>input_sequence_67359
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-------------------------------------------------------------------------------A
TGATGAGCGGCAACAACCAGCACCAGCAGTC------GGCGGCGGCGGCGGCGGCGGAGGAGGAGCAGGAGCTAGCGCGG
AAGCACGCGGCCGCGGTGGCTACGTCGCGGCAATGGTCGTCGCAGACGGAGTCACGGATAGTGCGCGTGTCGCGCGTCTT
CGGCGGCAAGGACCGCCACAGCAAGGTGAAGACCGTCAAGGGTCTCCGCGACCGGCGCGTGCGGCTGTCCGTGCAGACGG
CGATCCAGCTCTACGACCTGCAGGACCGGCTGGGCCTTAACCAGCCCAGCAAGGTCGTCGACTGGCTGCTCAACGCGGCC
CGCCACGAGATCGACAAGCTGCCGCCGCTCCAGTTCCCGCCGCACCAGGTCGACCTCATGGACCACATGATGACCTCCTC
CTCCATGCCACTCATGCCGCACGTCGATGACAAGTTCTGCCACTTTGCGTCCACGCTCGCCCGAGATGGTGGCGTCAAGG
CCGGGGCCGACGCTGACGGCGGTGGAGCTCACCACAACATTGGGAGGTTCGGCTACCACCGGTTCATGGGGCTCAACAAC
AACTCCCTGGGACTGGTCAACAGCGGGATGCCATACAATTTCACCGGCGAGTCATGGAATAACAGCAGTGTGGACCAGAG
CAGCGGCGCTGGCTCGCCACAGGTCTCCATAGCTGCCGCCGCCGCGGCTCACCACTCGGCATTCCCGTCGTTACTCTCCT
TGGCTCCAAGGTCGCATCAGCTGGTTTACTACTCGTCGGAGGCCGATCAGTTCCCAGTTGATGACCTGGGCTCCCAAAGC
TTATCCTTGAGCTCGGCGAGAGCTTTCCATGACCAGACAGGAAGCTAG--------------------------------
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>chr3B_1_TraesCS3B01G333400
GATTTCTTAAATTTTTGGTGCCTTTTGGTGGTCCTTGATTAGAATTTCATGCGGCGGATCTGAGCTAGATTTGTTAATCC
GTCTCGCTTTGTATACAGATTCTTTGGAATTTTGAAGTCCTTGATAAAATTATTTTCCTTTCCC-CCGAAGTGTTCTTGT
ATCAAAACCAAAACTGCACTGGATCCCGAGCTGGAGGACCATTTCTCTTTCTCTCTCTTCTTCTCCTTTTTCCTTGTGGG
AGCGCCCGATCTGAACCGAATAGTTTGAATTACCCATTCTCATCGCTTGTAGTACTAATCACTGACACCACAGACTTTTT
AGTTCAAGAAATCCCAATTGAATCTACGGAATTT---GTAATTTAGGGTGTATGACAGACAGGCCTGCAGGATTATGAAA
AGGAAGCAGCTGCTAGCGGCCTAGCACTCAATACAAAAACCCCCTCCCCTCGTTTCACAGAGGCCCAGTGGTGAGAGTGA
GACTTGTAGCACGACCCCGATTCATAACTCGACTGCAGAACAATCAAAGAGGTCTGATGGCGGGGCTGGCCGGCCATTCA
TATGTTCAACCATGGAATCATTCTCTTGGT-ACCGCATGCAGATCGTGCCGCGCGGGCCTGCGCATCCACAGATGCCGTT
A-------------------TTCCATTTCCATCTACCCTGCTGCAGCAGTTGCATGCAGTTTAGCTTGAATAAAGCTGCC
GCGCAAGCTCTCCTCTCCCAATCCCATTCCCCCCGTTGCCGATGGAACAGTACGTACGT----GGCGCACATCGACCGGT
AGA-----CCCCTGCGCGCCGTTCGGGCACAGTGGTGGACTCTGGTGGTGGTGCATGCTTGATTGGTGGCTTGCTCCTGT
ACAAACACCATTAAATCTCCCTGCTAGCTGCAGGCCTGCAGCTGCATGCGATGTTAATTAATCGAGTTGATGATGTGATA
TGGCAGGTGAAGCTAGCTAGCGGAC------GATCGAAAGCCGATCGACGATGCGCCTCGTCGTCGGAGGTCACGTGAGA
TGATGAGCGGCAACAACCAGCACCAGCAGTC------GGCGGCGGCGGCGGCGGCGGAGGAGGAGCAGGAGCTAGCGCGG
AAGCACGCGGCCGCGGTGGCTACGTCGCGGCAATGGTCGTCGCAGACGGAGTCACGGATAGTGCGCGTGTCGCGCGTCTT
CGGCGGCAAGGACCGCCACAGCAAGGTGAAGACCGTCAAGGGTCTCCGCGACCGGCGCGTGCGGCTGTCCGTGCAGACGG
CGATCCAGCTCTACGACCTGCAGGACCGGCTGGGCCTTAACCAGCCCAGCAAGGTCGTCGACTGGCTGCTCAACGCGGCC
CGCCACGAGATCGACAAGCTGCCGCCGCTCCAGTTCCCGCCGCACCAGGTCGACCTCATGGACCACATGATGACCTCCTC
CTCCATGCCACTCATGCCGCACGTCGATGACAAGTTCTGCCACTTTGCGTCCACGCTCGCCCGAGATGGTGGCGTCAAGG
CCGGGGCCGACGCTGACGGCGGTGGAGCTCACCACAACATTGGGAGGTTCGGCTACCACCGGTTCATGGGGCTCAACAAC
AACTCCCTGGGACTGGTCAACAGCGGGATGCCATACAATTTCACCGGCGAGTCATGGAATAACAGCAGTGTGGACCAGAG
CAGCGGCGCTGGCTCGCCACAGGTCTCCATAGCTGCCGCCGCCGCGGCTCACCACTCGGCATTCCCGTCGTTACTCTCCT
TGGCTCCAAGGTCGCATCAGCTGGTTTACTACTCGTCGGAGGCCGATCAGTTCCCAGTTGATGACCTGGGCTCCCAAAGC
TTATCCTTGAGCTCGGCGAGAGCTTTCCATGACCAGACAGGAAGCTAGCTGCCACCTAGCTAGCTAGTACAACGCTGGAT
CGATCGATATGCTGAAGAAGATGGAGCTGATCGATCGGTGGTATGGATTGCAACTTTTATCCTCAAGGTAGGACTTAATA
ATGCTCTCCCAAAGCACAAAATAGCTAGCTAGTAGAAGTGTGTGTGT--GTGCATTATTGGTTTTTTCAGATATACTTCT
TCCTATGGGACAAGCCTAACCGCGGGTTCTAAAAATGTTTTATGC-TTTAAACATATGCTTAATTTGGCTTTGGAAGTTG
AGCAATACTAGCTGGTGGGCTTGCTGTGTGTGCCATACAAATTTGTAACTTCTTTTCATATACAAAGAAGTAAGCGGTGT
AATGGTTTATTGTGCAATAACATTTTTA--TTTTTTTGAACAATAATAGTTCAGCTAATTAATCTCTCTCTT------TT
GTTATGAAACCATGTCCAGGTATGTTATCTGAGTTTTG-------TTGTTACACGTGCTACAGCTTTAGCCAGCGGAAAA
AGTCCTGCCCCCGTTCCATTGATTGTACTTTCTCCCATCTTGGGCAGGAACTCTACCATTCGATACAAGTAGAAATTTAG
CAACTAGAGAAAATCCCCACGAAAACTACAAAAATAACAGGTTCACTAGCTACCATCTAAACTAGACCCATTCTGCCATA
GTGACTAGCCAACGCAAACTCAAGACACACCAAGCCCCCACTCAATAAATCTA---TATCTGACAAGAAATCATATTTGC
ACGCATCCCAAAGCACATGCATGTTACAGACAGTGTTAAAGGATATGAAAAATATTGCATCATCTAACTTCTCTAGTTTA
AAATTTTGATGTTTTATATTAATTCTTAGCATGATATG-AAATCTGAATTTTGAATCATAGCATCACACATGATTAGTTG
AAGGTGGTTAATTACCAATTCCCAGGCCGTGGGGCTAATTAATACTTCCTCCGTTCCTAAATGTAAGTCTTTGTAGAGAT
TCCACTATAAACCGCATACGGATGTATATA
>chr3D_1
GATTTCTTAAATTTTTGGTGCCTTTTGGTGGTCCTTGATTAGAATTTCATGCGGCGGATCTGAGCTAGATTTGTTAATCC
GTCTCGCTTTGTATAAAGATTCTTTGGAATTTTTAAGTCCTTGATAAGATTATTTCCCTTTCCCACCGAAGTGTTCTTGT
ATCAAAACCTAAACTGCACTGGATCCCGAGCTGGAGTACCATTTCTCTTTCTCTCTCTTCT---CCTTTTTCCTTGTGGG
AGCGCCCGATCTGAACCGAATAGTTTGAATTACCCATTCTCATCGCTTGTAGTACTAATCACTGACACCACAGAC-TTTT
AGTTCAAGAAATCCCAATCGAATCCACGGAATTAGTAGTAATTTAGGCTGTATGACAGACAGGCCTGCAGGATTATGAAA
AGGAAGCAGCTGCTAGCAGCCTAGCACTCAGTAC--AAACCCCCTCCCCTCGTTTCACAGAGGCCCAGA------AGTGA
GACTTGTAGCACGACCCCGATTCATAACTCGACTGCAGAACAATCAAAGAGGTCTGATGGCGGGGCTGGCGGCG-GTTCA
TATGTTCAACCATGGAATCATTCTCTTGG-CACCGCATGCAGATCGTGCCGCGCGGGCCTGCGCATCCACAGCGTCCATG
GGGGGCTCAAGCTGCTGTTGTTCCATTTCCATCTACCCTGCTGCAGCAGTTGCATGCAG-----CTTGAATAAAGCTGCC
GCGCGCGCTCTCCTCTCCCAATCCCATTCCCCCCGTTGCCGATGGAACAGTACGTACGT----GGCGCACATCGACCGGT
AGA-----CCCCTGCGCGCCGTTCGGGCACAGTGGTGGACT-----GCTGGTGCATGCTTGATTGGTGGCTTGCTCCTGT
ACAAACACCATTAAATCTCCCTGCTAGCTGCAGGCCTGCAGCTGCATGCGATGTTAATTAATCGAGCTGATGATGTGATA
TGGCAGGTGAAGCTAGCTAGCGGAC------GATCGAAAGCCGATCGACGATGCGCCTCGTCGTCGGAGGTCACTTGAGA
TGATGAGCGGCAACAACCAGCAGCAGCAGTC------GG------------CGGCGGAGGAGGAGCAGGAGCTAGCGCGG
AAGCACGCGGCAGCGGTGGCTACGTCGCGGCAATGGTCGTCGCAGACGGAGTCACGGATAGTGCGCGTGTCGCGCGTCTT
CGGCGGCAAGGACCGCCACAGCAAGGTGAAGACCGTCAAGGGTCTCCGCGACCGGCGCGTGCGGCTGTCCGTGCAGACGG
CGATCCAGCTCTACGACCTGCAGGACCGGCTGGGCCTTAACCAGCCCAGCAAGGTCGTCGACTGGCTGCTCAACGCGGCC
CGCCACGAGATCGACAAGCTGCCGCCGCTCCAGTTCCCGCCGCACCAGGTCGACCTCATGGACCACATGATGACCTCCTC
CTCCATGCCGCTCATGCCGCACGTCGATGACAAGTTCTGTCACTTCGCGTCCACCCTCGCCGGAGATGGTGGCGTCAAGG
CCGGGGCCGACGCAGACGGCGGTGGAGCTCACCACAACATGGGGAGGTTCGGCTACCACCGGTTCATGGGGCTCAACAAC
AA---CCTCGGACTGGTCAACAGCGGGATACCATACAATTTCACCGGCGAGTCATGGAATAACAGCAGTGTGCACCAGAG
CGGCGGCGCTGGCTCGGCGCAGGTCTCGATCGCTGCCGCCGCCGCGGCTCACCACTCGGCATTCCCATCGTTACTCTCCT
TGGCTCCAAGGTCGCATCAGCTGGTTTACTACTCGTCCGAGGCCGATCAGTTCCCAGTTGATGACCTGGGCTCCCAAAGC
TTATCCTTGAGCTCGGCGAGAGCTTTCCATGACCAGACAGGAAGCTAGCTGCCACCTAGCTAGCTAGTACAACGCTGGAT
CGATCGATATCCTGAAGAAGATGGAGCTGATCGATCGGTGGTATGGATTGCAACTTTTATCCTCAAGGTAGGACTTAATA
ATGCTCTCCCAAAGCGCAAAATAGCTAGCTAGTAGAAGTGTGTGTGT--GC-----ATTGGTTTTTTCAGATATACTTCT
TCCTATGGGACAAGCCTAACCGCGCGTTCTAAAAATGTTTTATGCTTTTAAACATATGCTTAATTTGGCTTTGGAGGTTG
AGCAATGCTAGCTGGCGGGCTTGCTGTGTGTGCCATACGAATTTGTTACTTCTTTTCATATACAAAGAAGTAAGCGGTGT
AATGGTTTATTGTGCAATAATATTTTTGATTTTTTTTTAACAATAGTAGTTTAGCTAATTAATCTCTCTCTTATA-----
-TTATGAAACCATGTCCAGGTATGTTATTTGAGTTTTGTTGTTACTTGTTACACGTGCTACAGCTTTAGCCAGCGGAAAA
AGTCCAGCCCCCGTTCCATTGATTGTACTTTCTCGCACCTTGGGCAGGAACTCTACCATTCGATACAAGTAGAAATTTAG
CAACTAGAGAAAATCCCCACGAAAACTACAAAAATAACAGGTTCACTAGCTACCATCTAAACTACACCCATTCTGCCATA
GTGACTAGCCAACACAAACTCAAGACACACCAAGCCCCCACTTAATAAATCTA---TATCTGACAAGAAATCATATTTGC
ACGCATCCCAAGGCACATGCAAGTTACAGGCAATGTTAAAGGATATGAAAAATATTGCATCATCTAACTTCTCTAGTCTA
AATTTTTGATGTTTTATATTAATTCTTAGCATGATATGAAAATCTGAATTTTGAATCATAACATCACACATGATTAGTTG
AAGGTGGTTAATTACCAATTCCCCGGCCGTGAGGCTAAT-----------------------------------------
------------------------------
>chr3A_1
GATTTCTT-AATTTTTGGTGCCTTTTCGTGGTCCTTGATTAGAATTTCATGCGGCAGATCTGGG--AGATTTGTTAATCC
CTCTCGCTTTGTATACTGATTCTTTGGAATTTTTAAGTCCTT-ATAAGATTATTTTCCTTTCCCACCGAAGTGTTCTTGT
ATCGAAACCAAAACTGCACTGGATCCCGAGCTGGAGGACCATTTCTCTTTCTCTCTCTTCT---CCTTTTTCCTTGTGGG
AGCGCCCGATCTGAACCGAATAGTTTGAATTACCCAGTCTCATCGCTTGTAGTACTAATCACTGACACCACAGAC-TTTT
AGTTCAAGAAATCCCAATCGAATCCACGGAATTAATAGTAATTTAGGCTGTATGACAGACAGGCCTGCAGGATTGTGAAA
AGGAAGCAGCTGCTAGCAGCCTAGCACTCAATAC--AAACCCCCTCCCCTCGTTTCACAGAGGCCCAGTG------GTGA
GACTTGTAGGACGACCCCGATTCATAACTTGACTGCAGAACAATCAAAGAGGGCTGA---------------GCCGTTCA
TATGTTCAACCATGGAATCATTCTCTTGGGCACCGCATGCAGATCGTGCCGCGTGCGCCTGCGCATCCACAGCGTCCATG
GGGGGCTCAAGCTGCTGTTGTTCCATTTCCATCTACCCTGCTGCAGCAGTTGCATGCAG-----CTTGAATAAAGCTGCC
GCGCGCGCTCTCCTCTCCCAATCCCA-TCCCCCCGTTGCCGATGGAACAGTACGTACGTACGTGGCGCACATCGACCGGC
CGGTAGACCCCCTGCGCGCCGTTCGGGCACAGTGGTGGACT-----GGTGGTGCATGCTTGATTGGTGGCTTGCTCCTGT
AGAAACACCATTAAATCTCCTTGCTAGCTGCAGGCCTGCAGCTGCATGCGATGTTAATTAATCGAGCTGATGATGTGATA
TGGCAGGTGAAGCTAGCTAGCGCTAGCGGATGATCGAAAGCCGATCGACGATGCGCTTCGTCGTCGGAGGTCACTTGAAA
TGATGAGCGGCAACACCCAGCAGCAGCAGTCGGCGGCGG------------CGGCGGAGGAGGAGCAGGAGTTAGCGCGG
AAGCACGCGGCCGCGGTGGCTACGTCGCGGCAATGGTCGTCCCAGACGGAGTCACGGATAGTGCGCGTGTCGCGCGTCTT
CGGCGGCAAGGACCGCCACAGCAAGGTGAAGACCGTCAAGGGTCTCCGCGACCGGCGCGTGCGGCTGTCCGTGCAGACGG
CGATCCAGCTCTACGACCTGCAGGACCGGCTGGGCCTTAACCAGCCCAGCAAGGTCGTCGACTGGCTGCTCAACGCGGCC
CGCCACGAGATCGACAAGCTGCCGCCGCTCCAGTTCCCGCCGCACCAGGTCGACCTCATGGACCACATGATGACCTCCTC
CTCCATGCCGCTCATGCCGCACGTCGATGACAAGTTCTGCCACTTCGCGTCCACGCTTGCCGGAGATGGTGGCGTCAAGG
CCGGGGCCGACGCAGATGGCGATGGAGCTCACCACAACATGGGGAGGTTCGGCTACCACCGGTTCATGGGGCTCAATAAC
AACTCCCTGGGACTGGTCAACAGCGGGATGCCATACAATTTCACCGGCGAGTCATGGAATAATAGCAGTGTGCACCAGAG
CGGCGGCGCTGGCTCGCCACAGGTCTCGATTGCTGCCGCCGCCGCGGCTCACCACTCGGCATTCCCGTCGTTACTCTCCT
TGGCTCCAAGGTCGCATCAGCTGGTTTACTACTCGTCCGAGGCCGATCAGTTCCCAGTTGATGACCTGGGCTCCCAAAGC
TTATCCTTGAGCTCGGCGAGAGCTTTCCATGACCAGACAGGGAGCTAGCTGCCACCTAGCTAGTTAGTACAACGCTGGAT
CGATCGATATCCTGAAGAAGATGGAGCTGATCGATCGGTGGTATGGATTGCAACTTTTATCCTCAAGGTAGGACTTAATA
ATGCTCTCCCAAAGCACAAAATAGCTAGCTAGTAGAAGTGTGTGTGTATGC-----ATTGGTTTTTTTAGATATACTTCT
TCCTATGGGTCAAGCCTAACCGCGGGTTCTAAAAATGTTTTATGC-TTTAAACATATGCTTAATTTGGCTTTGGAAGTTG
AGCAATGCTATCTGGTGGGCTTGCTGTGTGTGCCATACGAATTTGTTACTTCTTTTCATATACAAAGAAGTAAGCTGTGT
AATGGTTTATTGTGCAATAACATTTTTGATTTTTTTAACAT-----TAGTTTATCTAATTAATCTCTCTCTCTCTCTCTT
GCTATGAAACCATGTCCAGGTATGTTATTTGAGTTTTATTGTTACACGT---ACGTGCTACAGCTTTAGCCAGCGGAAAA
AGTCCTGCCCCCGTTCCATTGATTGTACTTTGTCCCACCTTGGGCAGGAACTCTACCATTCGATACAAGTAGAAATTTAG
CAACTAGAGAAAATCCCCATGAAAACTACAAAAATAACAGGTTCACTAGCTACCATATAAACCAGGCCCATTCTGCCATA
GTGACTAGCCAACACAAACTCAAGACACACCAAGCTCCCACTCAATAAATCTATACTATCTAACAAGAAATCATATATGC
ACGCATCCCAAAGCACATGCAAGTTACAGGCAATGTTAAAGGATATCTAAAATATTGCATCATCTAACTTCTCTAGTCTA
AAATTTTGAAGTTTTATATTAATTCTTAGCATGATATGAAA-TCTGAATTTTGAACCATAGCATCACACATGATTAGTTG
AAGGTGGTTAATTACCAATTCCCCGGCCGTGAGGCTAAT-----------------------------------------
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>SNPs
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---------------------------------S-------------S--------------------------------
-------------------------------------------------------------SSS----------------
---------------------------------------------------------------------------S----
------------------S-----S--------S-------------S--------------------------------
-----------------S----------------SS----------------------------------SSSSS-----
----------------------------------------------------------------------S----S----
-----------------------------S------------------------------------------SSS--S-S
S----------------------------------------------------------SSSSS----------------
----SS--------------------------------------------------------------------------
-----------------------------------------SSSSS----------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------S-----
----------------------S----------------SSSSSSSSSSSS-----------------------------
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---------S-----------------------------------S---------------S------------------
-------------S--------------------------S---------------------------------------
------------------------------------------------------------------------S-------
-S-------------------------S--S-------------------------------------------------
-------------------------------------S------------------------------------------
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----------S---------------------------------------------------------------------
--------------------------------------------------SSSSSS------------------------
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------S-------------------------------S-------S---------------------------------
---------------------------S---------S-------S-----S----------------------------
----------------------------S---------------------------------------------------
-------------------------------------S------------------------------------------
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-------------S------------------------------------------------------------------
---------------------S-------S--S--------------------------------------------S--
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-----------------------S-------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_435
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---------------GCGGCCTAGCACTCAATACA---------------------------------------------
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>reverse_2438
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-------------------------------------TCTTGGGCAGGAACTCTACC-----------------------
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