00 3.41
805 1124 2.653702 GTGTCGAGCAGCCTCACT 59.346 61.111 0.00 0.00 38.00 3.41
806 1125 2.196382 TACGTGTCGAGCAGCCTCAC 62.196 60.000 0.00 0.00 38.00 3.51
809 1128 1.924320 GACTACGTGTCGAGCAGCCT 61.924 60.000 0.00 0.00 35.81 4.58
839 1158 1.148273 GAAGGGTCTGGTGCACACA 59.852 57.895 20.43 13.12 0.00 3.72
841 1160 0.764369 AGAGAAGGGTCTGGTGCACA 60.764 55.000 20.43 3.92 32.80 4.57
842 1161 0.036858 GAGAGAAGGGTCTGGTGCAC 60.037 60.000 8.80 8.80 32.80 4.57
843 1162 0.178921 AGAGAGAAGGGTCTGGTGCA 60.179 55.000 0.00 0.00 32.80 4.57
848 1167 2.099405 GTGGAGAGAGAGAAGGGTCTG 58.901 57.143 0.00 0.00 32.80 3.51
851 1170 4.405756 TTAAGTGGAGAGAGAGAAGGGT 57.594 45.455 0.00 0.00 0.00 4.34
852 1171 4.528596 TGTTTAAGTGGAGAGAGAGAAGGG 59.471 45.833 0.00 0.00 0.00 3.95
911 1264 1.002868 AGGCTCGAGCTGCAATTGT 60.003 52.632 34.46 8.52 41.70 2.71
974 1331 1.542187 GGGACTCACCGTAGCTGGTT 61.542 60.000 0.00 0.00 41.38 3.67
1006 1367 4.144297 AGAAAAGCACATTAGCAAGGTGA 58.856 39.130 14.80 0.00 45.40 4.02
1041 1408 2.470983 TCATGTCGCCATTCAACAGA 57.529 45.000 0.00 0.00 0.00 3.41
1159 1560 0.322975 GGACATCATCCCGGATCTGG 59.677 60.000 14.26 14.26 42.46 3.86
1226 1627 1.516110 ATGTAGAGGGATGCTTGGCT 58.484 50.000 0.00 0.00 0.00 4.75
1272 1673 5.206587 GGTAGTTAGTTACCTGGATCTGGA 58.793 45.833 0.00 0.00 40.00 3.86
1273 1674 4.344390 GGGTAGTTAGTTACCTGGATCTGG 59.656 50.000 0.00 0.00 42.28 3.86
1274 1675 4.344390 GGGGTAGTTAGTTACCTGGATCTG 59.656 50.000 0.00 0.00 42.28 2.90
1275 1676 4.234693 AGGGGTAGTTAGTTACCTGGATCT 59.765 45.833 0.00 0.00 42.28 2.75
1276 1677 4.554683 AGGGGTAGTTAGTTACCTGGATC 58.445 47.826 0.00 0.00 42.28 3.36
1277 1678 4.639019 AGGGGTAGTTAGTTACCTGGAT 57.361 45.455 0.00 0.00 42.28 3.41
1386 2363 3.503363 GCAGCACAGCATCCCGAC 61.503 66.667 0.00 0.00 0.00 4.79
1584 2561 1.792006 CAGAGGACCACGGTGTAAAC 58.208 55.000 7.45 0.00 0.00 2.01
1599 2579 1.086067 CGCACCACCATGTAGCAGAG 61.086 60.000 0.00 0.00 0.00 3.35
1744 2753 4.461450 AGGCTCTCATCAGTACCTCATA 57.539 45.455 0.00 0.00 0.00 2.15
1893 3009 3.378339 CGAATGACTTATACACCGGGAC 58.622 50.000 6.32 0.00 0.00 4.46
1894 3010 2.223876 GCGAATGACTTATACACCGGGA 60.224 50.000 6.32 0.00 0.00 5.14
1895 3011 2.132762 GCGAATGACTTATACACCGGG 58.867 52.381 6.32 0.00 0.00 5.73
1896 3012 1.784856 CGCGAATGACTTATACACCGG 59.215 52.381 0.00 0.00 0.00 5.28
1897 3013 2.456989 ACGCGAATGACTTATACACCG 58.543 47.619 15.93 0.00 0.00 4.94
1898 3014 4.604976 ACTACGCGAATGACTTATACACC 58.395 43.478 15.93 0.00 0.00 4.16
1899 3015 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
1900 3016 6.127810 AGAACTACGCGAATGACTTATACA 57.872 37.500 15.93 0.00 0.00 2.29
1901 3017 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
1902 3018 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
1903 3019 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
1904 3020 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
1905 3021 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
1906 3022 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
1907 3023 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
1908 3024 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
1909 3025 2.031314 TCGACCTAGAACTACGCGAATG 59.969 50.000 15.93 4.47 0.00 2.67
1910 3026 2.283298 TCGACCTAGAACTACGCGAAT 58.717 47.619 15.93 0.00 0.00 3.34
1911 3027 1.725641 TCGACCTAGAACTACGCGAA 58.274 50.000 15.93 0.00 0.00 4.70
1912 3028 1.945387 ATCGACCTAGAACTACGCGA 58.055 50.000 15.93 0.00 0.00 5.87
1913 3029 3.867055 TTATCGACCTAGAACTACGCG 57.133 47.619 3.53 3.53 0.00 6.01
1914 3030 7.859875 AGTTAAATTATCGACCTAGAACTACGC 59.140 37.037 0.00 0.00 0.00 4.42
1972 3088 9.706691 CCACACGGATGTAGTTTCTAAATATAT 57.293 33.333 0.00 0.00 36.72 0.86
1973 3089 8.916062 TCCACACGGATGTAGTTTCTAAATATA 58.084 33.333 0.00 0.00 36.72 0.86
1974 3090 7.788026 TCCACACGGATGTAGTTTCTAAATAT 58.212 34.615 0.00 0.00 36.72 1.28
1975 3091 7.172868 TCCACACGGATGTAGTTTCTAAATA 57.827 36.000 0.00 0.00 36.72 1.40
1976 3092 6.045072 TCCACACGGATGTAGTTTCTAAAT 57.955 37.500 0.00 0.00 36.72 1.40
1977 3093 5.471556 TCCACACGGATGTAGTTTCTAAA 57.528 39.130 0.00 0.00 36.72 1.85
1978 3094 5.471556 TTCCACACGGATGTAGTTTCTAA 57.528 39.130 0.00 0.00 42.41 2.10
1979 3095 5.471556 TTTCCACACGGATGTAGTTTCTA 57.528 39.130 0.00 0.00 42.41 2.10
1980 3096 4.345859 TTTCCACACGGATGTAGTTTCT 57.654 40.909 0.00 0.00 42.41 2.52
1981 3097 4.935808 AGATTTCCACACGGATGTAGTTTC 59.064 41.667 0.00 0.00 42.41 2.78
1982 3098 4.906618 AGATTTCCACACGGATGTAGTTT 58.093 39.130 0.00 0.00 42.41 2.66
1983 3099 4.553330 AGATTTCCACACGGATGTAGTT 57.447 40.909 0.00 0.00 42.41 2.24
1984 3100 4.710375 ACTAGATTTCCACACGGATGTAGT 59.290 41.667 0.00 0.00 42.41 2.73
1985 3101 5.043903 CACTAGATTTCCACACGGATGTAG 58.956 45.833 0.00 0.00 42.41 2.74
1986 3102 4.142026 CCACTAGATTTCCACACGGATGTA 60.142 45.833 0.00 0.00 42.41 2.29
1987 3103 3.369471 CCACTAGATTTCCACACGGATGT 60.369 47.826 0.00 0.00 42.41 3.06
1988 3104 3.198068 CCACTAGATTTCCACACGGATG 58.802 50.000 0.00 0.00 42.41 3.51
1989 3105 2.838202 ACCACTAGATTTCCACACGGAT 59.162 45.455 0.00 0.00 42.41 4.18
1990 3106 2.253610 ACCACTAGATTTCCACACGGA 58.746 47.619 0.00 0.00 40.60 4.69
1991 3107 2.762535 ACCACTAGATTTCCACACGG 57.237 50.000 0.00 0.00 0.00 4.94
1992 3108 6.145338 AGTATACCACTAGATTTCCACACG 57.855 41.667 0.00 0.00 34.98 4.49
1993 3109 8.788325 AAAAGTATACCACTAGATTTCCACAC 57.212 34.615 0.00 0.00 36.04 3.82
1994 3110 8.598916 TGAAAAGTATACCACTAGATTTCCACA 58.401 33.333 0.00 0.00 36.04 4.17
1995 3111 9.614792 ATGAAAAGTATACCACTAGATTTCCAC 57.385 33.333 0.00 0.00 36.04 4.02
1996 3112 9.613428 CATGAAAAGTATACCACTAGATTTCCA 57.387 33.333 0.00 0.00 36.04 3.53
1997 3113 9.832445 TCATGAAAAGTATACCACTAGATTTCC 57.168 33.333 0.00 0.00 36.04 3.13
2033 3149 9.831737 GGTCATCGATTTGAGGAATTAAATATG 57.168 33.333 0.00 0.00 39.46 1.78
2034 3150 9.799106 AGGTCATCGATTTGAGGAATTAAATAT 57.201 29.630 0.00 0.00 39.46 1.28
2036 3152 9.277783 CTAGGTCATCGATTTGAGGAATTAAAT 57.722 33.333 0.00 0.00 39.46 1.40
2037 3153 8.482943 TCTAGGTCATCGATTTGAGGAATTAAA 58.517 33.333 0.00 0.00 39.46 1.52
2038 3154 8.018537 TCTAGGTCATCGATTTGAGGAATTAA 57.981 34.615 0.00 0.00 39.46 1.40
2039 3155 7.597288 TCTAGGTCATCGATTTGAGGAATTA 57.403 36.000 0.00 0.00 39.46 1.40
2040 3156 6.485830 TCTAGGTCATCGATTTGAGGAATT 57.514 37.500 0.00 0.00 39.46 2.17
2041 3157 6.098982 AGTTCTAGGTCATCGATTTGAGGAAT 59.901 38.462 0.00 0.00 39.46 3.01
2042 3158 5.422331 AGTTCTAGGTCATCGATTTGAGGAA 59.578 40.000 0.00 0.00 39.46 3.36
2043 3159 4.956700 AGTTCTAGGTCATCGATTTGAGGA 59.043 41.667 0.00 0.00 34.44 3.71
2044 3160 5.269505 AGTTCTAGGTCATCGATTTGAGG 57.730 43.478 0.00 0.00 0.00 3.86
2045 3161 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
2046 3162 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
2047 3163 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
2048 3164 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
2049 3165 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
2050 3166 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
2051 3167 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
2052 3168 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
2053 3169 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
2054 3170 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
2055 3171 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
2056 3172 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
2057 3173 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
2058 3174 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
2059 3175 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
2060 3176 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
2061 3177 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
2062 3178 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
2063 3179 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
2064 3180 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
2065 3181 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
2066 3182 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
2067 3183 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
2068 3184 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
2069 3185 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
2070 3186 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
2071 3187 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
2072 3188 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
2073 3189 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
2074 3190 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
2075 3191 1.336125 CTCCGTCCGGGTGTATAAGTC 59.664 57.143 0.00 0.00 37.00 3.01
2076 3192 1.396653 CTCCGTCCGGGTGTATAAGT 58.603 55.000 0.00 0.00 37.00 2.24
2077 3193 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
2078 3194 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
2079 3195 1.152694 CCCTCCGTCCGGGTGTATA 60.153 63.158 0.00 0.00 36.91 1.47
2080 3196 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
2081 3197 3.650298 CTCCCTCCGTCCGGGTGTA 62.650 68.421 0.00 0.00 42.56 2.90
2083 3199 2.923634 ATACTCCCTCCGTCCGGGTG 62.924 65.000 0.00 0.00 42.56 4.61
2084 3200 2.234246 AATACTCCCTCCGTCCGGGT 62.234 60.000 0.00 0.00 42.56 5.28
2085 3201 1.047034 AAATACTCCCTCCGTCCGGG 61.047 60.000 0.00 0.00 43.38 5.73
2086 3202 0.104304 CAAATACTCCCTCCGTCCGG 59.896 60.000 0.00 0.00 0.00 5.14
2087 3203 0.104304 CCAAATACTCCCTCCGTCCG 59.896 60.000 0.00 0.00 0.00 4.79
2088 3204 0.468648 CCCAAATACTCCCTCCGTCC 59.531 60.000 0.00 0.00 0.00 4.79
2089 3205 0.179054 GCCCAAATACTCCCTCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
2090 3206 0.620700 AGCCCAAATACTCCCTCCGT 60.621 55.000 0.00 0.00 0.00 4.69
2091 3207 1.420430 TAGCCCAAATACTCCCTCCG 58.580 55.000 0.00 0.00 0.00 4.63
2092 3208 2.553247 GCATAGCCCAAATACTCCCTCC 60.553 54.545 0.00 0.00 0.00 4.30
2093 3209 2.373502 AGCATAGCCCAAATACTCCCTC 59.626 50.000 0.00 0.00 0.00 4.30
2094 3210 2.422746 AGCATAGCCCAAATACTCCCT 58.577 47.619 0.00 0.00 0.00 4.20
2095 3211 2.959465 AGCATAGCCCAAATACTCCC 57.041 50.000 0.00 0.00 0.00 4.30
2096 3212 3.243535 GCAAAGCATAGCCCAAATACTCC 60.244 47.826 0.00 0.00 0.00 3.85
2097 3213 3.633986 AGCAAAGCATAGCCCAAATACTC 59.366 43.478 0.00 0.00 0.00 2.59
2098 3214 3.635591 AGCAAAGCATAGCCCAAATACT 58.364 40.909 0.00 0.00 0.00 2.12
2099 3215 4.114794 CAAGCAAAGCATAGCCCAAATAC 58.885 43.478 0.00 0.00 0.00 1.89
2100 3216 3.430651 GCAAGCAAAGCATAGCCCAAATA 60.431 43.478 0.00 0.00 0.00 1.40
2101 3217 2.678769 GCAAGCAAAGCATAGCCCAAAT 60.679 45.455 0.00 0.00 0.00 2.32
2182 3302 6.884280 ACTCATGTCTGACGATCACATATA 57.116 37.500 2.98 0.00 0.00 0.86
2239 3364 1.545759 CAGCAATTTCAGCAGCATCG 58.454 50.000 0.00 0.00 0.00 3.84
2244 3369 0.731514 CACGGCAGCAATTTCAGCAG 60.732 55.000 0.00 0.00 0.00 4.24
2260 3385 3.133691 AGCAGCAACATGGATATACACG 58.866 45.455 0.00 0.00 0.00 4.49
2300 3428 3.288092 GGTTGGGAAGACTGTGAAACTT 58.712 45.455 0.00 0.00 38.04 2.66
2312 3440 3.699038 TCTGAAGTTGTTTGGTTGGGAAG 59.301 43.478 0.00 0.00 0.00 3.46
2441 3569 4.133820 TCGTGCCTACATATTTGGGATTG 58.866 43.478 0.00 0.00 0.00 2.67
2551 3679 2.554032 GCCTACATGGGTGCACAATATC 59.446 50.000 20.43 0.00 36.00 1.63
2599 3727 0.176680 CAGAGTCATCGGGTGGGAAG 59.823 60.000 0.00 0.00 0.00 3.46
2603 3731 1.536922 CGAATCAGAGTCATCGGGTGG 60.537 57.143 0.00 0.00 0.00 4.61
2606 3734 0.387202 AGCGAATCAGAGTCATCGGG 59.613 55.000 0.00 0.00 35.91 5.14
2634 3762 2.796500 CGAGAGGTCACCTACTCCC 58.204 63.158 14.34 0.00 31.76 4.30
2682 3810 3.985279 CGAACCAATCTACTTCACGAACA 59.015 43.478 0.00 0.00 0.00 3.18
2704 3832 1.527311 GACGAGGAAAGCAATATCGGC 59.473 52.381 0.00 0.00 37.69 5.54
2711 3839 0.249155 ACGAACGACGAGGAAAGCAA 60.249 50.000 0.00 0.00 45.77 3.91
2754 3882 1.202087 CGATCTCTGACGACGAAAGCT 60.202 52.381 0.00 0.00 0.00 3.74
2767 3895 1.653151 TCGATGTCGTGTCGATCTCT 58.347 50.000 2.04 0.00 42.57 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.