Multiple sequence alignment - TraesCS3B01G333400
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS3B01G333400
chr3B
100.000
2843
0
0
1
2843
539944505
539941663
0.000000e+00
5251
1
TraesCS3B01G333400
chr3B
97.333
75
2
0
2769
2843
70263500
70263426
8.270000e-26
128
2
TraesCS3B01G333400
chr3B
98.551
69
1
0
2775
2843
531401274
531401342
3.850000e-24
122
3
TraesCS3B01G333400
chr3D
94.797
2806
69
26
1
2772
413678266
413675504
0.000000e+00
4301
4
TraesCS3B01G333400
chr3A
93.168
2825
85
39
1
2772
536895433
536898202
0.000000e+00
4048
5
TraesCS3B01G333400
chr1A
87.119
295
35
2
1078
1372
520939480
520939771
5.870000e-87
331
6
TraesCS3B01G333400
chr1B
86.780
295
36
2
1078
1372
575441280
575441571
2.730000e-85
326
7
TraesCS3B01G333400
chr1B
98.551
69
1
0
2775
2843
488129063
488128995
3.850000e-24
122
8
TraesCS3B01G333400
chr7B
96.053
76
3
0
2768
2843
368744653
368744728
1.070000e-24
124
9
TraesCS3B01G333400
chr7D
96.000
75
3
0
2769
2843
573953107
573953181
3.850000e-24
122
10
TraesCS3B01G333400
chr5B
97.260
73
1
1
2772
2843
139340699
139340627
3.850000e-24
122
11
TraesCS3B01G333400
chr4B
97.183
71
2
0
2773
2843
583022051
583021981
1.380000e-23
121
12
TraesCS3B01G333400
chr4B
97.101
69
2
0
2775
2843
431792317
431792249
1.790000e-22
117
13
TraesCS3B01G333400
chr2B
98.529
68
1
0
2776
2843
796156816
796156749
1.380000e-23
121
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS3B01G333400
chr3B
539941663
539944505
2842
True
5251
5251
100.000
1
2843
1
chr3B.!!$R2
2842
1
TraesCS3B01G333400
chr3D
413675504
413678266
2762
True
4301
4301
94.797
1
2772
1
chr3D.!!$R1
2771
2
TraesCS3B01G333400
chr3A
536895433
536898202
2769
False
4048
4048
93.168
1
2772
1
chr3A.!!$F1
2771
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
430
435
0.179084
GCGGCCTAGCACTCAATACA
60.179
55.0
0.0
0.0
37.05
2.29
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2374
2438
1.276622
GGTAGAGTTCCTGCCCAAGA
58.723
55.0
0.0
0.0
41.26
3.02
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
127
128
9.762933
CTTTGGAATTTTGAAGTCCTTGATAAA
57.237
29.630
8.40
0.77
45.56
1.40
220
222
7.315066
ACCATTTCTCTTTCTCTCTCTTCTT
57.685
36.000
0.00
0.00
0.00
2.52
221
223
7.386059
ACCATTTCTCTTTCTCTCTCTTCTTC
58.614
38.462
0.00
0.00
0.00
2.87
222
224
7.235399
ACCATTTCTCTTTCTCTCTCTTCTTCT
59.765
37.037
0.00
0.00
0.00
2.85
314
316
3.898123
ACTAATCACTGACACCACAGACT
59.102
43.478
0.00
0.00
40.63
3.24
337
339
9.764363
GACTTTTTAGTTCAAGAAATCCCAATT
57.236
29.630
0.00
0.00
0.00
2.32
343
345
7.787623
AGTTCAAGAAATCCCAATTGAATCT
57.212
32.000
7.12
0.18
41.97
2.40
352
354
7.660030
AATCCCAATTGAATCTACGGAATTT
57.340
32.000
7.12
0.00
0.00
1.82
363
368
9.116067
TGAATCTACGGAATTTGTAATTTAGGG
57.884
33.333
0.00
0.00
0.00
3.53
430
435
0.179084
GCGGCCTAGCACTCAATACA
60.179
55.000
0.00
0.00
37.05
2.29
431
436
1.742411
GCGGCCTAGCACTCAATACAA
60.742
52.381
0.00
0.00
37.05
2.41
466
471
0.890996
GTTTCACAGAGGCCCAGTGG
60.891
60.000
16.87
0.63
34.17
4.00
467
472
1.352622
TTTCACAGAGGCCCAGTGGT
61.353
55.000
16.87
0.00
34.17
4.16
468
473
2.033141
CACAGAGGCCCAGTGGTG
59.967
66.667
8.74
1.44
0.00
4.17
469
474
2.122413
ACAGAGGCCCAGTGGTGA
60.122
61.111
8.74
0.00
0.00
4.02
470
475
2.219875
ACAGAGGCCCAGTGGTGAG
61.220
63.158
8.74
0.00
0.00
3.51
585
590
4.598036
ACCATGGAATCATTCTCTTGGT
57.402
40.909
21.47
15.19
35.54
3.67
627
633
4.783621
GGCCTGCGCATCCACAGA
62.784
66.667
12.24
0.00
35.90
3.41
628
634
2.515523
GCCTGCGCATCCACAGAT
60.516
61.111
12.24
0.00
35.90
2.90
700
725
1.581727
TTGAATAAAGCTGCCGCGCA
61.582
50.000
8.75
1.04
42.32
6.09
701
726
1.136565
GAATAAAGCTGCCGCGCAA
59.863
52.632
8.75
0.00
38.41
4.85
808
842
2.032681
GGGCACAGTGGTGGACTC
59.967
66.667
1.84
0.00
45.38
3.36
809
843
2.520536
GGGCACAGTGGTGGACTCT
61.521
63.158
1.84
0.00
45.38
3.24
810
844
1.302033
GGCACAGTGGTGGACTCTG
60.302
63.158
1.84
0.00
45.38
3.35
811
845
1.302033
GCACAGTGGTGGACTCTGG
60.302
63.158
1.84
0.00
45.38
3.86
812
846
2.044806
GCACAGTGGTGGACTCTGGT
62.045
60.000
1.84
0.00
45.38
4.00
913
947
5.236263
TGCATGCGATGTTAATTAATCGAGT
59.764
36.000
20.13
8.41
46.70
4.18
995
1035
3.364249
CTCGTCGTCGGAGGTCACG
62.364
68.421
1.55
5.81
37.69
4.35
1023
1063
3.542629
GAGCGGCAACAACCAGCAC
62.543
63.158
1.45
0.00
33.49
4.40
1404
1450
1.690633
GACCTCCTCCTCCATGCCA
60.691
63.158
0.00
0.00
0.00
4.92
1440
1486
2.549754
CGATGACAAGTTCTGCCACTTT
59.450
45.455
0.00
0.00
34.60
2.66
1627
1673
3.127548
GTCATGGAATAACAGCAGTGTGG
59.872
47.826
0.00
0.00
36.84
4.17
1636
1682
2.142761
AGCAGTGTGGACCAGAGCA
61.143
57.895
0.00
0.00
0.00
4.26
1662
1708
4.459089
GGCTCGCCACAGGTCTCC
62.459
72.222
2.41
0.00
35.81
3.71
1665
1711
1.676678
GCTCGCCACAGGTCTCCATA
61.677
60.000
0.00
0.00
0.00
2.74
1752
1798
2.161012
TCAGCTGGTTTACTACTCGTCG
59.839
50.000
15.13
0.00
0.00
5.12
1885
1931
2.551355
ACGCTGGATCGATCGATATG
57.449
50.000
29.45
21.34
34.60
1.78
2003
2051
3.637229
AGCTAGTAGAAGTGTGTGTGTGT
59.363
43.478
0.00
0.00
0.00
3.72
2004
2052
3.736252
GCTAGTAGAAGTGTGTGTGTGTG
59.264
47.826
0.00
0.00
0.00
3.82
2005
2053
2.550978
AGTAGAAGTGTGTGTGTGTGC
58.449
47.619
0.00
0.00
0.00
4.57
2006
2054
2.093711
AGTAGAAGTGTGTGTGTGTGCA
60.094
45.455
0.00
0.00
0.00
4.57
2007
2055
2.042686
AGAAGTGTGTGTGTGTGCAT
57.957
45.000
0.00
0.00
0.00
3.96
2008
2056
2.368439
AGAAGTGTGTGTGTGTGCATT
58.632
42.857
0.00
0.00
0.00
3.56
2118
2167
3.495331
TGGCTTTGGAAGTTGAGCAATA
58.505
40.909
0.00
0.00
36.87
1.90
2150
2199
1.237533
CTTGCTGTGTGTGCCATACA
58.762
50.000
0.00
0.00
34.54
2.29
2158
2207
5.767269
CTGTGTGTGCCATACAAATTTGTA
58.233
37.500
28.30
28.30
46.55
2.41
2292
2349
6.119536
TGAAACCATGTCCAGGTATGTTATC
58.880
40.000
0.00
2.74
38.76
1.75
2374
2438
6.078456
TCCATTGATTGTACTTTCTCCCAT
57.922
37.500
0.00
0.00
0.00
4.00
2510
2574
1.134818
TGCCATAGTGACTAGCCAACG
60.135
52.381
0.00
0.00
0.00
4.10
2595
2662
0.177141
GCATCCCAAAGCACATGCAT
59.823
50.000
6.64
0.00
45.16
3.96
2603
2670
3.057386
CCAAAGCACATGCATGTTACAGA
60.057
43.478
29.48
0.00
45.16
3.41
2606
2673
2.745821
AGCACATGCATGTTACAGACAG
59.254
45.455
29.48
16.27
45.16
3.51
2764
2832
6.992935
TAATTACCAATTCCCAGGCCGTGG
62.993
50.000
12.83
12.83
37.93
4.94
2781
2849
4.070009
CCGTGGGGCTAATTAATACTTCC
58.930
47.826
0.00
0.00
0.00
3.46
2782
2850
4.202430
CCGTGGGGCTAATTAATACTTCCT
60.202
45.833
0.00
0.00
0.00
3.36
2783
2851
4.995487
CGTGGGGCTAATTAATACTTCCTC
59.005
45.833
0.00
0.00
0.00
3.71
2784
2852
5.314529
GTGGGGCTAATTAATACTTCCTCC
58.685
45.833
0.00
0.00
0.00
4.30
2785
2853
4.041198
TGGGGCTAATTAATACTTCCTCCG
59.959
45.833
0.00
0.00
0.00
4.63
2786
2854
4.041321
GGGGCTAATTAATACTTCCTCCGT
59.959
45.833
0.00
0.00
0.00
4.69
2787
2855
5.455755
GGGGCTAATTAATACTTCCTCCGTT
60.456
44.000
0.00
0.00
0.00
4.44
2788
2856
5.699915
GGGCTAATTAATACTTCCTCCGTTC
59.300
44.000
0.00
0.00
0.00
3.95
2789
2857
5.699915
GGCTAATTAATACTTCCTCCGTTCC
59.300
44.000
0.00
0.00
0.00
3.62
2790
2858
6.464039
GGCTAATTAATACTTCCTCCGTTCCT
60.464
42.308
0.00
0.00
0.00
3.36
2791
2859
7.256083
GGCTAATTAATACTTCCTCCGTTCCTA
60.256
40.741
0.00
0.00
0.00
2.94
2792
2860
8.146412
GCTAATTAATACTTCCTCCGTTCCTAA
58.854
37.037
0.00
0.00
0.00
2.69
2795
2863
8.904099
ATTAATACTTCCTCCGTTCCTAAATG
57.096
34.615
0.00
0.00
0.00
2.32
2796
2864
5.952347
ATACTTCCTCCGTTCCTAAATGT
57.048
39.130
0.00
0.00
0.00
2.71
2797
2865
7.427989
AATACTTCCTCCGTTCCTAAATGTA
57.572
36.000
0.00
0.00
0.00
2.29
2798
2866
5.750352
ACTTCCTCCGTTCCTAAATGTAA
57.250
39.130
0.00
0.00
0.00
2.41
2799
2867
5.731591
ACTTCCTCCGTTCCTAAATGTAAG
58.268
41.667
0.00
0.00
0.00
2.34
2800
2868
5.247792
ACTTCCTCCGTTCCTAAATGTAAGT
59.752
40.000
0.00
0.00
0.00
2.24
2801
2869
5.334724
TCCTCCGTTCCTAAATGTAAGTC
57.665
43.478
0.00
0.00
0.00
3.01
2802
2870
5.021458
TCCTCCGTTCCTAAATGTAAGTCT
58.979
41.667
0.00
0.00
0.00
3.24
2803
2871
5.482878
TCCTCCGTTCCTAAATGTAAGTCTT
59.517
40.000
0.00
0.00
0.00
3.01
2804
2872
6.013984
TCCTCCGTTCCTAAATGTAAGTCTTT
60.014
38.462
0.00
0.00
0.00
2.52
2805
2873
6.092259
CCTCCGTTCCTAAATGTAAGTCTTTG
59.908
42.308
0.00
0.00
0.00
2.77
2806
2874
6.527423
TCCGTTCCTAAATGTAAGTCTTTGT
58.473
36.000
0.00
0.00
0.00
2.83
2807
2875
7.669427
TCCGTTCCTAAATGTAAGTCTTTGTA
58.331
34.615
0.00
0.00
0.00
2.41
2808
2876
7.816031
TCCGTTCCTAAATGTAAGTCTTTGTAG
59.184
37.037
0.00
0.00
0.00
2.74
2809
2877
7.816031
CCGTTCCTAAATGTAAGTCTTTGTAGA
59.184
37.037
0.00
0.00
0.00
2.59
2810
2878
8.861101
CGTTCCTAAATGTAAGTCTTTGTAGAG
58.139
37.037
0.00
0.00
0.00
2.43
2811
2879
9.924650
GTTCCTAAATGTAAGTCTTTGTAGAGA
57.075
33.333
0.00
0.00
0.00
3.10
2817
2885
8.779354
AATGTAAGTCTTTGTAGAGATTCCAC
57.221
34.615
0.00
0.00
0.00
4.02
2818
2886
7.540474
TGTAAGTCTTTGTAGAGATTCCACT
57.460
36.000
0.00
0.00
0.00
4.00
2819
2887
8.645814
TGTAAGTCTTTGTAGAGATTCCACTA
57.354
34.615
0.00
0.00
0.00
2.74
2820
2888
9.256228
TGTAAGTCTTTGTAGAGATTCCACTAT
57.744
33.333
0.00
0.00
0.00
2.12
2825
2893
9.315525
GTCTTTGTAGAGATTCCACTATAAACC
57.684
37.037
0.00
0.00
30.73
3.27
2826
2894
8.195436
TCTTTGTAGAGATTCCACTATAAACCG
58.805
37.037
0.00
0.00
30.73
4.44
2827
2895
5.839621
TGTAGAGATTCCACTATAAACCGC
58.160
41.667
0.00
0.00
0.00
5.68
2828
2896
5.361571
TGTAGAGATTCCACTATAAACCGCA
59.638
40.000
0.00
0.00
0.00
5.69
2829
2897
5.552870
AGAGATTCCACTATAAACCGCAT
57.447
39.130
0.00
0.00
0.00
4.73
2830
2898
6.665992
AGAGATTCCACTATAAACCGCATA
57.334
37.500
0.00
0.00
0.00
3.14
2831
2899
6.456501
AGAGATTCCACTATAAACCGCATAC
58.543
40.000
0.00
0.00
0.00
2.39
2832
2900
5.227908
AGATTCCACTATAAACCGCATACG
58.772
41.667
0.00
0.00
39.67
3.06
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
127
128
5.186992
CACTTCGGGGGAAAGGAAAATAATT
59.813
40.000
0.00
0.00
0.00
1.40
220
222
2.489073
GCTCCCACAAGGAAAAAGGAGA
60.489
50.000
8.02
0.00
46.94
3.71
221
223
1.889170
GCTCCCACAAGGAAAAAGGAG
59.111
52.381
0.00
0.00
46.94
3.69
222
224
1.817740
CGCTCCCACAAGGAAAAAGGA
60.818
52.381
0.00
0.00
46.94
3.36
337
339
9.116067
CCCTAAATTACAAATTCCGTAGATTCA
57.884
33.333
0.00
0.00
0.00
2.57
343
345
9.111613
CATACACCCTAAATTACAAATTCCGTA
57.888
33.333
0.00
0.00
0.00
4.02
352
354
7.247456
TGTCTGTCATACACCCTAAATTACA
57.753
36.000
0.00
0.00
0.00
2.41
363
368
2.009042
GCAGGCCTGTCTGTCATACAC
61.009
57.143
32.81
8.69
37.12
2.90
413
418
4.380550
GGTTTTTGTATTGAGTGCTAGGCC
60.381
45.833
0.00
0.00
0.00
5.19
430
435
1.365894
AACGAGGGGAGGGGGTTTTT
61.366
55.000
0.00
0.00
0.00
1.94
431
436
1.365894
AAACGAGGGGAGGGGGTTTT
61.366
55.000
0.00
0.00
0.00
2.43
466
471
3.570559
GTGCTACAAGTCTCACTCTCAC
58.429
50.000
0.00
0.00
0.00
3.51
467
472
2.226674
CGTGCTACAAGTCTCACTCTCA
59.773
50.000
0.00
0.00
0.00
3.27
468
473
2.484651
TCGTGCTACAAGTCTCACTCTC
59.515
50.000
0.00
0.00
0.00
3.20
469
474
2.226912
GTCGTGCTACAAGTCTCACTCT
59.773
50.000
0.00
0.00
0.00
3.24
470
475
2.586900
GTCGTGCTACAAGTCTCACTC
58.413
52.381
0.00
0.00
0.00
3.51
546
551
2.687425
TGGTTGAACATATGAATGGCCG
59.313
45.455
10.38
0.00
37.43
6.13
551
556
7.901283
TGATTCCATGGTTGAACATATGAAT
57.099
32.000
12.58
7.45
35.74
2.57
585
590
1.882625
GCACGATCTGCATGCGGTA
60.883
57.895
25.42
13.08
46.29
4.02
627
633
4.473444
AGATGGAAATGGAATAACGGCAT
58.527
39.130
0.00
0.00
0.00
4.40
628
634
3.897239
AGATGGAAATGGAATAACGGCA
58.103
40.909
0.00
0.00
0.00
5.69
629
635
4.215613
GGTAGATGGAAATGGAATAACGGC
59.784
45.833
0.00
0.00
0.00
5.68
632
638
5.241728
GCAGGGTAGATGGAAATGGAATAAC
59.758
44.000
0.00
0.00
0.00
1.89
634
640
4.665009
AGCAGGGTAGATGGAAATGGAATA
59.335
41.667
0.00
0.00
0.00
1.75
635
641
3.464833
AGCAGGGTAGATGGAAATGGAAT
59.535
43.478
0.00
0.00
0.00
3.01
700
725
1.506025
GGATTGGGAGAGGAGAGCTT
58.494
55.000
0.00
0.00
0.00
3.74
701
726
0.399806
GGGATTGGGAGAGGAGAGCT
60.400
60.000
0.00
0.00
0.00
4.09
808
842
1.904865
AAGCATGCACCACCACCAG
60.905
57.895
21.98
0.00
0.00
4.00
809
843
2.198150
AAGCATGCACCACCACCA
59.802
55.556
21.98
0.00
0.00
4.17
810
844
1.252904
ATCAAGCATGCACCACCACC
61.253
55.000
21.98
0.00
0.00
4.61
811
845
0.604578
AATCAAGCATGCACCACCAC
59.395
50.000
21.98
0.00
0.00
4.16
812
846
0.604073
CAATCAAGCATGCACCACCA
59.396
50.000
21.98
0.00
0.00
4.17
913
947
4.139038
CACCTGCCATATCACATCATCAA
58.861
43.478
0.00
0.00
0.00
2.57
995
1035
0.654683
GTTGCCGCTCATCATCTCAC
59.345
55.000
0.00
0.00
0.00
3.51
1404
1450
3.356639
ATCGACGTGCGGCATGAGT
62.357
57.895
27.65
17.33
41.33
3.41
1456
1502
1.811266
CCTTGACGCCACCATCTCG
60.811
63.158
0.00
0.00
0.00
4.04
1515
1561
2.120940
TGGTAGCCGAACCTCCCA
59.879
61.111
2.54
0.00
40.44
4.37
1752
1798
2.317149
CTGGGAACTGATCGGCCTCC
62.317
65.000
12.90
12.90
0.00
4.30
1885
1931
2.687700
TCAGCTCCATCTTCTTCAGC
57.312
50.000
0.00
0.00
0.00
4.26
2118
2167
2.227036
AGCAAGCCCACCAGCTAGT
61.227
57.895
0.00
0.00
44.11
2.57
2292
2349
3.783943
GCACGTGTAACAACAAAACTCAG
59.216
43.478
18.38
0.00
35.74
3.35
2374
2438
1.276622
GGTAGAGTTCCTGCCCAAGA
58.723
55.000
0.00
0.00
41.26
3.02
2510
2574
2.796032
GCTTGGTGTGTCTTGAGTTTGC
60.796
50.000
0.00
0.00
0.00
3.68
2595
2662
8.590204
TCATATCCTTTAACACTGTCTGTAACA
58.410
33.333
0.00
0.00
36.18
2.41
2764
2832
5.224821
ACGGAGGAAGTATTAATTAGCCC
57.775
43.478
0.00
0.00
0.00
5.19
2772
2840
7.427989
ACATTTAGGAACGGAGGAAGTATTA
57.572
36.000
0.00
0.00
0.00
0.98
2773
2841
6.309389
ACATTTAGGAACGGAGGAAGTATT
57.691
37.500
0.00
0.00
0.00
1.89
2774
2842
5.952347
ACATTTAGGAACGGAGGAAGTAT
57.048
39.130
0.00
0.00
0.00
2.12
2775
2843
6.438425
ACTTACATTTAGGAACGGAGGAAGTA
59.562
38.462
0.00
0.00
0.00
2.24
2776
2844
5.247792
ACTTACATTTAGGAACGGAGGAAGT
59.752
40.000
0.00
0.00
0.00
3.01
2777
2845
5.731591
ACTTACATTTAGGAACGGAGGAAG
58.268
41.667
0.00
0.00
0.00
3.46
2778
2846
5.482878
AGACTTACATTTAGGAACGGAGGAA
59.517
40.000
0.00
0.00
0.00
3.36
2779
2847
5.021458
AGACTTACATTTAGGAACGGAGGA
58.979
41.667
0.00
0.00
0.00
3.71
2780
2848
5.340439
AGACTTACATTTAGGAACGGAGG
57.660
43.478
0.00
0.00
0.00
4.30
2781
2849
6.649557
ACAAAGACTTACATTTAGGAACGGAG
59.350
38.462
0.00
0.00
0.00
4.63
2782
2850
6.527423
ACAAAGACTTACATTTAGGAACGGA
58.473
36.000
0.00
0.00
0.00
4.69
2783
2851
6.796705
ACAAAGACTTACATTTAGGAACGG
57.203
37.500
0.00
0.00
0.00
4.44
2784
2852
8.752766
TCTACAAAGACTTACATTTAGGAACG
57.247
34.615
0.00
0.00
0.00
3.95
2785
2853
9.924650
TCTCTACAAAGACTTACATTTAGGAAC
57.075
33.333
0.00
0.00
0.00
3.62
2791
2859
9.220767
GTGGAATCTCTACAAAGACTTACATTT
57.779
33.333
0.00
0.00
0.00
2.32
2792
2860
8.598041
AGTGGAATCTCTACAAAGACTTACATT
58.402
33.333
0.00
0.00
29.47
2.71
2793
2861
8.140112
AGTGGAATCTCTACAAAGACTTACAT
57.860
34.615
0.00
0.00
29.47
2.29
2794
2862
7.540474
AGTGGAATCTCTACAAAGACTTACA
57.460
36.000
0.00
0.00
29.47
2.41
2799
2867
9.315525
GGTTTATAGTGGAATCTCTACAAAGAC
57.684
37.037
0.00
0.00
29.47
3.01
2800
2868
8.195436
CGGTTTATAGTGGAATCTCTACAAAGA
58.805
37.037
0.00
0.00
29.47
2.52
2801
2869
7.042658
GCGGTTTATAGTGGAATCTCTACAAAG
60.043
40.741
0.00
0.00
29.47
2.77
2802
2870
6.759827
GCGGTTTATAGTGGAATCTCTACAAA
59.240
38.462
0.00
0.00
29.47
2.83
2803
2871
6.127281
TGCGGTTTATAGTGGAATCTCTACAA
60.127
38.462
0.00
0.00
29.47
2.41
2804
2872
5.361571
TGCGGTTTATAGTGGAATCTCTACA
59.638
40.000
0.00
0.00
29.47
2.74
2805
2873
5.839621
TGCGGTTTATAGTGGAATCTCTAC
58.160
41.667
0.00
0.00
0.00
2.59
2806
2874
6.665992
ATGCGGTTTATAGTGGAATCTCTA
57.334
37.500
0.00
0.00
0.00
2.43
2807
2875
5.552870
ATGCGGTTTATAGTGGAATCTCT
57.447
39.130
0.00
0.00
0.00
3.10
2808
2876
5.345202
CGTATGCGGTTTATAGTGGAATCTC
59.655
44.000
0.00
0.00
0.00
2.75
2809
2877
5.227908
CGTATGCGGTTTATAGTGGAATCT
58.772
41.667
0.00
0.00
0.00
2.40
2810
2878
5.511088
CGTATGCGGTTTATAGTGGAATC
57.489
43.478
0.00
0.00
0.00
2.52
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.