Multiple sequence alignment - TraesCS3B01G325200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G325200 chr3B 100.000 2573 0 0 1 2573 526125708 526123136 0.000000e+00 4752.0
1 TraesCS3B01G325200 chr3B 95.378 238 11 0 129 366 526151503 526151266 1.870000e-101 379.0
2 TraesCS3B01G325200 chr3A 88.761 2171 159 40 438 2568 519275129 519273004 0.000000e+00 2579.0
3 TraesCS3B01G325200 chr3D 96.118 850 27 4 883 1731 400339804 400338960 0.000000e+00 1382.0
4 TraesCS3B01G325200 chr3D 86.720 753 64 10 1722 2440 400338914 400338164 0.000000e+00 804.0
5 TraesCS3B01G325200 chr3D 81.053 475 63 15 438 895 400340280 400339816 1.130000e-93 353.0
6 TraesCS3B01G325200 chr3D 90.455 220 17 4 129 348 112738489 112738704 1.170000e-73 287.0
7 TraesCS3B01G325200 chr3D 90.909 209 17 2 129 337 112734007 112734213 1.950000e-71 279.0
8 TraesCS3B01G325200 chr3D 75.000 292 54 17 449 726 587448707 587448993 1.620000e-22 117.0
9 TraesCS3B01G325200 chr2D 90.909 209 17 2 129 337 127039161 127038955 1.950000e-71 279.0
10 TraesCS3B01G325200 chr2D 87.552 241 24 6 129 367 127046975 127046739 9.070000e-70 274.0
11 TraesCS3B01G325200 chr7D 90.686 204 17 2 129 332 529576443 529576242 1.170000e-68 270.0
12 TraesCS3B01G325200 chr6D 87.983 233 22 6 192 424 401586400 401586174 1.170000e-68 270.0
13 TraesCS3B01G325200 chr6D 97.436 39 1 0 1695 1733 60610193 60610231 1.650000e-07 67.6
14 TraesCS3B01G325200 chr4D 85.597 243 18 10 128 367 338106794 338107022 3.310000e-59 239.0
15 TraesCS3B01G325200 chr6B 96.377 138 4 1 1 137 406131164 406131301 2.580000e-55 226.0
16 TraesCS3B01G325200 chr6B 95.683 139 6 0 1 139 378608504 378608366 9.260000e-55 224.0
17 TraesCS3B01G325200 chr6B 86.275 204 26 2 1031 1233 77111887 77112089 1.200000e-53 220.0
18 TraesCS3B01G325200 chr6B 84.112 107 14 2 304 410 338765216 338765113 1.630000e-17 100.0
19 TraesCS3B01G325200 chr4B 97.015 134 4 0 1 134 538313746 538313879 2.580000e-55 226.0
20 TraesCS3B01G325200 chr4B 88.820 161 17 1 264 424 311771731 311771890 2.020000e-46 196.0
21 TraesCS3B01G325200 chr4B 89.474 152 15 1 264 415 280785617 280785767 9.400000e-45 191.0
22 TraesCS3B01G325200 chr5B 95.683 139 6 0 1 139 267531450 267531312 9.260000e-55 224.0
23 TraesCS3B01G325200 chrUn 95.070 142 6 1 1 141 190129904 190129763 3.330000e-54 222.0
24 TraesCS3B01G325200 chrUn 95.070 142 6 1 1 141 221769138 221769279 3.330000e-54 222.0
25 TraesCS3B01G325200 chrUn 95.070 142 6 1 1 141 342422606 342422465 3.330000e-54 222.0
26 TraesCS3B01G325200 chrUn 89.474 152 15 1 264 415 470843512 470843662 9.400000e-45 191.0
27 TraesCS3B01G325200 chrUn 88.816 152 15 2 264 415 182176355 182176504 4.370000e-43 185.0
28 TraesCS3B01G325200 chrUn 90.164 61 6 0 364 424 474231739 474231679 2.120000e-11 80.5
29 TraesCS3B01G325200 chr7B 95.070 142 6 1 1 141 739812383 739812242 3.330000e-54 222.0
30 TraesCS3B01G325200 chr1B 94.928 138 5 2 1 138 486645295 486645430 5.580000e-52 215.0
31 TraesCS3B01G325200 chr1D 89.103 156 12 4 129 279 106544571 106544726 3.380000e-44 189.0
32 TraesCS3B01G325200 chr4A 87.059 85 11 0 340 424 629442259 629442175 2.110000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G325200 chr3B 526123136 526125708 2572 True 4752.000000 4752 100.000000 1 2573 1 chr3B.!!$R1 2572
1 TraesCS3B01G325200 chr3A 519273004 519275129 2125 True 2579.000000 2579 88.761000 438 2568 1 chr3A.!!$R1 2130
2 TraesCS3B01G325200 chr3D 400338164 400340280 2116 True 846.333333 1382 87.963667 438 2440 3 chr3D.!!$R1 2002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 233 0.032813 CCTAGGTGACCGGAACCCTA 60.033 60.0 22.31 18.08 38.57 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 2334 0.327924 ATGAATGCTCCGGTGGACAA 59.672 50.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.355502 TCGAGAGAGCCCGAACCT 59.644 61.111 0.00 0.00 34.84 3.50
30 31 2.046864 TCGAGAGAGCCCGAACCTG 61.047 63.158 0.00 0.00 34.84 4.00
31 32 2.896443 GAGAGAGCCCGAACCTGG 59.104 66.667 0.00 0.00 0.00 4.45
40 41 1.984066 CCCGAACCTGGGTAAAAACA 58.016 50.000 0.00 0.00 44.76 2.83
41 42 2.521126 CCCGAACCTGGGTAAAAACAT 58.479 47.619 0.00 0.00 44.76 2.71
42 43 2.490509 CCCGAACCTGGGTAAAAACATC 59.509 50.000 0.00 0.00 44.76 3.06
43 44 2.160813 CCGAACCTGGGTAAAAACATCG 59.839 50.000 0.00 0.00 0.00 3.84
44 45 2.809696 CGAACCTGGGTAAAAACATCGT 59.190 45.455 0.00 0.00 0.00 3.73
45 46 3.364565 CGAACCTGGGTAAAAACATCGTG 60.365 47.826 0.00 0.00 0.00 4.35
46 47 3.217681 ACCTGGGTAAAAACATCGTGT 57.782 42.857 0.00 0.00 0.00 4.49
47 48 3.143728 ACCTGGGTAAAAACATCGTGTC 58.856 45.455 0.00 0.00 0.00 3.67
48 49 2.486592 CCTGGGTAAAAACATCGTGTCC 59.513 50.000 0.00 0.00 0.00 4.02
49 50 2.486592 CTGGGTAAAAACATCGTGTCCC 59.513 50.000 0.00 0.00 31.92 4.46
50 51 2.106857 TGGGTAAAAACATCGTGTCCCT 59.893 45.455 10.79 0.00 32.37 4.20
51 52 3.151554 GGGTAAAAACATCGTGTCCCTT 58.848 45.455 0.00 0.00 29.50 3.95
52 53 3.057806 GGGTAAAAACATCGTGTCCCTTG 60.058 47.826 0.00 0.00 29.50 3.61
53 54 3.566742 GGTAAAAACATCGTGTCCCTTGT 59.433 43.478 0.00 0.00 0.00 3.16
54 55 3.982576 AAAAACATCGTGTCCCTTGTC 57.017 42.857 0.00 0.00 0.00 3.18
55 56 2.930826 AAACATCGTGTCCCTTGTCT 57.069 45.000 0.00 0.00 0.00 3.41
56 57 2.457366 AACATCGTGTCCCTTGTCTC 57.543 50.000 0.00 0.00 0.00 3.36
57 58 0.608640 ACATCGTGTCCCTTGTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
58 59 0.898320 CATCGTGTCCCTTGTCTCCT 59.102 55.000 0.00 0.00 0.00 3.69
59 60 0.898320 ATCGTGTCCCTTGTCTCCTG 59.102 55.000 0.00 0.00 0.00 3.86
60 61 0.469331 TCGTGTCCCTTGTCTCCTGT 60.469 55.000 0.00 0.00 0.00 4.00
61 62 0.393077 CGTGTCCCTTGTCTCCTGTT 59.607 55.000 0.00 0.00 0.00 3.16
62 63 1.616865 CGTGTCCCTTGTCTCCTGTTA 59.383 52.381 0.00 0.00 0.00 2.41
63 64 2.609737 CGTGTCCCTTGTCTCCTGTTAC 60.610 54.545 0.00 0.00 0.00 2.50
64 65 1.975680 TGTCCCTTGTCTCCTGTTACC 59.024 52.381 0.00 0.00 0.00 2.85
65 66 1.975680 GTCCCTTGTCTCCTGTTACCA 59.024 52.381 0.00 0.00 0.00 3.25
66 67 2.572104 GTCCCTTGTCTCCTGTTACCAT 59.428 50.000 0.00 0.00 0.00 3.55
67 68 2.838202 TCCCTTGTCTCCTGTTACCATC 59.162 50.000 0.00 0.00 0.00 3.51
68 69 2.092914 CCCTTGTCTCCTGTTACCATCC 60.093 54.545 0.00 0.00 0.00 3.51
69 70 2.418746 CCTTGTCTCCTGTTACCATCCG 60.419 54.545 0.00 0.00 0.00 4.18
70 71 0.535335 TGTCTCCTGTTACCATCCGC 59.465 55.000 0.00 0.00 0.00 5.54
71 72 0.179081 GTCTCCTGTTACCATCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
72 73 0.325296 TCTCCTGTTACCATCCGCCT 60.325 55.000 0.00 0.00 0.00 5.52
73 74 1.063492 TCTCCTGTTACCATCCGCCTA 60.063 52.381 0.00 0.00 0.00 3.93
74 75 1.341531 CTCCTGTTACCATCCGCCTAG 59.658 57.143 0.00 0.00 0.00 3.02
75 76 1.063492 TCCTGTTACCATCCGCCTAGA 60.063 52.381 0.00 0.00 0.00 2.43
76 77 1.068741 CCTGTTACCATCCGCCTAGAC 59.931 57.143 0.00 0.00 0.00 2.59
77 78 0.742505 TGTTACCATCCGCCTAGACG 59.257 55.000 0.00 0.00 0.00 4.18
78 79 0.596859 GTTACCATCCGCCTAGACGC 60.597 60.000 0.00 0.00 0.00 5.19
79 80 1.038681 TTACCATCCGCCTAGACGCA 61.039 55.000 0.00 0.00 0.00 5.24
80 81 1.731433 TACCATCCGCCTAGACGCAC 61.731 60.000 0.00 0.00 0.00 5.34
81 82 2.494445 CATCCGCCTAGACGCACA 59.506 61.111 0.00 0.00 0.00 4.57
82 83 1.589993 CATCCGCCTAGACGCACAG 60.590 63.158 0.00 0.00 0.00 3.66
83 84 2.052690 ATCCGCCTAGACGCACAGT 61.053 57.895 0.00 0.00 0.00 3.55
84 85 1.605058 ATCCGCCTAGACGCACAGTT 61.605 55.000 0.00 0.00 0.00 3.16
85 86 1.374252 CCGCCTAGACGCACAGTTT 60.374 57.895 0.00 0.00 0.00 2.66
86 87 1.626654 CCGCCTAGACGCACAGTTTG 61.627 60.000 0.00 0.00 0.00 2.93
87 88 0.666274 CGCCTAGACGCACAGTTTGA 60.666 55.000 0.00 0.00 0.00 2.69
88 89 1.071605 GCCTAGACGCACAGTTTGAG 58.928 55.000 0.00 0.00 0.00 3.02
89 90 1.336887 GCCTAGACGCACAGTTTGAGA 60.337 52.381 0.00 0.00 0.00 3.27
90 91 2.866460 GCCTAGACGCACAGTTTGAGAA 60.866 50.000 0.00 0.00 0.00 2.87
91 92 2.731976 CCTAGACGCACAGTTTGAGAAC 59.268 50.000 0.00 0.00 35.97 3.01
92 93 1.583054 AGACGCACAGTTTGAGAACC 58.417 50.000 0.00 0.00 36.39 3.62
93 94 0.586802 GACGCACAGTTTGAGAACCC 59.413 55.000 0.00 0.00 36.39 4.11
94 95 0.818040 ACGCACAGTTTGAGAACCCC 60.818 55.000 0.00 0.00 36.39 4.95
95 96 0.535102 CGCACAGTTTGAGAACCCCT 60.535 55.000 0.00 0.00 36.39 4.79
96 97 1.270625 CGCACAGTTTGAGAACCCCTA 60.271 52.381 0.00 0.00 36.39 3.53
97 98 2.152016 GCACAGTTTGAGAACCCCTAC 58.848 52.381 0.00 0.00 36.39 3.18
98 99 2.779506 CACAGTTTGAGAACCCCTACC 58.220 52.381 0.00 0.00 36.39 3.18
99 100 1.703513 ACAGTTTGAGAACCCCTACCC 59.296 52.381 0.00 0.00 36.39 3.69
100 101 0.981943 AGTTTGAGAACCCCTACCCG 59.018 55.000 0.00 0.00 36.39 5.28
101 102 0.978907 GTTTGAGAACCCCTACCCGA 59.021 55.000 0.00 0.00 0.00 5.14
102 103 1.066358 GTTTGAGAACCCCTACCCGAG 60.066 57.143 0.00 0.00 0.00 4.63
103 104 0.410663 TTGAGAACCCCTACCCGAGA 59.589 55.000 0.00 0.00 0.00 4.04
104 105 0.635009 TGAGAACCCCTACCCGAGAT 59.365 55.000 0.00 0.00 0.00 2.75
105 106 1.330234 GAGAACCCCTACCCGAGATC 58.670 60.000 0.00 0.00 0.00 2.75
106 107 0.105607 AGAACCCCTACCCGAGATCC 60.106 60.000 0.00 0.00 0.00 3.36
107 108 1.457079 AACCCCTACCCGAGATCCG 60.457 63.158 0.00 0.00 38.18 4.18
108 109 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
109 110 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
110 111 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
111 112 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
112 113 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
114 115 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
115 116 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
116 117 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
117 118 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
118 119 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
119 120 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
120 121 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
121 122 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
129 130 0.942252 GGTTTTGACACCGACACTCC 59.058 55.000 0.00 0.00 0.00 3.85
130 131 0.942252 GTTTTGACACCGACACTCCC 59.058 55.000 0.00 0.00 0.00 4.30
131 132 0.179040 TTTTGACACCGACACTCCCC 60.179 55.000 0.00 0.00 0.00 4.81
132 133 1.052124 TTTGACACCGACACTCCCCT 61.052 55.000 0.00 0.00 0.00 4.79
133 134 1.052124 TTGACACCGACACTCCCCTT 61.052 55.000 0.00 0.00 0.00 3.95
134 135 1.292541 GACACCGACACTCCCCTTC 59.707 63.158 0.00 0.00 0.00 3.46
135 136 2.168666 GACACCGACACTCCCCTTCC 62.169 65.000 0.00 0.00 0.00 3.46
136 137 2.606826 ACCGACACTCCCCTTCCC 60.607 66.667 0.00 0.00 0.00 3.97
137 138 2.606519 CCGACACTCCCCTTCCCA 60.607 66.667 0.00 0.00 0.00 4.37
138 139 2.221299 CCGACACTCCCCTTCCCAA 61.221 63.158 0.00 0.00 0.00 4.12
139 140 1.562672 CCGACACTCCCCTTCCCAAT 61.563 60.000 0.00 0.00 0.00 3.16
140 141 0.107654 CGACACTCCCCTTCCCAATC 60.108 60.000 0.00 0.00 0.00 2.67
141 142 0.107654 GACACTCCCCTTCCCAATCG 60.108 60.000 0.00 0.00 0.00 3.34
142 143 1.224592 CACTCCCCTTCCCAATCGG 59.775 63.158 0.00 0.00 0.00 4.18
143 144 2.193248 CTCCCCTTCCCAATCGGC 59.807 66.667 0.00 0.00 0.00 5.54
144 145 2.286121 TCCCCTTCCCAATCGGCT 60.286 61.111 0.00 0.00 0.00 5.52
145 146 2.124151 CCCCTTCCCAATCGGCTG 60.124 66.667 0.00 0.00 0.00 4.85
146 147 2.677228 CCCTTCCCAATCGGCTGT 59.323 61.111 0.00 0.00 0.00 4.40
147 148 1.000896 CCCTTCCCAATCGGCTGTT 60.001 57.895 0.00 0.00 0.00 3.16
148 149 0.611896 CCCTTCCCAATCGGCTGTTT 60.612 55.000 0.00 0.00 0.00 2.83
149 150 0.527565 CCTTCCCAATCGGCTGTTTG 59.472 55.000 9.06 9.06 0.00 2.93
150 151 0.527565 CTTCCCAATCGGCTGTTTGG 59.472 55.000 23.40 23.40 42.30 3.28
151 152 1.531739 TTCCCAATCGGCTGTTTGGC 61.532 55.000 24.52 0.00 41.63 4.52
158 159 2.736531 GGCTGTTTGGCCCAACTG 59.263 61.111 19.58 19.19 45.92 3.16
159 160 2.736531 GCTGTTTGGCCCAACTGG 59.263 61.111 22.73 15.39 37.09 4.00
170 171 1.974543 CCAACTGGGCATCCAAACC 59.025 57.895 0.00 0.00 43.51 3.27
171 172 0.831288 CCAACTGGGCATCCAAACCA 60.831 55.000 0.00 0.00 43.51 3.67
172 173 0.318120 CAACTGGGCATCCAAACCAC 59.682 55.000 0.00 0.00 43.51 4.16
173 174 0.831711 AACTGGGCATCCAAACCACC 60.832 55.000 0.00 0.00 43.51 4.61
174 175 1.228831 CTGGGCATCCAAACCACCA 60.229 57.895 0.00 0.00 43.51 4.17
175 176 1.228831 TGGGCATCCAAACCACCAG 60.229 57.895 0.00 0.00 40.73 4.00
176 177 2.649129 GGGCATCCAAACCACCAGC 61.649 63.158 0.00 0.00 0.00 4.85
177 178 2.649129 GGCATCCAAACCACCAGCC 61.649 63.158 0.00 0.00 0.00 4.85
178 179 2.649129 GCATCCAAACCACCAGCCC 61.649 63.158 0.00 0.00 0.00 5.19
179 180 1.228831 CATCCAAACCACCAGCCCA 60.229 57.895 0.00 0.00 0.00 5.36
180 181 1.228862 ATCCAAACCACCAGCCCAC 60.229 57.895 0.00 0.00 0.00 4.61
181 182 2.017668 ATCCAAACCACCAGCCCACA 62.018 55.000 0.00 0.00 0.00 4.17
182 183 2.202395 CCAAACCACCAGCCCACAG 61.202 63.158 0.00 0.00 0.00 3.66
183 184 2.198426 AAACCACCAGCCCACAGG 59.802 61.111 0.00 0.00 0.00 4.00
203 204 4.864334 CAGCCGCCCCCATCACTC 62.864 72.222 0.00 0.00 0.00 3.51
207 208 3.411517 CGCCCCCATCACTCCCTT 61.412 66.667 0.00 0.00 0.00 3.95
208 209 2.070039 CGCCCCCATCACTCCCTTA 61.070 63.158 0.00 0.00 0.00 2.69
209 210 1.418908 CGCCCCCATCACTCCCTTAT 61.419 60.000 0.00 0.00 0.00 1.73
210 211 0.402121 GCCCCCATCACTCCCTTATC 59.598 60.000 0.00 0.00 0.00 1.75
211 212 1.068121 CCCCCATCACTCCCTTATCC 58.932 60.000 0.00 0.00 0.00 2.59
212 213 1.068121 CCCCATCACTCCCTTATCCC 58.932 60.000 0.00 0.00 0.00 3.85
213 214 1.068121 CCCATCACTCCCTTATCCCC 58.932 60.000 0.00 0.00 0.00 4.81
214 215 1.068121 CCATCACTCCCTTATCCCCC 58.932 60.000 0.00 0.00 0.00 5.40
215 216 1.416608 CCATCACTCCCTTATCCCCCT 60.417 57.143 0.00 0.00 0.00 4.79
216 217 2.158004 CCATCACTCCCTTATCCCCCTA 60.158 54.545 0.00 0.00 0.00 3.53
217 218 3.177228 CATCACTCCCTTATCCCCCTAG 58.823 54.545 0.00 0.00 0.00 3.02
218 219 1.508185 TCACTCCCTTATCCCCCTAGG 59.492 57.143 0.06 0.06 0.00 3.02
219 220 1.223337 CACTCCCTTATCCCCCTAGGT 59.777 57.143 8.29 0.00 36.75 3.08
220 221 1.223337 ACTCCCTTATCCCCCTAGGTG 59.777 57.143 8.29 0.00 36.75 4.00
221 222 1.508185 CTCCCTTATCCCCCTAGGTGA 59.492 57.143 8.29 4.26 36.75 4.02
222 223 1.222298 TCCCTTATCCCCCTAGGTGAC 59.778 57.143 8.29 0.00 36.75 3.67
223 224 1.730851 CCTTATCCCCCTAGGTGACC 58.269 60.000 8.29 0.00 36.75 4.02
224 225 1.339097 CTTATCCCCCTAGGTGACCG 58.661 60.000 8.29 0.00 36.75 4.79
225 226 0.105349 TTATCCCCCTAGGTGACCGG 60.105 60.000 8.29 0.00 36.75 5.28
226 227 1.000590 TATCCCCCTAGGTGACCGGA 61.001 60.000 9.46 4.74 36.75 5.14
227 228 1.893588 ATCCCCCTAGGTGACCGGAA 61.894 60.000 9.46 0.00 36.75 4.30
228 229 2.364780 CCCCCTAGGTGACCGGAAC 61.365 68.421 9.46 5.88 0.00 3.62
229 230 2.364780 CCCCTAGGTGACCGGAACC 61.365 68.421 19.54 19.54 38.03 3.62
230 231 2.364780 CCCTAGGTGACCGGAACCC 61.365 68.421 22.31 12.42 38.57 4.11
231 232 1.305887 CCTAGGTGACCGGAACCCT 60.306 63.158 22.31 17.95 38.57 4.34
232 233 0.032813 CCTAGGTGACCGGAACCCTA 60.033 60.000 22.31 18.08 38.57 3.53
233 234 1.400737 CTAGGTGACCGGAACCCTAG 58.599 60.000 22.31 22.06 40.32 3.02
234 235 0.685458 TAGGTGACCGGAACCCTAGC 60.685 60.000 22.31 6.49 38.57 3.42
235 236 2.183555 GTGACCGGAACCCTAGCG 59.816 66.667 9.46 0.00 0.00 4.26
236 237 3.072468 TGACCGGAACCCTAGCGG 61.072 66.667 9.46 4.42 37.81 5.52
244 245 2.365237 ACCCTAGCGGTTCCCTCC 60.365 66.667 0.00 0.00 45.36 4.30
245 246 3.162154 CCCTAGCGGTTCCCTCCC 61.162 72.222 0.00 0.00 0.00 4.30
246 247 2.365105 CCTAGCGGTTCCCTCCCA 60.365 66.667 0.00 0.00 0.00 4.37
247 248 1.993391 CCTAGCGGTTCCCTCCCAA 60.993 63.158 0.00 0.00 0.00 4.12
248 249 1.221021 CTAGCGGTTCCCTCCCAAC 59.779 63.158 0.00 0.00 0.00 3.77
249 250 1.229400 TAGCGGTTCCCTCCCAACT 60.229 57.895 0.00 0.00 0.00 3.16
250 251 1.262640 TAGCGGTTCCCTCCCAACTC 61.263 60.000 0.00 0.00 0.00 3.01
251 252 2.264794 CGGTTCCCTCCCAACTCG 59.735 66.667 0.00 0.00 0.00 4.18
252 253 2.580601 CGGTTCCCTCCCAACTCGT 61.581 63.158 0.00 0.00 0.00 4.18
253 254 1.295746 GGTTCCCTCCCAACTCGTC 59.704 63.158 0.00 0.00 0.00 4.20
254 255 1.295746 GTTCCCTCCCAACTCGTCC 59.704 63.158 0.00 0.00 0.00 4.79
255 256 1.916777 TTCCCTCCCAACTCGTCCC 60.917 63.158 0.00 0.00 0.00 4.46
256 257 3.400054 CCCTCCCAACTCGTCCCC 61.400 72.222 0.00 0.00 0.00 4.81
257 258 2.606519 CCTCCCAACTCGTCCCCA 60.607 66.667 0.00 0.00 0.00 4.96
258 259 2.663196 CTCCCAACTCGTCCCCAC 59.337 66.667 0.00 0.00 0.00 4.61
259 260 1.913762 CTCCCAACTCGTCCCCACT 60.914 63.158 0.00 0.00 0.00 4.00
260 261 1.460689 TCCCAACTCGTCCCCACTT 60.461 57.895 0.00 0.00 0.00 3.16
261 262 1.003718 CCCAACTCGTCCCCACTTC 60.004 63.158 0.00 0.00 0.00 3.01
262 263 1.003718 CCAACTCGTCCCCACTTCC 60.004 63.158 0.00 0.00 0.00 3.46
263 264 1.003718 CAACTCGTCCCCACTTCCC 60.004 63.158 0.00 0.00 0.00 3.97
264 265 2.222013 AACTCGTCCCCACTTCCCC 61.222 63.158 0.00 0.00 0.00 4.81
265 266 2.284699 CTCGTCCCCACTTCCCCT 60.285 66.667 0.00 0.00 0.00 4.79
266 267 2.284405 TCGTCCCCACTTCCCCTC 60.284 66.667 0.00 0.00 0.00 4.30
267 268 3.400054 CGTCCCCACTTCCCCTCC 61.400 72.222 0.00 0.00 0.00 4.30
268 269 3.015753 GTCCCCACTTCCCCTCCC 61.016 72.222 0.00 0.00 0.00 4.30
269 270 4.364686 TCCCCACTTCCCCTCCCC 62.365 72.222 0.00 0.00 0.00 4.81
271 272 4.693915 CCCACTTCCCCTCCCCCA 62.694 72.222 0.00 0.00 0.00 4.96
272 273 3.339093 CCACTTCCCCTCCCCCAC 61.339 72.222 0.00 0.00 0.00 4.61
273 274 3.717294 CACTTCCCCTCCCCCACG 61.717 72.222 0.00 0.00 0.00 4.94
274 275 3.936566 ACTTCCCCTCCCCCACGA 61.937 66.667 0.00 0.00 0.00 4.35
275 276 2.366972 CTTCCCCTCCCCCACGAT 60.367 66.667 0.00 0.00 0.00 3.73
276 277 2.366435 TTCCCCTCCCCCACGATC 60.366 66.667 0.00 0.00 0.00 3.69
277 278 4.492303 TCCCCTCCCCCACGATCC 62.492 72.222 0.00 0.00 0.00 3.36
280 281 4.499116 CCTCCCCCACGATCCCCT 62.499 72.222 0.00 0.00 0.00 4.79
281 282 2.844839 CTCCCCCACGATCCCCTC 60.845 72.222 0.00 0.00 0.00 4.30
290 291 3.696676 GATCCCCTCGCCCCGATC 61.697 72.222 0.00 0.00 34.61 3.69
300 301 4.499116 CCCCGATCCCCTCCACCT 62.499 72.222 0.00 0.00 0.00 4.00
301 302 2.844839 CCCGATCCCCTCCACCTC 60.845 72.222 0.00 0.00 0.00 3.85
302 303 2.283809 CCGATCCCCTCCACCTCT 59.716 66.667 0.00 0.00 0.00 3.69
303 304 1.383248 CCGATCCCCTCCACCTCTT 60.383 63.158 0.00 0.00 0.00 2.85
304 305 1.403687 CCGATCCCCTCCACCTCTTC 61.404 65.000 0.00 0.00 0.00 2.87
305 306 1.403687 CGATCCCCTCCACCTCTTCC 61.404 65.000 0.00 0.00 0.00 3.46
306 307 1.383248 ATCCCCTCCACCTCTTCCG 60.383 63.158 0.00 0.00 0.00 4.30
307 308 3.787001 CCCCTCCACCTCTTCCGC 61.787 72.222 0.00 0.00 0.00 5.54
308 309 2.685380 CCCTCCACCTCTTCCGCT 60.685 66.667 0.00 0.00 0.00 5.52
309 310 2.726351 CCCTCCACCTCTTCCGCTC 61.726 68.421 0.00 0.00 0.00 5.03
310 311 2.492090 CTCCACCTCTTCCGCTCG 59.508 66.667 0.00 0.00 0.00 5.03
311 312 2.282958 TCCACCTCTTCCGCTCGT 60.283 61.111 0.00 0.00 0.00 4.18
312 313 1.878656 CTCCACCTCTTCCGCTCGTT 61.879 60.000 0.00 0.00 0.00 3.85
313 314 1.446272 CCACCTCTTCCGCTCGTTC 60.446 63.158 0.00 0.00 0.00 3.95
314 315 1.587054 CACCTCTTCCGCTCGTTCT 59.413 57.895 0.00 0.00 0.00 3.01
315 316 0.809385 CACCTCTTCCGCTCGTTCTA 59.191 55.000 0.00 0.00 0.00 2.10
316 317 1.096416 ACCTCTTCCGCTCGTTCTAG 58.904 55.000 0.00 0.00 0.00 2.43
317 318 1.339824 ACCTCTTCCGCTCGTTCTAGA 60.340 52.381 0.00 0.00 0.00 2.43
318 319 1.950909 CCTCTTCCGCTCGTTCTAGAT 59.049 52.381 0.00 0.00 0.00 1.98
319 320 2.031508 CCTCTTCCGCTCGTTCTAGATC 60.032 54.545 0.00 0.00 0.00 2.75
320 321 1.598132 TCTTCCGCTCGTTCTAGATCG 59.402 52.381 15.58 15.58 0.00 3.69
321 322 4.924924 CCGCTCGTTCTAGATCGG 57.075 61.111 20.13 13.10 42.31 4.18
322 323 1.164662 TCCGCTCGTTCTAGATCGGG 61.165 60.000 20.13 18.66 46.36 5.14
323 324 1.283181 CGCTCGTTCTAGATCGGGG 59.717 63.158 21.48 15.84 0.00 5.73
324 325 1.007154 GCTCGTTCTAGATCGGGGC 60.007 63.158 21.48 19.78 0.00 5.80
325 326 1.735376 GCTCGTTCTAGATCGGGGCA 61.735 60.000 21.48 4.16 0.00 5.36
326 327 0.962489 CTCGTTCTAGATCGGGGCAT 59.038 55.000 20.13 0.00 0.00 4.40
327 328 0.673985 TCGTTCTAGATCGGGGCATG 59.326 55.000 20.13 0.00 0.00 4.06
328 329 0.673985 CGTTCTAGATCGGGGCATGA 59.326 55.000 14.20 0.00 0.00 3.07
329 330 1.068588 CGTTCTAGATCGGGGCATGAA 59.931 52.381 14.20 0.00 0.00 2.57
330 331 2.484889 GTTCTAGATCGGGGCATGAAC 58.515 52.381 0.00 0.00 0.00 3.18
331 332 2.088104 TCTAGATCGGGGCATGAACT 57.912 50.000 0.00 0.00 0.00 3.01
332 333 1.964223 TCTAGATCGGGGCATGAACTC 59.036 52.381 0.00 0.00 0.00 3.01
333 334 0.673985 TAGATCGGGGCATGAACTCG 59.326 55.000 0.00 0.00 0.00 4.18
334 335 2.203070 ATCGGGGCATGAACTCGC 60.203 61.111 0.00 0.00 0.00 5.03
339 340 3.017323 GGCATGAACTCGCCGATG 58.983 61.111 0.00 0.00 38.82 3.84
340 341 2.325857 GCATGAACTCGCCGATGC 59.674 61.111 0.00 0.00 34.86 3.91
341 342 3.017323 CATGAACTCGCCGATGCC 58.983 61.111 0.00 0.00 0.00 4.40
342 343 1.815003 CATGAACTCGCCGATGCCA 60.815 57.895 0.00 0.00 0.00 4.92
343 344 1.815421 ATGAACTCGCCGATGCCAC 60.815 57.895 0.00 0.00 0.00 5.01
344 345 3.554692 GAACTCGCCGATGCCACG 61.555 66.667 0.00 0.00 0.00 4.94
345 346 3.982372 GAACTCGCCGATGCCACGA 62.982 63.158 0.00 0.00 35.09 4.35
346 347 3.371097 AACTCGCCGATGCCACGAT 62.371 57.895 0.00 0.00 34.94 3.73
347 348 3.333189 CTCGCCGATGCCACGATG 61.333 66.667 0.00 0.00 34.94 3.84
351 352 2.592574 CCGATGCCACGATGCCAT 60.593 61.111 0.00 0.00 35.09 4.40
352 353 2.610694 CCGATGCCACGATGCCATC 61.611 63.158 0.00 0.00 35.09 3.51
360 361 4.889856 CGATGCCATCGCCGTCCA 62.890 66.667 14.88 0.00 46.55 4.02
361 362 2.281070 GATGCCATCGCCGTCCAT 60.281 61.111 0.00 0.00 0.00 3.41
362 363 2.592574 ATGCCATCGCCGTCCATG 60.593 61.111 0.00 0.00 0.00 3.66
363 364 4.854924 TGCCATCGCCGTCCATGG 62.855 66.667 4.97 4.97 42.39 3.66
364 365 4.856801 GCCATCGCCGTCCATGGT 62.857 66.667 12.58 0.00 41.63 3.55
365 366 2.588877 CCATCGCCGTCCATGGTC 60.589 66.667 12.58 5.07 35.67 4.02
366 367 2.961721 CATCGCCGTCCATGGTCG 60.962 66.667 22.37 22.37 0.00 4.79
367 368 3.458163 ATCGCCGTCCATGGTCGT 61.458 61.111 25.98 8.32 32.70 4.34
368 369 3.426117 ATCGCCGTCCATGGTCGTC 62.426 63.158 25.98 15.56 32.70 4.20
371 372 3.445687 CCGTCCATGGTCGTCGGA 61.446 66.667 25.98 0.00 43.22 4.55
372 373 2.102357 CGTCCATGGTCGTCGGAG 59.898 66.667 21.26 0.00 0.00 4.63
373 374 2.202756 GTCCATGGTCGTCGGAGC 60.203 66.667 12.58 0.00 41.07 4.70
374 375 3.458163 TCCATGGTCGTCGGAGCC 61.458 66.667 12.58 0.00 39.95 4.70
375 376 4.873129 CCATGGTCGTCGGAGCCG 62.873 72.222 2.57 1.74 39.95 5.52
394 395 2.687902 CCCCCTCGTCTACCTCCA 59.312 66.667 0.00 0.00 0.00 3.86
395 396 1.757340 CCCCCTCGTCTACCTCCAC 60.757 68.421 0.00 0.00 0.00 4.02
396 397 1.757340 CCCCTCGTCTACCTCCACC 60.757 68.421 0.00 0.00 0.00 4.61
397 398 1.306970 CCCTCGTCTACCTCCACCT 59.693 63.158 0.00 0.00 0.00 4.00
398 399 0.324460 CCCTCGTCTACCTCCACCTT 60.324 60.000 0.00 0.00 0.00 3.50
399 400 0.818296 CCTCGTCTACCTCCACCTTG 59.182 60.000 0.00 0.00 0.00 3.61
400 401 1.546961 CTCGTCTACCTCCACCTTGT 58.453 55.000 0.00 0.00 0.00 3.16
401 402 1.473278 CTCGTCTACCTCCACCTTGTC 59.527 57.143 0.00 0.00 0.00 3.18
402 403 0.170561 CGTCTACCTCCACCTTGTCG 59.829 60.000 0.00 0.00 0.00 4.35
403 404 0.531200 GTCTACCTCCACCTTGTCGG 59.469 60.000 0.00 0.00 39.35 4.79
404 405 0.406750 TCTACCTCCACCTTGTCGGA 59.593 55.000 0.00 0.00 36.31 4.55
405 406 0.531200 CTACCTCCACCTTGTCGGAC 59.469 60.000 0.00 0.00 36.31 4.79
406 407 1.246056 TACCTCCACCTTGTCGGACG 61.246 60.000 3.34 0.00 36.31 4.79
407 408 2.432628 CTCCACCTTGTCGGACGC 60.433 66.667 3.34 0.00 36.31 5.19
408 409 3.934391 CTCCACCTTGTCGGACGCC 62.934 68.421 3.34 0.00 36.31 5.68
409 410 4.003788 CCACCTTGTCGGACGCCT 62.004 66.667 3.34 0.00 36.31 5.52
410 411 2.432628 CACCTTGTCGGACGCCTC 60.433 66.667 3.34 0.00 36.31 4.70
411 412 4.052229 ACCTTGTCGGACGCCTCG 62.052 66.667 3.34 0.00 36.31 4.63
412 413 4.052229 CCTTGTCGGACGCCTCGT 62.052 66.667 3.34 0.00 45.10 4.18
421 422 3.941081 ACGCCTCGTCATCCTCAT 58.059 55.556 0.00 0.00 33.69 2.90
422 423 1.736586 ACGCCTCGTCATCCTCATC 59.263 57.895 0.00 0.00 33.69 2.92
423 424 1.006805 CGCCTCGTCATCCTCATCC 60.007 63.158 0.00 0.00 0.00 3.51
424 425 1.006805 GCCTCGTCATCCTCATCCG 60.007 63.158 0.00 0.00 0.00 4.18
425 426 1.739338 GCCTCGTCATCCTCATCCGT 61.739 60.000 0.00 0.00 0.00 4.69
426 427 1.605753 CCTCGTCATCCTCATCCGTA 58.394 55.000 0.00 0.00 0.00 4.02
427 428 1.537638 CCTCGTCATCCTCATCCGTAG 59.462 57.143 0.00 0.00 0.00 3.51
428 429 2.495084 CTCGTCATCCTCATCCGTAGA 58.505 52.381 0.00 0.00 0.00 2.59
429 430 2.879026 CTCGTCATCCTCATCCGTAGAA 59.121 50.000 0.00 0.00 0.00 2.10
430 431 2.879026 TCGTCATCCTCATCCGTAGAAG 59.121 50.000 0.00 0.00 0.00 2.85
431 432 2.879026 CGTCATCCTCATCCGTAGAAGA 59.121 50.000 0.00 0.00 0.00 2.87
432 433 3.504134 CGTCATCCTCATCCGTAGAAGAT 59.496 47.826 0.00 0.00 0.00 2.40
433 434 4.022762 CGTCATCCTCATCCGTAGAAGATT 60.023 45.833 0.00 0.00 0.00 2.40
434 435 5.465935 GTCATCCTCATCCGTAGAAGATTC 58.534 45.833 0.00 0.00 0.00 2.52
435 436 5.010112 GTCATCCTCATCCGTAGAAGATTCA 59.990 44.000 0.00 0.00 0.00 2.57
436 437 5.777223 TCATCCTCATCCGTAGAAGATTCAT 59.223 40.000 0.00 0.00 0.00 2.57
453 454 7.055667 AGATTCATAGAAGCCTGATTTCGTA 57.944 36.000 0.00 0.00 0.00 3.43
553 563 6.886459 AGGCTTGTAGATGACACATTACAATT 59.114 34.615 0.26 0.00 37.96 2.32
555 565 7.698130 GGCTTGTAGATGACACATTACAATTTC 59.302 37.037 0.26 0.00 37.96 2.17
558 568 9.500785 TTGTAGATGACACATTACAATTTCTGA 57.499 29.630 0.00 0.00 37.96 3.27
574 584 2.163509 TCTGAGTAGACACCTGCACTC 58.836 52.381 0.00 0.00 38.30 3.51
582 592 2.297597 AGACACCTGCACTCTGTACTTC 59.702 50.000 0.00 0.00 0.00 3.01
583 593 2.297597 GACACCTGCACTCTGTACTTCT 59.702 50.000 0.00 0.00 0.00 2.85
584 594 2.297597 ACACCTGCACTCTGTACTTCTC 59.702 50.000 0.00 0.00 0.00 2.87
585 595 1.896465 ACCTGCACTCTGTACTTCTCC 59.104 52.381 0.00 0.00 0.00 3.71
586 596 1.895798 CCTGCACTCTGTACTTCTCCA 59.104 52.381 0.00 0.00 0.00 3.86
588 598 2.560542 CTGCACTCTGTACTTCTCCAGT 59.439 50.000 0.00 0.00 39.87 4.00
608 619 5.415701 CCAGTACAATAAACACAAGCAGGAT 59.584 40.000 0.00 0.00 0.00 3.24
612 623 6.254281 ACAATAAACACAAGCAGGATGTAC 57.746 37.500 0.00 0.00 39.31 2.90
670 681 1.141019 CGTGTCCCTGGTACCATCG 59.859 63.158 16.75 8.57 0.00 3.84
680 691 1.479323 TGGTACCATCGTGCTTAGACC 59.521 52.381 11.60 0.00 0.00 3.85
706 717 2.330216 CTTGGAATCCCCTACCTCGAT 58.670 52.381 0.00 0.00 35.38 3.59
714 725 1.550179 CCCCTACCTCGATATCAGCCA 60.550 57.143 3.12 0.00 0.00 4.75
728 739 1.906574 TCAGCCAGATTTACCTCCGTT 59.093 47.619 0.00 0.00 0.00 4.44
729 740 2.009774 CAGCCAGATTTACCTCCGTTG 58.990 52.381 0.00 0.00 0.00 4.10
732 743 1.065418 CCAGATTTACCTCCGTTGGCT 60.065 52.381 0.00 0.00 0.00 4.75
772 783 2.744243 GCCTCTCCAGCATCAGCCT 61.744 63.158 0.00 0.00 43.56 4.58
773 784 1.446791 CCTCTCCAGCATCAGCCTC 59.553 63.158 0.00 0.00 43.56 4.70
861 881 8.709386 TCAACTTCTTCTATATCAGTGAAAGC 57.291 34.615 0.00 0.00 0.00 3.51
868 888 5.763088 TCTATATCAGTGAAAGCTACGCAG 58.237 41.667 0.00 0.20 0.00 5.18
877 897 0.868406 AAGCTACGCAGACTTTGTGC 59.132 50.000 0.00 0.00 41.06 4.57
1055 1104 1.919918 CACATTCTCAGAGCGGAGAC 58.080 55.000 5.45 0.00 43.31 3.36
1253 1302 0.454600 TCGTCTACAAGGGCATCGTC 59.545 55.000 0.00 0.00 0.00 4.20
1256 1305 0.968901 TCTACAAGGGCATCGTCCGT 60.969 55.000 0.00 0.00 29.39 4.69
1494 1546 2.684374 GGTTTGTTCCCGTACTGTTGTT 59.316 45.455 0.00 0.00 0.00 2.83
1495 1547 3.876320 GGTTTGTTCCCGTACTGTTGTTA 59.124 43.478 0.00 0.00 0.00 2.41
1522 1574 4.906618 ACCGGAGTATTTTGTTCTCACAT 58.093 39.130 9.46 0.00 31.06 3.21
1523 1575 4.695455 ACCGGAGTATTTTGTTCTCACATG 59.305 41.667 9.46 0.00 31.06 3.21
1524 1576 4.695455 CCGGAGTATTTTGTTCTCACATGT 59.305 41.667 0.00 0.00 31.06 3.21
1572 1625 7.688372 AGATGTAATGAAATGCTGTTCTTACG 58.312 34.615 2.35 0.00 31.19 3.18
1632 1685 7.643569 TGAGGTGAATATTTGTGTTATGCAT 57.356 32.000 3.79 3.79 0.00 3.96
1674 1727 2.097110 TGGGGAGTAATATCAGGCGT 57.903 50.000 0.00 0.00 0.00 5.68
1682 1735 2.472695 AATATCAGGCGTGTGTGTGT 57.527 45.000 6.26 0.00 0.00 3.72
1683 1736 1.725641 ATATCAGGCGTGTGTGTGTG 58.274 50.000 6.26 0.00 0.00 3.82
1684 1737 0.676736 TATCAGGCGTGTGTGTGTGA 59.323 50.000 6.26 0.00 0.00 3.58
1733 1841 5.046591 TGTGTGCTTAGCTATTAGTTGACCT 60.047 40.000 5.60 0.00 0.00 3.85
1734 1842 5.875359 GTGTGCTTAGCTATTAGTTGACCTT 59.125 40.000 5.60 0.00 0.00 3.50
1738 1846 6.070194 TGCTTAGCTATTAGTTGACCTTCCTT 60.070 38.462 5.60 0.00 0.00 3.36
1745 1853 8.398665 GCTATTAGTTGACCTTCCTTGTATTTG 58.601 37.037 0.00 0.00 0.00 2.32
1757 1865 8.964772 CCTTCCTTGTATTTGAGATTGATTCTT 58.035 33.333 0.00 0.00 33.74 2.52
1765 1873 3.264947 TGAGATTGATTCTTGGTCTGCG 58.735 45.455 0.00 0.00 33.74 5.18
1774 1882 1.065926 TCTTGGTCTGCGAGCATTGAT 60.066 47.619 10.38 0.00 39.81 2.57
1775 1883 1.741706 CTTGGTCTGCGAGCATTGATT 59.258 47.619 10.38 0.00 39.81 2.57
1824 1932 6.670027 ACTTGAGTGTATTGGGAGTTCTATCT 59.330 38.462 0.00 0.00 0.00 1.98
1829 1937 8.840200 AGTGTATTGGGAGTTCTATCTAGAAA 57.160 34.615 0.00 0.00 43.30 2.52
1835 1943 9.732130 ATTGGGAGTTCTATCTAGAAATTATGC 57.268 33.333 0.00 0.00 43.30 3.14
1836 1944 8.497910 TGGGAGTTCTATCTAGAAATTATGCT 57.502 34.615 0.00 0.00 43.30 3.79
1837 1945 9.601810 TGGGAGTTCTATCTAGAAATTATGCTA 57.398 33.333 0.00 0.00 43.30 3.49
1871 1999 7.011773 CAGTTCAGACGACATTTGATTGTTAG 58.988 38.462 0.00 0.00 0.00 2.34
1886 2014 9.890629 TTTGATTGTTAGCTTCATATACACTCT 57.109 29.630 0.00 0.00 0.00 3.24
1993 2122 5.585047 GGCATTAATCTACTTCCGACTGTTT 59.415 40.000 0.00 0.00 0.00 2.83
2021 2152 9.964303 CTATACTGATATATTGAGTGGATGCTC 57.036 37.037 8.08 0.00 36.12 4.26
2103 2234 6.594159 CCTCAGTTTATTCGACTGGTATGTTT 59.406 38.462 4.62 0.00 43.61 2.83
2110 2241 5.910637 TTCGACTGGTATGTTTTGTGTAC 57.089 39.130 0.00 0.00 0.00 2.90
2118 2249 1.816370 TGTTTTGTGTACGCGCTTTG 58.184 45.000 5.73 0.00 0.00 2.77
2140 2271 1.336755 GTTTGGGCGACAGTTTGTGAT 59.663 47.619 0.00 0.00 0.00 3.06
2145 2276 4.776349 TGGGCGACAGTTTGTGATAATAT 58.224 39.130 0.00 0.00 0.00 1.28
2149 2285 7.500892 TGGGCGACAGTTTGTGATAATATATTT 59.499 33.333 2.68 0.00 0.00 1.40
2150 2286 8.995220 GGGCGACAGTTTGTGATAATATATTTA 58.005 33.333 2.68 0.00 0.00 1.40
2151 2287 9.807386 GGCGACAGTTTGTGATAATATATTTAC 57.193 33.333 2.68 2.34 0.00 2.01
2186 2322 9.429600 GTGTACTTACAGTTTTGTTTGTATGTC 57.570 33.333 6.49 2.19 38.40 3.06
2315 2471 5.995282 TGTATTTTAGTGAGAACTGTGGTGG 59.005 40.000 0.00 0.00 0.00 4.61
2336 2492 7.093289 TGGTGGAAAAGTGAGGTTTGAATTAAA 60.093 33.333 0.00 0.00 0.00 1.52
2337 2493 7.931407 GGTGGAAAAGTGAGGTTTGAATTAAAT 59.069 33.333 0.00 0.00 0.00 1.40
2338 2494 9.974980 GTGGAAAAGTGAGGTTTGAATTAAATA 57.025 29.630 0.00 0.00 0.00 1.40
2406 2571 2.031682 GCAGAGCATGTCAAACTCGTTT 60.032 45.455 0.00 0.00 35.56 3.60
2491 2656 7.480760 AAAAAGGCATGGTATCAACACTAAT 57.519 32.000 0.00 0.00 0.00 1.73
2496 2661 5.764686 GGCATGGTATCAACACTAATGATGA 59.235 40.000 0.00 0.00 41.37 2.92
2500 2665 7.609760 TGGTATCAACACTAATGATGAACAC 57.390 36.000 0.00 0.00 40.60 3.32
2558 2723 8.731275 TTCAACAAACTAGAAATGAAGTGAGA 57.269 30.769 0.00 0.00 0.00 3.27
2568 2733 7.238486 AGAAATGAAGTGAGACATGAGTACT 57.762 36.000 0.00 0.00 0.00 2.73
2569 2734 7.095910 AGAAATGAAGTGAGACATGAGTACTG 58.904 38.462 0.00 0.00 0.00 2.74
2570 2735 6.596309 AATGAAGTGAGACATGAGTACTGA 57.404 37.500 0.00 0.00 0.00 3.41
2571 2736 6.596309 ATGAAGTGAGACATGAGTACTGAA 57.404 37.500 0.00 0.00 0.00 3.02
2572 2737 6.596309 TGAAGTGAGACATGAGTACTGAAT 57.404 37.500 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.449632 GCTCTCTCGATGGAGGTAAAAC 58.550 50.000 4.78 0.00 40.85 2.43
1 2 2.431057 GGCTCTCTCGATGGAGGTAAAA 59.569 50.000 4.78 0.00 40.85 1.52
2 3 2.032620 GGCTCTCTCGATGGAGGTAAA 58.967 52.381 4.78 0.00 40.85 2.01
3 4 1.693627 GGCTCTCTCGATGGAGGTAA 58.306 55.000 4.78 0.00 40.85 2.85
5 6 1.456705 GGGCTCTCTCGATGGAGGT 60.457 63.158 4.78 0.00 40.85 3.85
6 7 2.560119 CGGGCTCTCTCGATGGAGG 61.560 68.421 4.78 0.00 40.85 4.30
7 8 1.103987 TTCGGGCTCTCTCGATGGAG 61.104 60.000 0.00 0.00 41.89 3.86
8 9 1.076995 TTCGGGCTCTCTCGATGGA 60.077 57.895 0.00 0.00 35.25 3.41
9 10 1.066587 GTTCGGGCTCTCTCGATGG 59.933 63.158 0.00 0.00 35.25 3.51
10 11 1.066587 GGTTCGGGCTCTCTCGATG 59.933 63.158 0.00 0.00 35.25 3.84
11 12 1.076632 AGGTTCGGGCTCTCTCGAT 60.077 57.895 0.00 0.00 35.25 3.59
12 13 2.046864 CAGGTTCGGGCTCTCTCGA 61.047 63.158 0.00 0.00 0.00 4.04
13 14 2.492090 CAGGTTCGGGCTCTCTCG 59.508 66.667 0.00 0.00 0.00 4.04
14 15 2.726351 CCCAGGTTCGGGCTCTCTC 61.726 68.421 0.00 0.00 40.07 3.20
15 16 2.685380 CCCAGGTTCGGGCTCTCT 60.685 66.667 0.00 0.00 40.07 3.10
22 23 2.160813 CGATGTTTTTACCCAGGTTCGG 59.839 50.000 0.00 0.00 0.00 4.30
23 24 2.809696 ACGATGTTTTTACCCAGGTTCG 59.190 45.455 0.00 0.00 0.00 3.95
24 25 3.566742 ACACGATGTTTTTACCCAGGTTC 59.433 43.478 0.00 0.00 0.00 3.62
25 26 3.558033 ACACGATGTTTTTACCCAGGTT 58.442 40.909 0.00 0.00 0.00 3.50
26 27 3.143728 GACACGATGTTTTTACCCAGGT 58.856 45.455 0.00 0.00 0.00 4.00
27 28 2.486592 GGACACGATGTTTTTACCCAGG 59.513 50.000 0.00 0.00 0.00 4.45
28 29 2.486592 GGGACACGATGTTTTTACCCAG 59.513 50.000 0.00 0.00 31.68 4.45
29 30 2.106857 AGGGACACGATGTTTTTACCCA 59.893 45.455 0.00 0.00 33.25 4.51
30 31 2.786777 AGGGACACGATGTTTTTACCC 58.213 47.619 0.00 0.00 31.54 3.69
31 32 3.566742 ACAAGGGACACGATGTTTTTACC 59.433 43.478 0.00 0.00 0.00 2.85
32 33 4.514066 AGACAAGGGACACGATGTTTTTAC 59.486 41.667 0.00 0.00 0.00 2.01
33 34 4.710324 AGACAAGGGACACGATGTTTTTA 58.290 39.130 0.00 0.00 0.00 1.52
34 35 3.551846 AGACAAGGGACACGATGTTTTT 58.448 40.909 0.00 0.00 0.00 1.94
35 36 3.139077 GAGACAAGGGACACGATGTTTT 58.861 45.455 0.00 0.00 0.00 2.43
36 37 2.550208 GGAGACAAGGGACACGATGTTT 60.550 50.000 0.00 0.00 0.00 2.83
37 38 1.002087 GGAGACAAGGGACACGATGTT 59.998 52.381 0.00 0.00 0.00 2.71
38 39 0.608640 GGAGACAAGGGACACGATGT 59.391 55.000 0.00 0.00 0.00 3.06
39 40 0.898320 AGGAGACAAGGGACACGATG 59.102 55.000 0.00 0.00 0.00 3.84
40 41 0.898320 CAGGAGACAAGGGACACGAT 59.102 55.000 0.00 0.00 0.00 3.73
41 42 0.469331 ACAGGAGACAAGGGACACGA 60.469 55.000 0.00 0.00 0.00 4.35
42 43 0.393077 AACAGGAGACAAGGGACACG 59.607 55.000 0.00 0.00 0.00 4.49
43 44 2.289506 GGTAACAGGAGACAAGGGACAC 60.290 54.545 0.00 0.00 0.00 3.67
44 45 1.975680 GGTAACAGGAGACAAGGGACA 59.024 52.381 0.00 0.00 0.00 4.02
45 46 1.975680 TGGTAACAGGAGACAAGGGAC 59.024 52.381 0.00 0.00 46.17 4.46
46 47 2.409064 TGGTAACAGGAGACAAGGGA 57.591 50.000 0.00 0.00 46.17 4.20
59 60 0.596859 GCGTCTAGGCGGATGGTAAC 60.597 60.000 19.86 0.00 0.00 2.50
60 61 1.038681 TGCGTCTAGGCGGATGGTAA 61.039 55.000 19.86 0.00 35.06 2.85
61 62 1.454295 TGCGTCTAGGCGGATGGTA 60.454 57.895 19.86 0.00 35.06 3.25
62 63 2.758327 TGCGTCTAGGCGGATGGT 60.758 61.111 19.86 0.00 35.06 3.55
63 64 2.279517 GTGCGTCTAGGCGGATGG 60.280 66.667 19.86 0.00 34.24 3.51
64 65 1.589993 CTGTGCGTCTAGGCGGATG 60.590 63.158 19.86 9.25 34.24 3.51
65 66 1.605058 AACTGTGCGTCTAGGCGGAT 61.605 55.000 19.86 0.00 34.24 4.18
66 67 1.812686 AAACTGTGCGTCTAGGCGGA 61.813 55.000 19.86 14.02 35.06 5.54
67 68 1.374252 AAACTGTGCGTCTAGGCGG 60.374 57.895 19.86 3.85 35.06 6.13
68 69 0.666274 TCAAACTGTGCGTCTAGGCG 60.666 55.000 13.55 13.55 35.06 5.52
69 70 1.071605 CTCAAACTGTGCGTCTAGGC 58.928 55.000 0.00 0.00 0.00 3.93
70 71 2.724977 TCTCAAACTGTGCGTCTAGG 57.275 50.000 0.00 0.00 0.00 3.02
71 72 2.731976 GGTTCTCAAACTGTGCGTCTAG 59.268 50.000 0.00 0.00 35.61 2.43
72 73 2.547218 GGGTTCTCAAACTGTGCGTCTA 60.547 50.000 0.00 0.00 35.61 2.59
73 74 1.583054 GGTTCTCAAACTGTGCGTCT 58.417 50.000 0.00 0.00 35.61 4.18
74 75 0.586802 GGGTTCTCAAACTGTGCGTC 59.413 55.000 0.00 0.00 35.61 5.19
75 76 0.818040 GGGGTTCTCAAACTGTGCGT 60.818 55.000 0.00 0.00 35.61 5.24
76 77 0.535102 AGGGGTTCTCAAACTGTGCG 60.535 55.000 0.00 0.00 35.61 5.34
77 78 2.152016 GTAGGGGTTCTCAAACTGTGC 58.848 52.381 0.00 0.00 35.61 4.57
78 79 2.552373 GGGTAGGGGTTCTCAAACTGTG 60.552 54.545 0.00 0.00 35.61 3.66
79 80 1.703513 GGGTAGGGGTTCTCAAACTGT 59.296 52.381 0.00 0.00 35.61 3.55
80 81 1.338769 CGGGTAGGGGTTCTCAAACTG 60.339 57.143 0.00 0.00 35.61 3.16
81 82 0.981943 CGGGTAGGGGTTCTCAAACT 59.018 55.000 0.00 0.00 35.61 2.66
82 83 0.978907 TCGGGTAGGGGTTCTCAAAC 59.021 55.000 0.00 0.00 34.46 2.93
83 84 1.203212 TCTCGGGTAGGGGTTCTCAAA 60.203 52.381 0.00 0.00 0.00 2.69
84 85 0.410663 TCTCGGGTAGGGGTTCTCAA 59.589 55.000 0.00 0.00 0.00 3.02
85 86 0.635009 ATCTCGGGTAGGGGTTCTCA 59.365 55.000 0.00 0.00 0.00 3.27
86 87 1.330234 GATCTCGGGTAGGGGTTCTC 58.670 60.000 0.00 0.00 0.00 2.87
87 88 0.105607 GGATCTCGGGTAGGGGTTCT 60.106 60.000 0.00 0.00 0.00 3.01
88 89 1.461911 CGGATCTCGGGTAGGGGTTC 61.462 65.000 0.00 0.00 34.75 3.62
89 90 1.457079 CGGATCTCGGGTAGGGGTT 60.457 63.158 0.00 0.00 34.75 4.11
90 91 2.197875 CGGATCTCGGGTAGGGGT 59.802 66.667 0.00 0.00 34.75 4.95
91 92 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
92 93 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
93 94 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
94 95 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
99 100 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
100 101 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
101 102 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
102 103 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
103 104 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
104 105 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
110 111 0.942252 GGAGTGTCGGTGTCAAAACC 59.058 55.000 0.00 0.00 36.82 3.27
111 112 0.942252 GGGAGTGTCGGTGTCAAAAC 59.058 55.000 0.00 0.00 0.00 2.43
112 113 0.179040 GGGGAGTGTCGGTGTCAAAA 60.179 55.000 0.00 0.00 0.00 2.44
113 114 1.052124 AGGGGAGTGTCGGTGTCAAA 61.052 55.000 0.00 0.00 0.00 2.69
114 115 1.052124 AAGGGGAGTGTCGGTGTCAA 61.052 55.000 0.00 0.00 0.00 3.18
115 116 1.458777 AAGGGGAGTGTCGGTGTCA 60.459 57.895 0.00 0.00 0.00 3.58
116 117 1.292541 GAAGGGGAGTGTCGGTGTC 59.707 63.158 0.00 0.00 0.00 3.67
117 118 2.214920 GGAAGGGGAGTGTCGGTGT 61.215 63.158 0.00 0.00 0.00 4.16
118 119 2.663196 GGAAGGGGAGTGTCGGTG 59.337 66.667 0.00 0.00 0.00 4.94
119 120 2.606826 GGGAAGGGGAGTGTCGGT 60.607 66.667 0.00 0.00 0.00 4.69
120 121 1.562672 ATTGGGAAGGGGAGTGTCGG 61.563 60.000 0.00 0.00 0.00 4.79
121 122 0.107654 GATTGGGAAGGGGAGTGTCG 60.108 60.000 0.00 0.00 0.00 4.35
122 123 0.107654 CGATTGGGAAGGGGAGTGTC 60.108 60.000 0.00 0.00 0.00 3.67
123 124 1.562672 CCGATTGGGAAGGGGAGTGT 61.563 60.000 0.00 0.00 38.47 3.55
124 125 1.224592 CCGATTGGGAAGGGGAGTG 59.775 63.158 0.00 0.00 38.47 3.51
125 126 2.680370 GCCGATTGGGAAGGGGAGT 61.680 63.158 0.00 0.00 38.47 3.85
126 127 2.193248 GCCGATTGGGAAGGGGAG 59.807 66.667 0.00 0.00 38.47 4.30
127 128 2.286121 AGCCGATTGGGAAGGGGA 60.286 61.111 0.00 0.00 38.47 4.81
128 129 2.124151 CAGCCGATTGGGAAGGGG 60.124 66.667 0.00 0.00 38.47 4.79
129 130 0.611896 AAACAGCCGATTGGGAAGGG 60.612 55.000 0.00 0.00 38.47 3.95
130 131 0.527565 CAAACAGCCGATTGGGAAGG 59.472 55.000 0.00 0.00 38.47 3.46
131 132 0.527565 CCAAACAGCCGATTGGGAAG 59.472 55.000 0.00 0.00 40.48 3.46
132 133 1.531739 GCCAAACAGCCGATTGGGAA 61.532 55.000 10.63 0.00 43.50 3.97
133 134 1.976474 GCCAAACAGCCGATTGGGA 60.976 57.895 10.63 0.00 43.50 4.37
134 135 2.573340 GCCAAACAGCCGATTGGG 59.427 61.111 10.63 0.00 43.50 4.12
135 136 2.573340 GGCCAAACAGCCGATTGG 59.427 61.111 4.65 4.65 45.49 3.16
142 143 2.736531 CCAGTTGGGCCAAACAGC 59.263 61.111 25.15 8.66 32.21 4.40
152 153 0.831288 TGGTTTGGATGCCCAGTTGG 60.831 55.000 0.00 0.00 44.60 3.77
153 154 0.318120 GTGGTTTGGATGCCCAGTTG 59.682 55.000 0.00 0.00 44.60 3.16
154 155 0.831711 GGTGGTTTGGATGCCCAGTT 60.832 55.000 0.00 0.00 44.60 3.16
155 156 1.228862 GGTGGTTTGGATGCCCAGT 60.229 57.895 0.00 0.00 44.60 4.00
156 157 1.228831 TGGTGGTTTGGATGCCCAG 60.229 57.895 0.00 0.00 44.60 4.45
157 158 1.228831 CTGGTGGTTTGGATGCCCA 60.229 57.895 0.00 0.00 41.64 5.36
158 159 2.649129 GCTGGTGGTTTGGATGCCC 61.649 63.158 0.00 0.00 0.00 5.36
159 160 2.649129 GGCTGGTGGTTTGGATGCC 61.649 63.158 0.00 0.00 0.00 4.40
160 161 2.649129 GGGCTGGTGGTTTGGATGC 61.649 63.158 0.00 0.00 0.00 3.91
161 162 1.228831 TGGGCTGGTGGTTTGGATG 60.229 57.895 0.00 0.00 0.00 3.51
162 163 1.228862 GTGGGCTGGTGGTTTGGAT 60.229 57.895 0.00 0.00 0.00 3.41
163 164 2.197324 GTGGGCTGGTGGTTTGGA 59.803 61.111 0.00 0.00 0.00 3.53
164 165 2.123511 TGTGGGCTGGTGGTTTGG 60.124 61.111 0.00 0.00 0.00 3.28
165 166 2.202395 CCTGTGGGCTGGTGGTTTG 61.202 63.158 0.00 0.00 0.00 2.93
166 167 2.198426 CCTGTGGGCTGGTGGTTT 59.802 61.111 0.00 0.00 0.00 3.27
186 187 4.864334 GAGTGATGGGGGCGGCTG 62.864 72.222 9.56 0.00 0.00 4.85
190 191 1.418908 ATAAGGGAGTGATGGGGGCG 61.419 60.000 0.00 0.00 0.00 6.13
191 192 0.402121 GATAAGGGAGTGATGGGGGC 59.598 60.000 0.00 0.00 0.00 5.80
192 193 1.068121 GGATAAGGGAGTGATGGGGG 58.932 60.000 0.00 0.00 0.00 5.40
193 194 1.068121 GGGATAAGGGAGTGATGGGG 58.932 60.000 0.00 0.00 0.00 4.96
194 195 1.068121 GGGGATAAGGGAGTGATGGG 58.932 60.000 0.00 0.00 0.00 4.00
195 196 1.068121 GGGGGATAAGGGAGTGATGG 58.932 60.000 0.00 0.00 0.00 3.51
196 197 2.124560 AGGGGGATAAGGGAGTGATG 57.875 55.000 0.00 0.00 0.00 3.07
197 198 2.114506 CCTAGGGGGATAAGGGAGTGAT 59.885 54.545 0.00 0.00 37.23 3.06
198 199 1.508185 CCTAGGGGGATAAGGGAGTGA 59.492 57.143 0.00 0.00 37.23 3.41
199 200 1.223337 ACCTAGGGGGATAAGGGAGTG 59.777 57.143 14.81 0.00 38.76 3.51
200 201 1.223337 CACCTAGGGGGATAAGGGAGT 59.777 57.143 14.81 0.00 38.76 3.85
201 202 1.508185 TCACCTAGGGGGATAAGGGAG 59.492 57.143 12.23 0.00 38.76 4.30
202 203 1.222298 GTCACCTAGGGGGATAAGGGA 59.778 57.143 12.23 0.00 38.76 4.20
203 204 1.730851 GTCACCTAGGGGGATAAGGG 58.269 60.000 12.23 0.00 38.76 3.95
204 205 1.730851 GGTCACCTAGGGGGATAAGG 58.269 60.000 12.23 0.00 38.76 2.69
205 206 1.339097 CGGTCACCTAGGGGGATAAG 58.661 60.000 12.23 1.54 38.76 1.73
206 207 0.105349 CCGGTCACCTAGGGGGATAA 60.105 60.000 12.23 0.00 38.76 1.75
207 208 1.000590 TCCGGTCACCTAGGGGGATA 61.001 60.000 12.23 0.00 38.76 2.59
208 209 1.893588 TTCCGGTCACCTAGGGGGAT 61.894 60.000 12.23 0.00 38.76 3.85
209 210 2.560083 TTCCGGTCACCTAGGGGGA 61.560 63.158 12.23 6.22 38.76 4.81
210 211 2.039951 TTCCGGTCACCTAGGGGG 59.960 66.667 12.23 3.49 41.89 5.40
211 212 2.364780 GGTTCCGGTCACCTAGGGG 61.365 68.421 14.81 9.88 38.88 4.79
212 213 2.364780 GGGTTCCGGTCACCTAGGG 61.365 68.421 20.63 2.03 34.36 3.53
213 214 0.032813 TAGGGTTCCGGTCACCTAGG 60.033 60.000 20.63 7.41 34.36 3.02
214 215 1.400737 CTAGGGTTCCGGTCACCTAG 58.599 60.000 23.56 23.56 44.55 3.02
215 216 0.685458 GCTAGGGTTCCGGTCACCTA 60.685 60.000 20.63 18.30 34.36 3.08
216 217 1.988406 GCTAGGGTTCCGGTCACCT 60.988 63.158 20.63 18.18 34.36 4.00
217 218 2.582978 GCTAGGGTTCCGGTCACC 59.417 66.667 15.13 15.13 0.00 4.02
218 219 2.183555 CGCTAGGGTTCCGGTCAC 59.816 66.667 0.00 0.00 0.00 3.67
219 220 3.072468 CCGCTAGGGTTCCGGTCA 61.072 66.667 0.00 0.00 37.36 4.02
236 237 1.295746 GGACGAGTTGGGAGGGAAC 59.704 63.158 0.00 0.00 0.00 3.62
237 238 1.916777 GGGACGAGTTGGGAGGGAA 60.917 63.158 0.00 0.00 0.00 3.97
238 239 2.284405 GGGACGAGTTGGGAGGGA 60.284 66.667 0.00 0.00 0.00 4.20
239 240 3.400054 GGGGACGAGTTGGGAGGG 61.400 72.222 0.00 0.00 0.00 4.30
240 241 2.606519 TGGGGACGAGTTGGGAGG 60.607 66.667 0.00 0.00 0.00 4.30
241 242 1.481056 AAGTGGGGACGAGTTGGGAG 61.481 60.000 0.00 0.00 0.00 4.30
242 243 1.460689 AAGTGGGGACGAGTTGGGA 60.461 57.895 0.00 0.00 0.00 4.37
243 244 1.003718 GAAGTGGGGACGAGTTGGG 60.004 63.158 0.00 0.00 0.00 4.12
244 245 1.003718 GGAAGTGGGGACGAGTTGG 60.004 63.158 0.00 0.00 0.00 3.77
245 246 1.003718 GGGAAGTGGGGACGAGTTG 60.004 63.158 0.00 0.00 0.00 3.16
246 247 2.222013 GGGGAAGTGGGGACGAGTT 61.222 63.158 0.00 0.00 0.00 3.01
247 248 2.606826 GGGGAAGTGGGGACGAGT 60.607 66.667 0.00 0.00 0.00 4.18
248 249 2.284699 AGGGGAAGTGGGGACGAG 60.285 66.667 0.00 0.00 0.00 4.18
249 250 2.284405 GAGGGGAAGTGGGGACGA 60.284 66.667 0.00 0.00 0.00 4.20
250 251 3.400054 GGAGGGGAAGTGGGGACG 61.400 72.222 0.00 0.00 0.00 4.79
251 252 3.015753 GGGAGGGGAAGTGGGGAC 61.016 72.222 0.00 0.00 0.00 4.46
252 253 4.364686 GGGGAGGGGAAGTGGGGA 62.365 72.222 0.00 0.00 0.00 4.81
254 255 4.693915 TGGGGGAGGGGAAGTGGG 62.694 72.222 0.00 0.00 0.00 4.61
255 256 3.339093 GTGGGGGAGGGGAAGTGG 61.339 72.222 0.00 0.00 0.00 4.00
256 257 3.717294 CGTGGGGGAGGGGAAGTG 61.717 72.222 0.00 0.00 0.00 3.16
257 258 3.268647 ATCGTGGGGGAGGGGAAGT 62.269 63.158 0.00 0.00 0.00 3.01
258 259 2.366972 ATCGTGGGGGAGGGGAAG 60.367 66.667 0.00 0.00 0.00 3.46
259 260 2.366435 GATCGTGGGGGAGGGGAA 60.366 66.667 0.00 0.00 0.00 3.97
260 261 4.492303 GGATCGTGGGGGAGGGGA 62.492 72.222 0.00 0.00 0.00 4.81
263 264 4.499116 AGGGGATCGTGGGGGAGG 62.499 72.222 0.00 0.00 0.00 4.30
264 265 2.844839 GAGGGGATCGTGGGGGAG 60.845 72.222 0.00 0.00 0.00 4.30
265 266 4.853142 CGAGGGGATCGTGGGGGA 62.853 72.222 0.00 0.00 46.62 4.81
273 274 3.696676 GATCGGGGCGAGGGGATC 61.697 72.222 0.00 0.00 39.91 3.36
283 284 4.499116 AGGTGGAGGGGATCGGGG 62.499 72.222 0.00 0.00 0.00 5.73
284 285 2.844839 GAGGTGGAGGGGATCGGG 60.845 72.222 0.00 0.00 0.00 5.14
285 286 1.383248 AAGAGGTGGAGGGGATCGG 60.383 63.158 0.00 0.00 0.00 4.18
286 287 1.403687 GGAAGAGGTGGAGGGGATCG 61.404 65.000 0.00 0.00 0.00 3.69
287 288 1.403687 CGGAAGAGGTGGAGGGGATC 61.404 65.000 0.00 0.00 0.00 3.36
288 289 1.383248 CGGAAGAGGTGGAGGGGAT 60.383 63.158 0.00 0.00 0.00 3.85
289 290 2.038975 CGGAAGAGGTGGAGGGGA 59.961 66.667 0.00 0.00 0.00 4.81
290 291 3.787001 GCGGAAGAGGTGGAGGGG 61.787 72.222 0.00 0.00 0.00 4.79
291 292 2.685380 AGCGGAAGAGGTGGAGGG 60.685 66.667 0.00 0.00 0.00 4.30
292 293 2.896443 GAGCGGAAGAGGTGGAGG 59.104 66.667 0.00 0.00 0.00 4.30
293 294 1.878656 AACGAGCGGAAGAGGTGGAG 61.879 60.000 0.00 0.00 0.00 3.86
294 295 1.874345 GAACGAGCGGAAGAGGTGGA 61.874 60.000 0.00 0.00 0.00 4.02
295 296 1.446272 GAACGAGCGGAAGAGGTGG 60.446 63.158 0.00 0.00 0.00 4.61
296 297 0.809385 TAGAACGAGCGGAAGAGGTG 59.191 55.000 0.00 0.00 0.00 4.00
297 298 1.096416 CTAGAACGAGCGGAAGAGGT 58.904 55.000 0.00 0.00 0.00 3.85
298 299 1.380524 TCTAGAACGAGCGGAAGAGG 58.619 55.000 0.00 0.00 0.00 3.69
299 300 2.349060 CGATCTAGAACGAGCGGAAGAG 60.349 54.545 16.65 0.00 38.98 2.85
300 301 1.598132 CGATCTAGAACGAGCGGAAGA 59.402 52.381 16.65 0.00 38.98 2.87
301 302 2.025544 CGATCTAGAACGAGCGGAAG 57.974 55.000 16.65 0.00 38.98 3.46
305 306 1.283181 CCCCGATCTAGAACGAGCG 59.717 63.158 22.43 9.84 41.98 5.03
306 307 1.007154 GCCCCGATCTAGAACGAGC 60.007 63.158 22.43 19.37 0.00 5.03
307 308 0.962489 ATGCCCCGATCTAGAACGAG 59.038 55.000 22.43 10.36 0.00 4.18
308 309 0.673985 CATGCCCCGATCTAGAACGA 59.326 55.000 22.43 4.10 0.00 3.85
309 310 0.673985 TCATGCCCCGATCTAGAACG 59.326 55.000 14.89 14.89 0.00 3.95
310 311 2.103263 AGTTCATGCCCCGATCTAGAAC 59.897 50.000 0.00 0.00 35.40 3.01
311 312 2.365617 GAGTTCATGCCCCGATCTAGAA 59.634 50.000 0.00 0.00 0.00 2.10
312 313 1.964223 GAGTTCATGCCCCGATCTAGA 59.036 52.381 0.00 0.00 0.00 2.43
313 314 1.336332 CGAGTTCATGCCCCGATCTAG 60.336 57.143 0.00 0.00 0.00 2.43
314 315 0.673985 CGAGTTCATGCCCCGATCTA 59.326 55.000 0.00 0.00 0.00 1.98
315 316 1.443407 CGAGTTCATGCCCCGATCT 59.557 57.895 0.00 0.00 0.00 2.75
316 317 2.247437 GCGAGTTCATGCCCCGATC 61.247 63.158 0.00 0.00 0.00 3.69
317 318 2.203070 GCGAGTTCATGCCCCGAT 60.203 61.111 0.00 0.00 0.00 4.18
318 319 4.467084 GGCGAGTTCATGCCCCGA 62.467 66.667 0.00 0.00 45.73 5.14
323 324 2.325857 GCATCGGCGAGTTCATGC 59.674 61.111 17.22 16.23 35.23 4.06
324 325 1.815003 TGGCATCGGCGAGTTCATG 60.815 57.895 17.22 9.56 42.47 3.07
325 326 1.815421 GTGGCATCGGCGAGTTCAT 60.815 57.895 17.22 0.00 42.47 2.57
326 327 2.434185 GTGGCATCGGCGAGTTCA 60.434 61.111 17.22 10.15 42.47 3.18
327 328 3.554692 CGTGGCATCGGCGAGTTC 61.555 66.667 17.22 7.46 42.47 3.01
328 329 3.371097 ATCGTGGCATCGGCGAGTT 62.371 57.895 17.22 0.00 42.47 3.01
329 330 3.838271 ATCGTGGCATCGGCGAGT 61.838 61.111 17.22 0.36 42.47 4.18
330 331 3.333189 CATCGTGGCATCGGCGAG 61.333 66.667 17.22 8.85 42.47 5.03
344 345 2.281070 ATGGACGGCGATGGCATC 60.281 61.111 16.62 17.58 42.47 3.91
345 346 2.592574 CATGGACGGCGATGGCAT 60.593 61.111 16.62 0.00 42.47 4.40
346 347 4.854924 CCATGGACGGCGATGGCA 62.855 66.667 20.19 0.00 42.35 4.92
349 350 2.961721 CGACCATGGACGGCGATG 60.962 66.667 25.97 6.23 0.00 3.84
350 351 3.426117 GACGACCATGGACGGCGAT 62.426 63.158 33.78 17.59 37.58 4.58
351 352 4.124351 GACGACCATGGACGGCGA 62.124 66.667 33.78 0.00 37.58 5.54
354 355 3.411418 CTCCGACGACCATGGACGG 62.411 68.421 33.78 29.14 44.09 4.79
355 356 2.102357 CTCCGACGACCATGGACG 59.898 66.667 30.49 30.49 39.00 4.79
356 357 2.202756 GCTCCGACGACCATGGAC 60.203 66.667 21.47 12.21 0.00 4.02
357 358 3.458163 GGCTCCGACGACCATGGA 61.458 66.667 21.47 0.00 0.00 3.41
358 359 4.873129 CGGCTCCGACGACCATGG 62.873 72.222 11.19 11.19 42.83 3.66
377 378 1.757340 GTGGAGGTAGACGAGGGGG 60.757 68.421 0.00 0.00 0.00 5.40
378 379 1.757340 GGTGGAGGTAGACGAGGGG 60.757 68.421 0.00 0.00 0.00 4.79
379 380 0.324460 AAGGTGGAGGTAGACGAGGG 60.324 60.000 0.00 0.00 0.00 4.30
380 381 0.818296 CAAGGTGGAGGTAGACGAGG 59.182 60.000 0.00 0.00 0.00 4.63
381 382 1.473278 GACAAGGTGGAGGTAGACGAG 59.527 57.143 0.00 0.00 0.00 4.18
382 383 1.542492 GACAAGGTGGAGGTAGACGA 58.458 55.000 0.00 0.00 0.00 4.20
383 384 0.170561 CGACAAGGTGGAGGTAGACG 59.829 60.000 0.00 0.00 0.00 4.18
384 385 0.531200 CCGACAAGGTGGAGGTAGAC 59.469 60.000 0.00 0.00 34.51 2.59
385 386 0.406750 TCCGACAAGGTGGAGGTAGA 59.593 55.000 0.00 0.00 41.99 2.59
386 387 0.531200 GTCCGACAAGGTGGAGGTAG 59.469 60.000 0.00 0.00 41.99 3.18
387 388 1.246056 CGTCCGACAAGGTGGAGGTA 61.246 60.000 0.00 0.00 41.99 3.08
388 389 2.571216 CGTCCGACAAGGTGGAGGT 61.571 63.158 0.00 0.00 41.99 3.85
389 390 2.261671 CGTCCGACAAGGTGGAGG 59.738 66.667 0.00 0.00 41.99 4.30
390 391 2.432628 GCGTCCGACAAGGTGGAG 60.433 66.667 0.00 0.00 41.99 3.86
391 392 3.998672 GGCGTCCGACAAGGTGGA 61.999 66.667 0.00 0.00 41.99 4.02
392 393 3.934391 GAGGCGTCCGACAAGGTGG 62.934 68.421 0.00 0.00 41.99 4.61
393 394 2.432628 GAGGCGTCCGACAAGGTG 60.433 66.667 0.00 0.00 41.99 4.00
394 395 4.052229 CGAGGCGTCCGACAAGGT 62.052 66.667 0.00 0.00 41.99 3.50
395 396 4.052229 ACGAGGCGTCCGACAAGG 62.052 66.667 4.93 0.00 33.69 3.61
404 405 1.736586 GATGAGGATGACGAGGCGT 59.263 57.895 0.00 0.00 45.10 5.68
405 406 1.006805 GGATGAGGATGACGAGGCG 60.007 63.158 0.00 0.00 0.00 5.52
406 407 1.006805 CGGATGAGGATGACGAGGC 60.007 63.158 0.00 0.00 0.00 4.70
407 408 1.537638 CTACGGATGAGGATGACGAGG 59.462 57.143 0.00 0.00 0.00 4.63
408 409 2.495084 TCTACGGATGAGGATGACGAG 58.505 52.381 0.00 0.00 0.00 4.18
409 410 2.632987 TCTACGGATGAGGATGACGA 57.367 50.000 0.00 0.00 0.00 4.20
410 411 2.879026 TCTTCTACGGATGAGGATGACG 59.121 50.000 0.00 0.00 0.00 4.35
411 412 5.010112 TGAATCTTCTACGGATGAGGATGAC 59.990 44.000 0.00 0.00 31.94 3.06
412 413 5.140454 TGAATCTTCTACGGATGAGGATGA 58.860 41.667 0.00 0.00 31.94 2.92
413 414 5.459536 TGAATCTTCTACGGATGAGGATG 57.540 43.478 0.00 0.00 31.94 3.51
414 415 7.178573 TCTATGAATCTTCTACGGATGAGGAT 58.821 38.462 0.00 0.00 32.72 3.24
415 416 6.543735 TCTATGAATCTTCTACGGATGAGGA 58.456 40.000 0.00 0.00 0.00 3.71
416 417 6.825944 TCTATGAATCTTCTACGGATGAGG 57.174 41.667 0.00 0.00 0.00 3.86
417 418 6.806249 GCTTCTATGAATCTTCTACGGATGAG 59.194 42.308 0.00 0.00 0.00 2.90
418 419 6.294787 GGCTTCTATGAATCTTCTACGGATGA 60.295 42.308 0.00 0.00 0.00 2.92
419 420 5.866633 GGCTTCTATGAATCTTCTACGGATG 59.133 44.000 0.00 0.00 0.00 3.51
420 421 5.777732 AGGCTTCTATGAATCTTCTACGGAT 59.222 40.000 0.00 0.00 0.00 4.18
421 422 5.010112 CAGGCTTCTATGAATCTTCTACGGA 59.990 44.000 0.00 0.00 0.00 4.69
422 423 5.010112 TCAGGCTTCTATGAATCTTCTACGG 59.990 44.000 0.00 0.00 0.00 4.02
423 424 6.078202 TCAGGCTTCTATGAATCTTCTACG 57.922 41.667 0.00 0.00 0.00 3.51
424 425 8.900983 AAATCAGGCTTCTATGAATCTTCTAC 57.099 34.615 0.00 0.00 0.00 2.59
425 426 7.869937 CGAAATCAGGCTTCTATGAATCTTCTA 59.130 37.037 0.00 0.00 0.00 2.10
426 427 6.705381 CGAAATCAGGCTTCTATGAATCTTCT 59.295 38.462 0.00 0.00 0.00 2.85
427 428 6.481644 ACGAAATCAGGCTTCTATGAATCTTC 59.518 38.462 0.00 0.00 0.00 2.87
428 429 6.352516 ACGAAATCAGGCTTCTATGAATCTT 58.647 36.000 0.00 0.00 0.00 2.40
429 430 5.923204 ACGAAATCAGGCTTCTATGAATCT 58.077 37.500 0.00 0.00 0.00 2.40
430 431 7.148641 TCTACGAAATCAGGCTTCTATGAATC 58.851 38.462 0.00 0.00 0.00 2.52
431 432 7.055667 TCTACGAAATCAGGCTTCTATGAAT 57.944 36.000 0.00 0.00 0.00 2.57
432 433 6.465439 TCTACGAAATCAGGCTTCTATGAA 57.535 37.500 0.00 0.00 0.00 2.57
433 434 6.321435 TCTTCTACGAAATCAGGCTTCTATGA 59.679 38.462 0.00 0.00 0.00 2.15
434 435 6.507900 TCTTCTACGAAATCAGGCTTCTATG 58.492 40.000 0.00 0.00 0.00 2.23
435 436 6.716934 TCTTCTACGAAATCAGGCTTCTAT 57.283 37.500 0.00 0.00 0.00 1.98
436 437 6.716934 ATCTTCTACGAAATCAGGCTTCTA 57.283 37.500 0.00 0.00 0.00 2.10
453 454 6.287589 ACGTATGAGGAAACTGAATCTTCT 57.712 37.500 0.00 0.00 44.43 2.85
523 524 5.483685 TGTGTCATCTACAAGCCTAACTT 57.516 39.130 0.00 0.00 40.63 2.66
526 527 6.941857 TGTAATGTGTCATCTACAAGCCTAA 58.058 36.000 0.00 0.00 40.63 2.69
553 563 2.558795 GAGTGCAGGTGTCTACTCAGAA 59.441 50.000 0.00 0.00 39.39 3.02
555 565 2.094803 CAGAGTGCAGGTGTCTACTCAG 60.095 54.545 0.00 0.00 41.44 3.35
558 568 2.002505 ACAGAGTGCAGGTGTCTACT 57.997 50.000 0.00 0.00 0.00 2.57
582 592 5.106555 CCTGCTTGTGTTTATTGTACTGGAG 60.107 44.000 0.00 0.00 0.00 3.86
583 593 4.759693 CCTGCTTGTGTTTATTGTACTGGA 59.240 41.667 0.00 0.00 0.00 3.86
584 594 4.759693 TCCTGCTTGTGTTTATTGTACTGG 59.240 41.667 0.00 0.00 0.00 4.00
585 595 5.940192 TCCTGCTTGTGTTTATTGTACTG 57.060 39.130 0.00 0.00 0.00 2.74
586 596 6.003950 ACATCCTGCTTGTGTTTATTGTACT 58.996 36.000 0.00 0.00 0.00 2.73
588 598 6.091577 CGTACATCCTGCTTGTGTTTATTGTA 59.908 38.462 0.00 0.00 0.00 2.41
608 619 7.119992 GGCTCTCTGAGAAGATAATATCGTACA 59.880 40.741 8.95 0.00 0.00 2.90
612 623 5.448496 CGGGCTCTCTGAGAAGATAATATCG 60.448 48.000 8.95 0.00 0.00 2.92
670 681 2.236395 TCCAAGCTAAGGGTCTAAGCAC 59.764 50.000 5.38 0.00 38.75 4.40
680 691 2.106684 GGTAGGGGATTCCAAGCTAAGG 59.893 54.545 4.80 0.00 38.24 2.69
706 717 3.305720 ACGGAGGTAAATCTGGCTGATA 58.694 45.455 7.34 0.00 34.45 2.15
714 725 1.679032 GCAGCCAACGGAGGTAAATCT 60.679 52.381 0.00 0.00 0.00 2.40
750 761 4.166888 GATGCTGGAGAGGCGGCA 62.167 66.667 13.08 0.00 39.06 5.69
755 766 1.446791 GAGGCTGATGCTGGAGAGG 59.553 63.158 0.00 0.00 39.59 3.69
757 768 0.972471 TTCGAGGCTGATGCTGGAGA 60.972 55.000 0.00 0.00 39.59 3.71
761 772 2.806856 GCGTTCGAGGCTGATGCTG 61.807 63.158 0.00 0.00 39.59 4.41
763 774 1.911293 TTTGCGTTCGAGGCTGATGC 61.911 55.000 11.18 2.09 38.76 3.91
772 783 5.396947 GTGAATACACAAAATTTGCGTTCGA 59.603 36.000 4.65 0.00 45.32 3.71
773 784 5.585837 GTGAATACACAAAATTTGCGTTCG 58.414 37.500 4.65 0.00 45.32 3.95
820 831 9.490379 GAAGAAGTTGAAGTGAGAACCTAAATA 57.510 33.333 0.00 0.00 0.00 1.40
826 837 9.308318 GATATAGAAGAAGTTGAAGTGAGAACC 57.692 37.037 0.00 0.00 0.00 3.62
861 881 2.480037 TGAATGCACAAAGTCTGCGTAG 59.520 45.455 0.00 0.00 37.46 3.51
1044 1093 1.515952 CTGCTTCGTCTCCGCTCTG 60.516 63.158 0.00 0.00 0.00 3.35
1072 1121 3.374042 TCTCGTCTCCTCTCCTTGATT 57.626 47.619 0.00 0.00 0.00 2.57
1253 1302 3.797256 GTCTGGATCTTACGAATTCACGG 59.203 47.826 6.22 0.00 37.61 4.94
1256 1305 3.772572 TGGGTCTGGATCTTACGAATTCA 59.227 43.478 6.22 0.00 0.00 2.57
1494 1546 6.153851 TGAGAACAAAATACTCCGGTCTGATA 59.846 38.462 0.00 0.00 0.00 2.15
1495 1547 5.046591 TGAGAACAAAATACTCCGGTCTGAT 60.047 40.000 0.00 0.00 0.00 2.90
1522 1574 1.152510 AACACATATCGCGCACAACA 58.847 45.000 8.75 0.00 0.00 3.33
1523 1575 3.377434 TTAACACATATCGCGCACAAC 57.623 42.857 8.75 0.00 0.00 3.32
1524 1576 4.608073 ATTTAACACATATCGCGCACAA 57.392 36.364 8.75 0.00 0.00 3.33
1570 1623 2.839486 TCTCAGGTTTCAGCAATCGT 57.161 45.000 0.00 0.00 0.00 3.73
1572 1625 4.153835 CAGACTTCTCAGGTTTCAGCAATC 59.846 45.833 0.00 0.00 0.00 2.67
1632 1685 7.880195 CCCATTTGGTCCAAACATAAATAACAA 59.120 33.333 19.38 0.00 36.13 2.83
1644 1697 3.905493 TTACTCCCCATTTGGTCCAAA 57.095 42.857 19.29 19.29 37.75 3.28
1650 1703 4.082125 GCCTGATATTACTCCCCATTTGG 58.918 47.826 0.00 0.00 0.00 3.28
1674 1727 1.552792 TGTCAGAAGGTCACACACACA 59.447 47.619 0.00 0.00 0.00 3.72
1682 1735 7.341030 ACATGATTGATATTGTCAGAAGGTCA 58.659 34.615 0.00 0.00 38.29 4.02
1683 1736 7.798596 ACATGATTGATATTGTCAGAAGGTC 57.201 36.000 0.00 0.00 38.29 3.85
1684 1737 8.464404 CAAACATGATTGATATTGTCAGAAGGT 58.536 33.333 9.99 0.00 38.29 3.50
1733 1841 8.742777 CCAAGAATCAATCTCAAATACAAGGAA 58.257 33.333 0.00 0.00 37.42 3.36
1734 1842 7.890127 ACCAAGAATCAATCTCAAATACAAGGA 59.110 33.333 0.00 0.00 37.42 3.36
1738 1846 7.148188 GCAGACCAAGAATCAATCTCAAATACA 60.148 37.037 0.00 0.00 37.42 2.29
1745 1853 3.525537 TCGCAGACCAAGAATCAATCTC 58.474 45.455 0.00 0.00 37.42 2.75
1757 1865 1.825090 AAATCAATGCTCGCAGACCA 58.175 45.000 0.00 0.00 0.00 4.02
1800 1908 7.118496 AGATAGAACTCCCAATACACTCAAG 57.882 40.000 0.00 0.00 0.00 3.02
1801 1909 8.059461 TCTAGATAGAACTCCCAATACACTCAA 58.941 37.037 0.00 0.00 0.00 3.02
1829 1937 9.050601 GTCTGAACTGCTTAGAAATAGCATAAT 57.949 33.333 0.00 0.00 46.63 1.28
1831 1939 6.697455 CGTCTGAACTGCTTAGAAATAGCATA 59.303 38.462 0.00 0.00 46.63 3.14
1832 1940 5.521735 CGTCTGAACTGCTTAGAAATAGCAT 59.478 40.000 0.00 0.00 46.63 3.79
1833 1941 4.864806 CGTCTGAACTGCTTAGAAATAGCA 59.135 41.667 0.00 0.00 45.78 3.49
1834 1942 5.004916 GTCGTCTGAACTGCTTAGAAATAGC 59.995 44.000 0.00 0.00 39.10 2.97
1835 1943 6.093404 TGTCGTCTGAACTGCTTAGAAATAG 58.907 40.000 0.00 0.00 0.00 1.73
1836 1944 6.020971 TGTCGTCTGAACTGCTTAGAAATA 57.979 37.500 0.00 0.00 0.00 1.40
1837 1945 4.883083 TGTCGTCTGAACTGCTTAGAAAT 58.117 39.130 0.00 0.00 0.00 2.17
1838 1946 4.316205 TGTCGTCTGAACTGCTTAGAAA 57.684 40.909 0.00 0.00 0.00 2.52
1839 1947 4.521130 ATGTCGTCTGAACTGCTTAGAA 57.479 40.909 0.00 0.00 0.00 2.10
1840 1948 4.521130 AATGTCGTCTGAACTGCTTAGA 57.479 40.909 0.00 0.00 0.00 2.10
1841 1949 4.686091 TCAAATGTCGTCTGAACTGCTTAG 59.314 41.667 0.00 0.00 0.00 2.18
1842 1950 4.627058 TCAAATGTCGTCTGAACTGCTTA 58.373 39.130 0.00 0.00 0.00 3.09
1843 1951 3.466836 TCAAATGTCGTCTGAACTGCTT 58.533 40.909 0.00 0.00 0.00 3.91
1844 1952 3.111853 TCAAATGTCGTCTGAACTGCT 57.888 42.857 0.00 0.00 0.00 4.24
1845 1953 4.153986 CAATCAAATGTCGTCTGAACTGC 58.846 43.478 0.00 0.00 0.00 4.40
1846 1954 5.348418 ACAATCAAATGTCGTCTGAACTG 57.652 39.130 0.00 0.00 0.00 3.16
1847 1955 6.347725 GCTAACAATCAAATGTCGTCTGAACT 60.348 38.462 0.00 0.00 31.81 3.01
1848 1956 5.790495 GCTAACAATCAAATGTCGTCTGAAC 59.210 40.000 0.00 0.00 31.81 3.18
1849 1957 5.700832 AGCTAACAATCAAATGTCGTCTGAA 59.299 36.000 0.00 0.00 31.81 3.02
1850 1958 5.237815 AGCTAACAATCAAATGTCGTCTGA 58.762 37.500 0.00 0.00 31.81 3.27
1851 1959 5.536554 AGCTAACAATCAAATGTCGTCTG 57.463 39.130 0.00 0.00 31.81 3.51
2021 2152 6.810911 AGCCATAAAGGTATCATATCTAGCG 58.189 40.000 0.00 0.00 40.61 4.26
2103 2234 0.727970 AACACAAAGCGCGTACACAA 59.272 45.000 8.43 0.00 0.00 3.33
2110 2241 3.029735 GCCCAAACACAAAGCGCG 61.030 61.111 0.00 0.00 0.00 6.86
2118 2249 0.454196 ACAAACTGTCGCCCAAACAC 59.546 50.000 0.00 0.00 0.00 3.32
2183 2319 4.649674 GGTGGACAAGATAGGATGTAGACA 59.350 45.833 0.00 0.00 0.00 3.41
2186 2322 3.005897 CCGGTGGACAAGATAGGATGTAG 59.994 52.174 0.00 0.00 0.00 2.74
2198 2334 0.327924 ATGAATGCTCCGGTGGACAA 59.672 50.000 0.00 0.00 0.00 3.18
2255 2397 8.458052 TGTTCGATACTATCAAAATTGCAACAT 58.542 29.630 0.00 0.00 0.00 2.71
2260 2402 8.276325 CCTACTGTTCGATACTATCAAAATTGC 58.724 37.037 0.00 0.00 0.00 3.56
2346 2504 6.421202 CCATTAACTCTAGAAAGCATACCGAC 59.579 42.308 0.00 0.00 0.00 4.79
2347 2505 6.513180 CCATTAACTCTAGAAAGCATACCGA 58.487 40.000 0.00 0.00 0.00 4.69
2348 2506 5.177696 GCCATTAACTCTAGAAAGCATACCG 59.822 44.000 0.00 0.00 0.00 4.02
2477 2642 7.849804 AGTGTTCATCATTAGTGTTGATACC 57.150 36.000 0.40 0.00 34.84 2.73
2510 2675 8.642432 TGAAATGTTCGATGGATAAGAGTAGAT 58.358 33.333 0.00 0.00 0.00 1.98
2514 2679 6.878923 TGTTGAAATGTTCGATGGATAAGAGT 59.121 34.615 0.00 0.00 0.00 3.24
2516 2681 7.680442 TTGTTGAAATGTTCGATGGATAAGA 57.320 32.000 0.00 0.00 0.00 2.10
2522 2687 6.898041 TCTAGTTTGTTGAAATGTTCGATGG 58.102 36.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.