>input_sequence_68615
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CTCCGGTCACCTTGCTAATGT------GCTTTTCTTCTTCCTTCCTTTCTGTTGA------ATGGCGACATGAAATTAGA
GAAGGGGAACTAACCTA-----CGCTGTTGCTGA--------------------GTTTGGACAGCCATGGACGCCGGCAA
GACGCCTCATCCGCTGCCTCTGAGCGCG---GCCCAAAACCAGATCCGGGATGATGTCCCACTGGTCTGCGCATGGGCGC
TCGTCAACGCCTTCGCCATCGCCGGCAGCCAAGCATCCCTCTACATAGCTGGCTACACCCACCTCGCGTGCATCCAGATC
CAGGTAACTAACTACCC-CTT---------------------GG------------------------------------
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-----------------------------------------------------------------ATGCTTGACATCGCG
ACCGATTCATCATGCGCCAA-G--------TTGATATGGTGTCCT-----CTGCAGTCATCATCCATTCTGCCCTG----
-----------------------------------CCTCTGGGTCGGGATGCTGTGCTGCGCCGCAACCCAGTCGGCCGC
GGCGGCGCTGGCGCTGCTGCTCCCATGCCACCGTCGCCGGGCCCGCCGTGCCCTCGCCTACCTCGCGCTCGCGGTCACTG
TCCTCTTCCATTGCATGTACGCCATCCACTTCCGGATCTCCCTCGCCGCCTACCCAGGAGGATACATCTTCGGCTGGATC
GTTTACACCGTGG---TCCTCTGCTACATGGTGGTGCGCGACCTGACCTGCCTGACCGACCTCCTTCGAGGTGATGGTTG
GGGCAAGCAGTAGTGCAGTA-------CGCGGTCTAT----TGGTTC----AGCTAGCTTAGC-----AGCAAGCTGCAA
GGGATCATGTCC---GT---GGATCAGC---TTATGAGG---------TACTGATGAGAGCCTAGTTCTA------GGGA
ATAATTTAGGGCAGT----ATGC---------------------------------------------------------
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---
>chr3B_1_TraesCS3B01G336800
AGGGTGCAGACGACACAGGAGCAGCCAGATCTGGCGAAACCAGCATGTAATCTTCTTATGAATCAACTTCAGAGGATGTA
TATCAGTTTTATATATGACATATCATTAGGTAATAGGAGGGTGCCAACCAGTGCATATCATTTTTACATATGACGGTACA
CCGAACCTGTCACGTGTGAATTGGGTCAATGTTGGCTATATTGCCTTTTTATGTAGGATGGCGTACGGTAACGTAGTGCA
TCTACATCATGGCGGCGCTCTTAACATCCAACCTAGCAGCACCGGTGTGGAGTTTGTGAACACCCACTTGTAGTCACCGT
AGGAATTAGTTGCTGAAGTTAATCAAACACCATTCCCAGTTTGCTCGCCCAAACCAAAGATTCTCAGCAATAAATTGTTG
CACAGAAGAGCTCCATCTCAATCAGAACCCAGTGAGCGTACTTGGCCAGAATTCCTATCATTAGCTTCCAGTGAATGGCT
TGCAAAGATT----TTGGCTAGCTAGCTTTTGCTGCCGGTGCCATGCATGTAT----GCATGTGCGCGTGCTGAGTAG--
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------------------------------------------------------------------TTCATTCACATTTC
GGTAGACCTGCAAAGAAATTAAGCGTCCCACTGCGTGTTGCCAAAGAGGGTATAGCTCCTTGGCGGACGCAACTTCGCGG
CAGTTTCCCTTTGTCATTGCCATGGGATAGACACCGTCACATGCTTGCTTGTTTACATGCCGAACCGCACCAGACTCTCC
TCCTCACTGTGTGTGTGTGTGTGTGT--GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGCT
CTGAGTGAGGCTGCTCGACACGTAGTCGGTGTGTGTGTGTGTGCACCAGAC----------------CCTTCTCTCTCT-
---------CCAC--TTAAACAGCCCCGGCCGGCCTCCACCACC------GTCGTTGTGCTCTACAATTGCAGCTCGAGC
CTCTTCAGGAAAGAAGCACGCCAGGCGAC----GAACCTCGCTTGCATCCAACCAGCT----ACGGTGAGTCCCCTCCAT
CTCCGGTCACCTTGCTAATGT------GCTTTTCTTCTTCCTTCCTTTCTGTTGA------ATGGCGACATGAAATTAGA
GAAGGGGAACTAACCTA-----CGCTGTTGCTGA--------------------GTTTGGACAGCCATGGACGCCGGCAA
GACGCCTCATCCGCTGCCTCTGAGCGCG---GCCCAAAACCAGATCCGGGATGATGTCCCACTGGTCTGCGCATGGGCGC
TCGTCAACGCCTTCGCCATCGCCGGCAGCCAAGCATCCCTCTACATAGCTGGCTACACCCACCTCGCGTGCATCCAGATC
CAGGTAACTAACTACCC-CTT---------------------GG------------------------------------
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-----------------------------------------------------------------ATGCTTGACATCGCG
ACCGATTCATCATGCGCCAA-G--------TTGATATGGTGTCCT-----CTGCAGTCATCATCCATTCTGCCCTG----
-----------------------------------CCTCTGGGTCGGGATGCTGTGCTGCGCCGCAACCCAGTCGGCCGC
GGCGGCGCTGGCGCTGCTGCTCCCATGCCACCGTCGCCGGGCCCGCCGTGCCCTCGCCTACCTCGCGCTCGCGGTCACTG
TCCTCTTCCATTGCATGTACGCCATCCACTTCCGGATCTCCCTCGCCGCCTACCCAGGAGGATACATCTTCGGCTGGATC
GTTTACACCGTGG---TCCTCTGCTACATGGTGGTGCGCGACCTGACCTGCCTGACCGACCTCCTTCGAGGTGATGGTTG
GGGCAAGCAGTAGTGCAGTA-------CGCGGTCTAT----TGGTTC----AGCTAGCTTAGC-----AGCAAGCTGCAA
GGGATCATGTCC---GT---GGATCAGC---TTATGAGG---------TACTGATGAGAGCCTAGTTCTA------GGGA
ATAATTTAGGGCAGT----ATGCAT-------------------------------------------------------
---------------------TAATTCCGCAGTGA----CGATTGATGGAGTAGTGCCGTATTTGCGAATCTAGTAGCTG
G----TCTAGTG-TTAA---TATCCAGATCGACTCTAGTACTACCTCCGTCCCGGTGTATAAGTCATTCGCGTAGTTCTA
GGTCGATAATTTAACTATCTAAATATGTATTATATGTGACAAAAAATATATATTTAGAAACTACATCCGTGTGGAAATCT
AGTGGTATACTTTTCATGACATATAACACATATTTAATTCCTCAAATCGATGACCTAGAACTACGCGAATGACTTATACA
CCCGGACGGAGGGAGTATTTGGGCTATGCTTTGCTTGCTATATA----ATTAGACTGGATGGATTGTGGCTATCTTCGAT
GTATTCGACCTTAATTTTCTCTATAT--GTGATCGTCAGACATGAGTTA---TATGCTTATTTAGCACCAGCTTCGGTAT
AATCGATGCTGCTGAAATTGCTGCC---GTGTATATCCATGTTGCTGCTTTGTATAATTCGACCTTTAAGTTTCACAGTC
TTCCCAACCAAACAACTTCAGAAGGGAAAATGTGTAGACCCTTTTAAGTTATTTGCTCGAAAAAAAGAGAGTAAATACAT
GGAGCTAACTTTGCAGTGTATGTGAGCGCCCCATTACAAATACGTGGGCAATCCCAAATATGTAGGCACGAGTTGAGTCC
AACTGACAAGTGTAATTCCCACATAAATACAGTTTACATAGAGCTATTGATGGATGACCCCACCGATGTATACATGCAGA
TATTGTGCACCCATGTAGGCTAATGGTCTAGACATAATTAGCTCCCCTTCCCACCCGATGACTCTGATTCGCTCCAAGGA
TGGGAGTAGGTGACCTCTCGGATGGTCGGGAGGCCAACATTTTCGTCGTTGTTCGTGAAGTAGATTGGTTCGCCGATATT
GCTTTCCTCGTCGTTCGTGAAGTAGATTGGTTCTCCGATACAGCTTTCGTCGTCAGAGATCGACACGACATCGACTACGT
TTG
>chr7D_307
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------------------------------------------------------------------CTTGTTGTCACCGT
AGGAATTAGTTGCTGAAGTTAATCAAACACCATTCCCAGTTTGCTCGCCCAAACCAAAGATTCTCAGCTATAAATTCTTG
CACAGAAGAGCTCCATCTCAATCAGCACCCAGTGA----ACTTGGCCAGAATTCCTATCATTAGCTTCCAGTGAATGGCT
TACAAAGATT----TTGGCTAGCTAGCTTCTGCTGCCGGTGCCATGCATGTAT----GCACGTGCGCGTGCTGAGTAG--
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------------------------------------------------------------------TTCATTCACATTTC
GGTAGACCTGCAAAGAAATTAAGCGTCCCACTGCGTGTTGCCAAAGAGGGTATAGCTCCTTGGCGGACGCAACTTCGCGG
CAGTTTTCCTTTGTCATTGCCATGGGATGAG-ACCGTCACATGCTTGCTCGTTTACAAGCCGAACCGCACCAGGCTCTCC
TCCTCACTGTGTGTGTGTGTGTGTGT--G----------------------------------------------CAGCT
CACGCTGCGGCTGCTCGACACGTAGTCGGTGTTGGGGAGGCCCCACGCCGATCCAGTCGCTTTCCTTCCTTCTCTCTCTC
GCTGCCTGGCCAC--TTAAACAGCCCCGGCCGGCCTCCACCACCAGCGTCGTCGTTGTGCTCTGCAATTGCCGCTCGAGC
CCCTTGAGGAAAGAAGCATACCAAGCGAC----GAACCTCGCTTGCATCCGACCAGCGAGTGACGGTGAGTCCCCTCCAT
CTCCGGCCACCTTGCTAATGCTAATGTGCTTTTCTTCTT-CTTCCTTCCTGTTGAATTAATATGGCGACATGAAATTAGA
GAAGGGGAACTAACCTA-----CGCTGGTGCTGA--------------------GCTTGGACAGCCATGGACGCCGGCAA
GACGCCTCATCCGCTGCCTCTGAGCGCG---GCCCAAAAGCAGATCCGGGATGATGTCCCACAGGTCTGCGGATGGGCGC
TCTTCAACGCCTTCGCCATCGCCGGCGGCCAAGCATCCCTCTACATAGCTGGCTACACCCACCTCGCGTGCA------AC
CAGGTAACTAACTACCTGCCCGTGTACTACCCC-----------------------------------------------
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-----------------------------------------------------------------ATGCTTGACATTGCG
ACCGATTCATCATGCGCCAAAG--------TTGATATGGTGTCCT-----CTGCAGTCATCATCCATTCTGCCCTG----
-----------------------------------CCTCTGGATCGGGATGCTGTGCTGCGCCGCAACCCAGTCGGCCGC
GGCGGCGCTGGCGCTGCTGCTCCCATGCCACCGTCGCCGGGCCA---------TCACCTACCTCGCGCTCGCGGTCACTG
TCCTCTTCCATTGCATTTACGCCATCCACTTCCGGATCTCCCTCGCCGCCTACCCAGGAGGATACATCTTCGGCTGGATC
TTTTACACCGTGG---TCATCTGCTACATGGTGGTGCGCGACCTGACCTGCCTGACCGATCTCCTTCGAGGTGATGGTTG
GGGCAAGCAGTAGTGCAGTA-------CGCGGTCTAT----TAGTTCAGCTAGC-----TAGC-----AGCAAGCTGCAA
GGGATCATGTCC---GT---GGATCAGC---TCATGAGG---------TACTGACGAGAGCCTAGTTCTACTTCTAGGGA
ATAATATAG---AGTATACATGCAT-------------------------------------------------------
---------------------TAATTCCGCTGTGA----CGATTGATGGAGTTGTGCCGTATTTGCGAATCTAGTAGCTG
GCTGGTGTAGTG-TTAA---TATCCAGATCGACTCCAGTA----------------------------------------
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-----------------GTTGGGCAATGCTTTGCCGGATATATA----ATTAGACTGGATGGATTGTGGCTATCTTTGAT
GTATTCGACCTTAATTTTCTCCATAT--GTGATCGTCAGACATGAGTTA---TATGCTTATTTAGCACCAGCTTCGGTAT
AATTGATGTTGCTGAAATTGCTGCTGCAGTGTATATCCATGTTGCTGCTTTGTATAATTCGACCTTTTAGTTTCACAGTT
TTCCGAACCAAACAACTTCAGAAGGGAAAATGTGTAGACCCTTTTAAGTTATTTGCTCGAAAAAAAGAGAGTAAATACAT
GGAGCTAACTTTGCAGTGTATGTGAGCGCCCCATTACAAATACGTGGGAAATCCCAAATATGTAGGCACGAGTGAGT--C
AACTGACAAGTGTAATTCCCACATAAATACAGTTTATATAGAGCTATTGATGGATGACCCCACCGATGTATACATGCAAA
TATGGTTCACCCATGTAGGCTAATGGTCTAGACATAATTAGCTCCCGTTCTCATCCGATGACTCTGATTCGCTCCAAGGA
TCGGAGTAGGTGACCTCTCGGATGGTCGGGAGGCCAACATTTTCGTCGTCGTTCGTGAAGTAGATTGGTTCACCGATACT
GCTTTCCTCGTCGTTCGTGAAGTAGATTGGTTCTCCAATACTGCTTTCGTCGTCCGAGATCGACACGACATCGACCAGGT
TTG
>chr3A_307
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------------------------------------------------------------------CTTGTTGTCACCGT
AGGAATTAGTTGCTGAAGTTAATCAAACACCATTCCCAGTTTGCTCGCCCAAACCAAAGATTCTCAGCAATAAATTCTTG
CACAGAAGAGCTCCATCTCAATCAGCATCCAGTGA----ACTTGGCCAGAATTCCTATCATTAGCTTCCGGTGAA-----
---------------TGGCTAGCTAGCTTTTGCTGCCGGTGCCATGCATGTATATATGCATGTGCGCGTGCTGAGTAG--
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------------------------------------------------------------------TTGATTCACATTTC
GGTAGACCTG-------------------------------CAAAGAGGGTATAGCTCCTTGGCCGACGCAACTTCGCGG
CAGTTTCCCTTTGTCATTGCCATGGGATGAG-ACCGCCACATGCTTGCTCGTTTACATGCCGAACCGCACCAGACTCTCC
TCCTCACTGTGTGTGTGCGTGCGTGT--GTGTGT----------------------------------------------
---GCTGCGGCTGCTCGACACGTAGTCGGTGTTGGGGAGGCCCCACGCCGATCCAGTCGCTTTCCTTCCTTCTCTCTCTC
GCTGCCCGGCCACACTTAAACAGCCCCGTCCGGCCTCCACCACCAGCGTCGTCGTTGTGCTCTGCAATTGCAGCTCGAGC
CCCTTGAGGAAAGAAGCACACCAAGCGATCGAAGAACCTCGCGTGCATCCGACCAGTGAGCGACGGTGAGTCCCCTCCAT
CTCCGGCCACCTTGCTAATGT------GCTTTTCTTCGGCCTTCCTTCCTGTTGA------ATGGCGACATGAAATTAGA
GAAGGGGAACTAACCTAACCTACGCTGTTGCGGA--------------------GCTTGGACAGCCATGGACGCCGGCAA
GACGCCTCATCCGCTGCCTCTGAGCGTG---GCCCAAAAGCAGATCCGGGATGATGTCCCACTGGTCTGCGCATGGGCGC
TCGTCAACGCCTTCGCCATCGCCGGCGGCCAAGCATCCCTCTACATAGCTGGCTACACCCACCTCCAGTGCA------TC
CAGGTAACTAACTACCC-CCCGTGTACACTGTACTACCCCTCGG------------------------------------
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-----------------------------------------------------------------ATGCTTGACATCGCG
ACCGATTCATCATGCGCCAA-GTTGATAATTTGATATGGTGTCCT-----CTGCAGTCATCATCCATTCTGCCCTG----
-----------------------------------CCTCTGGATCGGGATGCTGTGCTGCGCCGCAACCCAGTCGGCCGC
GGCGGCGCTGGCGCTGCTGCTCCCATGCCACCGTCGCCGGGCCCGCCGTGCCCTCGCCTACCTCGCGCTCGCGGTCACCT
TCCTCTTCCATGGCATGTACGCCATCCACTTCCGGATCTCCCTCGCCGCCTACTCAGGAGGATACGTCTTCGGCTGGATC
TTTTACACCGTGG---TCATTTGCTACATGGTGGTGCGCGACCTGACCTGCCTGTCTGACCTCCTTCGAGGTGATGGGTG
GTGCAAGCAGTAGTGCAGTA-------CGCGGTCTAT----TAGTTCAGCTAGC-----TAGC----AAGCAAGCTGCAA
GGGA----------------------------------------------------------------------------
ATAATTTAGGGCAGT----ATGCAT-------------------------------------------------------
---------------------TAATTCCGCAGTGA----CGATTGATGGAGTAATGCCGTATTTGCGAATCTAGTAGCTG
GCTGGTGTAGTG-TTAA---TATCCAGATCGACTCTAGTA----------------------------------------
--------------------------------------------------------------------------------
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-----------------TTTGGGCTATGCTTTGCTTGCTATATA----ATTAGACTGGATGGATTGTGGCTATCTTTGAT
GTATTCGACCTTAATTTTCTCCACAT--GTGATCATCAGACATGAGTTACTATATGCTTA--------------------
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---
>chr3D_478
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-----------------------------------------------------------------------------GCT
TACAAAGATTTTGGTTGGCTAGCTAGCTTTTACTGCCAGTGCCATGCATGTAT----GCATGTGCGCGTGCTGAGAGCAT
CTCCAACAACCGCACAAAAAATTTGCGCATAATAAATGTTATAGCACGCCATTGTAGCACTTTTAATGCGCGGGGACCAA
CATTGCTTTAGCAGACGGCACGCACTCTCAAAAAAACACGCAATGAAAATTGTGAAGTGTGTGCAATCTGGAGCCCAAAA
TATGCTGCGCGCGATAGCGTTTCTCAGCGCGTGCCTAAAACTTCATAGCGCGCGCAATATTTTACAGCATCTGTTGGAGC
TGTTCGGCGCCAAAAAAACGAATTGTTAGCGTGCGGAGCTTTTTTGGGCGCCTGTTGGACATGCTCTTGATTCACATTTC
AGTAGACCTGCAAAGAAATTAAGCGTCCCACTGTGTGTTGCCAAAGAGGGTATAGCTCCTTGGCAGACGCAATGTCGCGG
CAGTTTCCCATTGTCATTGCCATGGGATGAGG-CCGTCACATGCTTGCTTGTTTGCATGCCGAACCGCACCAGT-----C
TCCTCACTTTGTGTGTGTGTGTGCGCGCG----------------------------------------------CAGCT
CAGGCTGCGGTTGCTCGACACATAGTCGGTGTTGGGGAAGCCGCACAAAGATCAAGCTGCT----TTCCTTCTCTCTCTC
GCTGCCCGGCCAC--TTAAACAGCCCCGGCCGGCGTCCACCACTAGCGTCGTCG--------------------TCGAGC
CTCTTCAGGAAAGAAGCACACCAAGCGAT----GAACCTCGCGTGCATCCGTCT-----GCCACGACGAGTCCCCTCCAT
CTCCGGCCACCTTGCTAACGT------GCTTTTCTTCTT-CTTCCTTCCTGTTGA------ATGGCGACATGAAATTAGA
GAAGGGGAACTAACCTA-----CGTTGTTGCTGATCTTGTCCTACTCCTACCTAGCTTGGACAACCATGGACGC---CAA
GTCGCCTCATCCGCTGCCTCTGAGCGCA---GCCCAAAAGCAGATCCGGGATGATGTCCCACTGGTATGCACATGGGCGC
TCGTCAACGCCTTCGCCATCGCCTGTGGCCAAGTAT------------------------ACCTCTCGCGCA------TC
CAGGTAACTACCTACTG-TCGGTGTCAAAACTGGCAGATCTCGGGTAGGGGGTCCCAAGCTATGTGTCATGGATCGATGG
GTAACAGGAGACAGGGGACTCGATGTTTACCCAGGTTCGGGCCCTCTTAATGGAGGTAATGCCCTACTTCCTGCTTGATT
GATCTTGATGGATATAGAGATTATAAGAGTTGATCTACCCCAAAATCATATGTTGTGGTCTAAAACCTAAGGGTATGATG
AATAATATCATAATCTAGCATATCCCTATCGAGTAGCCCGGCCTCGGCTTATATAATGTACCAGAGGCCTAGGATAACAA
GAGTCCTAGTCGAACACGCCGGTGGAGAGGAGTCCTTGTCTTGATCACGAAGTCTTGTGGAGTCTTCCTCATGCATGTCA
TCGGCTGTCCGAACTGGCCCATGAGTAAACGGCCATGGGGGTCCTTGGCCCAATCCAACTGATCGGGAGACGACGTGGTG
AGTACCCCCTAGACCAGGACACCGTCACCTACCTATACCTACCCATACGTGTACTAACCCCGCAAATGCTTGACATCGCG
ACCGATTCATCATGCGCCAA-GTTGA--------TATGGTGTCCTTTGCACTGCAGTAATCCGTCATTCTGCCCTACATC
GAGCTGAGGGACAC------------GGAATGTGCCCTGTCGATCGGGATGGTGTGCTGCGCTGCAACCCAGTCGGCCGC
CGCGGCGCTAGCGCTGCTGCTCCCATGCCACCATCGCCGGCCCCGCCAGGCCCTCGCCTACCTCGCGCTCGCGGTCACTA
TCCTCTTCCATTGCATCTTGGCCAGCTCCTACTAGATCTTCCCCGCCATCGACCCAGGAT---------------ACATC
TTTTACACCATGT---TCATCTTCTTCTTCGTGGTGCTCGACCTGACCTGCCTGGCCGACCTCCTTAGAGGTGATGGGTG
GGGCAA--------GCAGTA-------CGCAGCCTAT----TAGTTC----AGC-----TAGC-----AGCAAGGTGCAA
GGGATCATGTCC---GT---GGATCAGC---TCATGAGG---------TACTGATGAGAGCAAAGTTCTA------GGGA
ATAATGTGG---AGT----ATGCAT-------------------------------------------------------
---------------------TAATTCTGCTGTGATGTACGATTGATGGAGTAGCTGGTA--------------------
-----------------------------------TAGTA----------------------------------------
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-----------------TTTCGGCTATGCTTTGCTTGCTATATACTCCATTAGACTGGATGGATTGTGGCTATCTTTGAT
GTATTCGACCTTAATTTTCTC--TAT--GTGATCGTGAGACATGAGTTA---TATGCTTATTTAGCACCAGCTTCGGTAT
AATTGATGTTGCTGAAATTGCTGCGGTAGTGTATATCCATGTTGCTGTAGTGTATAATTTGACCTTTTAGTTTCACAGTT
TTCCCGACCAAACAACTTCAGAAGGGAAAATGTGTAGATCCTTTTAAGTTATTTTCTTGAAAAAAA-AGAGTAAATACAT
GGAGCTAACTTTGCAGTGTATGTGAGCGT-CCATTACAAATACGTGGGAAATCCCAAATATGTAGGCACGAG-TGAGTCC
AACTGACAAGTGTAATTCCCACATAAATATAGTTTACATAGAGCTATTGATGGATGACCCCACCGATGTATACATGCAAA
TATTGTGCACCCACGTAGGCTAATCGTCTAGACATAATTAGCTCCCGTTCTCATCCGATGACTCTGATTCGCTCCAAGGA
TCAGAGTAGGTAACCTCTCGGATGATCGGGAGGCCAACATTTTCGTCGTCGTTCCCGCAGTAGATCGATTCACCGATGCT
GCTTTCCTCGTTGTTTGTGAAGTAGATTGGTTCTCTGATACTGCTTTCATCGTCCGAGATCGACACGACGTCGACCAGGT
TTG
>chr3D_633
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--------------------------------------------------------------------GCAACTTCGCGG
CAGTTTTCCTTTGTCATTGCCATGAGAAGAG-ACCGTCACATGCTTGCTTGTTTACATGCCGCACCGCACCAGACTCTCC
TAACTT-----------TGTGTGTGT--G----------------------------------------------TAGCT
CACGCTGCGACTGCTCGACACGTAGTGGGTGTTGGTGCAGCCCCACGCGGATCGAGTCGCT----TTGCTTCTCTCTCTG
GCTGCTCGGGCAC--TTAAACAGCACA--------TCCACCACTAGCGTGGCCGCTGTGCTCTGCAATTGCAGCTCGAGC
CCCTTCAGGAAAGAAGCACACGTAG----CGAAGAACCTCGCGTGCATCCGACCAGTGAGCCACGATGAGTCCCCTCCAT
CTCCGGCCACTTTGCTAATGC------GTTTTTCTTCTT-CTTCTTTCCTGTTGA------AT-----------ATTAGA
GAGGGGGAACTAACCTA-----CGTTGTTGCTTATCTCGTCCTACTCCTACCTAGCTTGGATCTCCATGGACGC---CAA
GACGCCTCGTCCACTGCCTCTGAGCGCGGCCGCCGAAAAGAAGATCCGGGATGATGTCCCACTGGTCAGCGGATGGGCGC
TCATCAACGCCTTCGCCATCGCCTGCGGCCAAGCATCCAGCTACATATCTGTCCACTTCCACCTCCCGTGCA------TC
CAGGTAACTAACTAGCTACCCGTGTACGGTGTACTGCCCCTCGG------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------CTGCTTGACATTTCG
ACTGATCCATGACGCGCCAA-GCTGGTATGG--------------------TGCAGTCGTCGTTCATTCTGCGGTGCGTC
AAGCTGACGGACGCGGAGGCCGCCAGGGAAAGCGCCCTCTAGATCGGGAGGATGTGCTGCGCCGCATCCCAGGCGGCCGC
GGCGGCGCTGGCGCTGCTGCTCCCATGCCGCCGTCGCTGGGCTCGCCGTGCCCTCTCCTACCTCGCGCACGCGGTCACCA
TCCTCGTCCATTGCATGTATGCCAGGGCCGTCTGGGTCCTCCTCGCCGCCGACCT---AGGATACACCGTCGGCAGGGTC
TTTTACAACGTGG---TCATCTGCGTCATGGTGGTGTGCGACCTGGGCTGCCTGGCCCTCCTCCTTGGAGGTGATGGGTG
GGGCAAGCAGTAC-GCAG--------------CCTCT----TAGTTC----AGC-----TAGC-----AGCAACCTGCAA
GGGATCATGTTCGTGGT---GGATCAGT---TGACGAGG---------TACTGATGAGAGCCTAGTTTTA------TGGA
ATAATGTAG---AGT----ATGAAT-------------------------------------------------------
---------------------TAAGTATGCTATCA----CGATTGATGGAGTAGTGCCGTATGTGTGAATCTAGTAGCC-
----GTGTAGTG-TTAA---TATCCAGATCGACT----------------------------------------------
--------------------------------------------------------------------------------
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---
>chr3A_1380
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-----------------------------------CCTCTCGATCGGGATTCTGTGCTGCGCCCCAACCCAGGCGGCCGC
GGCGGCGCTGGCGCTGCTGCTCCCATGCCGCCGTCGCCGGGCCCGCCGCGCCCTCGCCTACCTCGCGCTCGCGGTCACCT
TCCTCTTCCATTGCATGTACGCCGGCGCCGTCTGGACCTTCCTCGCCGCCGACCC---AAGATACATCTCCGGCAAGATC
TTTTTTACCATGGTCATCGTCTGCCTCATCCTGGCGTGCAACCTGACCTGCCTGTCTGACCTCCTTGGAGGTGATGGGTC
GGACAAGCAGTAGTGCAGTA-------CGCAGCCTAC----TAGTTC----AGC-----TAGC-----AGCAAGCTGCAA
GGGATCATGTTCGTGGTCGTGGATCAGCTCATGATGAGG---------TACTGATGAGAGCCTAGTTCTA------GGGA
ATAATGTAG---AGT----ATGCAT-------------------------------------------------------
---------------------TACTTCTGCTGTGA----CGATTGATGGACAAGTGCTGTAATTGCGAATCTGGTAGCTG
G----TGTGGTGCTTAA---TATCCAGATCGACTCTACTA----------------------------------------
--------------------------------------------------------------------------------
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-----------------GTA------------------------------------------------------------
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---
>chr3D_1380
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-----------------------------------CCTCTGGATCGGGATGATGTGCTGCACCGCAGCCCAGGCAGCCGC
GACGGCGCTGGCACTGCTGCTCCCATGCCGCTGTCGCTGGGCTCGCCGTGCCCTCGCCTACCTCGCGCTCGCGGTCACCA
TCCTCGTCCATTGCATGTACGCCAGCGCCGTCTGGGTCCTCCTCGCCGCCGACCC---AGGATACACCATCGGCAGGGTC
TTTTACACCATGGTCATC---TGCGTCATGGTGGTGTGTGACCTGGGCTGCCTGGGCCTCCTCCTTGGAGGTGATGGGTG
GGGCAAGCAGTAC-GCAG--------------CCTAT----TAGTTC----AGC-----TAGCAGCAAAGCAACCTGCAA
GGGATCATGTTCGTGGT---GGATCAGC---TGATGAGG---------TACTGATGAGAGCCTAGTTCTA------TGGA
ATAACGTAG---AGT----ATGCAT-------------------------------------------------------
---------------------TACTCATGCTGTGA----CGATTGATGGACTAGTGCCGTATGAGTGAATCTAGTAGCC-
----GTGTAGTG-TTAATAATATCAAGATCGACTATAC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TAGTTTGTGGTTATCTTTGAT
GTATTCGACCTTAATTTTCTC--TATATGT--TCGTCAGACATGAGTTA---TATGCT----------------------
--------------------------------------------------------------------------------
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---
>chr3D_1380
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-----------------------------------CCTCTCGATCGGGATTCTGTGCTGTGCCCCAACCCAGGCGGCCGC
GGCGGCGCTGGCGCTGCTGCTCCCATGCCGCCGTCGCCGGGCCCGCCGCGTCCTCGCCTACCTCGCGCTCGCCGTCACCT
TCCTCTTCCATTGCATGTACGCCGGCGCCGTCTGGATCTTCCTCGCCGCCGACCC---AGGATACATCTTCGGCAAGATC
TTTTTTACCGTGGTCATC---TGCCTCATCCTGGTGTGCGACCTGACCTGCCTGTCTGACCTCCTTCGAGGTGATGGGTG
GGGCAAGCAGTAGTGCACTAGTAGGTACGCAACCTACTAGCTAGTTC----AGC-----TAGC-----AGCAAGCTGCAA
GGGCTCATGTTCGTGG------ATCAGC---TCGTGAGGTACTGATATTACTGATGAGAGCGTAGTTCTA------GGAG
-TAATCTAG---AGT----ATGCATTAATTCTGCTGTGACGGTTGATGGATCATGTTCGTGGATCAGCTCACCACGTCTG
ATGAGAGCGTGGAGTATGCATTAGTTCTGCTGTGA----CGATTCATGGAGTAGTGCCGTATTTGCGAATCTAGTAGCTG
G----TGTAGTG-TTAA---TATCTAGATCGAGTCC---A----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TTTGGTCAATGCTTTGCTGGCTATATA----ATTAGACTGGATAGATTGTGGCTATGTTTGAT
GTATTCGACCTTAATTTTCTC--TATATGTGATCGTCAGACATGAGTTA---TATGCTTATTTGGCACCAGTTTCGGTAT
AATGGATGTTGCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
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---
>chr3B_1391
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----------------------------------------------GGATTCTGTGCTGCGCCCCAACCTAGGCGGCCGC
AGCGGCGATGGTGCTGCTGCTCCCATGCCGC-GTTGCCAGGCCCGCCGCGCCCTCGCCTACCTCGCGCTCGCGGTCACCT
TCCTCTTCCATTGCATCTACGCCGGCGCCGTTTGGATCTTCCTCGCTGCCGACCC---AGGATACATCTTCGGCAAGATC
TTTTTTACCGTGGTCATC---TGCCTCATCCTGGTGTGCAATCTGACCTGCCTGTCTGATCTCCTTTAAGGTGATGGGTG
GGGCAAGCAGTAG-GCAGTA-------CACTGCCTAA----TAGTTC----AGC-----TAGC-----AGCAAGCTGCAA
GGGATCATGTTCGTGGTCGTGGACCAGCTCATGA---GG---------TACATATGAGAGCGTAGTTCTA------GGGA
ATAATGTAG---AGT----ATGCAT-------------------------------------------------------
-----------------GCATTACTTCTGCTGTGA----CGATTGATGGAGTACTGCTGTATTTGCGAATCTAGTAGCTG
G----TCTAGTG-TTAA---TATCTAGATCGACTCC---A----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TTTGAGCAATGCTTTGCTGGCTATATA----ATTAGACTCGATGAATTGTGGCTATGTTTGAT
GTATTCGACCTTAATTTTCTC--TATATGTGATCGTCAGACATGAGTTA---TATGCTTATTTAGCACCAGCTACGGTAT
AATTGATGTTGCTGAAATTGCTGCTGCAGTGTATATCCATGTTGCTGCAGTGTATAATTCCACCTTTTAGTTTCACAGTT
TTCACAACCAAAAAATTTC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------
----------------------------------------------------------------------------S---
-------------------------S---------SSSS-----------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------SSSS------------------------------------------------
----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-S-SS--S------------------------SS---S-SSS----S--SS-----------------------------
---------------------------------------------------------------S----------------
-------------------S---S--------------------------S------S----------------------
------S----------------------------------------S--------------------------------
-------------------------------------------------------S------------------------
---------------------------------------S----------------------------------------
--------------------------S---------------------------------------------SSSSSS--
-------------------SS-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-----------------S-------------------------------------------------------------
------------------------------------------S-----------SSSSS---------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS-----------------------------------------------------------S---
---------------------S----------------------------------------------------------
---S----S---------------S------------------------------------------S-----------S
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
------------------------------------------------------------------------------S-
----------------------------------------------S---S--S--------------------------
-S-----------------------------------------------S---------------------S------S-
-----------------------------------------S------------S--------------------S-S--
---
>forward_176
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TACA
CCGAACCTGTCACGTG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>reverse_3202
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CCGGACGGAGGGAGTATTTG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
