Multiple sequence alignment - TraesCS3B01G326400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G326400 chr3B 100.000 2341 0 0 1 2341 527232232 527234572 0.000000e+00 4324.0
1 TraesCS3B01G326400 chr3B 95.000 240 12 0 20 259 690563770 690564009 6.110000e-101 377.0
2 TraesCS3B01G326400 chr3B 97.692 130 3 0 532 661 62947365 62947236 8.420000e-55 224.0
3 TraesCS3B01G326400 chr3D 92.664 1663 90 17 689 2339 401672480 401674122 0.000000e+00 2366.0
4 TraesCS3B01G326400 chr3A 92.479 1662 96 13 689 2340 522056458 522058100 0.000000e+00 2350.0
5 TraesCS3B01G326400 chr3A 88.623 167 12 6 499 665 154641347 154641506 1.840000e-46 196.0
6 TraesCS3B01G326400 chr5B 96.667 240 8 0 20 259 432032189 432031950 1.300000e-107 399.0
7 TraesCS3B01G326400 chr5B 95.000 240 12 0 20 259 696723023 696722784 6.110000e-101 377.0
8 TraesCS3B01G326400 chr5B 89.394 264 23 2 1501 1764 664222985 664222727 6.240000e-86 327.0
9 TraesCS3B01G326400 chr5B 83.260 227 35 3 978 1203 14194486 14194262 3.050000e-49 206.0
10 TraesCS3B01G326400 chr5B 83.471 121 15 4 1964 2079 14193628 14193508 8.850000e-20 108.0
11 TraesCS3B01G326400 chr7D 95.436 241 11 0 19 259 175484780 175484540 3.650000e-103 385.0
12 TraesCS3B01G326400 chr2B 95.378 238 11 0 22 259 250280260 250280023 1.700000e-101 379.0
13 TraesCS3B01G326400 chr2B 96.324 136 4 1 525 659 174798420 174798285 3.030000e-54 222.0
14 TraesCS3B01G326400 chr2B 96.296 135 5 0 527 661 551567864 551567998 3.030000e-54 222.0
15 TraesCS3B01G326400 chr2B 95.035 141 5 2 528 667 143487963 143487824 1.090000e-53 220.0
16 TraesCS3B01G326400 chr1B 95.021 241 12 0 19 259 3574851 3574611 1.700000e-101 379.0
17 TraesCS3B01G326400 chr1B 90.909 154 12 2 519 670 681792501 681792348 3.050000e-49 206.0
18 TraesCS3B01G326400 chrUn 95.000 240 12 0 20 259 302184165 302184404 6.110000e-101 377.0
19 TraesCS3B01G326400 chr6B 95.000 240 12 0 20 259 189566513 189566274 6.110000e-101 377.0
20 TraesCS3B01G326400 chr6B 95.588 136 6 0 529 664 660666017 660665882 3.920000e-53 219.0
21 TraesCS3B01G326400 chr6B 93.706 143 8 1 531 673 612317131 612317272 1.820000e-51 213.0
22 TraesCS3B01G326400 chr4B 95.000 240 12 0 20 259 572559329 572559568 6.110000e-101 377.0
23 TraesCS3B01G326400 chr1A 89.773 264 22 2 1501 1764 276123956 276123698 1.340000e-87 333.0
24 TraesCS3B01G326400 chr1A 89.831 118 12 0 1231 1348 276124072 276123955 4.030000e-33 152.0
25 TraesCS3B01G326400 chr7B 97.692 130 3 0 529 658 705715674 705715803 8.420000e-55 224.0
26 TraesCS3B01G326400 chr5A 84.091 88 9 2 1810 1893 12820886 12820800 1.930000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G326400 chr3B 527232232 527234572 2340 False 4324 4324 100.000 1 2341 1 chr3B.!!$F1 2340
1 TraesCS3B01G326400 chr3D 401672480 401674122 1642 False 2366 2366 92.664 689 2339 1 chr3D.!!$F1 1650
2 TraesCS3B01G326400 chr3A 522056458 522058100 1642 False 2350 2350 92.479 689 2340 1 chr3A.!!$F2 1651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 550 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 1385 1.338011 CGCAGCCCAACCAAAAATCAT 60.338 47.619 0.0 0.0 0.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.803082 CGCGATGGTGTTGGCTGG 61.803 66.667 0.00 0.00 0.00 4.85
18 19 3.443045 GCGATGGTGTTGGCTGGG 61.443 66.667 0.00 0.00 0.00 4.45
19 20 2.034066 CGATGGTGTTGGCTGGGT 59.966 61.111 0.00 0.00 0.00 4.51
20 21 1.298340 CGATGGTGTTGGCTGGGTA 59.702 57.895 0.00 0.00 0.00 3.69
21 22 0.322098 CGATGGTGTTGGCTGGGTAA 60.322 55.000 0.00 0.00 0.00 2.85
22 23 1.463674 GATGGTGTTGGCTGGGTAAG 58.536 55.000 0.00 0.00 0.00 2.34
23 24 0.039618 ATGGTGTTGGCTGGGTAAGG 59.960 55.000 0.00 0.00 0.00 2.69
24 25 1.063070 TGGTGTTGGCTGGGTAAGGA 61.063 55.000 0.00 0.00 0.00 3.36
25 26 0.331616 GGTGTTGGCTGGGTAAGGAT 59.668 55.000 0.00 0.00 0.00 3.24
26 27 1.463674 GTGTTGGCTGGGTAAGGATG 58.536 55.000 0.00 0.00 0.00 3.51
27 28 0.331278 TGTTGGCTGGGTAAGGATGG 59.669 55.000 0.00 0.00 0.00 3.51
28 29 0.331616 GTTGGCTGGGTAAGGATGGT 59.668 55.000 0.00 0.00 0.00 3.55
29 30 0.623723 TTGGCTGGGTAAGGATGGTC 59.376 55.000 0.00 0.00 0.00 4.02
30 31 0.548926 TGGCTGGGTAAGGATGGTCA 60.549 55.000 0.00 0.00 0.00 4.02
31 32 0.846693 GGCTGGGTAAGGATGGTCAT 59.153 55.000 0.00 0.00 0.00 3.06
32 33 2.054799 GGCTGGGTAAGGATGGTCATA 58.945 52.381 0.00 0.00 0.00 2.15
33 34 2.039084 GGCTGGGTAAGGATGGTCATAG 59.961 54.545 0.00 0.00 0.00 2.23
34 35 2.706190 GCTGGGTAAGGATGGTCATAGT 59.294 50.000 0.00 0.00 0.00 2.12
35 36 3.495100 GCTGGGTAAGGATGGTCATAGTG 60.495 52.174 0.00 0.00 0.00 2.74
36 37 3.045634 TGGGTAAGGATGGTCATAGTGG 58.954 50.000 0.00 0.00 0.00 4.00
37 38 2.372172 GGGTAAGGATGGTCATAGTGGG 59.628 54.545 0.00 0.00 0.00 4.61
38 39 3.314693 GGTAAGGATGGTCATAGTGGGA 58.685 50.000 0.00 0.00 0.00 4.37
39 40 3.325135 GGTAAGGATGGTCATAGTGGGAG 59.675 52.174 0.00 0.00 0.00 4.30
40 41 2.877154 AGGATGGTCATAGTGGGAGT 57.123 50.000 0.00 0.00 0.00 3.85
41 42 3.993658 AGGATGGTCATAGTGGGAGTA 57.006 47.619 0.00 0.00 0.00 2.59
42 43 4.280789 AGGATGGTCATAGTGGGAGTAA 57.719 45.455 0.00 0.00 0.00 2.24
43 44 3.967987 AGGATGGTCATAGTGGGAGTAAC 59.032 47.826 0.00 0.00 0.00 2.50
44 45 3.709653 GGATGGTCATAGTGGGAGTAACA 59.290 47.826 0.00 0.00 0.00 2.41
45 46 4.348168 GGATGGTCATAGTGGGAGTAACAT 59.652 45.833 0.00 0.00 0.00 2.71
46 47 5.542635 GGATGGTCATAGTGGGAGTAACATA 59.457 44.000 0.00 0.00 0.00 2.29
47 48 6.295349 GGATGGTCATAGTGGGAGTAACATAG 60.295 46.154 0.00 0.00 0.00 2.23
48 49 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
49 50 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
50 51 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
51 52 6.552350 GGTCATAGTGGGAGTAACATAGGTAA 59.448 42.308 0.00 0.00 0.00 2.85
52 53 7.432059 GTCATAGTGGGAGTAACATAGGTAAC 58.568 42.308 0.00 0.00 0.00 2.50
53 54 7.069085 GTCATAGTGGGAGTAACATAGGTAACA 59.931 40.741 0.00 0.00 41.41 2.41
54 55 7.620491 TCATAGTGGGAGTAACATAGGTAACAA 59.380 37.037 0.00 0.00 41.41 2.83
55 56 6.046290 AGTGGGAGTAACATAGGTAACAAC 57.954 41.667 0.00 0.00 41.41 3.32
56 57 5.544948 AGTGGGAGTAACATAGGTAACAACA 59.455 40.000 0.00 0.00 41.41 3.33
57 58 6.214819 AGTGGGAGTAACATAGGTAACAACAT 59.785 38.462 0.00 0.00 41.41 2.71
58 59 7.400915 AGTGGGAGTAACATAGGTAACAACATA 59.599 37.037 0.00 0.00 41.41 2.29
59 60 7.709613 GTGGGAGTAACATAGGTAACAACATAG 59.290 40.741 0.00 0.00 41.41 2.23
60 61 7.620491 TGGGAGTAACATAGGTAACAACATAGA 59.380 37.037 0.00 0.00 41.41 1.98
61 62 8.648693 GGGAGTAACATAGGTAACAACATAGAT 58.351 37.037 0.00 0.00 41.41 1.98
62 63 9.477484 GGAGTAACATAGGTAACAACATAGATG 57.523 37.037 0.00 0.00 41.41 2.90
63 64 8.888579 AGTAACATAGGTAACAACATAGATGC 57.111 34.615 0.00 0.00 41.41 3.91
64 65 7.931948 AGTAACATAGGTAACAACATAGATGCC 59.068 37.037 0.00 0.00 41.41 4.40
65 66 6.247229 ACATAGGTAACAACATAGATGCCA 57.753 37.500 0.00 0.00 41.41 4.92
66 67 6.055588 ACATAGGTAACAACATAGATGCCAC 58.944 40.000 0.00 0.00 41.41 5.01
67 68 4.568072 AGGTAACAACATAGATGCCACA 57.432 40.909 0.00 0.00 41.41 4.17
68 69 5.116084 AGGTAACAACATAGATGCCACAT 57.884 39.130 0.00 0.00 41.41 3.21
69 70 6.247229 AGGTAACAACATAGATGCCACATA 57.753 37.500 0.00 0.00 41.41 2.29
70 71 6.658849 AGGTAACAACATAGATGCCACATAA 58.341 36.000 0.00 0.00 41.41 1.90
71 72 6.767902 AGGTAACAACATAGATGCCACATAAG 59.232 38.462 0.00 0.00 41.41 1.73
72 73 5.505173 AACAACATAGATGCCACATAAGC 57.495 39.130 0.00 0.00 0.00 3.09
73 74 4.525996 ACAACATAGATGCCACATAAGCA 58.474 39.130 0.00 0.00 45.94 3.91
74 75 4.949238 ACAACATAGATGCCACATAAGCAA 59.051 37.500 0.00 0.00 44.83 3.91
75 76 5.418524 ACAACATAGATGCCACATAAGCAAA 59.581 36.000 0.00 0.00 44.83 3.68
76 77 6.071447 ACAACATAGATGCCACATAAGCAAAA 60.071 34.615 0.00 0.00 44.83 2.44
77 78 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
78 79 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
79 80 8.236585 ACATAGATGCCACATAAGCAAAAATA 57.763 30.769 0.00 0.00 44.83 1.40
80 81 8.863086 ACATAGATGCCACATAAGCAAAAATAT 58.137 29.630 0.00 0.00 44.83 1.28
81 82 9.701098 CATAGATGCCACATAAGCAAAAATATT 57.299 29.630 0.00 0.00 44.83 1.28
82 83 9.701098 ATAGATGCCACATAAGCAAAAATATTG 57.299 29.630 0.00 0.00 44.83 1.90
83 84 7.784037 AGATGCCACATAAGCAAAAATATTGA 58.216 30.769 0.00 0.00 44.83 2.57
84 85 8.426489 AGATGCCACATAAGCAAAAATATTGAT 58.574 29.630 0.00 0.00 44.83 2.57
85 86 7.773864 TGCCACATAAGCAAAAATATTGATG 57.226 32.000 0.00 0.00 37.28 3.07
86 87 7.329499 TGCCACATAAGCAAAAATATTGATGT 58.671 30.769 0.00 0.00 37.28 3.06
87 88 7.278203 TGCCACATAAGCAAAAATATTGATGTG 59.722 33.333 11.50 11.50 41.53 3.21
89 90 7.623770 CACATAAGCAAAAATATTGATGTGGC 58.376 34.615 10.96 0.00 39.34 5.01
90 91 7.278203 CACATAAGCAAAAATATTGATGTGGCA 59.722 33.333 10.96 0.00 39.34 4.92
91 92 7.823310 ACATAAGCAAAAATATTGATGTGGCAA 59.177 29.630 0.00 0.00 0.00 4.52
92 93 6.730960 AAGCAAAAATATTGATGTGGCAAG 57.269 33.333 0.00 0.00 0.00 4.01
93 94 5.797051 AGCAAAAATATTGATGTGGCAAGT 58.203 33.333 0.00 0.00 0.00 3.16
94 95 6.934056 AGCAAAAATATTGATGTGGCAAGTA 58.066 32.000 0.00 0.00 0.00 2.24
95 96 7.037438 AGCAAAAATATTGATGTGGCAAGTAG 58.963 34.615 0.00 0.00 0.00 2.57
96 97 6.813152 GCAAAAATATTGATGTGGCAAGTAGT 59.187 34.615 0.00 0.00 0.00 2.73
97 98 7.331687 GCAAAAATATTGATGTGGCAAGTAGTT 59.668 33.333 0.00 0.00 0.00 2.24
98 99 9.853555 CAAAAATATTGATGTGGCAAGTAGTTA 57.146 29.630 0.00 0.00 0.00 2.24
102 103 8.978874 ATATTGATGTGGCAAGTAGTTAATGA 57.021 30.769 0.00 0.00 0.00 2.57
103 104 6.741992 TTGATGTGGCAAGTAGTTAATGAG 57.258 37.500 0.00 0.00 0.00 2.90
104 105 5.185454 TGATGTGGCAAGTAGTTAATGAGG 58.815 41.667 0.00 0.00 0.00 3.86
105 106 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
106 107 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
107 108 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
108 109 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
109 110 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
110 111 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
111 112 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
112 113 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
113 114 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
114 115 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
115 116 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
116 117 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
117 118 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
118 119 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
119 120 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
120 121 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
121 122 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
122 123 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
123 124 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
124 125 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
125 126 4.651962 AGGAGAGAGGCAAATAGAGTAACC 59.348 45.833 0.00 0.00 0.00 2.85
126 127 4.651962 GGAGAGAGGCAAATAGAGTAACCT 59.348 45.833 0.00 0.00 0.00 3.50
127 128 5.834204 GGAGAGAGGCAAATAGAGTAACCTA 59.166 44.000 0.00 0.00 0.00 3.08
128 129 6.324254 GGAGAGAGGCAAATAGAGTAACCTAA 59.676 42.308 0.00 0.00 0.00 2.69
129 130 7.015779 GGAGAGAGGCAAATAGAGTAACCTAAT 59.984 40.741 0.00 0.00 0.00 1.73
130 131 9.080097 GAGAGAGGCAAATAGAGTAACCTAATA 57.920 37.037 0.00 0.00 0.00 0.98
131 132 9.608718 AGAGAGGCAAATAGAGTAACCTAATAT 57.391 33.333 0.00 0.00 0.00 1.28
132 133 9.646427 GAGAGGCAAATAGAGTAACCTAATATG 57.354 37.037 0.00 0.00 0.00 1.78
133 134 9.160412 AGAGGCAAATAGAGTAACCTAATATGT 57.840 33.333 0.00 0.00 0.00 2.29
134 135 9.780186 GAGGCAAATAGAGTAACCTAATATGTT 57.220 33.333 0.00 0.00 0.00 2.71
143 144 9.209048 AGAGTAACCTAATATGTTACCATCACA 57.791 33.333 12.73 0.00 45.83 3.58
144 145 9.998106 GAGTAACCTAATATGTTACCATCACAT 57.002 33.333 12.73 0.00 45.83 3.21
147 148 8.848474 AACCTAATATGTTACCATCACATAGC 57.152 34.615 0.00 0.00 39.83 2.97
148 149 7.973402 ACCTAATATGTTACCATCACATAGCA 58.027 34.615 0.00 0.00 39.83 3.49
149 150 7.878127 ACCTAATATGTTACCATCACATAGCAC 59.122 37.037 0.00 0.00 39.83 4.40
150 151 8.097038 CCTAATATGTTACCATCACATAGCACT 58.903 37.037 0.00 0.00 39.83 4.40
151 152 9.494271 CTAATATGTTACCATCACATAGCACTT 57.506 33.333 0.00 0.00 39.83 3.16
152 153 8.752005 AATATGTTACCATCACATAGCACTTT 57.248 30.769 0.00 0.00 39.83 2.66
153 154 6.683974 ATGTTACCATCACATAGCACTTTC 57.316 37.500 0.00 0.00 32.88 2.62
154 155 4.941263 TGTTACCATCACATAGCACTTTCC 59.059 41.667 0.00 0.00 0.00 3.13
155 156 3.719268 ACCATCACATAGCACTTTCCA 57.281 42.857 0.00 0.00 0.00 3.53
156 157 4.032960 ACCATCACATAGCACTTTCCAA 57.967 40.909 0.00 0.00 0.00 3.53
157 158 4.603131 ACCATCACATAGCACTTTCCAAT 58.397 39.130 0.00 0.00 0.00 3.16
158 159 4.400251 ACCATCACATAGCACTTTCCAATG 59.600 41.667 0.00 0.00 0.00 2.82
159 160 4.357142 CATCACATAGCACTTTCCAATGC 58.643 43.478 0.00 0.00 42.39 3.56
160 161 3.419943 TCACATAGCACTTTCCAATGCA 58.580 40.909 0.00 0.00 44.59 3.96
161 162 3.825585 TCACATAGCACTTTCCAATGCAA 59.174 39.130 0.00 0.00 44.59 4.08
162 163 4.280425 TCACATAGCACTTTCCAATGCAAA 59.720 37.500 0.00 0.00 44.59 3.68
163 164 4.989797 CACATAGCACTTTCCAATGCAAAA 59.010 37.500 0.00 0.00 44.59 2.44
164 165 5.640357 CACATAGCACTTTCCAATGCAAAAT 59.360 36.000 0.00 0.00 44.59 1.82
165 166 5.640357 ACATAGCACTTTCCAATGCAAAATG 59.360 36.000 0.00 2.64 44.59 2.32
166 167 4.339872 AGCACTTTCCAATGCAAAATGA 57.660 36.364 0.00 0.00 44.59 2.57
167 168 4.312443 AGCACTTTCCAATGCAAAATGAG 58.688 39.130 0.00 0.00 44.59 2.90
168 169 4.060205 GCACTTTCCAATGCAAAATGAGT 58.940 39.130 0.00 0.00 41.65 3.41
169 170 4.151157 GCACTTTCCAATGCAAAATGAGTC 59.849 41.667 0.00 0.00 41.65 3.36
170 171 5.535333 CACTTTCCAATGCAAAATGAGTCT 58.465 37.500 0.00 0.00 0.00 3.24
171 172 6.680810 CACTTTCCAATGCAAAATGAGTCTA 58.319 36.000 0.00 0.00 0.00 2.59
172 173 6.583806 CACTTTCCAATGCAAAATGAGTCTAC 59.416 38.462 0.00 0.00 0.00 2.59
173 174 6.265196 ACTTTCCAATGCAAAATGAGTCTACA 59.735 34.615 0.00 0.00 0.00 2.74
174 175 6.647334 TTCCAATGCAAAATGAGTCTACAA 57.353 33.333 0.00 0.00 0.00 2.41
175 176 6.258230 TCCAATGCAAAATGAGTCTACAAG 57.742 37.500 0.00 0.00 0.00 3.16
176 177 6.003326 TCCAATGCAAAATGAGTCTACAAGA 58.997 36.000 0.00 0.00 0.00 3.02
177 178 6.660521 TCCAATGCAAAATGAGTCTACAAGAT 59.339 34.615 0.00 0.00 0.00 2.40
178 179 7.828717 TCCAATGCAAAATGAGTCTACAAGATA 59.171 33.333 0.00 0.00 0.00 1.98
179 180 8.461222 CCAATGCAAAATGAGTCTACAAGATAA 58.539 33.333 0.00 0.00 0.00 1.75
217 218 9.582431 GTGTATGTTACTACACATATGACACTT 57.418 33.333 10.38 0.00 46.94 3.16
218 219 9.797556 TGTATGTTACTACACATATGACACTTC 57.202 33.333 10.38 0.00 40.85 3.01
222 223 9.850628 TGTTACTACACATATGACACTTCTTAC 57.149 33.333 10.38 0.00 0.00 2.34
230 231 9.698309 CACATATGACACTTCTTACTATAAGGG 57.302 37.037 10.38 0.00 32.20 3.95
231 232 9.435570 ACATATGACACTTCTTACTATAAGGGT 57.564 33.333 10.38 0.00 41.97 4.34
236 237 9.979897 TGACACTTCTTACTATAAGGGTAGTAA 57.020 33.333 6.41 6.41 39.42 2.24
314 315 8.426881 TGCATATTACTACTTATTTTCACGCA 57.573 30.769 0.00 0.00 0.00 5.24
315 316 8.547894 TGCATATTACTACTTATTTTCACGCAG 58.452 33.333 0.00 0.00 0.00 5.18
316 317 7.530861 GCATATTACTACTTATTTTCACGCAGC 59.469 37.037 0.00 0.00 0.00 5.25
317 318 5.789710 TTACTACTTATTTTCACGCAGCC 57.210 39.130 0.00 0.00 0.00 4.85
318 319 3.007635 ACTACTTATTTTCACGCAGCCC 58.992 45.455 0.00 0.00 0.00 5.19
319 320 1.904287 ACTTATTTTCACGCAGCCCA 58.096 45.000 0.00 0.00 0.00 5.36
320 321 2.446435 ACTTATTTTCACGCAGCCCAT 58.554 42.857 0.00 0.00 0.00 4.00
321 322 2.423538 ACTTATTTTCACGCAGCCCATC 59.576 45.455 0.00 0.00 0.00 3.51
322 323 2.418368 TATTTTCACGCAGCCCATCT 57.582 45.000 0.00 0.00 0.00 2.90
323 324 1.549203 ATTTTCACGCAGCCCATCTT 58.451 45.000 0.00 0.00 0.00 2.40
324 325 2.192664 TTTTCACGCAGCCCATCTTA 57.807 45.000 0.00 0.00 0.00 2.10
325 326 2.192664 TTTCACGCAGCCCATCTTAA 57.807 45.000 0.00 0.00 0.00 1.85
326 327 1.737838 TTCACGCAGCCCATCTTAAG 58.262 50.000 0.00 0.00 0.00 1.85
327 328 0.744414 TCACGCAGCCCATCTTAAGC 60.744 55.000 0.00 0.00 0.00 3.09
328 329 1.452108 ACGCAGCCCATCTTAAGCC 60.452 57.895 0.00 0.00 0.00 4.35
329 330 1.451927 CGCAGCCCATCTTAAGCCA 60.452 57.895 0.00 0.00 0.00 4.75
330 331 0.820891 CGCAGCCCATCTTAAGCCAT 60.821 55.000 0.00 0.00 0.00 4.40
331 332 0.957362 GCAGCCCATCTTAAGCCATC 59.043 55.000 0.00 0.00 0.00 3.51
332 333 1.751733 GCAGCCCATCTTAAGCCATCA 60.752 52.381 0.00 0.00 0.00 3.07
333 334 2.872732 CAGCCCATCTTAAGCCATCAT 58.127 47.619 0.00 0.00 0.00 2.45
334 335 3.811810 GCAGCCCATCTTAAGCCATCATA 60.812 47.826 0.00 0.00 0.00 2.15
335 336 4.401022 CAGCCCATCTTAAGCCATCATAA 58.599 43.478 0.00 0.00 0.00 1.90
336 337 5.014858 CAGCCCATCTTAAGCCATCATAAT 58.985 41.667 0.00 0.00 0.00 1.28
337 338 5.479375 CAGCCCATCTTAAGCCATCATAATT 59.521 40.000 0.00 0.00 0.00 1.40
338 339 6.014840 CAGCCCATCTTAAGCCATCATAATTT 60.015 38.462 0.00 0.00 0.00 1.82
339 340 7.177216 CAGCCCATCTTAAGCCATCATAATTTA 59.823 37.037 0.00 0.00 0.00 1.40
340 341 7.729881 AGCCCATCTTAAGCCATCATAATTTAA 59.270 33.333 0.00 0.00 0.00 1.52
341 342 8.031277 GCCCATCTTAAGCCATCATAATTTAAG 58.969 37.037 0.00 0.00 34.33 1.85
342 343 8.031277 CCCATCTTAAGCCATCATAATTTAAGC 58.969 37.037 0.00 0.00 33.51 3.09
343 344 8.800332 CCATCTTAAGCCATCATAATTTAAGCT 58.200 33.333 0.00 0.00 33.51 3.74
344 345 9.622004 CATCTTAAGCCATCATAATTTAAGCTG 57.378 33.333 0.00 0.00 33.51 4.24
345 346 8.978874 TCTTAAGCCATCATAATTTAAGCTGA 57.021 30.769 0.00 0.00 33.51 4.26
346 347 9.578576 TCTTAAGCCATCATAATTTAAGCTGAT 57.421 29.630 0.00 0.00 33.51 2.90
347 348 9.837525 CTTAAGCCATCATAATTTAAGCTGATC 57.162 33.333 0.00 0.00 0.00 2.92
348 349 7.828508 AAGCCATCATAATTTAAGCTGATCA 57.171 32.000 0.00 0.00 0.00 2.92
349 350 7.828508 AGCCATCATAATTTAAGCTGATCAA 57.171 32.000 0.00 0.00 0.00 2.57
350 351 8.241497 AGCCATCATAATTTAAGCTGATCAAA 57.759 30.769 0.00 0.00 0.00 2.69
351 352 8.698210 AGCCATCATAATTTAAGCTGATCAAAA 58.302 29.630 0.00 0.00 0.00 2.44
352 353 8.758715 GCCATCATAATTTAAGCTGATCAAAAC 58.241 33.333 0.00 0.00 0.00 2.43
353 354 9.806203 CCATCATAATTTAAGCTGATCAAAACA 57.194 29.630 0.00 0.00 0.00 2.83
366 367 9.860898 AGCTGATCAAAACAATTAAATTAGTCC 57.139 29.630 0.00 0.00 0.00 3.85
367 368 9.860898 GCTGATCAAAACAATTAAATTAGTCCT 57.139 29.630 0.00 0.00 0.00 3.85
369 370 9.638239 TGATCAAAACAATTAAATTAGTCCTGC 57.362 29.630 0.00 0.00 0.00 4.85
370 371 9.860898 GATCAAAACAATTAAATTAGTCCTGCT 57.139 29.630 0.00 0.00 0.00 4.24
377 378 9.515226 ACAATTAAATTAGTCCTGCTTTAGTGA 57.485 29.630 0.00 0.00 0.00 3.41
378 379 9.994432 CAATTAAATTAGTCCTGCTTTAGTGAG 57.006 33.333 0.00 0.00 0.00 3.51
379 380 7.611213 TTAAATTAGTCCTGCTTTAGTGAGC 57.389 36.000 0.00 0.00 43.00 4.26
380 381 3.611766 TTAGTCCTGCTTTAGTGAGCC 57.388 47.619 0.00 0.00 42.01 4.70
381 382 1.352083 AGTCCTGCTTTAGTGAGCCA 58.648 50.000 0.00 0.00 42.01 4.75
382 383 1.002544 AGTCCTGCTTTAGTGAGCCAC 59.997 52.381 0.00 0.00 42.01 5.01
383 384 1.055849 TCCTGCTTTAGTGAGCCACA 58.944 50.000 7.86 0.00 42.01 4.17
393 394 2.770164 GTGAGCCACACCTCTATTGT 57.230 50.000 0.85 0.00 43.05 2.71
394 395 3.887621 GTGAGCCACACCTCTATTGTA 57.112 47.619 0.85 0.00 43.05 2.41
395 396 4.202245 GTGAGCCACACCTCTATTGTAA 57.798 45.455 0.85 0.00 43.05 2.41
396 397 4.575885 GTGAGCCACACCTCTATTGTAAA 58.424 43.478 0.85 0.00 43.05 2.01
397 398 5.001232 GTGAGCCACACCTCTATTGTAAAA 58.999 41.667 0.85 0.00 43.05 1.52
398 399 5.122396 GTGAGCCACACCTCTATTGTAAAAG 59.878 44.000 0.85 0.00 43.05 2.27
399 400 5.221843 TGAGCCACACCTCTATTGTAAAAGT 60.222 40.000 0.00 0.00 33.02 2.66
400 401 5.631119 AGCCACACCTCTATTGTAAAAGTT 58.369 37.500 0.00 0.00 0.00 2.66
401 402 6.068670 AGCCACACCTCTATTGTAAAAGTTT 58.931 36.000 0.00 0.00 0.00 2.66
402 403 7.228590 AGCCACACCTCTATTGTAAAAGTTTA 58.771 34.615 0.00 0.00 0.00 2.01
403 404 7.722285 AGCCACACCTCTATTGTAAAAGTTTAA 59.278 33.333 0.00 0.00 0.00 1.52
404 405 8.021396 GCCACACCTCTATTGTAAAAGTTTAAG 58.979 37.037 0.00 0.00 0.00 1.85
405 406 8.021396 CCACACCTCTATTGTAAAAGTTTAAGC 58.979 37.037 0.00 0.00 0.00 3.09
406 407 8.784043 CACACCTCTATTGTAAAAGTTTAAGCT 58.216 33.333 0.00 0.00 0.00 3.74
439 440 9.669024 AATAATTATATTAGCTTTGGTTGGGGT 57.331 29.630 0.00 0.00 29.85 4.95
440 441 6.976934 ATTATATTAGCTTTGGTTGGGGTG 57.023 37.500 0.00 0.00 0.00 4.61
441 442 1.266178 ATTAGCTTTGGTTGGGGTGC 58.734 50.000 0.00 0.00 0.00 5.01
442 443 0.105964 TTAGCTTTGGTTGGGGTGCA 60.106 50.000 0.00 0.00 0.00 4.57
443 444 0.825840 TAGCTTTGGTTGGGGTGCAC 60.826 55.000 8.80 8.80 0.00 4.57
444 445 2.430610 GCTTTGGTTGGGGTGCACA 61.431 57.895 20.43 0.00 0.00 4.57
445 446 1.965754 GCTTTGGTTGGGGTGCACAA 61.966 55.000 20.43 0.97 0.00 3.33
446 447 0.179086 CTTTGGTTGGGGTGCACAAC 60.179 55.000 20.43 14.26 45.60 3.32
456 457 3.944871 GTGCACAACACCTGGAAAG 57.055 52.632 13.17 0.00 44.02 2.62
457 458 1.102978 GTGCACAACACCTGGAAAGT 58.897 50.000 13.17 0.00 44.02 2.66
458 459 1.476488 GTGCACAACACCTGGAAAGTT 59.524 47.619 13.17 0.00 44.02 2.66
459 460 2.094234 GTGCACAACACCTGGAAAGTTT 60.094 45.455 13.17 0.00 44.02 2.66
460 461 3.129638 GTGCACAACACCTGGAAAGTTTA 59.870 43.478 13.17 0.00 44.02 2.01
461 462 3.764434 TGCACAACACCTGGAAAGTTTAA 59.236 39.130 0.00 0.00 0.00 1.52
462 463 4.142271 TGCACAACACCTGGAAAGTTTAAG 60.142 41.667 0.00 0.00 0.00 1.85
463 464 4.359706 CACAACACCTGGAAAGTTTAAGC 58.640 43.478 0.00 0.00 0.00 3.09
464 465 4.020543 ACAACACCTGGAAAGTTTAAGCA 58.979 39.130 0.00 0.00 0.00 3.91
465 466 4.649218 ACAACACCTGGAAAGTTTAAGCAT 59.351 37.500 0.00 0.00 0.00 3.79
466 467 5.830991 ACAACACCTGGAAAGTTTAAGCATA 59.169 36.000 0.00 0.00 0.00 3.14
467 468 6.493458 ACAACACCTGGAAAGTTTAAGCATAT 59.507 34.615 0.00 0.00 0.00 1.78
468 469 6.759497 ACACCTGGAAAGTTTAAGCATATC 57.241 37.500 0.00 0.00 0.00 1.63
469 470 5.652452 ACACCTGGAAAGTTTAAGCATATCC 59.348 40.000 0.00 0.00 0.00 2.59
470 471 5.652014 CACCTGGAAAGTTTAAGCATATCCA 59.348 40.000 0.00 9.31 34.52 3.41
475 476 8.415950 TGGAAAGTTTAAGCATATCCAGAAAA 57.584 30.769 6.64 0.00 32.10 2.29
476 477 8.303876 TGGAAAGTTTAAGCATATCCAGAAAAC 58.696 33.333 6.64 0.00 32.10 2.43
477 478 8.303876 GGAAAGTTTAAGCATATCCAGAAAACA 58.696 33.333 0.00 0.00 0.00 2.83
478 479 9.129209 GAAAGTTTAAGCATATCCAGAAAACAC 57.871 33.333 0.00 0.00 0.00 3.32
479 480 6.842163 AGTTTAAGCATATCCAGAAAACACG 58.158 36.000 0.00 0.00 0.00 4.49
480 481 6.430000 AGTTTAAGCATATCCAGAAAACACGT 59.570 34.615 0.00 0.00 0.00 4.49
481 482 6.811253 TTAAGCATATCCAGAAAACACGTT 57.189 33.333 0.00 0.00 0.00 3.99
482 483 4.946784 AGCATATCCAGAAAACACGTTC 57.053 40.909 0.00 0.00 0.00 3.95
483 484 3.689649 AGCATATCCAGAAAACACGTTCC 59.310 43.478 0.00 0.00 0.00 3.62
484 485 3.438781 GCATATCCAGAAAACACGTTCCA 59.561 43.478 0.00 0.00 0.00 3.53
485 486 4.096382 GCATATCCAGAAAACACGTTCCAT 59.904 41.667 0.00 0.00 0.00 3.41
486 487 5.730568 GCATATCCAGAAAACACGTTCCATC 60.731 44.000 0.00 0.00 0.00 3.51
487 488 2.500229 TCCAGAAAACACGTTCCATCC 58.500 47.619 0.00 0.00 0.00 3.51
488 489 2.105821 TCCAGAAAACACGTTCCATCCT 59.894 45.455 0.00 0.00 0.00 3.24
489 490 2.484264 CCAGAAAACACGTTCCATCCTC 59.516 50.000 0.00 0.00 0.00 3.71
490 491 2.484264 CAGAAAACACGTTCCATCCTCC 59.516 50.000 0.00 0.00 0.00 4.30
491 492 2.105821 AGAAAACACGTTCCATCCTCCA 59.894 45.455 0.00 0.00 0.00 3.86
492 493 2.879103 AAACACGTTCCATCCTCCAT 57.121 45.000 0.00 0.00 0.00 3.41
493 494 2.879103 AACACGTTCCATCCTCCATT 57.121 45.000 0.00 0.00 0.00 3.16
494 495 3.992943 AACACGTTCCATCCTCCATTA 57.007 42.857 0.00 0.00 0.00 1.90
495 496 3.261981 ACACGTTCCATCCTCCATTAC 57.738 47.619 0.00 0.00 0.00 1.89
496 497 2.569853 ACACGTTCCATCCTCCATTACA 59.430 45.455 0.00 0.00 0.00 2.41
497 498 3.008594 ACACGTTCCATCCTCCATTACAA 59.991 43.478 0.00 0.00 0.00 2.41
498 499 4.006989 CACGTTCCATCCTCCATTACAAA 58.993 43.478 0.00 0.00 0.00 2.83
499 500 4.640201 CACGTTCCATCCTCCATTACAAAT 59.360 41.667 0.00 0.00 0.00 2.32
500 501 5.125417 CACGTTCCATCCTCCATTACAAATT 59.875 40.000 0.00 0.00 0.00 1.82
501 502 6.317642 CACGTTCCATCCTCCATTACAAATTA 59.682 38.462 0.00 0.00 0.00 1.40
502 503 6.887545 ACGTTCCATCCTCCATTACAAATTAA 59.112 34.615 0.00 0.00 0.00 1.40
503 504 7.559897 ACGTTCCATCCTCCATTACAAATTAAT 59.440 33.333 0.00 0.00 0.00 1.40
504 505 8.413229 CGTTCCATCCTCCATTACAAATTAATT 58.587 33.333 0.00 0.00 0.00 1.40
505 506 9.533253 GTTCCATCCTCCATTACAAATTAATTG 57.467 33.333 0.39 0.00 44.95 2.32
506 507 9.486123 TTCCATCCTCCATTACAAATTAATTGA 57.514 29.630 0.39 0.00 41.85 2.57
507 508 8.912988 TCCATCCTCCATTACAAATTAATTGAC 58.087 33.333 0.39 0.00 41.85 3.18
508 509 8.143835 CCATCCTCCATTACAAATTAATTGACC 58.856 37.037 0.39 0.00 41.85 4.02
509 510 8.917088 CATCCTCCATTACAAATTAATTGACCT 58.083 33.333 0.39 0.00 41.85 3.85
510 511 8.519799 TCCTCCATTACAAATTAATTGACCTC 57.480 34.615 0.39 0.00 41.85 3.85
511 512 7.559897 TCCTCCATTACAAATTAATTGACCTCC 59.440 37.037 0.39 0.00 41.85 4.30
512 513 7.341769 CCTCCATTACAAATTAATTGACCTCCA 59.658 37.037 0.39 0.00 41.85 3.86
513 514 8.837099 TCCATTACAAATTAATTGACCTCCAT 57.163 30.769 0.39 0.00 41.85 3.41
514 515 9.265862 TCCATTACAAATTAATTGACCTCCATT 57.734 29.630 0.39 0.00 41.85 3.16
515 516 9.889128 CCATTACAAATTAATTGACCTCCATTT 57.111 29.630 0.39 0.00 41.85 2.32
541 542 7.941431 ACTAGATACAAATATACTCCCTCCG 57.059 40.000 0.00 0.00 0.00 4.63
542 543 7.468496 ACTAGATACAAATATACTCCCTCCGT 58.532 38.462 0.00 0.00 0.00 4.69
543 544 6.837471 AGATACAAATATACTCCCTCCGTC 57.163 41.667 0.00 0.00 0.00 4.79
544 545 5.715753 AGATACAAATATACTCCCTCCGTCC 59.284 44.000 0.00 0.00 0.00 4.79
545 546 2.626743 ACAAATATACTCCCTCCGTCCG 59.373 50.000 0.00 0.00 0.00 4.79
546 547 1.920610 AATATACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
547 548 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
548 549 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
549 550 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
550 551 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
551 552 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
552 553 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
553 554 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
554 555 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
555 556 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
556 557 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
557 558 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
558 559 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
559 560 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
560 561 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
561 562 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
562 563 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
563 564 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
564 565 5.628134 GTCCGGAAATACTTGTCATCAAAC 58.372 41.667 5.23 0.00 32.87 2.93
565 566 5.411669 GTCCGGAAATACTTGTCATCAAACT 59.588 40.000 5.23 0.00 32.87 2.66
566 567 6.592607 GTCCGGAAATACTTGTCATCAAACTA 59.407 38.462 5.23 0.00 32.87 2.24
567 568 6.816640 TCCGGAAATACTTGTCATCAAACTAG 59.183 38.462 0.00 0.00 32.87 2.57
568 569 6.816640 CCGGAAATACTTGTCATCAAACTAGA 59.183 38.462 0.00 0.00 32.87 2.43
569 570 7.495934 CCGGAAATACTTGTCATCAAACTAGAT 59.504 37.037 0.00 0.00 32.87 1.98
570 571 9.529325 CGGAAATACTTGTCATCAAACTAGATA 57.471 33.333 0.00 0.00 32.87 1.98
576 577 8.567285 ACTTGTCATCAAACTAGATAAAAGGG 57.433 34.615 0.00 0.00 32.87 3.95
577 578 7.611855 ACTTGTCATCAAACTAGATAAAAGGGG 59.388 37.037 0.00 0.00 32.87 4.79
578 579 7.265599 TGTCATCAAACTAGATAAAAGGGGA 57.734 36.000 0.00 0.00 0.00 4.81
579 580 7.872138 TGTCATCAAACTAGATAAAAGGGGAT 58.128 34.615 0.00 0.00 0.00 3.85
580 581 7.775093 TGTCATCAAACTAGATAAAAGGGGATG 59.225 37.037 0.00 0.00 0.00 3.51
581 582 7.775561 GTCATCAAACTAGATAAAAGGGGATGT 59.224 37.037 0.00 0.00 32.47 3.06
582 583 8.998814 TCATCAAACTAGATAAAAGGGGATGTA 58.001 33.333 0.00 0.00 32.47 2.29
583 584 9.799106 CATCAAACTAGATAAAAGGGGATGTAT 57.201 33.333 0.00 0.00 0.00 2.29
584 585 9.799106 ATCAAACTAGATAAAAGGGGATGTATG 57.201 33.333 0.00 0.00 0.00 2.39
585 586 8.778059 TCAAACTAGATAAAAGGGGATGTATGT 58.222 33.333 0.00 0.00 0.00 2.29
588 589 9.670442 AACTAGATAAAAGGGGATGTATGTAGA 57.330 33.333 0.00 0.00 0.00 2.59
589 590 9.845214 ACTAGATAAAAGGGGATGTATGTAGAT 57.155 33.333 0.00 0.00 0.00 1.98
591 592 8.511748 AGATAAAAGGGGATGTATGTAGATGT 57.488 34.615 0.00 0.00 0.00 3.06
592 593 9.615660 AGATAAAAGGGGATGTATGTAGATGTA 57.384 33.333 0.00 0.00 0.00 2.29
596 597 9.936329 AAAAGGGGATGTATGTAGATGTATTTT 57.064 29.630 0.00 0.00 0.00 1.82
599 600 9.393786 AGGGGATGTATGTAGATGTATTTTAGT 57.606 33.333 0.00 0.00 0.00 2.24
637 638 9.918630 CTCTTTTTATCCATTTTCATGACAAGT 57.081 29.630 0.00 0.00 31.07 3.16
644 645 8.915871 ATCCATTTTCATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 31.07 3.46
645 646 7.312154 TCCATTTTCATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 31.07 4.30
646 647 7.175816 TCCATTTTCATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 31.07 4.55
647 648 7.273381 CCATTTTCATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 31.07 4.79
648 649 5.524511 TTCATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
649 650 3.930229 TCATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
650 651 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
651 652 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
652 653 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
653 654 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
654 655 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
655 656 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
656 657 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
657 658 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
658 659 1.631405 TTTTCGGACGGAGGGAGTAA 58.369 50.000 0.00 0.00 0.00 2.24
659 660 1.856629 TTTCGGACGGAGGGAGTAAT 58.143 50.000 0.00 0.00 0.00 1.89
660 661 2.734755 TTCGGACGGAGGGAGTAATA 57.265 50.000 0.00 0.00 0.00 0.98
661 662 2.267174 TCGGACGGAGGGAGTAATAG 57.733 55.000 0.00 0.00 0.00 1.73
662 663 1.770658 TCGGACGGAGGGAGTAATAGA 59.229 52.381 0.00 0.00 0.00 1.98
663 664 2.374504 TCGGACGGAGGGAGTAATAGAT 59.625 50.000 0.00 0.00 0.00 1.98
664 665 3.584406 TCGGACGGAGGGAGTAATAGATA 59.416 47.826 0.00 0.00 0.00 1.98
665 666 4.226846 TCGGACGGAGGGAGTAATAGATAT 59.773 45.833 0.00 0.00 0.00 1.63
666 667 5.426509 TCGGACGGAGGGAGTAATAGATATA 59.573 44.000 0.00 0.00 0.00 0.86
667 668 5.526846 CGGACGGAGGGAGTAATAGATATAC 59.473 48.000 0.00 0.00 0.00 1.47
668 669 6.421485 GGACGGAGGGAGTAATAGATATACA 58.579 44.000 0.00 0.00 0.00 2.29
669 670 7.061688 GGACGGAGGGAGTAATAGATATACAT 58.938 42.308 0.00 0.00 0.00 2.29
670 671 8.216423 GGACGGAGGGAGTAATAGATATACATA 58.784 40.741 0.00 0.00 0.00 2.29
671 672 9.796180 GACGGAGGGAGTAATAGATATACATAT 57.204 37.037 0.00 0.00 0.00 1.78
694 695 7.807977 ATACATTTGTAGCTAGTGAAATGGG 57.192 36.000 23.74 10.51 39.21 4.00
696 697 6.245408 ACATTTGTAGCTAGTGAAATGGGAA 58.755 36.000 23.74 1.63 39.21 3.97
701 702 6.662755 TGTAGCTAGTGAAATGGGAATCAAT 58.337 36.000 0.00 0.00 0.00 2.57
712 713 8.330247 TGAAATGGGAATCAATCAATTTGGAAT 58.670 29.630 0.00 0.00 35.92 3.01
713 714 9.181061 GAAATGGGAATCAATCAATTTGGAATT 57.819 29.630 0.00 0.00 35.92 2.17
718 719 7.716560 GGGAATCAATCAATTTGGAATTAAGGG 59.283 37.037 0.00 0.00 35.92 3.95
723 724 8.966868 TCAATCAATTTGGAATTAAGGGAGTAC 58.033 33.333 0.00 0.00 35.92 2.73
728 729 7.803279 ATTTGGAATTAAGGGAGTACGAATC 57.197 36.000 0.00 0.00 0.00 2.52
729 730 5.943349 TGGAATTAAGGGAGTACGAATCA 57.057 39.130 0.00 0.00 0.00 2.57
736 737 1.202382 GGGAGTACGAATCAGAACGGG 60.202 57.143 0.00 0.00 0.00 5.28
763 771 2.335933 CCCCTCCATTTATACCCGTCT 58.664 52.381 0.00 0.00 0.00 4.18
770 778 3.899360 CCATTTATACCCGTCTGACCCTA 59.101 47.826 1.55 0.00 0.00 3.53
771 779 4.021368 CCATTTATACCCGTCTGACCCTAG 60.021 50.000 1.55 0.00 0.00 3.02
813 821 0.533951 GTGGGACTAATCGAACCGGT 59.466 55.000 0.00 0.00 0.00 5.28
857 865 4.475527 GACCGTTTGGGCAGAAGT 57.524 55.556 0.00 0.00 45.78 3.01
883 891 3.350219 AGCCCAGCGAGAAGATAAAAA 57.650 42.857 0.00 0.00 0.00 1.94
1014 1023 1.064296 GACGATGTCGGCGATGACT 59.936 57.895 14.79 0.00 44.95 3.41
1162 1171 1.150135 ACTTCTCCCTCTCCAAGTGGA 59.850 52.381 0.00 0.00 43.08 4.02
1201 1210 2.188817 AGCCCAGTAAGTTCCTCGATT 58.811 47.619 0.00 0.00 0.00 3.34
1218 1227 2.099921 CGATTCGATCAAGTCCCTGTCT 59.900 50.000 0.00 0.00 0.00 3.41
1249 1258 0.178975 TCCGGTTTGATTTGCCTGGT 60.179 50.000 0.00 0.00 0.00 4.00
1250 1259 0.243636 CCGGTTTGATTTGCCTGGTC 59.756 55.000 0.00 0.00 0.00 4.02
1285 1294 0.539986 GGGTTCGTGGATCTGGCTTA 59.460 55.000 0.00 0.00 0.00 3.09
1317 1326 2.467880 TGTGGATCTTGGTCTAGGTCC 58.532 52.381 5.04 5.04 44.34 4.46
1328 1337 1.823610 GTCTAGGTCCAGCGGTTTACT 59.176 52.381 0.00 0.00 0.00 2.24
1369 1383 6.410942 TGGATTGAATACGATCTGATCAGT 57.589 37.500 21.92 16.27 37.17 3.41
1371 1385 6.040842 TGGATTGAATACGATCTGATCAGTGA 59.959 38.462 21.92 4.80 37.17 3.41
1376 1390 7.664758 TGAATACGATCTGATCAGTGATGATT 58.335 34.615 21.92 15.94 0.00 2.57
1412 1426 1.702299 CCGTCGCGTGAATCTGTTC 59.298 57.895 5.77 0.00 34.85 3.18
1549 1563 8.826710 CATACGCAAAAGGATGATCTTAAAGTA 58.173 33.333 0.00 0.00 0.00 2.24
1575 1593 9.672673 AAGCTGTCAGTGTAATATACAAGATTT 57.327 29.630 0.93 0.00 40.93 2.17
1589 1607 4.539870 ACAAGATTTTTGTGTCATCTGCG 58.460 39.130 0.00 0.00 0.00 5.18
1590 1608 3.837213 AGATTTTTGTGTCATCTGCGG 57.163 42.857 0.00 0.00 0.00 5.69
1591 1609 2.095059 AGATTTTTGTGTCATCTGCGGC 60.095 45.455 0.00 0.00 0.00 6.53
1730 1749 9.118300 ACTTATTTGCTGGAAAATAGAGATGAG 57.882 33.333 11.38 0.00 34.39 2.90
1787 1806 1.550976 CCTACCCTGAGTGTGACCTTC 59.449 57.143 0.00 0.00 0.00 3.46
1893 1913 6.666113 TGTTCCTTTAAAACCAGGAGAAACTT 59.334 34.615 0.00 0.00 40.43 2.66
1957 1977 5.395657 CCACCTGAACTTCTATGCAGTCATA 60.396 44.000 0.00 0.00 34.22 2.15
2105 2127 6.876789 TGCTAACGATAAAGAAACCTCATGAA 59.123 34.615 0.00 0.00 0.00 2.57
2106 2128 7.552687 TGCTAACGATAAAGAAACCTCATGAAT 59.447 33.333 0.00 0.00 0.00 2.57
2139 2161 5.955959 TGTGCAAGTCTACTAATAGAGGGAA 59.044 40.000 0.00 0.00 38.14 3.97
2183 2205 3.947626 TGTAGTTTTCACTTTTCAGCGC 58.052 40.909 0.00 0.00 34.06 5.92
2241 2263 7.719633 GCCTCAAGATTTGTCATACCCTATTTA 59.280 37.037 0.00 0.00 0.00 1.40
2264 2286 4.760530 ATGATACAGAGCTGGTAGCAAA 57.239 40.909 14.73 0.00 45.56 3.68
2286 2308 2.092699 AGCAGAGGGAGTTTATTCAGCC 60.093 50.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.803082 CCAGCCAACACCATCGCG 61.803 66.667 0.00 0.00 0.00 5.87
1 2 2.813226 TACCCAGCCAACACCATCGC 62.813 60.000 0.00 0.00 0.00 4.58
2 3 0.322098 TTACCCAGCCAACACCATCG 60.322 55.000 0.00 0.00 0.00 3.84
3 4 1.463674 CTTACCCAGCCAACACCATC 58.536 55.000 0.00 0.00 0.00 3.51
4 5 0.039618 CCTTACCCAGCCAACACCAT 59.960 55.000 0.00 0.00 0.00 3.55
5 6 1.063070 TCCTTACCCAGCCAACACCA 61.063 55.000 0.00 0.00 0.00 4.17
6 7 0.331616 ATCCTTACCCAGCCAACACC 59.668 55.000 0.00 0.00 0.00 4.16
7 8 1.463674 CATCCTTACCCAGCCAACAC 58.536 55.000 0.00 0.00 0.00 3.32
8 9 0.331278 CCATCCTTACCCAGCCAACA 59.669 55.000 0.00 0.00 0.00 3.33
9 10 0.331616 ACCATCCTTACCCAGCCAAC 59.668 55.000 0.00 0.00 0.00 3.77
10 11 0.623723 GACCATCCTTACCCAGCCAA 59.376 55.000 0.00 0.00 0.00 4.52
11 12 0.548926 TGACCATCCTTACCCAGCCA 60.549 55.000 0.00 0.00 0.00 4.75
12 13 0.846693 ATGACCATCCTTACCCAGCC 59.153 55.000 0.00 0.00 0.00 4.85
13 14 2.706190 ACTATGACCATCCTTACCCAGC 59.294 50.000 0.00 0.00 0.00 4.85
14 15 3.071602 CCACTATGACCATCCTTACCCAG 59.928 52.174 0.00 0.00 0.00 4.45
15 16 3.045634 CCACTATGACCATCCTTACCCA 58.954 50.000 0.00 0.00 0.00 4.51
16 17 2.372172 CCCACTATGACCATCCTTACCC 59.628 54.545 0.00 0.00 0.00 3.69
17 18 3.314693 TCCCACTATGACCATCCTTACC 58.685 50.000 0.00 0.00 0.00 2.85
18 19 3.967987 ACTCCCACTATGACCATCCTTAC 59.032 47.826 0.00 0.00 0.00 2.34
19 20 4.280789 ACTCCCACTATGACCATCCTTA 57.719 45.455 0.00 0.00 0.00 2.69
20 21 3.136641 ACTCCCACTATGACCATCCTT 57.863 47.619 0.00 0.00 0.00 3.36
21 22 2.877154 ACTCCCACTATGACCATCCT 57.123 50.000 0.00 0.00 0.00 3.24
22 23 3.709653 TGTTACTCCCACTATGACCATCC 59.290 47.826 0.00 0.00 0.00 3.51
23 24 5.552870 ATGTTACTCCCACTATGACCATC 57.447 43.478 0.00 0.00 0.00 3.51
24 25 5.544176 CCTATGTTACTCCCACTATGACCAT 59.456 44.000 0.00 0.00 0.00 3.55
25 26 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
26 27 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
27 28 7.069085 TGTTACCTATGTTACTCCCACTATGAC 59.931 40.741 0.00 0.00 0.00 3.06
28 29 7.127405 TGTTACCTATGTTACTCCCACTATGA 58.873 38.462 0.00 0.00 0.00 2.15
29 30 7.356089 TGTTACCTATGTTACTCCCACTATG 57.644 40.000 0.00 0.00 0.00 2.23
30 31 7.400915 TGTTGTTACCTATGTTACTCCCACTAT 59.599 37.037 0.00 0.00 0.00 2.12
31 32 6.725369 TGTTGTTACCTATGTTACTCCCACTA 59.275 38.462 0.00 0.00 0.00 2.74
32 33 5.544948 TGTTGTTACCTATGTTACTCCCACT 59.455 40.000 0.00 0.00 0.00 4.00
33 34 5.797051 TGTTGTTACCTATGTTACTCCCAC 58.203 41.667 0.00 0.00 0.00 4.61
34 35 6.630203 ATGTTGTTACCTATGTTACTCCCA 57.370 37.500 0.00 0.00 0.00 4.37
35 36 8.015185 TCTATGTTGTTACCTATGTTACTCCC 57.985 38.462 0.00 0.00 0.00 4.30
36 37 9.477484 CATCTATGTTGTTACCTATGTTACTCC 57.523 37.037 0.00 0.00 0.00 3.85
37 38 8.979574 GCATCTATGTTGTTACCTATGTTACTC 58.020 37.037 0.00 0.00 0.00 2.59
38 39 7.931948 GGCATCTATGTTGTTACCTATGTTACT 59.068 37.037 0.00 0.00 0.00 2.24
39 40 7.713507 TGGCATCTATGTTGTTACCTATGTTAC 59.286 37.037 0.00 0.00 0.00 2.50
40 41 7.713507 GTGGCATCTATGTTGTTACCTATGTTA 59.286 37.037 0.00 0.00 0.00 2.41
41 42 6.542370 GTGGCATCTATGTTGTTACCTATGTT 59.458 38.462 0.00 0.00 0.00 2.71
42 43 6.055588 GTGGCATCTATGTTGTTACCTATGT 58.944 40.000 0.00 0.00 0.00 2.29
43 44 6.054941 TGTGGCATCTATGTTGTTACCTATG 58.945 40.000 0.00 0.00 0.00 2.23
44 45 6.247229 TGTGGCATCTATGTTGTTACCTAT 57.753 37.500 0.00 0.00 0.00 2.57
45 46 5.685520 TGTGGCATCTATGTTGTTACCTA 57.314 39.130 0.00 0.00 0.00 3.08
46 47 4.568072 TGTGGCATCTATGTTGTTACCT 57.432 40.909 0.00 0.00 0.00 3.08
47 48 6.513393 GCTTATGTGGCATCTATGTTGTTACC 60.513 42.308 0.00 0.00 0.00 2.85
48 49 6.038161 TGCTTATGTGGCATCTATGTTGTTAC 59.962 38.462 0.00 0.00 34.56 2.50
49 50 6.118852 TGCTTATGTGGCATCTATGTTGTTA 58.881 36.000 0.00 0.00 34.56 2.41
50 51 4.949238 TGCTTATGTGGCATCTATGTTGTT 59.051 37.500 0.00 0.00 34.56 2.83
51 52 4.525996 TGCTTATGTGGCATCTATGTTGT 58.474 39.130 0.00 0.00 34.56 3.32
52 53 5.503662 TTGCTTATGTGGCATCTATGTTG 57.496 39.130 0.00 0.00 39.54 3.33
53 54 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
54 55 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
55 56 9.701098 AATATTTTTGCTTATGTGGCATCTATG 57.299 29.630 0.00 0.00 39.54 2.23
56 57 9.701098 CAATATTTTTGCTTATGTGGCATCTAT 57.299 29.630 0.00 0.00 39.54 1.98
57 58 8.911965 TCAATATTTTTGCTTATGTGGCATCTA 58.088 29.630 0.00 0.00 39.54 1.98
58 59 7.784037 TCAATATTTTTGCTTATGTGGCATCT 58.216 30.769 0.00 0.00 39.54 2.90
59 60 8.492748 CATCAATATTTTTGCTTATGTGGCATC 58.507 33.333 0.00 0.00 39.54 3.91
60 61 7.988599 ACATCAATATTTTTGCTTATGTGGCAT 59.011 29.630 0.00 0.00 39.54 4.40
61 62 7.278203 CACATCAATATTTTTGCTTATGTGGCA 59.722 33.333 0.00 0.00 39.34 4.92
62 63 7.623770 CACATCAATATTTTTGCTTATGTGGC 58.376 34.615 0.00 0.00 39.34 5.01
64 65 7.278203 TGCCACATCAATATTTTTGCTTATGTG 59.722 33.333 0.00 0.00 41.50 3.21
65 66 7.329499 TGCCACATCAATATTTTTGCTTATGT 58.671 30.769 0.00 0.00 0.00 2.29
66 67 7.773864 TGCCACATCAATATTTTTGCTTATG 57.226 32.000 0.00 0.00 0.00 1.90
67 68 8.042515 ACTTGCCACATCAATATTTTTGCTTAT 58.957 29.630 0.00 0.00 0.00 1.73
68 69 7.385267 ACTTGCCACATCAATATTTTTGCTTA 58.615 30.769 0.00 0.00 0.00 3.09
69 70 6.232692 ACTTGCCACATCAATATTTTTGCTT 58.767 32.000 0.00 0.00 0.00 3.91
70 71 5.797051 ACTTGCCACATCAATATTTTTGCT 58.203 33.333 0.00 0.00 0.00 3.91
71 72 6.813152 ACTACTTGCCACATCAATATTTTTGC 59.187 34.615 0.00 0.00 0.00 3.68
72 73 8.761575 AACTACTTGCCACATCAATATTTTTG 57.238 30.769 0.00 0.00 0.00 2.44
76 77 9.407380 TCATTAACTACTTGCCACATCAATATT 57.593 29.630 0.00 0.00 0.00 1.28
77 78 8.978874 TCATTAACTACTTGCCACATCAATAT 57.021 30.769 0.00 0.00 0.00 1.28
78 79 7.498900 CCTCATTAACTACTTGCCACATCAATA 59.501 37.037 0.00 0.00 0.00 1.90
79 80 6.319658 CCTCATTAACTACTTGCCACATCAAT 59.680 38.462 0.00 0.00 0.00 2.57
80 81 5.647658 CCTCATTAACTACTTGCCACATCAA 59.352 40.000 0.00 0.00 0.00 2.57
81 82 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
82 83 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
83 84 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
84 85 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
85 86 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
86 87 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
87 88 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
88 89 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
89 90 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
90 91 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
91 92 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
92 93 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
93 94 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
94 95 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
95 96 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
96 97 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
97 98 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
98 99 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
99 100 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
100 101 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
101 102 5.221362 GGTTACTCTATTTGCCTCTCTCCTC 60.221 48.000 0.00 0.00 0.00 3.71
102 103 4.651962 GGTTACTCTATTTGCCTCTCTCCT 59.348 45.833 0.00 0.00 0.00 3.69
103 104 4.651962 AGGTTACTCTATTTGCCTCTCTCC 59.348 45.833 0.00 0.00 0.00 3.71
104 105 5.862678 AGGTTACTCTATTTGCCTCTCTC 57.137 43.478 0.00 0.00 0.00 3.20
105 106 7.922699 ATTAGGTTACTCTATTTGCCTCTCT 57.077 36.000 0.00 0.00 0.00 3.10
106 107 9.646427 CATATTAGGTTACTCTATTTGCCTCTC 57.354 37.037 0.00 0.00 0.00 3.20
107 108 9.160412 ACATATTAGGTTACTCTATTTGCCTCT 57.840 33.333 0.00 0.00 0.00 3.69
108 109 9.780186 AACATATTAGGTTACTCTATTTGCCTC 57.220 33.333 0.00 0.00 0.00 4.70
132 133 4.941263 TGGAAAGTGCTATGTGATGGTAAC 59.059 41.667 0.00 0.00 0.00 2.50
133 134 5.172687 TGGAAAGTGCTATGTGATGGTAA 57.827 39.130 0.00 0.00 0.00 2.85
134 135 4.835284 TGGAAAGTGCTATGTGATGGTA 57.165 40.909 0.00 0.00 0.00 3.25
135 136 3.719268 TGGAAAGTGCTATGTGATGGT 57.281 42.857 0.00 0.00 0.00 3.55
136 137 4.735578 GCATTGGAAAGTGCTATGTGATGG 60.736 45.833 0.00 0.00 38.30 3.51
137 138 4.142337 TGCATTGGAAAGTGCTATGTGATG 60.142 41.667 0.00 0.00 41.78 3.07
138 139 4.018490 TGCATTGGAAAGTGCTATGTGAT 58.982 39.130 0.00 0.00 41.78 3.06
139 140 3.419943 TGCATTGGAAAGTGCTATGTGA 58.580 40.909 0.00 0.00 41.78 3.58
140 141 3.853831 TGCATTGGAAAGTGCTATGTG 57.146 42.857 0.00 0.00 41.78 3.21
141 142 4.870123 TTTGCATTGGAAAGTGCTATGT 57.130 36.364 0.00 0.00 41.78 2.29
142 143 5.870433 TCATTTTGCATTGGAAAGTGCTATG 59.130 36.000 17.49 11.67 41.78 2.23
143 144 6.040209 TCATTTTGCATTGGAAAGTGCTAT 57.960 33.333 17.49 1.22 41.78 2.97
144 145 5.010922 ACTCATTTTGCATTGGAAAGTGCTA 59.989 36.000 17.49 4.88 41.78 3.49
145 146 4.202284 ACTCATTTTGCATTGGAAAGTGCT 60.202 37.500 17.49 6.02 41.78 4.40
146 147 4.060205 ACTCATTTTGCATTGGAAAGTGC 58.940 39.130 17.49 0.00 41.61 4.40
147 148 5.535333 AGACTCATTTTGCATTGGAAAGTG 58.465 37.500 16.57 16.57 0.00 3.16
148 149 5.796424 AGACTCATTTTGCATTGGAAAGT 57.204 34.783 3.51 0.00 0.00 2.66
149 150 6.680810 TGTAGACTCATTTTGCATTGGAAAG 58.319 36.000 3.51 0.00 0.00 2.62
150 151 6.647334 TGTAGACTCATTTTGCATTGGAAA 57.353 33.333 0.00 0.00 0.00 3.13
151 152 6.489700 TCTTGTAGACTCATTTTGCATTGGAA 59.510 34.615 0.00 0.00 0.00 3.53
152 153 6.003326 TCTTGTAGACTCATTTTGCATTGGA 58.997 36.000 0.00 0.00 0.00 3.53
153 154 6.258230 TCTTGTAGACTCATTTTGCATTGG 57.742 37.500 0.00 0.00 0.00 3.16
192 193 9.797556 GAAGTGTCATATGTGTAGTAACATACA 57.202 33.333 1.90 0.00 43.83 2.29
196 197 9.850628 GTAAGAAGTGTCATATGTGTAGTAACA 57.149 33.333 1.90 0.00 0.00 2.41
204 205 9.698309 CCCTTATAGTAAGAAGTGTCATATGTG 57.302 37.037 1.90 0.00 0.00 3.21
205 206 9.435570 ACCCTTATAGTAAGAAGTGTCATATGT 57.564 33.333 1.90 0.00 0.00 2.29
210 211 9.979897 TTACTACCCTTATAGTAAGAAGTGTCA 57.020 33.333 2.07 0.00 40.90 3.58
288 289 9.051679 TGCGTGAAAATAAGTAGTAATATGCAT 57.948 29.630 3.79 3.79 0.00 3.96
289 290 8.426881 TGCGTGAAAATAAGTAGTAATATGCA 57.573 30.769 0.00 0.00 0.00 3.96
290 291 7.530861 GCTGCGTGAAAATAAGTAGTAATATGC 59.469 37.037 0.00 0.00 0.00 3.14
291 292 8.009974 GGCTGCGTGAAAATAAGTAGTAATATG 58.990 37.037 0.00 0.00 0.00 1.78
292 293 7.172703 GGGCTGCGTGAAAATAAGTAGTAATAT 59.827 37.037 0.00 0.00 0.00 1.28
293 294 6.480981 GGGCTGCGTGAAAATAAGTAGTAATA 59.519 38.462 0.00 0.00 0.00 0.98
294 295 5.296035 GGGCTGCGTGAAAATAAGTAGTAAT 59.704 40.000 0.00 0.00 0.00 1.89
295 296 4.632688 GGGCTGCGTGAAAATAAGTAGTAA 59.367 41.667 0.00 0.00 0.00 2.24
296 297 4.186159 GGGCTGCGTGAAAATAAGTAGTA 58.814 43.478 0.00 0.00 0.00 1.82
297 298 3.007635 GGGCTGCGTGAAAATAAGTAGT 58.992 45.455 0.00 0.00 0.00 2.73
298 299 3.006940 TGGGCTGCGTGAAAATAAGTAG 58.993 45.455 0.00 0.00 0.00 2.57
299 300 3.060736 TGGGCTGCGTGAAAATAAGTA 57.939 42.857 0.00 0.00 0.00 2.24
300 301 1.904287 TGGGCTGCGTGAAAATAAGT 58.096 45.000 0.00 0.00 0.00 2.24
301 302 2.684881 AGATGGGCTGCGTGAAAATAAG 59.315 45.455 0.00 0.00 0.00 1.73
302 303 2.722094 AGATGGGCTGCGTGAAAATAA 58.278 42.857 0.00 0.00 0.00 1.40
303 304 2.418368 AGATGGGCTGCGTGAAAATA 57.582 45.000 0.00 0.00 0.00 1.40
304 305 1.549203 AAGATGGGCTGCGTGAAAAT 58.451 45.000 0.00 0.00 0.00 1.82
305 306 2.192664 TAAGATGGGCTGCGTGAAAA 57.807 45.000 0.00 0.00 0.00 2.29
306 307 2.083774 CTTAAGATGGGCTGCGTGAAA 58.916 47.619 0.00 0.00 0.00 2.69
307 308 1.737838 CTTAAGATGGGCTGCGTGAA 58.262 50.000 0.00 0.00 0.00 3.18
308 309 0.744414 GCTTAAGATGGGCTGCGTGA 60.744 55.000 6.67 0.00 0.00 4.35
309 310 1.718757 GGCTTAAGATGGGCTGCGTG 61.719 60.000 6.67 0.00 0.00 5.34
310 311 1.452108 GGCTTAAGATGGGCTGCGT 60.452 57.895 6.67 0.00 0.00 5.24
311 312 0.820891 ATGGCTTAAGATGGGCTGCG 60.821 55.000 6.67 0.00 0.00 5.18
312 313 0.957362 GATGGCTTAAGATGGGCTGC 59.043 55.000 6.67 0.00 0.00 5.25
313 314 2.353357 TGATGGCTTAAGATGGGCTG 57.647 50.000 6.67 0.00 0.00 4.85
314 315 4.729552 TTATGATGGCTTAAGATGGGCT 57.270 40.909 6.67 0.00 0.00 5.19
315 316 5.990120 AATTATGATGGCTTAAGATGGGC 57.010 39.130 6.67 0.00 0.00 5.36
316 317 8.031277 GCTTAAATTATGATGGCTTAAGATGGG 58.969 37.037 6.67 0.00 33.37 4.00
317 318 8.800332 AGCTTAAATTATGATGGCTTAAGATGG 58.200 33.333 6.67 0.00 33.37 3.51
318 319 9.622004 CAGCTTAAATTATGATGGCTTAAGATG 57.378 33.333 6.67 4.38 38.71 2.90
319 320 9.578576 TCAGCTTAAATTATGATGGCTTAAGAT 57.421 29.630 6.67 0.00 33.37 2.40
320 321 8.978874 TCAGCTTAAATTATGATGGCTTAAGA 57.021 30.769 6.67 0.00 33.37 2.10
321 322 9.837525 GATCAGCTTAAATTATGATGGCTTAAG 57.162 33.333 0.00 0.00 32.68 1.85
322 323 9.353431 TGATCAGCTTAAATTATGATGGCTTAA 57.647 29.630 4.68 0.00 32.68 1.85
323 324 8.922931 TGATCAGCTTAAATTATGATGGCTTA 57.077 30.769 4.68 0.00 32.68 3.09
324 325 7.828508 TGATCAGCTTAAATTATGATGGCTT 57.171 32.000 4.68 0.00 32.68 4.35
325 326 7.828508 TTGATCAGCTTAAATTATGATGGCT 57.171 32.000 0.00 0.00 32.68 4.75
326 327 8.758715 GTTTTGATCAGCTTAAATTATGATGGC 58.241 33.333 0.00 0.00 32.68 4.40
327 328 9.806203 TGTTTTGATCAGCTTAAATTATGATGG 57.194 29.630 0.00 0.00 32.68 3.51
340 341 9.860898 GGACTAATTTAATTGTTTTGATCAGCT 57.139 29.630 0.00 0.00 0.00 4.24
341 342 9.860898 AGGACTAATTTAATTGTTTTGATCAGC 57.139 29.630 0.00 0.00 0.00 4.26
343 344 9.638239 GCAGGACTAATTTAATTGTTTTGATCA 57.362 29.630 0.00 0.00 0.00 2.92
344 345 9.860898 AGCAGGACTAATTTAATTGTTTTGATC 57.139 29.630 0.00 0.00 0.00 2.92
351 352 9.515226 TCACTAAAGCAGGACTAATTTAATTGT 57.485 29.630 0.00 0.00 0.00 2.71
352 353 9.994432 CTCACTAAAGCAGGACTAATTTAATTG 57.006 33.333 0.00 0.00 0.00 2.32
353 354 8.678199 GCTCACTAAAGCAGGACTAATTTAATT 58.322 33.333 0.00 0.00 42.05 1.40
354 355 7.283354 GGCTCACTAAAGCAGGACTAATTTAAT 59.717 37.037 0.00 0.00 44.35 1.40
355 356 6.598064 GGCTCACTAAAGCAGGACTAATTTAA 59.402 38.462 0.00 0.00 44.35 1.52
356 357 6.113411 GGCTCACTAAAGCAGGACTAATTTA 58.887 40.000 0.00 0.00 44.35 1.40
357 358 4.944317 GGCTCACTAAAGCAGGACTAATTT 59.056 41.667 0.00 0.00 44.35 1.82
358 359 4.019321 TGGCTCACTAAAGCAGGACTAATT 60.019 41.667 0.00 0.00 44.35 1.40
359 360 3.519510 TGGCTCACTAAAGCAGGACTAAT 59.480 43.478 0.00 0.00 44.35 1.73
360 361 2.903784 TGGCTCACTAAAGCAGGACTAA 59.096 45.455 0.00 0.00 44.35 2.24
361 362 2.233922 GTGGCTCACTAAAGCAGGACTA 59.766 50.000 0.00 0.00 44.35 2.59
362 363 1.002544 GTGGCTCACTAAAGCAGGACT 59.997 52.381 0.00 0.00 44.35 3.85
363 364 1.270839 TGTGGCTCACTAAAGCAGGAC 60.271 52.381 6.83 0.00 44.35 3.85
364 365 1.055849 TGTGGCTCACTAAAGCAGGA 58.944 50.000 6.83 0.00 44.35 3.86
365 366 1.160137 GTGTGGCTCACTAAAGCAGG 58.840 55.000 12.19 0.00 44.35 4.85
366 367 1.160137 GGTGTGGCTCACTAAAGCAG 58.840 55.000 18.07 0.00 44.35 4.24
367 368 0.764890 AGGTGTGGCTCACTAAAGCA 59.235 50.000 18.07 0.00 44.35 3.91
368 369 1.002544 AGAGGTGTGGCTCACTAAAGC 59.997 52.381 18.07 2.68 45.50 3.51
369 370 4.744795 ATAGAGGTGTGGCTCACTAAAG 57.255 45.455 18.07 0.00 45.50 1.85
370 371 4.286032 ACAATAGAGGTGTGGCTCACTAAA 59.714 41.667 18.07 3.90 45.50 1.85
371 372 3.838317 ACAATAGAGGTGTGGCTCACTAA 59.162 43.478 18.07 3.59 45.50 2.24
372 373 3.441101 ACAATAGAGGTGTGGCTCACTA 58.559 45.455 18.07 4.87 45.50 2.74
373 374 2.260822 ACAATAGAGGTGTGGCTCACT 58.739 47.619 18.07 5.65 45.50 3.41
374 375 2.770164 ACAATAGAGGTGTGGCTCAC 57.230 50.000 11.10 11.10 45.47 3.51
375 376 4.901197 TTTACAATAGAGGTGTGGCTCA 57.099 40.909 0.00 0.00 0.00 4.26
376 377 5.246307 ACTTTTACAATAGAGGTGTGGCTC 58.754 41.667 0.00 0.00 0.00 4.70
377 378 5.242795 ACTTTTACAATAGAGGTGTGGCT 57.757 39.130 0.00 0.00 0.00 4.75
378 379 5.959618 AACTTTTACAATAGAGGTGTGGC 57.040 39.130 0.00 0.00 0.00 5.01
379 380 8.021396 GCTTAAACTTTTACAATAGAGGTGTGG 58.979 37.037 0.00 0.00 0.00 4.17
380 381 8.784043 AGCTTAAACTTTTACAATAGAGGTGTG 58.216 33.333 0.00 0.00 0.00 3.82
381 382 8.919777 AGCTTAAACTTTTACAATAGAGGTGT 57.080 30.769 0.00 0.00 0.00 4.16
413 414 9.669024 ACCCCAACCAAAGCTAATATAATTATT 57.331 29.630 2.68 0.00 32.75 1.40
414 415 9.088987 CACCCCAACCAAAGCTAATATAATTAT 57.911 33.333 2.97 2.97 0.00 1.28
415 416 7.014808 GCACCCCAACCAAAGCTAATATAATTA 59.985 37.037 0.00 0.00 0.00 1.40
416 417 6.183360 GCACCCCAACCAAAGCTAATATAATT 60.183 38.462 0.00 0.00 0.00 1.40
417 418 5.304357 GCACCCCAACCAAAGCTAATATAAT 59.696 40.000 0.00 0.00 0.00 1.28
418 419 4.647399 GCACCCCAACCAAAGCTAATATAA 59.353 41.667 0.00 0.00 0.00 0.98
419 420 4.211920 GCACCCCAACCAAAGCTAATATA 58.788 43.478 0.00 0.00 0.00 0.86
420 421 3.031013 GCACCCCAACCAAAGCTAATAT 58.969 45.455 0.00 0.00 0.00 1.28
421 422 2.225142 TGCACCCCAACCAAAGCTAATA 60.225 45.455 0.00 0.00 0.00 0.98
422 423 1.266178 GCACCCCAACCAAAGCTAAT 58.734 50.000 0.00 0.00 0.00 1.73
423 424 0.105964 TGCACCCCAACCAAAGCTAA 60.106 50.000 0.00 0.00 0.00 3.09
424 425 0.825840 GTGCACCCCAACCAAAGCTA 60.826 55.000 5.22 0.00 0.00 3.32
425 426 2.133641 GTGCACCCCAACCAAAGCT 61.134 57.895 5.22 0.00 0.00 3.74
426 427 1.965754 TTGTGCACCCCAACCAAAGC 61.966 55.000 15.69 0.00 0.00 3.51
427 428 0.179086 GTTGTGCACCCCAACCAAAG 60.179 55.000 15.69 0.00 36.94 2.77
428 429 0.904865 TGTTGTGCACCCCAACCAAA 60.905 50.000 15.69 0.00 41.13 3.28
429 430 1.305297 TGTTGTGCACCCCAACCAA 60.305 52.632 15.69 0.00 41.13 3.67
430 431 2.055042 GTGTTGTGCACCCCAACCA 61.055 57.895 15.69 1.11 41.13 3.67
431 432 2.811799 GTGTTGTGCACCCCAACC 59.188 61.111 15.69 3.29 41.13 3.77
438 439 1.102978 ACTTTCCAGGTGTTGTGCAC 58.897 50.000 10.75 10.75 46.97 4.57
439 440 1.846007 AACTTTCCAGGTGTTGTGCA 58.154 45.000 0.00 0.00 0.00 4.57
440 441 2.959507 AAACTTTCCAGGTGTTGTGC 57.040 45.000 0.00 0.00 0.00 4.57
441 442 4.142271 TGCTTAAACTTTCCAGGTGTTGTG 60.142 41.667 0.00 0.00 0.00 3.33
442 443 4.020543 TGCTTAAACTTTCCAGGTGTTGT 58.979 39.130 0.00 0.00 0.00 3.32
443 444 4.647424 TGCTTAAACTTTCCAGGTGTTG 57.353 40.909 0.00 0.00 0.00 3.33
444 445 6.152831 GGATATGCTTAAACTTTCCAGGTGTT 59.847 38.462 0.00 0.00 0.00 3.32
445 446 5.652452 GGATATGCTTAAACTTTCCAGGTGT 59.348 40.000 0.00 0.00 0.00 4.16
446 447 5.652014 TGGATATGCTTAAACTTTCCAGGTG 59.348 40.000 0.00 0.00 0.00 4.00
447 448 5.826643 TGGATATGCTTAAACTTTCCAGGT 58.173 37.500 0.00 0.00 0.00 4.00
448 449 6.122277 TCTGGATATGCTTAAACTTTCCAGG 58.878 40.000 18.83 7.37 45.62 4.45
449 450 7.630242 TTCTGGATATGCTTAAACTTTCCAG 57.370 36.000 15.33 15.33 46.50 3.86
450 451 8.303876 GTTTTCTGGATATGCTTAAACTTTCCA 58.696 33.333 0.00 0.00 0.00 3.53
451 452 8.303876 TGTTTTCTGGATATGCTTAAACTTTCC 58.696 33.333 14.93 0.00 0.00 3.13
452 453 9.129209 GTGTTTTCTGGATATGCTTAAACTTTC 57.871 33.333 14.93 7.11 0.00 2.62
453 454 7.807907 CGTGTTTTCTGGATATGCTTAAACTTT 59.192 33.333 14.93 0.00 0.00 2.66
454 455 7.040686 ACGTGTTTTCTGGATATGCTTAAACTT 60.041 33.333 14.93 3.89 0.00 2.66
455 456 6.430000 ACGTGTTTTCTGGATATGCTTAAACT 59.570 34.615 14.93 0.82 0.00 2.66
456 457 6.608610 ACGTGTTTTCTGGATATGCTTAAAC 58.391 36.000 0.00 4.54 0.00 2.01
457 458 6.811253 ACGTGTTTTCTGGATATGCTTAAA 57.189 33.333 0.00 0.00 0.00 1.52
458 459 6.128117 GGAACGTGTTTTCTGGATATGCTTAA 60.128 38.462 0.00 0.00 0.00 1.85
459 460 5.353123 GGAACGTGTTTTCTGGATATGCTTA 59.647 40.000 0.00 0.00 0.00 3.09
460 461 4.156008 GGAACGTGTTTTCTGGATATGCTT 59.844 41.667 0.00 0.00 0.00 3.91
461 462 3.689649 GGAACGTGTTTTCTGGATATGCT 59.310 43.478 0.00 0.00 0.00 3.79
462 463 3.438781 TGGAACGTGTTTTCTGGATATGC 59.561 43.478 0.00 0.00 0.00 3.14
463 464 5.220854 GGATGGAACGTGTTTTCTGGATATG 60.221 44.000 0.00 0.00 0.00 1.78
464 465 4.881850 GGATGGAACGTGTTTTCTGGATAT 59.118 41.667 0.00 0.00 0.00 1.63
465 466 4.019681 AGGATGGAACGTGTTTTCTGGATA 60.020 41.667 0.00 0.00 0.00 2.59
466 467 3.081804 GGATGGAACGTGTTTTCTGGAT 58.918 45.455 0.00 0.00 0.00 3.41
467 468 2.105821 AGGATGGAACGTGTTTTCTGGA 59.894 45.455 0.00 0.00 0.00 3.86
468 469 2.484264 GAGGATGGAACGTGTTTTCTGG 59.516 50.000 0.00 0.00 0.00 3.86
469 470 2.484264 GGAGGATGGAACGTGTTTTCTG 59.516 50.000 0.00 0.00 0.00 3.02
470 471 2.105821 TGGAGGATGGAACGTGTTTTCT 59.894 45.455 0.00 0.00 0.00 2.52
471 472 2.500229 TGGAGGATGGAACGTGTTTTC 58.500 47.619 0.00 0.00 0.00 2.29
472 473 2.649531 TGGAGGATGGAACGTGTTTT 57.350 45.000 0.00 0.00 0.00 2.43
473 474 2.879103 ATGGAGGATGGAACGTGTTT 57.121 45.000 0.00 0.00 0.00 2.83
474 475 2.879103 AATGGAGGATGGAACGTGTT 57.121 45.000 0.00 0.00 0.00 3.32
475 476 2.569853 TGTAATGGAGGATGGAACGTGT 59.430 45.455 0.00 0.00 0.00 4.49
476 477 3.260475 TGTAATGGAGGATGGAACGTG 57.740 47.619 0.00 0.00 0.00 4.49
477 478 3.992943 TTGTAATGGAGGATGGAACGT 57.007 42.857 0.00 0.00 0.00 3.99
478 479 5.835113 AATTTGTAATGGAGGATGGAACG 57.165 39.130 0.00 0.00 0.00 3.95
479 480 9.533253 CAATTAATTTGTAATGGAGGATGGAAC 57.467 33.333 0.00 0.00 0.00 3.62
480 481 9.486123 TCAATTAATTTGTAATGGAGGATGGAA 57.514 29.630 0.00 0.00 36.65 3.53
481 482 8.912988 GTCAATTAATTTGTAATGGAGGATGGA 58.087 33.333 0.00 0.00 36.65 3.41
482 483 8.143835 GGTCAATTAATTTGTAATGGAGGATGG 58.856 37.037 0.00 0.00 36.65 3.51
483 484 8.917088 AGGTCAATTAATTTGTAATGGAGGATG 58.083 33.333 0.00 0.00 36.65 3.51
484 485 9.136323 GAGGTCAATTAATTTGTAATGGAGGAT 57.864 33.333 0.00 0.00 36.65 3.24
485 486 7.559897 GGAGGTCAATTAATTTGTAATGGAGGA 59.440 37.037 0.00 0.00 36.65 3.71
486 487 7.341769 TGGAGGTCAATTAATTTGTAATGGAGG 59.658 37.037 0.00 0.00 36.65 4.30
487 488 8.292444 TGGAGGTCAATTAATTTGTAATGGAG 57.708 34.615 0.00 0.00 36.65 3.86
488 489 8.837099 ATGGAGGTCAATTAATTTGTAATGGA 57.163 30.769 0.00 0.00 36.65 3.41
489 490 9.889128 AAATGGAGGTCAATTAATTTGTAATGG 57.111 29.630 0.00 0.00 36.65 3.16
515 516 9.458727 CGGAGGGAGTATATTTGTATCTAGTTA 57.541 37.037 0.00 0.00 0.00 2.24
516 517 7.949006 ACGGAGGGAGTATATTTGTATCTAGTT 59.051 37.037 0.00 0.00 0.00 2.24
517 518 7.468496 ACGGAGGGAGTATATTTGTATCTAGT 58.532 38.462 0.00 0.00 0.00 2.57
518 519 7.067251 GGACGGAGGGAGTATATTTGTATCTAG 59.933 44.444 0.00 0.00 0.00 2.43
519 520 6.888632 GGACGGAGGGAGTATATTTGTATCTA 59.111 42.308 0.00 0.00 0.00 1.98
520 521 5.715753 GGACGGAGGGAGTATATTTGTATCT 59.284 44.000 0.00 0.00 0.00 1.98
521 522 5.392811 CGGACGGAGGGAGTATATTTGTATC 60.393 48.000 0.00 0.00 0.00 2.24
522 523 4.461781 CGGACGGAGGGAGTATATTTGTAT 59.538 45.833 0.00 0.00 0.00 2.29
523 524 3.822735 CGGACGGAGGGAGTATATTTGTA 59.177 47.826 0.00 0.00 0.00 2.41
524 525 2.626743 CGGACGGAGGGAGTATATTTGT 59.373 50.000 0.00 0.00 0.00 2.83
525 526 2.029290 CCGGACGGAGGGAGTATATTTG 60.029 54.545 4.40 0.00 37.50 2.32
526 527 2.158415 TCCGGACGGAGGGAGTATATTT 60.158 50.000 9.76 0.00 39.76 1.40
527 528 1.426598 TCCGGACGGAGGGAGTATATT 59.573 52.381 9.76 0.00 39.76 1.28
528 529 1.070604 TCCGGACGGAGGGAGTATAT 58.929 55.000 9.76 0.00 39.76 0.86
529 530 0.846015 TTCCGGACGGAGGGAGTATA 59.154 55.000 13.64 0.00 46.06 1.47
530 531 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
531 532 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
532 533 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
533 534 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
534 535 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
535 536 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
536 537 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
537 538 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
538 539 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
539 540 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
540 541 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
541 542 5.411669 AGTTTGATGACAAGTATTTCCGGAC 59.588 40.000 1.83 0.00 37.32 4.79
542 543 5.556915 AGTTTGATGACAAGTATTTCCGGA 58.443 37.500 0.00 0.00 37.32 5.14
543 544 5.880054 AGTTTGATGACAAGTATTTCCGG 57.120 39.130 0.00 0.00 37.32 5.14
544 545 7.827819 TCTAGTTTGATGACAAGTATTTCCG 57.172 36.000 0.00 0.00 37.32 4.30
550 551 9.667107 CCCTTTTATCTAGTTTGATGACAAGTA 57.333 33.333 0.00 0.00 37.32 2.24
551 552 7.611855 CCCCTTTTATCTAGTTTGATGACAAGT 59.388 37.037 0.00 0.00 37.32 3.16
552 553 7.829211 TCCCCTTTTATCTAGTTTGATGACAAG 59.171 37.037 0.00 0.00 37.32 3.16
553 554 7.695055 TCCCCTTTTATCTAGTTTGATGACAA 58.305 34.615 0.00 0.00 0.00 3.18
554 555 7.265599 TCCCCTTTTATCTAGTTTGATGACA 57.734 36.000 0.00 0.00 0.00 3.58
555 556 7.775561 ACATCCCCTTTTATCTAGTTTGATGAC 59.224 37.037 0.00 0.00 32.39 3.06
556 557 7.872138 ACATCCCCTTTTATCTAGTTTGATGA 58.128 34.615 0.00 0.00 32.39 2.92
557 558 9.799106 ATACATCCCCTTTTATCTAGTTTGATG 57.201 33.333 0.00 0.00 33.80 3.07
558 559 9.799106 CATACATCCCCTTTTATCTAGTTTGAT 57.201 33.333 0.00 0.00 0.00 2.57
559 560 8.778059 ACATACATCCCCTTTTATCTAGTTTGA 58.222 33.333 0.00 0.00 0.00 2.69
560 561 8.980481 ACATACATCCCCTTTTATCTAGTTTG 57.020 34.615 0.00 0.00 0.00 2.93
562 563 9.670442 TCTACATACATCCCCTTTTATCTAGTT 57.330 33.333 0.00 0.00 0.00 2.24
563 564 9.845214 ATCTACATACATCCCCTTTTATCTAGT 57.155 33.333 0.00 0.00 0.00 2.57
565 566 9.615660 ACATCTACATACATCCCCTTTTATCTA 57.384 33.333 0.00 0.00 0.00 1.98
566 567 8.511748 ACATCTACATACATCCCCTTTTATCT 57.488 34.615 0.00 0.00 0.00 1.98
570 571 9.936329 AAAATACATCTACATACATCCCCTTTT 57.064 29.630 0.00 0.00 0.00 2.27
573 574 9.393786 ACTAAAATACATCTACATACATCCCCT 57.606 33.333 0.00 0.00 0.00 4.79
611 612 9.918630 ACTTGTCATGAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 0.00 2.85
619 620 7.975616 CCGAAAATACTTGTCATGAAAATGGAT 59.024 33.333 0.00 0.00 0.00 3.41
620 621 7.175816 TCCGAAAATACTTGTCATGAAAATGGA 59.824 33.333 0.00 0.00 0.00 3.41
621 622 7.273381 GTCCGAAAATACTTGTCATGAAAATGG 59.727 37.037 0.00 0.00 0.00 3.16
622 623 7.007367 CGTCCGAAAATACTTGTCATGAAAATG 59.993 37.037 0.00 0.00 0.00 2.32
623 624 7.021196 CGTCCGAAAATACTTGTCATGAAAAT 58.979 34.615 0.00 0.00 0.00 1.82
624 625 6.367421 CGTCCGAAAATACTTGTCATGAAAA 58.633 36.000 0.00 0.00 0.00 2.29
625 626 5.106869 CCGTCCGAAAATACTTGTCATGAAA 60.107 40.000 0.00 0.00 0.00 2.69
626 627 4.390603 CCGTCCGAAAATACTTGTCATGAA 59.609 41.667 0.00 0.00 0.00 2.57
627 628 3.930229 CCGTCCGAAAATACTTGTCATGA 59.070 43.478 0.00 0.00 0.00 3.07
628 629 3.930229 TCCGTCCGAAAATACTTGTCATG 59.070 43.478 0.00 0.00 0.00 3.07
629 630 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
630 631 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
631 632 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
632 633 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
633 634 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
634 635 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
635 636 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
636 637 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
637 638 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
638 639 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
639 640 1.631405 TTACTCCCTCCGTCCGAAAA 58.369 50.000 0.00 0.00 0.00 2.29
640 641 1.856629 ATTACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
641 642 2.173356 TCTATTACTCCCTCCGTCCGAA 59.827 50.000 0.00 0.00 0.00 4.30
642 643 1.770658 TCTATTACTCCCTCCGTCCGA 59.229 52.381 0.00 0.00 0.00 4.55
643 644 2.267174 TCTATTACTCCCTCCGTCCG 57.733 55.000 0.00 0.00 0.00 4.79
644 645 6.421485 TGTATATCTATTACTCCCTCCGTCC 58.579 44.000 0.00 0.00 0.00 4.79
645 646 9.796180 ATATGTATATCTATTACTCCCTCCGTC 57.204 37.037 0.00 0.00 0.00 4.79
668 669 9.507329 CCCATTTCACTAGCTACAAATGTATAT 57.493 33.333 18.30 0.00 35.37 0.86
669 670 8.710239 TCCCATTTCACTAGCTACAAATGTATA 58.290 33.333 18.30 7.81 35.37 1.47
670 671 7.573710 TCCCATTTCACTAGCTACAAATGTAT 58.426 34.615 18.30 3.00 35.37 2.29
671 672 6.953101 TCCCATTTCACTAGCTACAAATGTA 58.047 36.000 18.30 9.57 35.37 2.29
672 673 5.815581 TCCCATTTCACTAGCTACAAATGT 58.184 37.500 18.30 3.08 35.37 2.71
673 674 6.757897 TTCCCATTTCACTAGCTACAAATG 57.242 37.500 15.32 15.32 36.42 2.32
674 675 7.118723 TGATTCCCATTTCACTAGCTACAAAT 58.881 34.615 0.00 0.00 0.00 2.32
675 676 6.480763 TGATTCCCATTTCACTAGCTACAAA 58.519 36.000 0.00 0.00 0.00 2.83
676 677 6.061022 TGATTCCCATTTCACTAGCTACAA 57.939 37.500 0.00 0.00 0.00 2.41
677 678 5.692115 TGATTCCCATTTCACTAGCTACA 57.308 39.130 0.00 0.00 0.00 2.74
678 679 6.767902 TGATTGATTCCCATTTCACTAGCTAC 59.232 38.462 0.00 0.00 0.00 3.58
679 680 6.899089 TGATTGATTCCCATTTCACTAGCTA 58.101 36.000 0.00 0.00 0.00 3.32
680 681 5.759059 TGATTGATTCCCATTTCACTAGCT 58.241 37.500 0.00 0.00 0.00 3.32
681 682 6.455360 TTGATTGATTCCCATTTCACTAGC 57.545 37.500 0.00 0.00 0.00 3.42
682 683 9.309516 CAAATTGATTGATTCCCATTTCACTAG 57.690 33.333 0.00 0.00 41.85 2.57
683 684 8.259411 CCAAATTGATTGATTCCCATTTCACTA 58.741 33.333 0.00 0.00 41.85 2.74
684 685 7.038160 TCCAAATTGATTGATTCCCATTTCACT 60.038 33.333 0.00 0.00 41.85 3.41
685 686 7.104939 TCCAAATTGATTGATTCCCATTTCAC 58.895 34.615 0.00 0.00 41.85 3.18
686 687 7.255199 TCCAAATTGATTGATTCCCATTTCA 57.745 32.000 0.00 0.00 41.85 2.69
687 688 8.741603 ATTCCAAATTGATTGATTCCCATTTC 57.258 30.769 0.00 0.00 41.85 2.17
694 695 9.538508 CTCCCTTAATTCCAAATTGATTGATTC 57.461 33.333 0.00 0.00 41.85 2.52
696 697 8.613922 ACTCCCTTAATTCCAAATTGATTGAT 57.386 30.769 0.00 0.00 41.85 2.57
701 702 6.713276 TCGTACTCCCTTAATTCCAAATTGA 58.287 36.000 0.00 0.00 0.00 2.57
712 713 4.142315 CCGTTCTGATTCGTACTCCCTTAA 60.142 45.833 0.00 0.00 0.00 1.85
713 714 3.379372 CCGTTCTGATTCGTACTCCCTTA 59.621 47.826 0.00 0.00 0.00 2.69
718 719 1.801765 GCCCCGTTCTGATTCGTACTC 60.802 57.143 0.00 0.00 0.00 2.59
723 724 2.513897 GGGCCCCGTTCTGATTCG 60.514 66.667 12.23 0.00 0.00 3.34
749 750 4.560919 GCTAGGGTCAGACGGGTATAAATG 60.561 50.000 0.00 0.00 0.00 2.32
750 751 3.577415 GCTAGGGTCAGACGGGTATAAAT 59.423 47.826 0.00 0.00 0.00 1.40
787 795 4.443034 GGTTCGATTAGTCCCACATAGCTT 60.443 45.833 0.00 0.00 0.00 3.74
791 799 2.363038 CCGGTTCGATTAGTCCCACATA 59.637 50.000 0.00 0.00 0.00 2.29
857 865 1.899814 TCTTCTCGCTGGGCTTCTTTA 59.100 47.619 0.00 0.00 0.00 1.85
1081 1090 4.704833 GAGGCAGCTCCGCACCAA 62.705 66.667 0.00 0.00 40.77 3.67
1162 1171 1.806461 TTCTGCTGCTTCTCGTCGGT 61.806 55.000 0.00 0.00 0.00 4.69
1201 1210 1.095600 CGAGACAGGGACTTGATCGA 58.904 55.000 7.58 0.00 34.60 3.59
1285 1294 4.323792 CCAAGATCCACATCCAACAGTACT 60.324 45.833 0.00 0.00 0.00 2.73
1317 1326 3.314541 ACCTAGACAAGTAAACCGCTG 57.685 47.619 0.00 0.00 0.00 5.18
1328 1337 3.173151 TCCAGCAGATCAACCTAGACAA 58.827 45.455 0.00 0.00 0.00 3.18
1369 1383 2.289569 GCAGCCCAACCAAAAATCATCA 60.290 45.455 0.00 0.00 0.00 3.07
1371 1385 1.338011 CGCAGCCCAACCAAAAATCAT 60.338 47.619 0.00 0.00 0.00 2.45
1394 1408 1.683790 GGAACAGATTCACGCGACGG 61.684 60.000 15.93 1.17 36.46 4.79
1412 1426 1.464608 CACATTTCTACGCAGGTGTGG 59.535 52.381 8.13 0.00 34.78 4.17
1476 1490 5.010012 AGCACATTTCTACCAACAGGAAAAG 59.990 40.000 0.00 0.00 33.58 2.27
1477 1491 4.892934 AGCACATTTCTACCAACAGGAAAA 59.107 37.500 0.00 0.00 33.58 2.29
1478 1492 4.278170 CAGCACATTTCTACCAACAGGAAA 59.722 41.667 0.00 0.00 34.22 3.13
1479 1493 3.820467 CAGCACATTTCTACCAACAGGAA 59.180 43.478 0.00 0.00 0.00 3.36
1480 1494 3.181445 ACAGCACATTTCTACCAACAGGA 60.181 43.478 0.00 0.00 0.00 3.86
1518 1532 3.937814 TCATCCTTTTGCGTATGTCAGT 58.062 40.909 0.00 0.00 0.00 3.41
1524 1538 7.865706 ACTTTAAGATCATCCTTTTGCGTAT 57.134 32.000 0.00 0.00 0.00 3.06
1549 1563 9.672673 AAATCTTGTATATTACACTGACAGCTT 57.327 29.630 1.25 0.00 38.63 3.74
1575 1593 2.324330 CCGCCGCAGATGACACAAA 61.324 57.895 0.00 0.00 0.00 2.83
1635 1653 1.472662 GCTCCAGGCTATAGGGCGAA 61.473 60.000 1.04 0.00 45.89 4.70
1804 1823 2.170397 ACGATAAGCACCATCATGTCCA 59.830 45.455 0.00 0.00 0.00 4.02
1863 1883 3.243737 CCTGGTTTTAAAGGAACACAGGC 60.244 47.826 10.50 0.00 37.97 4.85
1864 1884 4.211920 TCCTGGTTTTAAAGGAACACAGG 58.788 43.478 14.05 14.05 39.68 4.00
1869 1889 6.710597 AGTTTCTCCTGGTTTTAAAGGAAC 57.289 37.500 0.00 0.00 42.03 3.62
1893 1913 2.107378 TCAAACAGAGCCACCAATACCA 59.893 45.455 0.00 0.00 0.00 3.25
1898 1918 2.727123 TCTTCAAACAGAGCCACCAA 57.273 45.000 0.00 0.00 0.00 3.67
1957 1977 8.517062 AAGCTTGCAGAGATTAATCAATAACT 57.483 30.769 17.56 5.93 30.81 2.24
1994 2014 2.097825 CCTTGCATCAGGGGAAAGAAG 58.902 52.381 0.00 0.00 0.00 2.85
2105 2127 2.522185 AGACTTGCACATGCCTTTGAT 58.478 42.857 0.49 0.00 41.18 2.57
2106 2128 1.985473 AGACTTGCACATGCCTTTGA 58.015 45.000 0.49 0.00 41.18 2.69
2139 2161 5.827797 CAGGTGCTAATTATTACCACACCAT 59.172 40.000 20.05 9.44 46.70 3.55
2162 2184 3.242936 GGCGCTGAAAAGTGAAAACTACA 60.243 43.478 7.64 0.00 0.00 2.74
2183 2205 4.965814 ACTATGAGGTACTGATGCATTGG 58.034 43.478 0.00 0.00 41.55 3.16
2241 2263 6.425210 TTTGCTACCAGCTCTGTATCATAT 57.575 37.500 0.00 0.00 42.97 1.78
2264 2286 3.615155 GCTGAATAAACTCCCTCTGCTT 58.385 45.455 0.00 0.00 32.04 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.