>input_sequence_75522
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------GAACCAAACCAGACC--AATCTTCGGCGAGCCCATCGGCACATTCTCAGAGCGGAGACGAAGCAGGAGGCGGCG
AATCAAGGAGAGGAGACGAGAAGATGGGTGGCGGCATGGAGGTGAACAAGAACCGCTGGATCGAGGAGTGGAACGCCGGC
CGGGAGAACCTCGAGCTCAACTTCCGCTTTACCCGCCGCAGCCTCGCCGTCATCGGCCTCTTCGGCCTCGCCGTCCCCAT
CCTCGTCTACAAGGGCATCGTCCGTGAATTCGTAAGATCCAGACCCATCTCTGCCCACATCTCGTTCTCTCTTCTCCAAA
CCCTAAAACAAATCTGGGC--GTGTGGTTGGAATGGATGCAGCATATGCAGGACGAGGACGCCGGCCGGCCGTACAGGAA
GTTCCTGTGAGCGTCGCCTCCGGTGGATGTCGAGACTCCGAGCCGTCTGCAGGGTTTCGGTCAGGGAGAAGGAATCTCCA
TTCGGTTTGTT-CCCGTACTGTTGTTATCAGACCGGAGTATTTTGTTCTCACATGTTGTGC-GCGATATGTGTTAAATAA
GATGTAATGAAATGCTGTTCTTACG-------------------------------------------------------
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>chr3B_1_TraesCS3B01G325200
GTTTTACCTCCATCGAGAGAGCCCGAACCTGGGTAAAAACATCGTGTCCCTTGTCTCCTGTTACCATCCGCCTAGACGCA
CAGTTTGAGAACCCCTACCCGAGATCCGCCGGTTTTGACACCGACACTCCCCTTCCCAATCGGCTGTTTGGCCCAACTGG
GCATCCAAACCACCAGCCCACAGGCCCAGCCGCCCCCATCACTCCCTTATCCCCCTAGGTGACCGGAACCCTAGCGGTTC
CCTCCCAACTCGTCCCCACTTCCCCTCCCCCACGATCCCCTCGCCCCGATCCCCTCCACCTCTTCCGCTCGTTCTAGATC
GGGGCATGAACTCGCCGATGCCACGATGCCATCGCCGTCCATGGTCGTCGGAGCCGCCCCCCTCGTCTACCTCCACCTTG
TCGGACGCCTCGTCATCCTCATCCGTAGAAGATTCATAGAAGCCTGATTTCGTAGAAGATTCAGTTTCCTCATACGTAGC
TGACTAGGATGTTGTAACCCTAGGACCTCTGGTTATAACCGAGAAGTTAGGCTTGTAGATGA---------CACATTACA
ATTTCTGAGTAGACACCTGCACTCTGTACTTCTCCAGT-ACAATAAACACAAGCAGGATGTACGATATTATCTTCTCAGA
GAGCCCGAACCTAGATAAAACTCGTGTCCCTGGTACCATCGTGCTTAGACCCTTAGCTTGGAATCCCCTACCTCGATATC
AGCCAGATTTACCTCCGTTGGCTGCTAGCCCCTGCCCGCCTGCCGCCTCTCCAGCATCAGCCTCGAACGCAAATTTTGTG
TATTCACGAAAAAAAAATCGGTGTGTACCATATTTAGGTTCTCACTTCAACTTCTTC---TATATCAG------TGAAAG
CTACGCAGACTTTGTGCATTC---------------------------AAAAAAACATTTATGCTTGCACTAAGCAATAT
GTAAGTACGCTTTCGTGCTGCGGTCACGGTTTTCGAGTCTGCCTAAATCGGTACAGAAGTAAGAGGCCGTCTGCCCGTCT
CACCACGAACCAAACCAGACC--AATCTTCGGCGAGCCCATCGGCACATTCTCAGAGCGGAGACGAAGCAGGAGGCGGCG
AATCAAGGAGAGGAGACGAGAAGATGGGTGGCGGCATGGAGGTGAACAAGAACCGCTGGATCGAGGAGTGGAACGCCGGC
CGGGAGAACCTCGAGCTCAACTTCCGCTTTACCCGCCGCAGCCTCGCCGTCATCGGCCTCTTCGGCCTCGCCGTCCCCAT
CCTCGTCTACAAGGGCATCGTCCGTGAATTCGTAAGATCCAGACCCATCTCTGCCCACATCTCGTTCTCTCTTCTCCAAA
CCCTAAAACAAATCTGGGC--GTGTGGTTGGAATGGATGCAGCATATGCAGGACGAGGACGCCGGCCGGCCGTACAGGAA
GTTCCTGTGAGCGTCGCCTCCGGTGGATGTCGAGACTCCGAGCCGTCTGCAGGGTTTCGGTCAGGGAGAAGGAATCTCCA
TTCGGTTTGTT-CCCGTACTGTTGTTATCAGACCGGAGTATTTTGTTCTCACATGTTGTGC-GCGATATGTGTTAAATAA
GATGTAATGAAATGCTGTTCTTACGATTGCTGAAACCTGAGAAGTCTGATTTGGTTAATTTGAGGTGAATATTTGTGTTA
TGCATTGTTATTTATGTTTGGACCAAATGGGGAGTAATATCAGGCGTGTGTGTGTGACCTTCTGACAATATCAATCATGT
TTGTGTGCTTAGCTATT-------------------------------------------------------AGTTGACC
TTCCTTGTATTTGAGATTGATTCTTGGTCTGCGAGCATTGATTTTTTACTGGGCATACCTGCATAGACTTGAGTGTATTG
GGAGTTCTATCTAGAAATTATGCTATTTCTAAGCAGTTCA--------------------GACGACATTTGATTGTTAGC
TTCATATACACTCTAAGTTCTA-TTATCTGTGTTCATTAGTTGCAGTGTCCTATCAGTTTTTATCTAGAACCTCTACTGG
TTTTTGGTCCCCATGAAGGCATTAATCTACTTCCGACTGTTTTCTATACTGATATATT--GAGTGGATGCTCGCTAGATA
TGATACCTTTATGGCTTGAATTGTGATCCGCCTAACGGCCTAAGTAGTCCTCAGTTTATTCGACTGGTATGTTTTGTGTA
CGCGCTTTGTGTTTGGGCGACAGTTTGTGATAATATAT-----TTACATACATATGTGTACTTACAGTTTTGTTTGTATG
TCTACATCCTATCTTGTCCACCGGAGCATTC------ATGTGCCAATTTCACAACATTCAATACAGATGAACCTATATGT
TGC-AATTTTGATAGTA-------------TCGAACAGTAGGTAGATGTATTTTAGTGAGAACTGTGGTGGAAAAGTGAG
GTTTGAATTAAATATT--TTTTTGTCGGTATGCTTT-------CTAGAGTTAATGGCATATGTGTTCTAGCAGAGCATGT
CAAACTCGTTTGCTTGAGCAATATTTGACTGTCATTTTGATATGGTATAAACATCTCTCTTTGTGCAACTAAAAAAGGCA
TGGTATCAACACTAATGATGAACACTAATCAGTTATCTACTCTTATCCATCGAACATTTCAACAAACTAGAAATGAAGTG
AGACATGAGTACTGAAT
>chr3A_438
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-------------------------------------AGAAGCCTAATTTTGTGGAAGATTCAGTTTCCTCATATGTAGC
CGACTAGG-TGTTGTAACCCTAGCACCTCTGGTTATAACCAAGGGGCTAGGCTTGTAGATGA---------CAAATTACA
TTCTTTGGGTTGACACTTGCACTTTATACTTACTTCGACACCATAAACACAAGCAGGACGTATGGTATTATCTTCTCAGA
GAGCCCGAACCTAGATAAAAACCGTGTCCTTGGTATCATTATGCTTAGACGCTTAGCTTGGAATCCCCTACCTCGAGATC
AGCCGGATTTACCTCCGTCAGCCGCTAGCCCCCGTCTGCCCGTCGTCACTCGAACATCAGTCAGGAACACAAACTTTGTG
TATTCGCGAAAAAAAATCAGCT-TGTATCACATTTATGTTCTCACTTCAACTTCTTC---TCCTATATCAGTGATGAAAG
ATACGCAAACTTTGTGTAATCGTGAAA---------------------AAAAAAACATTTATGTTGGCACTAAG------
-TAAGTACGCTTTCGTGCTGCGGTCACGGTTTTCGAGTCTGCCTAAATCGGCACAGAAGTGAGCGGCCGTCTGCCCGTCT
CACCACGAACCAAAACCAGACCAAATCTTCGGCGAGCCCATCGGCACATTCTGAGAGCGGAGAGGAAGCAGGAGGCGGCG
GATCAAGGAGAGGAGACTAGAAGATGGGTGGCGGCATGGAGGTGAACAAGAACCGCTGGATCGAGGAGTGGAACGCCGGC
CGGGAGAACCTCGAGCTCAACTTCCGCTTTACCCGCCGCAGCCTCGCCGTCATCGGCCTCTTCGGCCTCGCCGTCCCCAT
CCTCGTCTACAAGGGCATCGTTCGCGAATTCGTAAGATCCAGACCCATCTCTGCCCGCATCTCGTTCTCTGTTCCCCGAA
CCCTAAAACAAATCTGGGCGTGTGTGGTTGGAATGGATGCAGCATATGCAGGACGAGGACGCCGGCCGGCCGTACAGGAA
GTTCCTGTGAGCGTCGCCTCCGGTGGATGTCGAGACTCCGAGCCGTCTGCAGGGTTTCGGTCAGGGAGAAGGAATCTCCA
TTCGGTTTGTTTCCCGTACTGTTGTAGTCAGACCGGAGTATTTTGTTCTCACA---TGTTGTGCGATATGTGTTAAATAA
GATGTAATGAAATGCTGTTCCTGCAATTGCTGAAACCTGAGAAGTCTGATTTGGTTAATTTGAGGTGAATATTTGTGTTA
TGCGATGTTATTTATGCTTGGATCAAATGGGGAGTAATATCAGGCGAGTGTGTGG--CCTTCTAACAATATCAATCATGT
TTGTGTGCTTAGTTATT-------------------------------------------------------AGTTGACC
ACCCTGGTATTTAAGATTGATTCTGGGTCTGCAAGCATTGACGTTTTACTGGGCATACCTGCATAGAGC-GAGTGTATTG
GGAGTTCTATCAAGAATT---------------------A--------------------GACGACATTTGATTGTTACC
TTCATATACGCTCGAAGTTCTTTTTATCTGTGTTCATTAGTCGCAGTGTCCTATCAGTTTTTATCTAGAGCCTCTTCTGG
TTTTGGATCCCCATGAAGGCATTAATTTACTTCCGACCGTTATCTATACTGATATATT--GAGTGGATGCTTGCTAGATA
TGATGCCTTTATGGCTTGAATTGTGCTCTGC-------CCAAAGTAGTTCCCAGTTTATTCGACTGGTATTTTCTGTGTA
TGTGCTTTATGTTTGGGCCACAGTTTATGACAATAAAT-----TACATACATG--GTGTATTTACAGTTTTGCTTGTACG
TGTACATCCTATCCTGTCCACCGGAGCATTCATTTCTATGTGCCAATTTCACGACATTCAATACAGATGAACCTATCTGT
TAC-AATTTTGATAGTATTGCATAAACTTCTTGAACAGTAGGTAGATGTATTTCAGTGAGAACTGTGGTCAAAAAGCAAG
GTTTGAATTAATATACAATTTTTCCTGGTATGCTTT-------CTAGAGTTAATGGCATATGTGTTCTAGCAGGGCATGT
CAAACTCGTT-GCTTGAGCCATATTTGACTGTCATTTTGATATGGTATAAACATCTCTCTTTGTGCAACTAAAAAAGGCA
TAGTATCAACACTAAGGATGGACATTAATCAGTTGTCTTCACTTATGCATGGAACATTTCAACAAACTAGAAATGAAGTG
AGGCATGAGTAC-----
>chr3D_438
AGAATCT-------------------------------------------------------------------------
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--------------------------------------------TGATTTCATGGAAGATCCAGTTTCCTCATACGTGGC
TGACTAGGATGTTGTAACCCTAGGACATTCGGGTATAACCGAGGAGCTCGAGGAGCTTGGTCTATAGATGGCACATTATA
ATCTTCGGGTAGACACCTCCACTATGTACTTACTATAACACAATAAATACAAGCAGGCCGTATGATATTATTTTCTCAGA
GAGTT-GAACCTAGATAAAACTCGTGTCCCTGGTACCATCAT------ACGCTTAGCTTGGAATCCCCTACCTCGAGATC
AGCCGGATTTACCTCCGTCAGCCGCTAGCCCCCGCCTGTCCGCCATCACTCTAAAATCAGCCAGGAACGCGAATTTTTTG
TATTCGCGAAAAAA-ATCAGCA-TGTACCACATTTATGTTCTCACTTCAATTTCTTTTTGTATATCAG------TGAAAC
ATACGGAAAATTTGTGTATTCGCGAAAAAAACATTTACAACGCAAAATAAAAAAACATTTACGTTTGCATTAAGCAATAT
GCAAGTACGCTTTCGTGTTGCGGTCACGGCTTTCGAGTCTGCCTAAATCGGTACAGAAGTAAGAGGCCGTCTGCCCGTCT
CACAACGAACCAAACCAGACC--AATCTTCGGCGAGCCCATCGGCACATTCTGAGAGCGGAGAGGAAGCAGGAGGCGGCG
GATCAAGGAGAGGAGACGAGAAGATGGGTGGCGGCATGGAGGTGAACAAGAACCGGTGGATCGAGGAGTGGAACGCCGGG
CGGGAGAACCTCGAGCTCAACTTCCGCTTTACCCGCCGCAGCCTCGCCGTCATCGGCCTCTTCGGCCTCGCCGTCCCCAT
CCTCGTCTACAAGGGCATCGTTCGCGAATTCGTAAGATCCAGACCCATCTCTGCCCACATCTTGTTCTCTCTTCTCCAAA
CCCTAAAACAAATCTGGGC--GTGTGGTTGGAATGGATGCAGCATATGCAGGACGAGGACGCCGGCCGGCCGTACAGGAA
GTTCCTGTGAGCGTCGCCTCCGGTGGATGTCGAGACTCCGAGCCGTCTGCAGGGTTTCGGTCAGGGAGAAGGAATCTCCA
TTCGGTTTGTTTCCCGTACTGTTGTAGTCAGACCGGCGTATTTTGTTCTCACA---TGTGC-GCGATATGTGTTAAATAA
GATGTAATGAAATGCTGTTCTTGCAATTGCTGAAACCTGAGAAGTCTGATTTGGTTAATTTGAGGTGAATATTTGTGTTA
TGCAATCTTATTTATGCTTGGATTGAATGGGGAGTAATATCAGGCGAGTGTGTGG--CCTTCTGACAATATCAATCATGT
TTGTGTGCTTAGCTATTAGTTGAAGAAAATGGATTATTTGCCCCACTTCTAACTTTGATCATTTGCCATATTAGTTGAAC
ACCCTGGTATTTAATTTTGATTCTGGGTTTGCAAGCATTGACGTTTTACTGGGCATACCTGCATAGAACTGAGTGTATTG
GGAGTTCTATCGAGAATT---------------------ATGCTATTTCTAAGCAGTTCAGATGATATTTGATTGTTAAC
TTCATATACACTCGAAGTTCTA-TTATCTGTTTTCGTTAGGTGCAGTGTCCTATCAGTTTTTACCTTGAACCTCTTCTGG
TTTTCGGTCCCCATGAAGGCATTAATCTACTTCTGACTGTTACCTATACTGATATATTTTGAGTCGATGTTTGCTAGATA
TGATACCTTTATGGCTTGAGTTGTGATCCTCCTAACGGCCTAAGTTGTCCTCAGTTTATTCGACTAGTATGTTCTCTGTA
TGCGCTTTATGTTCGGGCCACAGTTTGTGACAATAAATTTACATACATATGTG--GTGTACTTGCAGTTTTGTTTGTACG
TGTACATCCTATCCTGTCCACCGGAGCATTCATTTGTATGTGCCAATTTCACAACATTCAATACAGATGAACCTATCTGT
TACAAATTTTGATAGTATTGCATAAACTACTCGAACAGTCGGTAGATGAATTTTAGTGAGAACTGTGGTGAAAAAGTGAG
GTTTGAATTAGTATATAATTTTTCCTGGTATGCTTTTTACTTTCTAGAGTTAATGGCATATTTGTTCTAGCAGAGCATGT
CAAACTCGTT-GTTTGAAACATATCTGACTGTCATTTTGATATG------------------------------------
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>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S--------------------------
-------------------------------------------S--S---------------------------------
--S-S--S---------------S-------SSSSS-S--------------------S---S-----------------
----------------------------------------S---------S-------------------------S---
----S-------------SS--S---------S---S---S----S-S---S-S--------SS----------------
-----S----------SSS-S-S-------S-----S-------------------------------------------
S------S--------S----------------------------------------------S----------------
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----------------------------------------------------S----------S----------------
S-------------------------------------------------------------------------------
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---------------------S--S-------------------------------------------------------
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-------------------------SS--------------------------SSS------------------------
----------------------S-S-------------------------------------------------------
----S-----------S-----S-----------------------S-------SSS-----------------------
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SS---S------S-----------S-------S--------SS------------------------SS-----------
-----------S----S-SSSSSSSSSSSSSSSSSSSSS---------------------------------------S-
-------------S-------------------------------------------------------------S----
----S------------------------------------S-----------------------------S--------
-------------------------------------------------------------------------S------
S-------S---------S-----------S----S--------SSSSSSSSSSS-----------------------S-
-S-----------S--------------------------------------------------------------S---
-S--------------------------------------------------------------------S---------
-----------SSSS--------SSS------------------------------------------------------
----------S--------S------------------------------------------------------------
-S-------------S----S---S---------S---S-S-----S---S-----------------------------
--S---------SSSSS
>forward_233
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-----------------------------------------------------CCTAGGTGACCGGAACCCTA-------
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>reverse_2334
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-------------TTGTCCACCGGAGCATTCAT-----------------------------------------------
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