Multiple sequence alignment - TraesCS3B01G333400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G333400 chr3B 100.000 2843 0 0 1 2843 539944505 539941663 0.000000e+00 5251
1 TraesCS3B01G333400 chr3B 97.333 75 2 0 2769 2843 70263500 70263426 8.270000e-26 128
2 TraesCS3B01G333400 chr3B 98.551 69 1 0 2775 2843 531401274 531401342 3.850000e-24 122
3 TraesCS3B01G333400 chr3D 94.797 2806 69 26 1 2772 413678266 413675504 0.000000e+00 4301
4 TraesCS3B01G333400 chr3A 93.168 2825 85 39 1 2772 536895433 536898202 0.000000e+00 4048
5 TraesCS3B01G333400 chr1A 87.119 295 35 2 1078 1372 520939480 520939771 5.870000e-87 331
6 TraesCS3B01G333400 chr1B 86.780 295 36 2 1078 1372 575441280 575441571 2.730000e-85 326
7 TraesCS3B01G333400 chr1B 98.551 69 1 0 2775 2843 488129063 488128995 3.850000e-24 122
8 TraesCS3B01G333400 chr7B 96.053 76 3 0 2768 2843 368744653 368744728 1.070000e-24 124
9 TraesCS3B01G333400 chr7D 96.000 75 3 0 2769 2843 573953107 573953181 3.850000e-24 122
10 TraesCS3B01G333400 chr5B 97.260 73 1 1 2772 2843 139340699 139340627 3.850000e-24 122
11 TraesCS3B01G333400 chr4B 97.183 71 2 0 2773 2843 583022051 583021981 1.380000e-23 121
12 TraesCS3B01G333400 chr4B 97.101 69 2 0 2775 2843 431792317 431792249 1.790000e-22 117
13 TraesCS3B01G333400 chr2B 98.529 68 1 0 2776 2843 796156816 796156749 1.380000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G333400 chr3B 539941663 539944505 2842 True 5251 5251 100.000 1 2843 1 chr3B.!!$R2 2842
1 TraesCS3B01G333400 chr3D 413675504 413678266 2762 True 4301 4301 94.797 1 2772 1 chr3D.!!$R1 2771
2 TraesCS3B01G333400 chr3A 536895433 536898202 2769 False 4048 4048 93.168 1 2772 1 chr3A.!!$F1 2771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 435 0.179084 GCGGCCTAGCACTCAATACA 60.179 55.0 0.0 0.0 37.05 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2374 2438 1.276622 GGTAGAGTTCCTGCCCAAGA 58.723 55.0 0.0 0.0 41.26 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 9.762933 CTTTGGAATTTTGAAGTCCTTGATAAA 57.237 29.630 8.40 0.77 45.56 1.40
220 222 7.315066 ACCATTTCTCTTTCTCTCTCTTCTT 57.685 36.000 0.00 0.00 0.00 2.52
221 223 7.386059 ACCATTTCTCTTTCTCTCTCTTCTTC 58.614 38.462 0.00 0.00 0.00 2.87
222 224 7.235399 ACCATTTCTCTTTCTCTCTCTTCTTCT 59.765 37.037 0.00 0.00 0.00 2.85
314 316 3.898123 ACTAATCACTGACACCACAGACT 59.102 43.478 0.00 0.00 40.63 3.24
337 339 9.764363 GACTTTTTAGTTCAAGAAATCCCAATT 57.236 29.630 0.00 0.00 0.00 2.32
343 345 7.787623 AGTTCAAGAAATCCCAATTGAATCT 57.212 32.000 7.12 0.18 41.97 2.40
352 354 7.660030 AATCCCAATTGAATCTACGGAATTT 57.340 32.000 7.12 0.00 0.00 1.82
363 368 9.116067 TGAATCTACGGAATTTGTAATTTAGGG 57.884 33.333 0.00 0.00 0.00 3.53
430 435 0.179084 GCGGCCTAGCACTCAATACA 60.179 55.000 0.00 0.00 37.05 2.29
431 436 1.742411 GCGGCCTAGCACTCAATACAA 60.742 52.381 0.00 0.00 37.05 2.41
466 471 0.890996 GTTTCACAGAGGCCCAGTGG 60.891 60.000 16.87 0.63 34.17 4.00
467 472 1.352622 TTTCACAGAGGCCCAGTGGT 61.353 55.000 16.87 0.00 34.17 4.16
468 473 2.033141 CACAGAGGCCCAGTGGTG 59.967 66.667 8.74 1.44 0.00 4.17
469 474 2.122413 ACAGAGGCCCAGTGGTGA 60.122 61.111 8.74 0.00 0.00 4.02
470 475 2.219875 ACAGAGGCCCAGTGGTGAG 61.220 63.158 8.74 0.00 0.00 3.51
585 590 4.598036 ACCATGGAATCATTCTCTTGGT 57.402 40.909 21.47 15.19 35.54 3.67
627 633 4.783621 GGCCTGCGCATCCACAGA 62.784 66.667 12.24 0.00 35.90 3.41
628 634 2.515523 GCCTGCGCATCCACAGAT 60.516 61.111 12.24 0.00 35.90 2.90
700 725 1.581727 TTGAATAAAGCTGCCGCGCA 61.582 50.000 8.75 1.04 42.32 6.09
701 726 1.136565 GAATAAAGCTGCCGCGCAA 59.863 52.632 8.75 0.00 38.41 4.85
808 842 2.032681 GGGCACAGTGGTGGACTC 59.967 66.667 1.84 0.00 45.38 3.36
809 843 2.520536 GGGCACAGTGGTGGACTCT 61.521 63.158 1.84 0.00 45.38 3.24
810 844 1.302033 GGCACAGTGGTGGACTCTG 60.302 63.158 1.84 0.00 45.38 3.35
811 845 1.302033 GCACAGTGGTGGACTCTGG 60.302 63.158 1.84 0.00 45.38 3.86
812 846 2.044806 GCACAGTGGTGGACTCTGGT 62.045 60.000 1.84 0.00 45.38 4.00
913 947 5.236263 TGCATGCGATGTTAATTAATCGAGT 59.764 36.000 20.13 8.41 46.70 4.18
995 1035 3.364249 CTCGTCGTCGGAGGTCACG 62.364 68.421 1.55 5.81 37.69 4.35
1023 1063 3.542629 GAGCGGCAACAACCAGCAC 62.543 63.158 1.45 0.00 33.49 4.40
1404 1450 1.690633 GACCTCCTCCTCCATGCCA 60.691 63.158 0.00 0.00 0.00 4.92
1440 1486 2.549754 CGATGACAAGTTCTGCCACTTT 59.450 45.455 0.00 0.00 34.60 2.66
1627 1673 3.127548 GTCATGGAATAACAGCAGTGTGG 59.872 47.826 0.00 0.00 36.84 4.17
1636 1682 2.142761 AGCAGTGTGGACCAGAGCA 61.143 57.895 0.00 0.00 0.00 4.26
1662 1708 4.459089 GGCTCGCCACAGGTCTCC 62.459 72.222 2.41 0.00 35.81 3.71
1665 1711 1.676678 GCTCGCCACAGGTCTCCATA 61.677 60.000 0.00 0.00 0.00 2.74
1752 1798 2.161012 TCAGCTGGTTTACTACTCGTCG 59.839 50.000 15.13 0.00 0.00 5.12
1885 1931 2.551355 ACGCTGGATCGATCGATATG 57.449 50.000 29.45 21.34 34.60 1.78
2003 2051 3.637229 AGCTAGTAGAAGTGTGTGTGTGT 59.363 43.478 0.00 0.00 0.00 3.72
2004 2052 3.736252 GCTAGTAGAAGTGTGTGTGTGTG 59.264 47.826 0.00 0.00 0.00 3.82
2005 2053 2.550978 AGTAGAAGTGTGTGTGTGTGC 58.449 47.619 0.00 0.00 0.00 4.57
2006 2054 2.093711 AGTAGAAGTGTGTGTGTGTGCA 60.094 45.455 0.00 0.00 0.00 4.57
2007 2055 2.042686 AGAAGTGTGTGTGTGTGCAT 57.957 45.000 0.00 0.00 0.00 3.96
2008 2056 2.368439 AGAAGTGTGTGTGTGTGCATT 58.632 42.857 0.00 0.00 0.00 3.56
2118 2167 3.495331 TGGCTTTGGAAGTTGAGCAATA 58.505 40.909 0.00 0.00 36.87 1.90
2150 2199 1.237533 CTTGCTGTGTGTGCCATACA 58.762 50.000 0.00 0.00 34.54 2.29
2158 2207 5.767269 CTGTGTGTGCCATACAAATTTGTA 58.233 37.500 28.30 28.30 46.55 2.41
2292 2349 6.119536 TGAAACCATGTCCAGGTATGTTATC 58.880 40.000 0.00 2.74 38.76 1.75
2374 2438 6.078456 TCCATTGATTGTACTTTCTCCCAT 57.922 37.500 0.00 0.00 0.00 4.00
2510 2574 1.134818 TGCCATAGTGACTAGCCAACG 60.135 52.381 0.00 0.00 0.00 4.10
2595 2662 0.177141 GCATCCCAAAGCACATGCAT 59.823 50.000 6.64 0.00 45.16 3.96
2603 2670 3.057386 CCAAAGCACATGCATGTTACAGA 60.057 43.478 29.48 0.00 45.16 3.41
2606 2673 2.745821 AGCACATGCATGTTACAGACAG 59.254 45.455 29.48 16.27 45.16 3.51
2764 2832 6.992935 TAATTACCAATTCCCAGGCCGTGG 62.993 50.000 12.83 12.83 37.93 4.94
2781 2849 4.070009 CCGTGGGGCTAATTAATACTTCC 58.930 47.826 0.00 0.00 0.00 3.46
2782 2850 4.202430 CCGTGGGGCTAATTAATACTTCCT 60.202 45.833 0.00 0.00 0.00 3.36
2783 2851 4.995487 CGTGGGGCTAATTAATACTTCCTC 59.005 45.833 0.00 0.00 0.00 3.71
2784 2852 5.314529 GTGGGGCTAATTAATACTTCCTCC 58.685 45.833 0.00 0.00 0.00 4.30
2785 2853 4.041198 TGGGGCTAATTAATACTTCCTCCG 59.959 45.833 0.00 0.00 0.00 4.63
2786 2854 4.041321 GGGGCTAATTAATACTTCCTCCGT 59.959 45.833 0.00 0.00 0.00 4.69
2787 2855 5.455755 GGGGCTAATTAATACTTCCTCCGTT 60.456 44.000 0.00 0.00 0.00 4.44
2788 2856 5.699915 GGGCTAATTAATACTTCCTCCGTTC 59.300 44.000 0.00 0.00 0.00 3.95
2789 2857 5.699915 GGCTAATTAATACTTCCTCCGTTCC 59.300 44.000 0.00 0.00 0.00 3.62
2790 2858 6.464039 GGCTAATTAATACTTCCTCCGTTCCT 60.464 42.308 0.00 0.00 0.00 3.36
2791 2859 7.256083 GGCTAATTAATACTTCCTCCGTTCCTA 60.256 40.741 0.00 0.00 0.00 2.94
2792 2860 8.146412 GCTAATTAATACTTCCTCCGTTCCTAA 58.854 37.037 0.00 0.00 0.00 2.69
2795 2863 8.904099 ATTAATACTTCCTCCGTTCCTAAATG 57.096 34.615 0.00 0.00 0.00 2.32
2796 2864 5.952347 ATACTTCCTCCGTTCCTAAATGT 57.048 39.130 0.00 0.00 0.00 2.71
2797 2865 7.427989 AATACTTCCTCCGTTCCTAAATGTA 57.572 36.000 0.00 0.00 0.00 2.29
2798 2866 5.750352 ACTTCCTCCGTTCCTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
2799 2867 5.731591 ACTTCCTCCGTTCCTAAATGTAAG 58.268 41.667 0.00 0.00 0.00 2.34
2800 2868 5.247792 ACTTCCTCCGTTCCTAAATGTAAGT 59.752 40.000 0.00 0.00 0.00 2.24
2801 2869 5.334724 TCCTCCGTTCCTAAATGTAAGTC 57.665 43.478 0.00 0.00 0.00 3.01
2802 2870 5.021458 TCCTCCGTTCCTAAATGTAAGTCT 58.979 41.667 0.00 0.00 0.00 3.24
2803 2871 5.482878 TCCTCCGTTCCTAAATGTAAGTCTT 59.517 40.000 0.00 0.00 0.00 3.01
2804 2872 6.013984 TCCTCCGTTCCTAAATGTAAGTCTTT 60.014 38.462 0.00 0.00 0.00 2.52
2805 2873 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
2806 2874 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
2807 2875 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
2808 2876 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
2809 2877 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
2810 2878 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
2811 2879 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
2817 2885 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
2818 2886 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
2819 2887 8.645814 TGTAAGTCTTTGTAGAGATTCCACTA 57.354 34.615 0.00 0.00 0.00 2.74
2820 2888 9.256228 TGTAAGTCTTTGTAGAGATTCCACTAT 57.744 33.333 0.00 0.00 0.00 2.12
2825 2893 9.315525 GTCTTTGTAGAGATTCCACTATAAACC 57.684 37.037 0.00 0.00 30.73 3.27
2826 2894 8.195436 TCTTTGTAGAGATTCCACTATAAACCG 58.805 37.037 0.00 0.00 30.73 4.44
2827 2895 5.839621 TGTAGAGATTCCACTATAAACCGC 58.160 41.667 0.00 0.00 0.00 5.68
2828 2896 5.361571 TGTAGAGATTCCACTATAAACCGCA 59.638 40.000 0.00 0.00 0.00 5.69
2829 2897 5.552870 AGAGATTCCACTATAAACCGCAT 57.447 39.130 0.00 0.00 0.00 4.73
2830 2898 6.665992 AGAGATTCCACTATAAACCGCATA 57.334 37.500 0.00 0.00 0.00 3.14
2831 2899 6.456501 AGAGATTCCACTATAAACCGCATAC 58.543 40.000 0.00 0.00 0.00 2.39
2832 2900 5.227908 AGATTCCACTATAAACCGCATACG 58.772 41.667 0.00 0.00 39.67 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 5.186992 CACTTCGGGGGAAAGGAAAATAATT 59.813 40.000 0.00 0.00 0.00 1.40
220 222 2.489073 GCTCCCACAAGGAAAAAGGAGA 60.489 50.000 8.02 0.00 46.94 3.71
221 223 1.889170 GCTCCCACAAGGAAAAAGGAG 59.111 52.381 0.00 0.00 46.94 3.69
222 224 1.817740 CGCTCCCACAAGGAAAAAGGA 60.818 52.381 0.00 0.00 46.94 3.36
337 339 9.116067 CCCTAAATTACAAATTCCGTAGATTCA 57.884 33.333 0.00 0.00 0.00 2.57
343 345 9.111613 CATACACCCTAAATTACAAATTCCGTA 57.888 33.333 0.00 0.00 0.00 4.02
352 354 7.247456 TGTCTGTCATACACCCTAAATTACA 57.753 36.000 0.00 0.00 0.00 2.41
363 368 2.009042 GCAGGCCTGTCTGTCATACAC 61.009 57.143 32.81 8.69 37.12 2.90
413 418 4.380550 GGTTTTTGTATTGAGTGCTAGGCC 60.381 45.833 0.00 0.00 0.00 5.19
430 435 1.365894 AACGAGGGGAGGGGGTTTTT 61.366 55.000 0.00 0.00 0.00 1.94
431 436 1.365894 AAACGAGGGGAGGGGGTTTT 61.366 55.000 0.00 0.00 0.00 2.43
466 471 3.570559 GTGCTACAAGTCTCACTCTCAC 58.429 50.000 0.00 0.00 0.00 3.51
467 472 2.226674 CGTGCTACAAGTCTCACTCTCA 59.773 50.000 0.00 0.00 0.00 3.27
468 473 2.484651 TCGTGCTACAAGTCTCACTCTC 59.515 50.000 0.00 0.00 0.00 3.20
469 474 2.226912 GTCGTGCTACAAGTCTCACTCT 59.773 50.000 0.00 0.00 0.00 3.24
470 475 2.586900 GTCGTGCTACAAGTCTCACTC 58.413 52.381 0.00 0.00 0.00 3.51
546 551 2.687425 TGGTTGAACATATGAATGGCCG 59.313 45.455 10.38 0.00 37.43 6.13
551 556 7.901283 TGATTCCATGGTTGAACATATGAAT 57.099 32.000 12.58 7.45 35.74 2.57
585 590 1.882625 GCACGATCTGCATGCGGTA 60.883 57.895 25.42 13.08 46.29 4.02
627 633 4.473444 AGATGGAAATGGAATAACGGCAT 58.527 39.130 0.00 0.00 0.00 4.40
628 634 3.897239 AGATGGAAATGGAATAACGGCA 58.103 40.909 0.00 0.00 0.00 5.69
629 635 4.215613 GGTAGATGGAAATGGAATAACGGC 59.784 45.833 0.00 0.00 0.00 5.68
632 638 5.241728 GCAGGGTAGATGGAAATGGAATAAC 59.758 44.000 0.00 0.00 0.00 1.89
634 640 4.665009 AGCAGGGTAGATGGAAATGGAATA 59.335 41.667 0.00 0.00 0.00 1.75
635 641 3.464833 AGCAGGGTAGATGGAAATGGAAT 59.535 43.478 0.00 0.00 0.00 3.01
700 725 1.506025 GGATTGGGAGAGGAGAGCTT 58.494 55.000 0.00 0.00 0.00 3.74
701 726 0.399806 GGGATTGGGAGAGGAGAGCT 60.400 60.000 0.00 0.00 0.00 4.09
808 842 1.904865 AAGCATGCACCACCACCAG 60.905 57.895 21.98 0.00 0.00 4.00
809 843 2.198150 AAGCATGCACCACCACCA 59.802 55.556 21.98 0.00 0.00 4.17
810 844 1.252904 ATCAAGCATGCACCACCACC 61.253 55.000 21.98 0.00 0.00 4.61
811 845 0.604578 AATCAAGCATGCACCACCAC 59.395 50.000 21.98 0.00 0.00 4.16
812 846 0.604073 CAATCAAGCATGCACCACCA 59.396 50.000 21.98 0.00 0.00 4.17
913 947 4.139038 CACCTGCCATATCACATCATCAA 58.861 43.478 0.00 0.00 0.00 2.57
995 1035 0.654683 GTTGCCGCTCATCATCTCAC 59.345 55.000 0.00 0.00 0.00 3.51
1404 1450 3.356639 ATCGACGTGCGGCATGAGT 62.357 57.895 27.65 17.33 41.33 3.41
1456 1502 1.811266 CCTTGACGCCACCATCTCG 60.811 63.158 0.00 0.00 0.00 4.04
1515 1561 2.120940 TGGTAGCCGAACCTCCCA 59.879 61.111 2.54 0.00 40.44 4.37
1752 1798 2.317149 CTGGGAACTGATCGGCCTCC 62.317 65.000 12.90 12.90 0.00 4.30
1885 1931 2.687700 TCAGCTCCATCTTCTTCAGC 57.312 50.000 0.00 0.00 0.00 4.26
2118 2167 2.227036 AGCAAGCCCACCAGCTAGT 61.227 57.895 0.00 0.00 44.11 2.57
2292 2349 3.783943 GCACGTGTAACAACAAAACTCAG 59.216 43.478 18.38 0.00 35.74 3.35
2374 2438 1.276622 GGTAGAGTTCCTGCCCAAGA 58.723 55.000 0.00 0.00 41.26 3.02
2510 2574 2.796032 GCTTGGTGTGTCTTGAGTTTGC 60.796 50.000 0.00 0.00 0.00 3.68
2595 2662 8.590204 TCATATCCTTTAACACTGTCTGTAACA 58.410 33.333 0.00 0.00 36.18 2.41
2764 2832 5.224821 ACGGAGGAAGTATTAATTAGCCC 57.775 43.478 0.00 0.00 0.00 5.19
2772 2840 7.427989 ACATTTAGGAACGGAGGAAGTATTA 57.572 36.000 0.00 0.00 0.00 0.98
2773 2841 6.309389 ACATTTAGGAACGGAGGAAGTATT 57.691 37.500 0.00 0.00 0.00 1.89
2774 2842 5.952347 ACATTTAGGAACGGAGGAAGTAT 57.048 39.130 0.00 0.00 0.00 2.12
2775 2843 6.438425 ACTTACATTTAGGAACGGAGGAAGTA 59.562 38.462 0.00 0.00 0.00 2.24
2776 2844 5.247792 ACTTACATTTAGGAACGGAGGAAGT 59.752 40.000 0.00 0.00 0.00 3.01
2777 2845 5.731591 ACTTACATTTAGGAACGGAGGAAG 58.268 41.667 0.00 0.00 0.00 3.46
2778 2846 5.482878 AGACTTACATTTAGGAACGGAGGAA 59.517 40.000 0.00 0.00 0.00 3.36
2779 2847 5.021458 AGACTTACATTTAGGAACGGAGGA 58.979 41.667 0.00 0.00 0.00 3.71
2780 2848 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2781 2849 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
2782 2850 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
2783 2851 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
2784 2852 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
2785 2853 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
2791 2859 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
2792 2860 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
2793 2861 8.140112 AGTGGAATCTCTACAAAGACTTACAT 57.860 34.615 0.00 0.00 29.47 2.29
2794 2862 7.540474 AGTGGAATCTCTACAAAGACTTACA 57.460 36.000 0.00 0.00 29.47 2.41
2799 2867 9.315525 GGTTTATAGTGGAATCTCTACAAAGAC 57.684 37.037 0.00 0.00 29.47 3.01
2800 2868 8.195436 CGGTTTATAGTGGAATCTCTACAAAGA 58.805 37.037 0.00 0.00 29.47 2.52
2801 2869 7.042658 GCGGTTTATAGTGGAATCTCTACAAAG 60.043 40.741 0.00 0.00 29.47 2.77
2802 2870 6.759827 GCGGTTTATAGTGGAATCTCTACAAA 59.240 38.462 0.00 0.00 29.47 2.83
2803 2871 6.127281 TGCGGTTTATAGTGGAATCTCTACAA 60.127 38.462 0.00 0.00 29.47 2.41
2804 2872 5.361571 TGCGGTTTATAGTGGAATCTCTACA 59.638 40.000 0.00 0.00 29.47 2.74
2805 2873 5.839621 TGCGGTTTATAGTGGAATCTCTAC 58.160 41.667 0.00 0.00 0.00 2.59
2806 2874 6.665992 ATGCGGTTTATAGTGGAATCTCTA 57.334 37.500 0.00 0.00 0.00 2.43
2807 2875 5.552870 ATGCGGTTTATAGTGGAATCTCT 57.447 39.130 0.00 0.00 0.00 3.10
2808 2876 5.345202 CGTATGCGGTTTATAGTGGAATCTC 59.655 44.000 0.00 0.00 0.00 2.75
2809 2877 5.227908 CGTATGCGGTTTATAGTGGAATCT 58.772 41.667 0.00 0.00 0.00 2.40
2810 2878 5.511088 CGTATGCGGTTTATAGTGGAATC 57.489 43.478 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.